BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3182

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610318|ref|NP_217698.1|  hypothetical protein Rv3182 [Mycoba...   233    5e-60
gi|340628158|ref|YP_004746610.1|  hypothetical protein MCAN_31971...   231    4e-59
gi|167970149|ref|ZP_02552426.1|  hypothetical protein MtubH3_1979...   229    8e-59
gi|15842763|ref|NP_337800.1|  hypothetical protein MT3274 [Mycoba...   195    2e-48
gi|240169975|ref|ZP_04748634.1|  hypothetical protein MkanA1_1172...   182    1e-44
gi|302559947|ref|ZP_07312289.1|  RelE family toxin-antitoxin syst...   121    4e-26
gi|271963920|ref|YP_003338116.1|  hypothetical protein Sros_2394 ...   112    2e-23
gi|302865403|ref|YP_003834040.1|  hypothetical protein Micau_0900...   110    8e-23
gi|311899628|dbj|BAJ32036.1|  hypothetical protein KSE_62730 [Kit...   110    1e-22
gi|288920054|ref|ZP_06414373.1|  conserved hypothetical protein [...   109    1e-22
gi|229492906|ref|ZP_04386702.1|  helix-turn-helix domain protein ...   109    1e-22
gi|297563265|ref|YP_003682239.1|  hypothetical protein Ndas_4344 ...   109    2e-22
gi|302559461|ref|ZP_07311803.1|  RelE family toxin-antitoxin syst...   108    2e-22
gi|315501948|ref|YP_004080835.1|  hypothetical protein ML5_1144 [...   108    2e-22
gi|336176639|ref|YP_004582014.1|  hypothetical protein FsymDg_055...   106    1e-21
gi|302542944|ref|ZP_07295286.1|  RelE family toxin-antitoxin syst...   105    2e-21
gi|271968264|ref|YP_003342460.1|  hypothetical protein Sros_7018 ...   105    3e-21
gi|340627033|ref|YP_004745485.1|  hypothetical protein MCAN_20451...   103    6e-21
gi|288917053|ref|ZP_06411424.1|  conserved hypothetical protein [...   103    6e-21
gi|167970449|ref|ZP_02552726.1|  hypothetical protein MtubH3_2142...   103    7e-21
gi|308369596|ref|ZP_07418378.2|  hypothetical protein TMBG_00562 ...   103    1e-20
gi|298525524|ref|ZP_07012933.1|  conserved hypothetical protein [...   102    1e-20
gi|15609159|ref|NP_216538.1|  hypothetical protein Rv2022c [Mycob...   102    1e-20
gi|213692219|ref|YP_002322805.1|  hypothetical protein Blon_1339 ...   102    2e-20
gi|320458345|dbj|BAJ68966.1|  conserved hypothetical protein [Bif...   102    2e-20
gi|254551045|ref|ZP_05141492.1|  hypothetical protein Mtube_11371...   101    3e-20
gi|253798923|ref|YP_003031924.1|  hypothetical protein TBMG_01961...   101    4e-20
gi|331695180|ref|YP_004331419.1|  hypothetical protein Psed_1323 ...   100    7e-20
gi|291453168|ref|ZP_06592558.1|  helix-turn-helix domain-containi...   100    8e-20
gi|86739105|ref|YP_479505.1|  hypothetical protein Francci3_0389 ...   100    9e-20
gi|290960635|ref|YP_003491817.1|  hypothetical protein SCAB_62611...  99.4    1e-19
gi|288919842|ref|ZP_06414166.1|  conserved hypothetical protein [...  99.4    2e-19
gi|336176260|ref|YP_004581635.1|  hypothetical protein FsymDg_013...  99.4    2e-19
gi|312195718|ref|YP_004015779.1|  hypothetical protein FraEuI1c_1...  98.6    3e-19
gi|288919656|ref|ZP_06413984.1|  conserved hypothetical protein [...  98.6    3e-19
gi|315501166|ref|YP_004080053.1|  hypothetical protein ML5_0350 [...  98.2    3e-19
gi|271967922|ref|YP_003342118.1|  hypothetical protein Sros_6665 ...  98.2    4e-19
gi|145593885|ref|YP_001158182.1|  helix-turn-helix domain-contain...  96.7    1e-18
gi|209523286|ref|ZP_03271842.1|  conserved hypothetical protein [...  96.7    1e-18
gi|41410367|ref|NP_963203.1|  hypothetical protein MAP4269c [Myco...  95.5    2e-18
gi|119025958|ref|YP_909803.1|  hypothetical protein BAD_0940 [Bif...  94.7    4e-18
gi|86741568|ref|YP_481968.1|  hypothetical protein Francci3_2881 ...  94.7    4e-18
gi|161613416|ref|YP_001587381.1|  hypothetical protein SPAB_01130...  94.4    5e-18
gi|308187401|ref|YP_003931532.1|  hypothetical protein Pvag_1899 ...  94.0    7e-18
gi|302865474|ref|YP_003834111.1|  hypothetical protein Micau_0971...  94.0    7e-18
gi|166368889|ref|YP_001661162.1|  hypothetical protein MAE_61480 ...  93.6    9e-18
gi|158317563|ref|YP_001510071.1|  helix-turn-helix domain-contain...  93.6    1e-17
gi|93004788|ref|YP_579235.1|  hypothetical protein Pcryo_2476 [Ps...  91.7    3e-17
gi|227114558|ref|ZP_03828214.1|  hypothetical protein PcarbP_1643...  91.3    4e-17
gi|148641529|ref|YP_001274373.1|  hypothetical protein PsycPRwf_2...  90.5    7e-17


