BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3178

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842755|ref|NP_337792.1|  hypothetical protein MT3267 [Mycoba...   242    2e-62
gi|15610314|ref|NP_217694.1|  hypothetical protein Rv3178 [Mycoba...   241    2e-62
gi|289575891|ref|ZP_06456118.1|  conserved hypothetical protein [...   240    5e-62
gi|340628154|ref|YP_004746606.1|  hypothetical protein MCAN_31931...   237    5e-61
gi|126432655|ref|YP_001068346.1|  hypothetical protein Mjls_0042 ...   168    2e-40
gi|108797033|ref|YP_637230.1|  hypothetical protein Mmcs_0052 [My...   167    6e-40
gi|312195411|ref|YP_004015472.1|  hypothetical protein FraEuI1c_1...   140    6e-32
gi|302526918|ref|ZP_07279260.1|  conserved hypothetical protein [...   137    5e-31
gi|300784413|ref|YP_003764704.1|  hypothetical protein AMED_2507 ...   132    2e-29
gi|340525834|gb|AEK41039.1|  hypothetical protein RAM_12745 [Amyc...   132    2e-29
gi|312138188|ref|YP_004005524.1|  hypothetical protein REQ_07220 ...   118    4e-25
gi|325674907|ref|ZP_08154594.1|  hypothetical protein HMPREF0724_...   117    6e-25
gi|326383127|ref|ZP_08204816.1|  hypothetical protein SCNU_09321 ...   117    6e-25
gi|226364186|ref|YP_002781968.1|  hypothetical protein ROP_47760 ...   115    3e-24
gi|111021649|ref|YP_704621.1|  hypothetical protein RHA1_ro04677 ...   114    4e-24
gi|262203831|ref|YP_003275039.1|  hypothetical protein Gbro_3972 ...   114    6e-24
gi|326331633|ref|ZP_08197921.1|  hypothetical protein NBCG_03072 ...   111    3e-23
gi|226304413|ref|YP_002764371.1|  hypothetical protein RER_09240 ...   111    4e-23
gi|169627712|ref|YP_001701361.1|  hypothetical protein MAB_0609c ...   110    5e-23
gi|229494560|ref|ZP_04388323.1|  conserved hypothetical protein [...   110    5e-23
gi|343928246|ref|ZP_08767700.1|  hypothetical protein GOALK_111_0...   108    3e-22
gi|111026879|ref|YP_708857.1|  hypothetical protein RHA1_ro11052 ...   105    3e-21
gi|269127186|ref|YP_003300556.1|  hypothetical protein Tcur_2976 ...  99.8    1e-19
gi|183985003|ref|YP_001853294.1|  hypothetical protein MMAR_5035 ...  99.0    2e-19
gi|126437629|ref|YP_001073320.1|  hypothetical protein Mjls_5065 ...  97.4    5e-19
gi|108801643|ref|YP_641840.1|  hypothetical protein Mmcs_4680 [My...  97.1    9e-19
gi|300784815|ref|YP_003765106.1|  hypothetical protein AMED_2910 ...  95.1    3e-18
gi|240172838|ref|ZP_04751497.1|  hypothetical protein MkanA1_2623...  93.2    1e-17
gi|289445139|ref|ZP_06434883.1|  conserved hypothetical protein [...  92.4    2e-17
gi|15610683|ref|NP_218064.1|  hypothetical protein Rv3547 [Mycoba...  92.0    2e-17
gi|41406617|ref|NP_959453.1|  hypothetical protein MAP0519c [Myco...  91.7    4e-17
gi|288920589|ref|ZP_06414894.1|  hypothetical protein FrEUN1fDRAF...  91.3    4e-17
gi|118467215|ref|YP_879893.1|  AclJ protein [Mycobacterium avium ...  91.3    4e-17
gi|336458407|gb|EGO37381.1|  deazaflavin-dependent nitroreductase...  91.3    4e-17
gi|330466024|ref|YP_004403767.1|  hypothetical protein VAB18032_1...  91.3    5e-17
gi|288920357|ref|ZP_06414668.1|  hypothetical protein FrEUN1fDRAF...  89.7    1e-16
gi|269126740|ref|YP_003300110.1|  hypothetical protein Tcur_2511 ...  89.0    2e-16
gi|296166578|ref|ZP_06849008.1|  hypothetical protein HMPREF0591_...  88.2    3e-16
gi|342862374|ref|ZP_08719014.1|  hypothetical protein MCOL_25903 ...  88.2    3e-16
gi|254822629|ref|ZP_05227630.1|  hypothetical protein MintA_22059...  88.2    4e-16
gi|16945722|dbj|BAB72053.1|  AclJ [Streptomyces galilaeus]            87.8    5e-16
gi|302529146|ref|ZP_07281488.1|  proline iminopeptidase [Streptom...  87.4    7e-16
gi|302530438|ref|ZP_07282780.1|  conserved hypothetical protein [...  86.7    1e-15
gi|271969075|ref|YP_003343271.1|  hypothetical protein Sros_7866 ...  84.7    5e-15
gi|227121349|gb|ACP19381.1|  hypothetical protein [Micromonospora...  84.3    5e-15
gi|254823479|ref|ZP_05228480.1|  hypothetical protein MintA_26353...  83.6    9e-15
gi|333922113|ref|YP_004495694.1|  hypothetical protein AS9A_4461 ...  83.2    1e-14
gi|227121348|gb|ACP19380.1|  hypothetical protein [Micromonospora...  83.2    1e-14
gi|84498004|ref|ZP_00996801.1|  hypothetical protein JNB_17993 [J...  82.0    2e-14
gi|333992336|ref|YP_004524950.1|  hypothetical protein JDM601_369...  82.0    3e-14


>gi|15842755|ref|NP_337792.1| hypothetical protein MT3267 [Mycobacterium tuberculosis CDC1551]
 gi|254233791|ref|ZP_04927116.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|308232361|ref|ZP_07664068.1| hypothetical protein TMAG_03640 [Mycobacterium tuberculosis SUMu001]
 19 more sequence titles
 Length=171

 Score =  242 bits (617),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 119/119 (100%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  1    LRLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP  60
            LRLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP
Sbjct  53   LRLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP  112

Query  61   PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR
Sbjct  113  PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  171