>gi|15610318|ref|NP_217698.1| hypothetical protein Rv3182 [Mycobacterium tuberculosis H37Rv]
 gi|31794360|ref|NP_856853.1| hypothetical protein Mb3208 [Mycobacterium bovis AF2122/97]
 gi|121639068|ref|YP_979292.1| hypothetical protein BCG_3208 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 70 more sequence titles
 Length=114

 Score =  233 bits (595),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 113/114 (99%), Positives = 114/114 (100%), Gaps = 0/114 (0%)

Query  1    LAVILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPA  60
            +AVILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPA
Sbjct  1    MAVILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPA  60

Query  61   GTSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG  114
            GTSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG
Sbjct  61   GTSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG  114


>gi|340628158|ref|YP_004746610.1| hypothetical protein MCAN_31971 [Mycobacterium canettii CIPT 
140010059]
 gi|340006348|emb|CCC45528.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=114

 Score =  231 bits (588),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 112/114 (99%), Positives = 113/114 (99%), Gaps = 0/114 (0%)

Query  1    LAVILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPA  60
            +AVILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPA
Sbjct  1    MAVILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPA  60

Query  61   GTSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG  114
            GTSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQR ENWLASEHGGG
Sbjct  61   GTSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRFENWLASEHGGG  114


>gi|167970149|ref|ZP_02552426.1| hypothetical protein MtubH3_19798 [Mycobacterium tuberculosis 
H37Ra]
 gi|254365807|ref|ZP_04981852.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254552275|ref|ZP_05142722.1| hypothetical protein Mtube_17793 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|134151320|gb|EBA43365.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|339296016|gb|AEJ48127.1| hypothetical protein CCDC5079_2937 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339299627|gb|AEJ51737.1| hypothetical protein CCDC5180_2900 [Mycobacterium tuberculosis 
CCDC5180]
Length=112

 Score =  229 bits (585),  Expect = 8e-59, Method: Compositional matrix adjust.
 Identities = 111/112 (99%), Positives = 112/112 (100%), Gaps = 0/112 (0%)

Query  3    VILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT  62
            +ILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT
Sbjct  1    MILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT  60

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG  114
            SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG
Sbjct  61   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG  112


>gi|15842763|ref|NP_337800.1| hypothetical protein MT3274 [Mycobacterium tuberculosis CDC1551]
 gi|13883087|gb|AAK47614.1| hypothetical protein MT3274 [Mycobacterium tuberculosis CDC1551]
Length=94

 Score =  195 bits (495),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 94/94 (100%), Positives = 94/94 (100%), Gaps = 0/94 (0%)

Query  21   MASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGTSIRILFAFDPARQAILLL  80
            MASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGTSIRILFAFDPARQAILLL
Sbjct  1    MASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGTSIRILFAFDPARQAILLL  60

Query  81   GGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG  114
            GGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG
Sbjct  61   GGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG  94