>gi|15610314|ref|NP_217694.1| hypothetical protein Rv3178 [Mycobacterium tuberculosis H37Rv]
 gi|31794356|ref|NP_856849.1| hypothetical protein Mb3204 [Mycobacterium bovis AF2122/97]
 gi|121639063|ref|YP_979287.1| hypothetical protein BCG_3203 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 53 more sequence titles
 Length=119

 Score =  241 bits (616),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 118/119 (99%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  1    LRLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP  60
            +RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP
Sbjct  1    MRLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP  60

Query  61   PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR
Sbjct  61   PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119


>gi|289575891|ref|ZP_06456118.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|339633186|ref|YP_004724828.1| hypothetical protein MAF_31870 [Mycobacterium africanum GM041182]
 gi|289540322|gb|EFD44900.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|339332542|emb|CCC28257.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=119

 Score =  240 bits (612),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 117/119 (99%), Positives = 118/119 (99%), Gaps = 0/119 (0%)

Query  1    LRLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP  60
            +RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP
Sbjct  1    MRLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP  60

Query  61   PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            PNPDTHIQIGSDRRPVRAVV SSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR
Sbjct  61   PNPDTHIQIGSDRRPVRAVVTSSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119


>gi|340628154|ref|YP_004746606.1| hypothetical protein MCAN_31931 [Mycobacterium canettii CIPT 
140010059]
 gi|340006344|emb|CCC45524.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=119

 Score =  237 bits (604),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 116/119 (98%), Positives = 118/119 (99%), Gaps = 0/119 (0%)

Query  1    LRLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP  60
            +RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNL 
Sbjct  1    MRLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLL  60

Query  61   PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIIL+PR
Sbjct  61   PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILQPR  119


>gi|126432655|ref|YP_001068346.1| hypothetical protein Mjls_0042 [Mycobacterium sp. JLS]
 gi|126232455|gb|ABN95855.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=159

 Score =  168 bits (426),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 80/118 (68%), Positives = 97/118 (83%), Gaps = 0/118 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+GAGFRKPVPT+LLEHR RKSGK FV PLLY+ D  +V++VAS  G+ E+PQWYRNL  
Sbjct  42   RVGAGFRKPVPTMLLEHRGRKSGKVFVTPLLYLRDGADVVIVASQGGRKEHPQWYRNLIA  101

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
             PD   +IGS+RRPV+AVVA +++RARLWP  V+ YADFD+ QSWTER IPVIIL+PR
Sbjct  102  GPDVFAEIGSERRPVKAVVADAEQRARLWPALVELYADFDTYQSWTEREIPVIILQPR  159


>gi|108797033|ref|YP_637230.1| hypothetical protein Mmcs_0052 [Mycobacterium sp. MCS]
 gi|119866118|ref|YP_936070.1| hypothetical protein Mkms_0061 [Mycobacterium sp. KMS]
 gi|108767452|gb|ABG06174.1| hypothetical protein Mmcs_0052 [Mycobacterium sp. MCS]
 gi|119692207|gb|ABL89280.1| Mycobacterium tuberculosis paralogous family 11 [Mycobacterium 
sp. KMS]
Length=159

 Score =  167 bits (422),  Expect = 6e-40, Method: Compositional matrix adjust.
 Identities = 78/118 (67%), Positives = 97/118 (83%), Gaps = 0/118 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+GAGFRKPVPT+LLEHR RK+GK FV PLLY+ D  +V++VAS  G+ E+PQWYRNL  
Sbjct  42   RVGAGFRKPVPTMLLEHRGRKTGKVFVTPLLYLRDGADVVIVASQGGRKEHPQWYRNLIA  101

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
             PD   +IGS+RRPV+AVVA +++RARLWP  V+ YADFD+ QSWTER IPV+IL+PR
Sbjct  102  GPDVFAEIGSERRPVKAVVADAEQRARLWPALVELYADFDTYQSWTEREIPVVILQPR  159


>gi|312195411|ref|YP_004015472.1| hypothetical protein FraEuI1c_1540 [Frankia sp. EuI1c]
 gi|311226747|gb|ADP79602.1| hypothetical protein FraEuI1c_1540 [Frankia sp. EuI1c]
Length=167

 Score =  140 bits (353),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 71/119 (60%), Positives = 85/119 (72%), Gaps = 1/119 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+GAGFR+PVPTLLLEH  R SG+ F  PLLY+ D  N++VVAS  G  +NPQWY NL  
Sbjct  46   RVGAGFRRPVPTLLLEHVGRTSGRRFTTPLLYLDDAPNLVVVASQGGLPKNPQWYANLLA  105

Query  62   NPDTHIQIGSDR-RPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            +PDT + +   R RPV A VA+ DERA LWPR V+ YADF    +WTER IPV+IL PR
Sbjct  106  HPDTLVHLRKQRGRPVHARVATPDERASLWPRLVELYADFAKYAAWTEREIPVVILEPR  164


>gi|302526918|ref|ZP_07279260.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302435813|gb|EFL07629.1| conserved hypothetical protein [Streptomyces sp. AA4]
Length=164

 Score =  137 bits (345),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 68/119 (58%), Positives = 85/119 (72%), Gaps = 1/119 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+GAGFRKPVPTLLLEHR RKSG+ F  PLLY+   +++++VAS  G  ++PQWY NL  
Sbjct  46   RVGAGFRKPVPTLLLEHRGRKSGRLFTTPLLYLRSGDDLVIVASQGGLPKHPQWYFNLRA  105

Query  62   NPDTHIQI-GSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
             P+T + + G    PV A VAS+DER  LWPR V+ YADF   Q WTER IPV++L PR
Sbjct  106  EPETRVHLRGRRNVPVTARVASADERRELWPRLVELYADFAKYQKWTEREIPVVVLTPR  164


>gi|300784413|ref|YP_003764704.1| hypothetical protein AMED_2507 [Amycolatopsis mediterranei U32]
 gi|299793927|gb|ADJ44302.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length=166

 Score =  132 bits (331),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 67/119 (57%), Positives = 81/119 (69%), Gaps = 1/119 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+GAGFRKPVPTLLLEHR RKSG+ F  PLLY+    + ++V S  G   +PQWY NL  
Sbjct  47   RIGAGFRKPVPTLLLEHRGRKSGRLFTTPLLYLRSGADFVIVGSQGGLPRHPQWYFNLLA  106