>gi|240169975|ref|ZP_04748634.1| hypothetical protein MkanA1_11729 [Mycobacterium kansasii ATCC 
12478]
Length=117

 Score =  182 bits (463),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 86/110 (79%), Positives = 98/110 (90%), Gaps = 0/110 (0%)

Query  3    VILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT  62
            VILL +VE W+F+L+ +AMA+VTGAIDLLE+EGPTLGRP VDKV  S FH++KELRPAGT
Sbjct  7    VILLEEVEAWYFSLDDEAMAAVTGAIDLLELEGPTLGRPTVDKVKGSKFHSLKELRPAGT  66

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHG  112
            SIRILF FDP RQAILLLGGDKAGNWKRWY+ NIP+ADQR ENWLA+E G
Sbjct  67   SIRILFIFDPRRQAILLLGGDKAGNWKRWYEENIPVADQRYENWLANEGG  116


>gi|302559947|ref|ZP_07312289.1| RelE family toxin-antitoxin system, toxin component [Streptomyces 
griseoflavus Tu4000]
 gi|302477565|gb|EFL40658.1| RelE family toxin-antitoxin system, toxin component [Streptomyces 
griseoflavus Tu4000]
Length=128

 Score =  121 bits (303),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 59/108 (55%), Positives = 77/108 (72%), Gaps = 6/108 (5%)

Query  3    VILLPQVERWFFALNRD---AMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP  59
            V+L+ +V  WF AL  D   +   V  AID+L   GPTLGRP+VD++  +  H++KELRP
Sbjct  9    VVLVTEVAAWFEALAEDDWDSAEQVEDAIDMLAATGPTLGRPLVDRIKGADSHHLKELRP  68

Query  60   AGT---SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSE  104
              T    IRILFAFDP R+A+LL+ GDKAGNW+RWYD NIPIA++R +
Sbjct  69   GSTGSSEIRILFAFDPVRRAVLLVAGDKAGNWQRWYDANIPIAEKRYQ  116


>gi|271963920|ref|YP_003338116.1| hypothetical protein Sros_2394 [Streptosporangium roseum DSM 
43021]
 gi|270507095|gb|ACZ85373.1| conserved hypothetical protein [Streptosporangium roseum DSM 
43021]
Length=123

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 58/111 (53%), Positives = 76/111 (69%), Gaps = 6/111 (5%)

Query  3    VILLPQVERWFFAL---NRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP  59
            + L P+VE W+  +   + +    +  AID L  EGPT  RP+VD++  S FHNMKELRP
Sbjct  5    ISLHPEVEAWYLEICVSDSETADLIKDAIDQLAEEGPTARRPLVDRLQGSRFHNMKELRP  64

Query  60   --AGTS-IRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWL  107
              +G+S IRI+FAFDPAR+AI L+ GDKAGNW+ WY   IP+AD+R E  L
Sbjct  65   PSSGSSEIRIIFAFDPAREAIFLVAGDKAGNWEGWYRQAIPLADERFEEHL  115


>gi|302865403|ref|YP_003834040.1| hypothetical protein Micau_0900 [Micromonospora aurantiaca ATCC 
27029]
 gi|302568262|gb|ADL44464.1| hypothetical protein Micau_0900 [Micromonospora aurantiaca ATCC 
27029]
Length=120

 Score =  110 bits (274),  Expect = 8e-23, Method: Compositional matrix adjust.
 Identities = 54/105 (52%), Positives = 71/105 (68%), Gaps = 2/105 (1%)

Query  3    VILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT  62
            V L+ +V +W   L+  A A V  AIDLL   GP LGRP+VD ++ S+  N+KELRP   
Sbjct  8    VYLVDEVRQWLDTLDASAHARVVQAIDLLAEHGPGLGRPLVDTIHGSSMANLKELRPG--  65

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWL  107
            ++RILFAFDP R +ILL+ GDK+G WK WY   IP+A+ R E +L
Sbjct  66   TVRILFAFDPWRSSILLVAGDKSGRWKTWYQEAIPVAEHRYELYL  110


>gi|311899628|dbj|BAJ32036.1| hypothetical protein KSE_62730 [Kitasatospora setae KM-6054]
Length=112

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 56/102 (55%), Positives = 67/102 (66%), Gaps = 6/102 (5%)