Query  62   NPDTHIQIGSDRR-PVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            +P+T I +   R  PV A VA   ERA LWPR V+ YADF   Q+WTER IPV++L PR
Sbjct  107  HPETRIDLKGRRGVPVTARVAEPPERAELWPRLVELYADFAKYQAWTEREIPVVVLSPR  165


>gi|340525834|gb|AEK41039.1| hypothetical protein RAM_12745 [Amycolatopsis mediterranei S699]
Length=165

 Score =  132 bits (331),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 67/119 (57%), Positives = 81/119 (69%), Gaps = 1/119 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+GAGFRKPVPTLLLEHR RKSG+ F  PLLY+    + ++V S  G   +PQWY NL  
Sbjct  46   RIGAGFRKPVPTLLLEHRGRKSGRLFTTPLLYLRSGADFVIVGSQGGLPRHPQWYFNLLA  105

Query  62   NPDTHIQIGSDRR-PVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            +P+T I +   R  PV A VA   ERA LWPR V+ YADF   Q+WTER IPV++L PR
Sbjct  106  HPETRIDLKGRRGVPVTARVAEPPERAELWPRLVELYADFAKYQAWTEREIPVVVLSPR  164


>gi|312138188|ref|YP_004005524.1| hypothetical protein REQ_07220 [Rhodococcus equi 103S]
 gi|311887527|emb|CBH46839.1| conserved hypothetical protein [Rhodococcus equi 103S]
Length=156

 Score =  118 bits (295),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 60/114 (53%), Positives = 78/114 (69%), Gaps = 0/114 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+G+ F   +P  LL    RKSG+  V+PLL++ D + VI+VAS  G  +NP WY N+  
Sbjct  41   RVGSAFPWGIPVCLLTTTGRKSGQPRVSPLLFLEDGDRVILVASQGGLPKNPMWYLNIRA  100

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVII  115
            NP+  IQI S  R +RA VA+ +ERA LWPR VD YADFD+ QSWT+R IPV+I
Sbjct  101  NPEVTIQIKSRIRTMRARVATDEERAELWPRLVDMYADFDNYQSWTDRQIPVVI  154


>gi|325674907|ref|ZP_08154594.1| hypothetical protein HMPREF0724_12376 [Rhodococcus equi ATCC 
33707]
 gi|325554493|gb|EGD24168.1| hypothetical protein HMPREF0724_12376 [Rhodococcus equi ATCC 
33707]
Length=156

 Score =  117 bits (293),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 60/114 (53%), Positives = 77/114 (68%), Gaps = 0/114 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+G+ F   +P  LL    RKSG+  V+PLL++ D   VI+VAS  G  +NP WY N+  
Sbjct  41   RVGSAFPWGIPVCLLTTTGRKSGQPRVSPLLFLEDGGRVILVASQGGLPKNPMWYLNIRA  100

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVII  115
            NP+  IQI S  R +RA VA+ +ERA LWPR VD YADFD+ QSWT+R IPV+I
Sbjct  101  NPEVTIQIKSRIRTMRARVATDEERAELWPRLVDMYADFDNYQSWTDRQIPVVI  154


>gi|326383127|ref|ZP_08204816.1| hypothetical protein SCNU_09321 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326198263|gb|EGD55448.1| hypothetical protein SCNU_09321 [Gordonia neofelifaecis NRRL 
B-59395]
Length=159

 Score =  117 bits (293),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 57/117 (49%), Positives = 71/117 (61%), Gaps = 0/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+GA  RKP P  LL    RKSG+    PLLY+ D   +++VAS  G  +NP WY N+  
Sbjct  42   RVGAALRKPTPVCLLTTVGRKSGQKRTVPLLYLRDGQAIVLVASQGGLPKNPSWYYNVRD  101

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
             P   IQIG D R   A +A   ERA LWPR VD YADFD+  +WT+R IPV++  P
Sbjct  102  EPAVSIQIGGDDRAYVARIAGDAERAELWPRLVDLYADFDTYAAWTDRAIPVVVCEP  158


>gi|226364186|ref|YP_002781968.1| hypothetical protein ROP_47760 [Rhodococcus opacus B4]
 gi|226242675|dbj|BAH53023.1| hypothetical protein [Rhodococcus opacus B4]
Length=169

 Score =  115 bits (287),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 56/118 (48%), Positives = 78/118 (67%), Gaps = 0/118 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+G+ F + +P  LL    RKSG   ++PLL++ D + +++VAS  G  ++P WY NL  
Sbjct  52   RVGSAFPRGLPVCLLTTTGRKSGDPRISPLLFLEDGDRIVLVASQGGLPKHPMWYLNLRA  111

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            NP   +Q+ S  RP+ A VA   ERARLWPR VD YADFD+ Q+WT+R IPV++  PR
Sbjct  112  NPQVTVQVKSRVRPMTAQVADPGERARLWPRLVDMYADFDNYQAWTDRTIPVVVCTPR  169


>gi|111021649|ref|YP_704621.1| hypothetical protein RHA1_ro04677 [Rhodococcus jostii RHA1]
 gi|110821179|gb|ABG96463.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=161

 Score =  114 bits (285),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 56/118 (48%), Positives = 79/118 (67%), Gaps = 0/118 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+G+ F + +P  LL    RKSG+  ++PLL++ D + +I+VAS  G  ++P WY NL  
Sbjct  44   RVGSAFPRGLPVCLLTTTGRKSGEPRISPLLFLEDGDRIILVASQGGLPKHPMWYLNLRA  103

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            NPD  +Q+ S  RP+ A VA  +ERARLWPR V  Y DFD+ Q+WT+R IPV++  PR
Sbjct  104  NPDVTVQVKSRVRPMTAHVADPEERARLWPRLVAMYPDFDNYQAWTDRTIPVVVCTPR  161


>gi|262203831|ref|YP_003275039.1| hypothetical protein Gbro_3972 [Gordonia bronchialis DSM 43247]
 gi|262087178|gb|ACY23146.1| hypothetical protein Gbro_3972 [Gordonia bronchialis DSM 43247]
Length=169

 Score =  114 bits (284),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 60/123 (49%), Positives = 76/123 (62%), Gaps = 5/123 (4%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+GA  R PVP  LL    RKSGK   APLLY+   ++ +VVAS  G A +P WY NL  
Sbjct  47   RVGAAARNPVPVALLTTIGRKSGKPRTAPLLYLRRGDDFVVVASQGGSATHPAWYLNLRD  106

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERG-----IPVIIL  116
            NPD  IQ+G D   +RA  A+  ERA++WP  VD Y DFD+  +WT++G     IPV+I 
Sbjct  107  NPDVSIQVGKDTYELRARTATDSERAQIWPELVDHYPDFDTYAAWTDQGPTKRIIPVVIC  166

Query  117  RPR  119
             PR
Sbjct  167  EPR  169


>gi|326331633|ref|ZP_08197921.1| hypothetical protein NBCG_03072 [Nocardioidaceae bacterium Broad-1]
 gi|325950432|gb|EGD42484.1| hypothetical protein NBCG_03072 [Nocardioidaceae bacterium Broad-1]
Length=161

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 58/119 (49%), Positives = 79/119 (67%), Gaps = 1/119 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+ AG+RKP P LLLEH  R SG+ F  PLL++    +++VV S  G  ++PQW  NL  
Sbjct  43   RVMAGWRKPAPVLLLEHIGRTSGRTFSTPLLFMRSGPDLVVVGSQGGLPKDPQWVANLRA  102

Query  62   NPDTHIQI-GSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
             PD  +++  S R  VRA VA   ERA LWP+ ++ YADF++ Q+WT+R IPVI+L PR
Sbjct  103  RPDVAVRLPRSGRSLVRARVADPAERAALWPQLLETYADFETYQTWTDREIPVIVLSPR  161


>gi|226304413|ref|YP_002764371.1| hypothetical protein RER_09240 [Rhodococcus erythropolis PR4]
 gi|226183528|dbj|BAH31632.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=162

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 54/117 (47%), Positives = 76/117 (65%), Gaps = 0/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+G+ F + +P  LL    RKSG+  ++PLL++ D  NVI+VAS  G  +NP WY N+  
Sbjct  43   RVGSAFPRGLPICLLTTTGRKSGEERISPLLFLEDGENVILVASQGGLPKNPMWYLNIKT  102

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            +P   +QI S  R ++A V++ DERARLWP     Y DFD+ Q+WT+R IPVI+  P
Sbjct  103  DPVVTVQIKSRIRSMKARVSTEDERARLWPMLTAMYPDFDNYQAWTDRIIPVIVCEP  159


>gi|169627712|ref|YP_001701361.1| hypothetical protein MAB_0609c [Mycobacterium abscessus ATCC 
19977]
 gi|169239679|emb|CAM60707.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=162

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 55/117 (48%), Positives = 74/117 (64%), Gaps = 0/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+GA F   +P LLL    RK+G+  ++ LLY+ D + V++VAS  G+A NP WY NL  
Sbjct  46   RVGAAFPWGIPVLLLTTTGRKTGQQRLSALLYLPDGDKVVLVASQGGRASNPAWYLNLKA  105

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            N +  +QI  D R + A  A+  ERA  WP+ V+ YADFD  QS+T R IPV+IL P
Sbjct  106  NSEVTVQIKGDIRTMTARTATDAERAYYWPKLVELYADFDKYQSYTTRQIPVVILEP  162


>gi|229494560|ref|ZP_04388323.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229318922|gb|EEN84780.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=162

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 55/117 (48%), Positives = 76/117 (65%), Gaps = 0/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+G+ F + +P  LL    RKSG+  ++PLL++ D  NVI+VAS  G  +NP WY N+  
Sbjct  43   RVGSAFPRGLPICLLTTTGRKSGEERISPLLFLEDGENVILVASQGGLPKNPMWYLNIKS  102

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            +P   +QI S  R ++A VA+ DERARLWP     Y DFD+ Q+WT+R IPVI+  P
Sbjct  103  DPVVTVQIKSRIRSMKARVAAEDERARLWPMLRAMYPDFDNYQAWTDRVIPVIVCEP  159


>gi|343928246|ref|ZP_08767700.1| hypothetical protein GOALK_111_00150 [Gordonia alkanivorans NBRC 
16433]
 gi|343761840|dbj|GAA14626.1| hypothetical protein GOALK_111_00150 [Gordonia alkanivorans NBRC 
16433]
Length=164

 Score =  108 bits (269),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 52/117 (45%), Positives = 72/117 (62%), Gaps = 0/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+GAG +KP P  LL    RKSG+    PL+Y+   +  +VVAS  G A++P WY NL  
Sbjct  45   RVGAGLKKPAPVCLLTTIGRKSGEPRTVPLVYLRRGDQFVVVASQGGSAKHPAWYLNLRD  104

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            NP   +Q+G +   + A  A+  ERA +WP  V+ YADFD+  +WT+R IPV+I  P
Sbjct  105  NPSVTVQLGKETFDLTARTATEAERAEVWPELVEVYADFDTYVAWTDRTIPVVICEP  161


>gi|111026879|ref|YP_708857.1| hypothetical protein RHA1_ro11052 [Rhodococcus jostii RHA1]
 gi|110825418|gb|ABH00699.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=155

 Score =  105 bits (261),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 51/118 (44%), Positives = 73/118 (62%), Gaps = 0/118 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            R+G  F     TLL++H   +SG +  + L+Y  D  N+I+VAS  G   NP W+ NL  
Sbjct  37   RIGHRFLHLKQTLLIDHVGARSGTHRTSGLVYAKDGANLILVASKGGHPRNPDWFHNLRA  96

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            NPDT +Q+G++RR V A VA  DER RLW   +D +  F + Q+ T+R IP+++L PR
Sbjct  97   NPDTTVQVGTERRTVHARVAQQDERERLWALAIDVHPGFAAYQARTDREIPLVVLEPR  154


>gi|269127186|ref|YP_003300556.1| hypothetical protein Tcur_2976 [Thermomonospora curvata DSM 43183]
 gi|268312144|gb|ACY98518.1| hypothetical protein Tcur_2976 [Thermomonospora curvata DSM 43183]
Length=163

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 53/119 (45%), Positives = 70/119 (59%), Gaps = 1/119 (0%)

Query  1    LRLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP  60
              +G+ + + VP  L     RKSG     PLLY+ D   ++VVAS  G   +PQWY NL 
Sbjct  44   FHVGSAWLRGVPVCLFTTIGRKSGLPRTMPLLYMRDGERIVVVASQGGLPGHPQWYLNLR  103