Query  12   WFFALNRD---AMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP---AGTSIR  65
            WF  L+ D       V  A+D L  EGPTLGRP+VD++  S  H+MKELRP     + IR
Sbjct  4    WFIRLSEDEPEVADQVAAAVDKLAEEGPTLGRPLVDRIKRSRHHHMKELRPRVGGESEIR  63

Query  66   ILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWL  107
            ILFAFDP R+AILL+ GDK+G W  WYD NIPIAD R +  L
Sbjct  64   ILFAFDPEREAILLVAGDKSGQWNLWYDLNIPIADDRFDRHL  105


>gi|288920054|ref|ZP_06414373.1| conserved hypothetical protein [Frankia sp. EUN1f]
 gi|288348537|gb|EFC82795.1| conserved hypothetical protein [Frankia sp. EUN1f]
Length=121

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 55/112 (50%), Positives = 72/112 (65%), Gaps = 6/112 (5%)

Query  3    VILLPQVERWFFALNRDAMAS---VTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP  59
            ++L P VE WF  L R    S   V+ AID+L   GP LGRP+VD++  S +H+MKELRP
Sbjct  4    ILLHPAVEDWFLDLCRTDPTSADLVSEAIDVLAENGPALGRPLVDRLKGSIYHHMKELRP  63

Query  60   AG---TSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLA  108
                 T IR++F FDP R+AI L+ GDKAG W+ WY   IP+AD+R  + L 
Sbjct  64   GSAGSTEIRMIFVFDPRREAIFLVAGDKAGAWREWYRTAIPLADERFTDHLT  115


>gi|229492906|ref|ZP_04386702.1| helix-turn-helix domain protein [Rhodococcus erythropolis SK121]
 gi|229320180|gb|EEN86005.1| helix-turn-helix domain protein [Rhodococcus erythropolis SK121]
Length=118

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 51/95 (54%), Positives = 64/95 (68%), Gaps = 3/95 (3%)

Query  9    VERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT---SIR  65
            VE W   L++ +   V  A++LLE  GP LGRP+VD V  S   NMKELRP  +    +R
Sbjct  11   VEDWLAQLDQSSYEQVVAALELLEERGPQLGRPLVDTVTASRHKNMKELRPGSSGRSELR  70

Query  66   ILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIAD  100
            +LFAFDP R+AILL+ GDK+G W +WY  NIPIAD
Sbjct  71   VLFAFDPHRKAILLIAGDKSGQWTKWYKKNIPIAD  105


>gi|297563265|ref|YP_003682239.1| hypothetical protein Ndas_4344 [Nocardiopsis dassonvillei subsp. 
dassonvillei DSM 43111]
 gi|296847713|gb|ADH69733.1| Protein of unknown function DUF2137 [Nocardiopsis dassonvillei 
subsp. dassonvillei DSM 43111]
Length=122

 Score =  109 bits (272),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 51/106 (49%), Positives = 67/106 (64%), Gaps = 6/106 (5%)

Query  3    VILLPQVERWFFALNRDAMASVT---GAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP  59
            +++L  VE W+  L  D   + T    A+  LE  GP L RP+ D+V  S  HN+KELRP
Sbjct  4    ILMLEPVEEWYLKLRADDPVTATRFDAALSQLESHGPDLTRPLADRVKGSRIHNLKELRP  63

Query  60   AGT---SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQR  102
              +    IR+LF FDP RQA+LL+ GDK+G W RWY  NIP+A+QR
Sbjct  64   GSSGRSEIRVLFVFDPERQAVLLVAGDKSGQWNRWYQKNIPVAEQR  109


>gi|302559461|ref|ZP_07311803.1| RelE family toxin-antitoxin system, toxin component [Streptomyces 
griseoflavus Tu4000]
 gi|302477079|gb|EFL40172.1| RelE family toxin-antitoxin system, toxin component [Streptomyces 
griseoflavus Tu4000]
Length=130

 Score =  108 bits (271),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 53/116 (46%), Positives = 74/116 (64%), Gaps = 6/116 (5%)

Query  5    LLPQVERWFFALNRDAMAS---VTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG  61
            L P VE W   L  +  A+   +  AID+L + GP+LGRP+VD+++    HN+KELRP  
Sbjct  10   LHPAVESWLLKLAEEDPAAADLIETAIDMLAVSGPSLGRPLVDRLSGCRTHNLKELRPGS  69