Query  61   PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWT-ERGIPVIILRP  118
             NP+  +QIG  +R +RA  A   ERA+LWPR +  YADFD+ Q W  +R IPV+I  P
Sbjct  104  ANPEVVVQIGRKKRRMRARTADEAERAQLWPRLLKIYADFDNYQRWAGDRVIPVVICEP  162


>gi|183985003|ref|YP_001853294.1| hypothetical protein MMAR_5035 [Mycobacterium marinum M]
 gi|183178329|gb|ACC43439.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=151

 Score = 99.0 bits (245),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 50/116 (44%), Positives = 70/116 (61%), Gaps = 1/116 (0%)

Query  3    LGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPN  62
            LG  F+K +P  LL    RK+G+  V+PL +  D + VIV AS  G A+NP WY NL  N
Sbjct  37   LGGTFQK-IPVALLTTTGRKTGEPRVSPLYFHRDGDRVIVAASKGGSAKNPMWYLNLKAN  95

Query  63   PDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            P   +QI  +   + A  A+ +ERAR WP+ VD Y  ++  QSWT+R IP+++  P
Sbjct  96   PKVGVQIKKEVLDLTARDATDEERARYWPKLVDMYPSYEDYQSWTDRTIPIVVCEP  151


>gi|126437629|ref|YP_001073320.1| hypothetical protein Mjls_5065 [Mycobacterium sp. JLS]
 gi|126237429|gb|ABO00830.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=150

 Score = 97.4 bits (241),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 51/117 (44%), Positives = 69/117 (59%), Gaps = 1/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            RLG  F K  P  LL    RK+G+  V+PL+++ D   VI+VAS  G  ++P WY NL  
Sbjct  35   RLGGSFGK-APVALLTTIGRKTGEPRVSPLIFLRDGERVILVASRGGSDKHPMWYLNLRA  93

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            NP   +QI  D   + A +A+ DE A  WP+    Y DFDS +SWT+R IP++I  P
Sbjct  94   NPTVQVQIRDDVLTLTARLATEDEHAHYWPKLTAMYPDFDSYRSWTDREIPIVICEP  150


>gi|108801643|ref|YP_641840.1| hypothetical protein Mmcs_4680 [Mycobacterium sp. MCS]
 gi|119870794|ref|YP_940746.1| hypothetical protein Mkms_4766 [Mycobacterium sp. KMS]
 gi|108772062|gb|ABG10784.1| hypothetical protein Mmcs_4680 [Mycobacterium sp. MCS]
 gi|119696883|gb|ABL93956.1| Mycobacterium tuberculosis paralogous family 11 [Mycobacterium 
sp. KMS]
Length=150

 Score = 97.1 bits (240),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 50/117 (43%), Positives = 69/117 (59%), Gaps = 1/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            RLG  F K  P  LL    RK+G+  V+PL+++ D   VI+VAS  G  ++P WY NL  
Sbjct  35   RLGGSFGK-APVALLTTIGRKTGEPRVSPLIFLRDGERVILVASRGGSDKHPMWYLNLRA  93

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            NP   +QI  D   + A +A+ DE A  WP+    Y DFD+ +SWT+R IP++I  P
Sbjct  94   NPTVQVQIKDDVLTLTARLATEDEHAHYWPKLTAMYPDFDNYRSWTDREIPIVICEP  150


>gi|300784815|ref|YP_003765106.1| hypothetical protein AMED_2910 [Amycolatopsis mediterranei U32]
 gi|299794329|gb|ADJ44704.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
 gi|340526241|gb|AEK41446.1| hypothetical protein RAM_14790 [Amycolatopsis mediterranei S699]
Length=156

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 48/118 (41%), Positives = 70/118 (60%), Gaps = 1/118 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            ++G  +    P LLL H  RKSG+  ++PL+Y+ D   ++VVAS  G   +P W+ NL  
Sbjct  32   KVGGSYFGGAPVLLLHHVGRKSGEARISPLIYLDDAPRLVVVASKGGVDAHPAWFHNLTA  91

Query  62   NPDTHIQI-GSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
               T +++ G +RR VR  VA   ERARLW R V  Y  + +  ++TER IPV++L P
Sbjct  92   MATTEVELPGGERRRVRPHVAEGAERARLWDRAVAIYKTYAAYATYTERTIPVVVLEP  149


>gi|240172838|ref|ZP_04751497.1| hypothetical protein MkanA1_26232 [Mycobacterium kansasii ATCC 
12478]
Length=151

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 47/116 (41%), Positives = 69/116 (60%), Gaps = 1/116 (0%)

Query  3    LGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPN  62
            LG  F+K +P  LL    RK+G+  V+PL ++ D + VIV AS  G  +NP WY NL  N
Sbjct  37   LGGTFQK-IPVALLTTTGRKTGQPRVSPLYFLRDGDRVIVAASKGGADKNPMWYLNLKAN  95

Query  63   PDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            P   +QI  +   + A  A+ +ERA+ W + VD Y  ++  QSWT+R IP+++  P
Sbjct  96   PKVSVQIKKEILDLTARDATDEERAKYWRQLVDMYPTYEDYQSWTDRTIPIVVCEP  151


>gi|289445139|ref|ZP_06434883.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289418097|gb|EFD15298.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=151

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 47/116 (41%), Positives = 65/116 (57%), Gaps = 1/116 (0%)

Query  3    LGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPN  62
            LG  F+K +P  LL    RK+G+  V PL ++ D   VIV AS  G  +NP WY NL  N
Sbjct  37   LGGTFQK-IPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKAN  95

Query  63   PDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            P   +QI  +   + A  A+ +ERA  WP+ V  Y  +   QSWT+R IP+++  P
Sbjct  96   PKVQVQIKKEVLDLTARNATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP  151


>gi|15610683|ref|NP_218064.1| hypothetical protein Rv3547 [Mycobacterium tuberculosis H37Rv]
 gi|15843159|ref|NP_338196.1| hypothetical protein MT3651 [Mycobacterium tuberculosis CDC1551]
 gi|31794723|ref|NP_857216.1| hypothetical protein Mb3577 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=151

 Score = 92.0 bits (227),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 47/116 (41%), Positives = 65/116 (57%), Gaps = 1/116 (0%)

Query  3    LGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPN  62
            LG  F+K +P  LL    RK+G+  V PL ++ D   VIV AS  G  +NP WY NL  N
Sbjct  37   LGGTFQK-IPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKAN  95

Query  63   PDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            P   +QI  +   + A  A+ +ERA  WP+ V  Y  +   QSWT+R IP+++  P
Sbjct  96   PKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP  151


>gi|41406617|ref|NP_959453.1| hypothetical protein MAP0519c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|254773570|ref|ZP_05215086.1| hypothetical protein MaviaA2_02685 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41394966|gb|AAS02836.1| hypothetical protein MAP_0519c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=148

 Score = 91.7 bits (226),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 49/117 (42%), Positives = 71/117 (61%), Gaps = 1/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            + G  F+K  P  LL    RK+G+  V+PLLY+ + + VI+VAS  G+ ++P WY NL  
Sbjct  33   KWGGTFQKR-PVALLTTTGRKTGQPRVSPLLYLREGDRVILVASQGGRDKHPLWYLNLKA  91

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            NP   +QI  +   ++A  A+ +ER + WP+ V  Y  FD  QSWT+R IPV+I  P
Sbjct  92   NPKVSVQIKDEVLQLQARDATPEEREQYWPKLVAMYPSFDDYQSWTDRVIPVVICDP  148


>gi|288920589|ref|ZP_06414894.1| hypothetical protein FrEUN1fDRAFT_4592 [Frankia sp. EUN1f]
 gi|288348010|gb|EFC82282.1| hypothetical protein FrEUN1fDRAFT_4592 [Frankia sp. EUN1f]
Length=144

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 47/108 (44%), Positives = 68/108 (63%), Gaps = 0/108 (0%)

Query  11   VPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPNPDTHIQIG  70
            V TLLL    R+SG+   + L++  D ++ +VVAS  G  E+P+WYRNL  NP   IQ+ 
Sbjct  36   VHTLLLTTTGRRSGQPRTSALIFARDGDDYLVVASKGGAPEHPEWYRNLLANPAAEIQVQ  95

Query  71   SDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            ++R  VRA  AS  E+ARLW      + ++D+ Q+ TER IPV++L P
Sbjct  96   AERFTVRAATASDAEKARLWEIVTKVWPNYDAYQTRTERPIPVVVLSP  143


>gi|118467215|ref|YP_879893.1| AclJ protein [Mycobacterium avium 104]
 gi|118168502|gb|ABK69399.1| AclJ protein [Mycobacterium avium 104]
Length=142

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 49/117 (42%), Positives = 71/117 (61%), Gaps = 1/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            + G  F+K  P  LL    RK+G+  V+PLLY+ + + VI+VAS  G+ ++P WY NL  
Sbjct  27   KWGGTFQKR-PVALLTTTGRKTGQPRVSPLLYLREGDRVILVASQGGRDKHPLWYLNLKA  85

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            NP   +QI  +   ++A  A+ +ER + WP+ V  Y  FD  QSWT+R IPV+I  P
Sbjct  86   NPKVSVQIKDEVLQLQARDATPEEREQYWPKLVAMYPSFDDYQSWTDRVIPVVICDP  142


>gi|336458407|gb|EGO37381.1| deazaflavin-dependent nitroreductase family protein [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=138

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 49/117 (42%), Positives = 71/117 (61%), Gaps = 1/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            + G  F+K  P  LL    RK+G+  V+PLLY+ + + VI+VAS  G+ ++P WY NL  
Sbjct  23   KWGGTFQKR-PVALLTTTGRKTGQPRVSPLLYLREGDRVILVASQGGRDKHPLWYLNLKA  81

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            NP   +QI  +   ++A  A+ +ER + WP+ V  Y  FD  QSWT+R IPV+I  P
Sbjct  82   NPKVSVQIKDEVLQLQARDATPEEREQYWPKLVAMYPSFDDYQSWTDRVIPVVICDP  138


>gi|330466024|ref|YP_004403767.1| hypothetical protein VAB18032_10245 [Verrucosispora maris AB-18-032]
 gi|328808995|gb|AEB43167.1| hypothetical protein VAB18032_10245 [Verrucosispora maris AB-18-032]
Length=145

 Score = 91.3 bits (225),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 48/113 (43%), Positives = 66/113 (59%), Gaps = 0/113 (0%)

Query  4    GAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPNP  63
            G  +R  V TLLL  R R+SGK     L+Y  D    ++VAS  G   +P WY NL  +P
Sbjct  30   GHEWRPGVFTLLLTTRGRRSGKLRRTALIYGRDGEAYVIVASQGGDPRHPAWYLNLEADP  89

Query  64   DTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIIL  116
               +Q+G+DR   RA  A+ +E+ARLWP   D +  +D  Q+ TER IPV++L
Sbjct  90   TAQVQVGADRFTARARTATPEEKARLWPMMTDIWPAYDDYQAKTERDIPVVVL  142


>gi|288920357|ref|ZP_06414668.1| hypothetical protein FrEUN1fDRAFT_4366 [Frankia sp. EUN1f]
 gi|288348234|gb|EFC82500.1| hypothetical protein FrEUN1fDRAFT_4366 [Frankia sp. EUN1f]
Length=151

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 0/115 (0%)

Query  3    LGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPN  62
            +   F +  PTLLL  R R+SGK    PL+Y  D N+ ++VAS  G  E+P WY NL  +
Sbjct  35   IDGSFTQGAPTLLLTTRGRRSGKPRRTPLIYGRDGNDYVIVASKAGFPEHPLWYLNLLAH  94

Query  63   PDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILR  117
            P+  +Q+ ++R P  A VA   E+ARLW      + ++D+ QS T+R IP+++L 
Sbjct  95   PEAELQVEAERFPANARVAEPAEKARLWLVMTALWPEYDAYQSRTDRDIPIVLLE  149


>gi|269126740|ref|YP_003300110.1| hypothetical protein Tcur_2511 [Thermomonospora curvata DSM 43183]
 gi|268311698|gb|ACY98072.1| hypothetical protein Tcur_2511 [Thermomonospora curvata DSM 43183]
Length=134

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 42/114 (37%), Positives = 64/114 (57%), Gaps = 0/114 (0%)