Query  62   ---TSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG  114
               T +RILF FDP R+AILL+ GDKAG W+ WY  ++P+A+ R   +LA+    G
Sbjct  70   SGRTEVRILFVFDPRREAILLVAGDKAGRWRDWYRESVPLAEARYHEYLAAADEAG  125


>gi|315501948|ref|YP_004080835.1| hypothetical protein ML5_1144 [Micromonospora sp. L5]
 gi|315408567|gb|ADU06684.1| hypothetical protein ML5_1144 [Micromonospora sp. L5]
Length=120

 Score =  108 bits (271),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 53/105 (51%), Positives = 70/105 (67%), Gaps = 2/105 (1%)

Query  3    VILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT  62
            V L+ +V +W   L+    A V  AIDLL   GP LGRP+VD ++ S+  N+KELRP   
Sbjct  8    VYLVDEVRQWLDTLDASTHARVVQAIDLLAEHGPGLGRPLVDTIHGSSMANLKELRPG--  65

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWL  107
            ++RILFAFDP R +ILL+ GDK+G WK WY   IP+A+ R E +L
Sbjct  66   TVRILFAFDPWRSSILLVAGDKSGRWKTWYQEAIPVAEHRYELYL  110


>gi|336176639|ref|YP_004582014.1| hypothetical protein FsymDg_0559 [Frankia symbiont of Datisca 
glomerata]
 gi|334857619|gb|AEH08093.1| Protein of unknown function DUF2137 [Frankia symbiont of Datisca 
glomerata]
Length=140

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 70/106 (67%), Gaps = 2/106 (1%)

Query  3    VILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT  62
            V L+ +V  W   L+    A V  AIDLL   GP LGRP+VD ++ S+  N+KELRP   
Sbjct  27   VYLVNEVRDWIDGLDAATHARVVQAIDLLAETGPGLGRPLVDTISGSSLPNLKELRPG--  84

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLA  108
            ++RILF FDP R +ILL+ GDKAG W  WYD  IP+A+QR +++L 
Sbjct  85   TVRILFCFDPWRSSILLVAGDKAGQWNAWYDEAIPLAEQRYKSYLV  130


>gi|302542944|ref|ZP_07295286.1| RelE family toxin-antitoxin system, toxin component [Streptomyces 
hygroscopicus ATCC 53653]
 gi|302460562|gb|EFL23655.1| RelE family toxin-antitoxin system, toxin component [Streptomyces 
himastatinicus ATCC 53653]
Length=113

 Score =  105 bits (263),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 50/102 (50%), Positives = 68/102 (67%), Gaps = 6/102 (5%)

Query  12   WFFAL---NRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---TSIR  65
            WF AL   +  +  +V  A++LL   GP LGRP+ D ++ S  HN+KELRP     T IR
Sbjct  4    WFLALCVNDPHSADAVEQAVELLAEVGPGLGRPMADVIHGSRLHNLKELRPGSAGRTEIR  63

Query  66   ILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWL  107
            ILF FDP R+ ILL+ GDKAG W+RWYD  +P+A++R + +L
Sbjct  64   ILFVFDPEREGILLVAGDKAGQWRRWYDEAVPLAEKRYQQYL  105


>gi|271968264|ref|YP_003342460.1| hypothetical protein Sros_7018 [Streptosporangium roseum DSM 
43021]
 gi|270511439|gb|ACZ89717.1| conserved hypothetical protein [Streptosporangium roseum DSM 
43021]
Length=128

 Score =  105 bits (261),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 52/116 (45%), Positives = 68/116 (59%), Gaps = 6/116 (5%)

Query  3    VILLPQVERWFFAL---NRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP  59
            ++LL  VE WF  L   + D+   +  AID L   GP LGRP+VD + D   +N+KELRP
Sbjct  5    IVLLEPVESWFLKLCESDPDSATLIERAIDRLAEAGPALGRPLVDTLEDDDLNNLKELRP  64

Query  60   AG---TSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHG  112
                 + IRI+F FDP R+AI L+ GDKAG W RWYD  IP+A  R   +   +  
Sbjct  65   GSRGRSEIRIVFIFDPDREAIFLVAGDKAGKWSRWYDEAIPLAKSRYAEYCTEKKA  120


>gi|340627033|ref|YP_004745485.1| hypothetical protein MCAN_20451 [Mycobacterium canettii CIPT 
140010059]
 gi|340005223|emb|CCC44377.1| putative uncharacterized protein [Mycobacterium canettii CIPT 
140010059]
Length=138

 Score =  103 bits (258),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 50/99 (51%), Positives = 64/99 (65%), Gaps = 3/99 (3%)

Query  6    LPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---T  62
            + ++  W   L+R+    V  AI++LE EGP LGRP+VD V  S   NMKELRP     +
Sbjct  18   VERISAWLNGLDRETYELVFAAIEVLEEEGPALGRPLVDTVRGSRHKNMKELRPGSQGRS  77

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQ  101
             +RILFAFDPARQAI+L  G+KAG W +WY   I  AD+
Sbjct  78   EVRILFAFDPARQAIMLAAGNKAGRWSQWYHEKIKAADE  116


>gi|288917053|ref|ZP_06411424.1| conserved hypothetical protein [Frankia sp. EUN1f]
 gi|288351593|gb|EFC85799.1| conserved hypothetical protein [Frankia sp. EUN1f]
Length=120

 Score =  103 bits (258),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 54/109 (50%), Positives = 71/109 (66%), Gaps = 6/109 (5%)

Query  5    LLPQVERWFFAL---NRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPA-  60
            ++ +V  W   L   +RD    V  A+  L  EGP+LGRP+VD++  S  HN+KELRPA 
Sbjct  7    IVSEVREWLHDLRRTDRDTAILVGQAVTALLDEGPSLGRPLVDRIKGSRLHNLKELRPAS  66

Query  61   -GTS-IRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWL  107
             GTS +RILF FDP R+A+LL+ GDKAG W  WYD  IP+A+ R   +L
Sbjct  67   SGTSEVRILFVFDPERRAVLLVAGDKAGRWSAWYDRAIPLAEARYALYL  115


>gi|167970449|ref|ZP_02552726.1| hypothetical protein MtubH3_21423 [Mycobacterium tuberculosis 
H37Ra]
 gi|254232193|ref|ZP_04925520.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|308370892|ref|ZP_07423111.2| hypothetical protein TMCG_00110 [Mycobacterium tuberculosis SUMu003]
 17 more sequence titles
 Length=121

 Score =  103 bits (258),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 52/107 (49%), Positives = 66/107 (62%), Gaps = 3/107 (2%)

Query  6    LPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---T  62
            + ++  W   L+R+    V  AI++LE EGP LG P+VD V  S   NMKELRP     +
Sbjct  1    MERISAWLNGLDRETYELVFAAIEVLEEEGPALGCPLVDTVRGSRHKNMKELRPGSQGRS  60

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLAS  109
             +RILFAFDPARQAI+L  G+KAG W +WYD  I  AD+     LA 
Sbjct  61   EVRILFAFDPARQAIMLAAGNKAGRWTQWYDEKIKAADEMFAEHLAQ  107


>gi|308369596|ref|ZP_07418378.2| hypothetical protein TMBG_00562 [Mycobacterium tuberculosis SUMu002]
 gi|308372121|ref|ZP_07427469.2| hypothetical protein TMDG_02847 [Mycobacterium tuberculosis SUMu004]
 gi|308377895|ref|ZP_07480804.2| hypothetical protein TMIG_00681 [Mycobacterium tuberculosis SUMu009]
 gi|308403106|ref|ZP_07493767.2| hypothetical protein TMLG_03878 [Mycobacterium tuberculosis SUMu012]
 gi|308327080|gb|EFP15931.1| hypothetical protein TMBG_00562 [Mycobacterium tuberculosis SUMu002]
 gi|308334356|gb|EFP23207.1| hypothetical protein TMDG_02847 [Mycobacterium tuberculosis SUMu004]
 gi|308354268|gb|EFP43119.1| hypothetical protein TMIG_00681 [Mycobacterium tuberculosis SUMu009]
 gi|308365762|gb|EFP54613.1| hypothetical protein TMLG_03878 [Mycobacterium tuberculosis SUMu012]
Length=127

 Score =  103 bits (256),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 50/99 (51%), Positives = 64/99 (65%), Gaps = 3/99 (3%)