Query  3    LGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPN  62
            +G  + K  P L+L  + RKSG+    PL+Y   + N +VVAS  G  ++P WY NL  +
Sbjct  18   VGHDWEKGAPVLILTTKGRKSGQERKCPLIYQEHQGNYVVVASKGGAPDHPHWYLNLQAD  77

Query  63   PDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIIL  116
            P+  +Q+ +D+   RA  A   ER  LW +    + D+D  Q  T+R IPV++L
Sbjct  78   PEVRVQVKADKFTARARTAEGAERDELWAKMAAVWPDYDEYQKKTDRQIPVVVL  131


>gi|296166578|ref|ZP_06849008.1| hypothetical protein HMPREF0591_2449 [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898064|gb|EFG77640.1| hypothetical protein HMPREF0591_2449 [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=150

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 48/117 (42%), Positives = 66/117 (57%), Gaps = 1/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            RLG  F    P  LL    RK+G+  V+PLLY+ + N V++VAS  G  +NP WY NL  
Sbjct  35   RLGGTFGN-APVALLTTTGRKTGEPRVSPLLYLREGNRVVLVASKGGSDKNPLWYLNLKA  93

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            NP+  +QI  +   +RA  A+  ER   WP+    Y  F   +SWT+R IP++I  P
Sbjct  94   NPEVSVQIKDEVLRLRARDATEAEREEYWPKLDKMYPSFGDYRSWTDRVIPIVICDP  150


>gi|342862374|ref|ZP_08719014.1| hypothetical protein MCOL_25903 [Mycobacterium colombiense CECT 
3035]
 gi|342130045|gb|EGT83379.1| hypothetical protein MCOL_25903 [Mycobacterium colombiense CECT 
3035]
Length=150

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 46/117 (40%), Positives = 68/117 (59%), Gaps = 1/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            + G  F+K  P  LL    RK+G+  V+PLLY+ + N V++VAS  G  ++P WY NL  
Sbjct  35   KFGGTFQK-APVALLTTTGRKTGEPRVSPLLYLREGNRVVLVASKGGSDKHPLWYLNLKA  93

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            +P   +QI  +   +RA  A+  ERA  WP+    Y  FD  ++WT+R IP++I  P
Sbjct  94   DPKVSVQIKDEVLQLRARDATEAERAEYWPKLDAMYPSFDDYRAWTDRVIPIVICDP  150


>gi|254822629|ref|ZP_05227630.1| hypothetical protein MintA_22059 [Mycobacterium intracellulare 
ATCC 13950]
Length=150

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 47/117 (41%), Positives = 68/117 (59%), Gaps = 1/117 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            + G  F+K  P  LL    RK+G+  V+PLLY+ + + V++VAS  G  ++P WY NL  
Sbjct  35   KFGGTFQK-APVALLTTTGRKTGEPRVSPLLYLREGDRVVLVASKGGSDKHPLWYLNLKA  93

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            NP   +QI  +   ++A  A+  ERA  WP+    Y  FD  +SWT+R IPV+I  P
Sbjct  94   NPKVSVQIKDEVLHLQARDATEAERAEYWPKLDAMYPSFDDYRSWTDRVIPVVICDP  150


>gi|16945722|dbj|BAB72053.1| AclJ [Streptomyces galilaeus]
Length=156

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 45/106 (43%), Positives = 63/106 (60%), Gaps = 0/106 (0%)

Query  13   TLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPNPDTHIQIGSD  72
            TLLL  R RKSG+     ++Y  D  N+IVV S  G+ E+P WY NL  +P+ H+QIG +
Sbjct  48   TLLLTTRGRKSGRLRRTAVIYGRDGGNIIVVGSNGGKPEHPLWYLNLVASPEAHVQIGEE  107

Query  73   RRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
               VRA  A+++E+  LW      +  + S Q  T+R IPV+IL P
Sbjct  108  HLDVRARTATAEEKPELWKLMTGLFPQYKSYQKKTDREIPVVILEP  153


>gi|302529146|ref|ZP_07281488.1| proline iminopeptidase [Streptomyces sp. AA4]
 gi|302438041|gb|EFL09857.1| proline iminopeptidase [Streptomyces sp. AA4]
Length=472

 Score = 87.4 bits (215),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 42/116 (37%), Positives = 69/116 (60%), Gaps = 0/116 (0%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPP  61
            ++G  +++ VPTL+L  + RK+G++    L+Y  D  N ++VAS  G   +P WY NL  
Sbjct  355  KVGHDWQEGVPTLVLTTKGRKTGQDRKFALIYQEDNGNPVIVASKGGAPNHPGWYLNLQE  414

Query  62   NPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILR  117
            NP+  +Q+  D+   RA  A+ +ERARLW +    +  ++  Q  T+R IPV++L 
Sbjct  415  NPEVRVQVWGDKFTARARTATGEERARLWDKLAAVWPAYNDYQKKTDREIPVVVLE  470


>gi|302530438|ref|ZP_07282780.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302439333|gb|EFL11149.1| conserved hypothetical protein [Streptomyces sp. AA4]
Length=134

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 45/114 (40%), Positives = 63/114 (56%), Gaps = 1/114 (0%)

Query  5    AGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPNPD  64
             G  +    +LL H   KSGK  V+PL+Y TD + +++VAS  G   NP WY NL  NP 
Sbjct  20   GGMFEGKNMVLLTHTGAKSGKQRVSPLVYTTDGDRIVIVASKGGADTNPDWYHNLVANPS  79

Query  65   THIQIGSDRRPVRA-VVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILR  117
              ++IG+D+ P  A +V    ER RL+ + V+    F   +  TER IPV +L 
Sbjct  80   VTVEIGTDKFPATAKLVTDRAERDRLYAKMVEHAEGFAEYEKKTERLIPVFVLE  133


>gi|271969075|ref|YP_003343271.1| hypothetical protein Sros_7866 [Streptosporangium roseum DSM 
43021]
 gi|270512250|gb|ACZ90528.1| hypothetical protein Sros_7866 [Streptosporangium roseum DSM 
43021]
Length=145

 Score = 84.7 bits (208),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 44/109 (41%), Positives = 62/109 (57%), Gaps = 0/109 (0%)

Query  8    RKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPNPDTHI  67
            R  V TLLL  R R+SG      L+Y TD   ++VV S  G   +P WY NL   P  H+
Sbjct  29   RWGVTTLLLITRGRRSGLPRRTALIYGTDGERLVVVGSNGGADAHPAWYLNLLAEPSAHV  88