Query  6    LPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---T  62
            + ++  W   L+R+    V  AI++LE EGP LG P+VD V  S   NMKELRP     +
Sbjct  7    VERISAWLNGLDRETYELVFAAIEVLEEEGPALGCPLVDTVRGSRHKNMKELRPGSQGRS  66

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQ  101
             +RILFAFDPARQAI+L  G+KAG W +WYD  I  AD+
Sbjct  67   EVRILFAFDPARQAIMLAAGNKAGRWTQWYDEKIKAADE  105


>gi|298525524|ref|ZP_07012933.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495318|gb|EFI30612.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=201

 Score =  102 bits (255),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 52/107 (49%), Positives = 66/107 (62%), Gaps = 3/107 (2%)

Query  6    LPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---T  62
            + ++  W   L+R+    V  AI++LE EGP LG P+VD V  S   NMKELRP     +
Sbjct  81   VERISAWLNGLDRETYELVFAAIEVLEEEGPALGCPLVDTVRGSRHKNMKELRPGSQGRS  140

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLAS  109
             +RILFAFDPARQAI+L  G+KAG W +WYD  I  AD+     LA 
Sbjct  141  EVRILFAFDPARQAIMLAAGNKAGRWTQWYDEKIKAADEMFAEHLAQ  187


>gi|15609159|ref|NP_216538.1| hypothetical protein Rv2022c [Mycobacterium tuberculosis H37Rv]
 gi|15841505|ref|NP_336542.1| hypothetical protein MT2078 [Mycobacterium tuberculosis CDC1551]
 gi|31793202|ref|NP_855695.1| hypothetical protein Mb2045c [Mycobacterium bovis AF2122/97]
 34 more sequence titles
 Length=201

 Score =  102 bits (255),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 52/107 (49%), Positives = 66/107 (62%), Gaps = 3/107 (2%)

Query  6    LPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---T  62
            + ++  W   L+R+    V  AI++LE EGP LG P+VD V  S   NMKELRP     +
Sbjct  81   VERISAWLNGLDRETYELVFAAIEVLEEEGPALGCPLVDTVRGSRHKNMKELRPGSQGRS  140

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLAS  109
             +RILFAFDPARQAI+L  G+KAG W +WYD  I  AD+     LA 
Sbjct  141  EVRILFAFDPARQAIMLAAGNKAGRWTQWYDEKIKAADEMFAEHLAQ  187


>gi|213692219|ref|YP_002322805.1| hypothetical protein Blon_1339 [Bifidobacterium longum subsp. 
infantis ATCC 15697]
 gi|213523680|gb|ACJ52427.1| conserved hypothetical protein [Bifidobacterium longum subsp. 
infantis ATCC 15697]
Length=115

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 50/111 (46%), Positives = 70/111 (64%), Gaps = 3/111 (2%)

Query  4    ILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP--AG  61
            I +  ++ W   L+R++   +  A+++L+ +GP L RP+V K+  S   +MKELRP  AG
Sbjct  4    IEMEPIKDWLTGLDRESKLQILAAVEVLKEQGPNLRRPLVGKIEGSKIKSMKELRPGSAG  63

Query  62   TS-IRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEH  111
             S IRILF FDP RQAI+L+GGDK   W +WY   IP A+ R E WL   +
Sbjct  64   KSEIRILFVFDPNRQAIMLVGGDKQNKWSKWYKTAIPEAEDRYEAWLKQNN  114


>gi|320458345|dbj|BAJ68966.1| conserved hypothetical protein [Bifidobacterium longum subsp. 
infantis ATCC 15697]
Length=110

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 49/106 (47%), Positives = 68/106 (65%), Gaps = 3/106 (2%)

Query  9    VERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP--AGTS-IR  65
            ++ W   L+R++   +  A+++L+ +GP L RP+V K+  S   +MKELRP  AG S IR
Sbjct  4    IKDWLTGLDRESKLQILAAVEVLKEQGPNLRRPLVGKIEGSKIKSMKELRPGSAGKSEIR  63

Query  66   ILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEH  111
            ILF FDP RQAI+L+GGDK   W +WY   IP A+ R E WL   +
Sbjct  64   ILFVFDPNRQAIMLVGGDKQNKWSKWYKTAIPEAEDRYEAWLKQNN  109


>gi|254551045|ref|ZP_05141492.1| hypothetical protein Mtube_11371 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=138