Query  68   QIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIIL  116
            Q+G+++  V AV A  +ER RLW      +AD++  ++ T R IPV++L
Sbjct  89   QVGAEQFAVTAVEAEGEERERLWEMMAGLWADYERYRTGTSRAIPVVVL  137


>gi|227121349|gb|ACP19381.1| hypothetical protein [Micromonospora sp. Tu 6368]
Length=349

 Score = 84.3 bits (207),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 38/107 (36%), Positives = 63/107 (59%), Gaps = 0/107 (0%)

Query  12   PTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPNPDTHIQIGS  71
            PTLLL  R R++G+    PL+Y  D + ++++AS     +NP WY+NL  +P+  +Q+ +
Sbjct  240  PTLLLTTRGRRTGRQIRTPLIYGRDGDRIVLIASNGASPKNPHWYQNLVADPEVRVQVRA  299

Query  72   DRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            DR      +A+++ER RLW      +  +D   + T R IPV++L P
Sbjct  300  DRFVATGRIATAEERPRLWELMAKIFPKYDEYATETTRDIPVVVLEP  346


>gi|254823479|ref|ZP_05228480.1| hypothetical protein MintA_26353 [Mycobacterium intracellulare 
ATCC 13950]
Length=161

 Score = 83.6 bits (205),  Expect = 9e-15, Method: Compositional matrix adjust.
 Identities = 45/114 (40%), Positives = 62/114 (55%), Gaps = 0/114 (0%)

Query  5    AGFRKPVPTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPNPD  64
            AG    +   LL    RKSG +   PL+++ D   +++VAS  G   +P W+ NL  NPD
Sbjct  47   AGHELGLALCLLTTTGRKSGLSRTTPLIFMADDARLVLVASQGGLPTHPMWFLNLRANPD  106

Query  65   THIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
              +QI +  R +RA VA   ER +LWPR       +   QSWT+R IPV+I  P
Sbjct  107  VRVQIRAQTRSMRARVADETERTQLWPRLTAHNPRWARYQSWTDRVIPVVICEP  160


>gi|333922113|ref|YP_004495694.1| hypothetical protein AS9A_4461 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333484334|gb|AEF42894.1| hypothetical protein AS9A_4461 [Amycolicicoccus subflavus DQS3-9A1]
Length=146

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 49/113 (44%), Positives = 63/113 (56%), Gaps = 7/113 (6%)

Query  11   VPTLLLEHRSRKSGKNFVAPLLYIT----DRNNVIVVASALGQAENPQWYRNLPPNPDTH  66
            +P + L    RKSG   +    Y+T    D N V++VAS  G   NP WYRNL  NPD  
Sbjct  36   MPVVELHTVGRKSG---LPRSCYLTSPVHDSNRVVLVASKGGDDRNPDWYRNLQSNPDAE  92

Query  67   IQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRPR  119
            + I   RR V A  AS+DE+A LWP+ V AY  + + Q  T+R IPV+I   R
Sbjct  93   LVIHGSRRKVHARTASADEKAELWPQIVAAYKGYANYQQRTDRDIPVVICEFR  145


>gi|227121348|gb|ACP19380.1| hypothetical protein [Micromonospora sp. Tu 6368]
Length=151

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 38/107 (36%), Positives = 63/107 (59%), Gaps = 0/107 (0%)

Query  12   PTLLLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLPPNPDTHIQIGS  71
            PTLLL  R R++G+    PL+Y  D + ++++AS     +NP WY+NL  +P+  +Q+ +
Sbjct  42   PTLLLTTRGRRTGRQIRTPLIYGRDGDRIVLIASNGASPKNPHWYQNLVADPEVRVQVRA  101

Query  72   DRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
            DR      +A+++ER RLW      +  +D   + T R IPV++L P
Sbjct  102  DRFVATGRIATAEERPRLWELMAKIFPKYDEYATETTRDIPVVVLEP  148


>gi|84498004|ref|ZP_00996801.1| hypothetical protein JNB_17993 [Janibacter sp. HTCC2649]
 gi|84381504|gb|EAP97387.1| hypothetical protein JNB_17993 [Janibacter sp. HTCC2649]
Length=136

 Score = 82.0 bits (201),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 45/117 (39%), Positives = 64/117 (55%), Gaps = 2/117 (1%)

Query  2    RLGAGFRKPVPTLLLEHRSRKSGKNFVAPLLYI-TDRNNVIVVASALGQAENPQWYRNLP  60
            ++G  F    P +L+ H   K+G   V PL+Y   D  ++I+VAS  G  +NP W+ N+ 
Sbjct  18   KVGGPFEG-APMILIHHLGAKTGTERVTPLMYFPQDDGSMIIVASKAGAPDNPDWFHNVR  76

Query  61   PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILR  117
             NP   +++G+   PV A V   DER  LWPR V+    F   Q  T+R IPV+ LR
Sbjct  77   ANPRFDVEVGTQTFPVEAEVLPRDERDALWPRLVEKAPGFGGYQENTDRIIPVVRLR  133


>gi|333992336|ref|YP_004524950.1| hypothetical protein JDM601_3696 [Mycobacterium sp. JDM601]
 gi|333488304|gb|AEF37696.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=159

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 46/118 (39%), Positives = 68/118 (58%), Gaps = 1/118 (0%)

Query  2    RLGAGFRKPVPTL-LLEHRSRKSGKNFVAPLLYITDRNNVIVVASALGQAENPQWYRNLP  60
            RLG      VP + +L    RK+G+   +PLL++ + + VI+VAS  G+A NP WY NL 
Sbjct  42   RLGTKHFGEVPEVGILTTTGRKTGEPRESPLLFLREGDRVILVASQGGRATNPMWYGNLK  101

Query  61   PNPDTHIQIGSDRRPVRAVVASSDERARLWPRPVDAYADFDSCQSWTERGIPVIILRP  118
             NP    +I ++   +RA  A   ERA  WP+    Y DF + ++WT+R IP++I  P
Sbjct  102  ANPQVSFRIRNEVLRLRARDADESERAAYWPKLDAMYPDFVNYRAWTDREIPIVICEP  159



Lambda     K      H
   0.321    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129033565320


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40