 Score =  101 bits (252),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 49/99 (50%), Positives = 63/99 (64%), Gaps = 3/99 (3%)

Query  6    LPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---T  62
            + ++  W   L+R+    V  AI++LE EGP LG P+ D V  S   NMKELRP     +
Sbjct  18   VERISAWLNGLDRETYELVFAAIEVLEEEGPALGCPLADTVRGSRHKNMKELRPGSQGRS  77

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQ  101
             +RILFAFDPARQAI+L  G+KAG W +WYD  I  AD+
Sbjct  78   EVRILFAFDPARQAIMLAAGNKAGRWTQWYDEKIKAADE  116


>gi|253798923|ref|YP_003031924.1| hypothetical protein TBMG_01961 [Mycobacterium tuberculosis KZN 
1435]
 gi|289554196|ref|ZP_06443406.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289762176|ref|ZP_06521554.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 8 more sequence titles
 Length=201

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 49/99 (50%), Positives = 63/99 (64%), Gaps = 3/99 (3%)

Query  6    LPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---T  62
            + ++  W   L+R+    V  AI++LE EGP LG P+ D V  S   NMKELRP     +
Sbjct  81   VERISAWLNGLDRETYELVFAAIEVLEEEGPALGCPLADTVRGSRHKNMKELRPGSQGRS  140

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQ  101
             +RILFAFDPARQAI+L  G+KAG W +WYD  I  AD+
Sbjct  141  EVRILFAFDPARQAIMLAAGNKAGRWTQWYDEKIKAADE  179


>gi|331695180|ref|YP_004331419.1| hypothetical protein Psed_1323 [Pseudonocardia dioxanivorans 
CB1190]
 gi|326949869|gb|AEA23566.1| hypothetical protein Psed_1323 [Pseudonocardia dioxanivorans 
CB1190]
Length=124

 Score =  100 bits (249),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 56/119 (48%), Positives = 73/119 (62%), Gaps = 9/119 (7%)

Query  3    VILLPQVERWFFALNR---DAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP  59
            + L  +V  W   L R   D    V  AI+ L   GP LGRP+VD++  S+ HN+KELRP
Sbjct  4    IYLTDEVHEWLDELLRGDEDTHYQVVSAIEALAEGGPNLGRPLVDRIKGSSVHNLKELRP  63

Query  60   --AGTS-IRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWL---ASEHG  112
              AG+S +RILFAFDP R ++LL+ GDKAG W  WY   IP A+Q  E ++   A+E G
Sbjct  64   GSAGSSEVRILFAFDPWRSSVLLVAGDKAGRWTEWYRQAIPRAEQLYETYVKERAAEEG  122


>gi|291453168|ref|ZP_06592558.1| helix-turn-helix domain-containing protein [Streptomyces albus 
J1074]
 gi|291356117|gb|EFE83019.1| helix-turn-helix domain-containing protein [Streptomyces albus 
J1074]
Length=120

 Score =  100 bits (248),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 53/114 (47%), Positives = 71/114 (63%), Gaps = 5/114 (4%)

Query  3    VILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT  62
            + L+ +V  W  +L+  A A V  A+D+L  EGP LGRP+VD +  S   N+KELRP   
Sbjct  7    IFLVDEVRVWLASLDGAAHARVVQALDVLAEEGPALGRPLVDTLRGSAVANLKELRPG--  64

Query  63   SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLAS---EHGG  113
            ++RILFAFDP R +ILL+ GDK+G    WY   IP+A+QR   +L     E GG
Sbjct  65   TVRILFAFDPWRSSILLVAGDKSGQRTEWYQEAIPLAEQRYALYLKEREREEGG  118


>gi|86739105|ref|YP_479505.1| hypothetical protein Francci3_0389 [Frankia sp. CcI3]
 gi|86565967|gb|ABD09776.1| conserved hypothetical protein [Frankia sp. CcI3]
Length=130

 Score =  100 bits (248),  Expect = 9e-20, Method: Compositional matrix adjust.
 Identities = 51/110 (47%), Positives = 67/110 (61%), Gaps = 6/110 (5%)

Query  8    QVERWFFALNR---DAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---  61
            +V  W  +L R   D+  SV  AID+L   GP LGRP+VD +  ST  N+KELRP     
Sbjct  15   EVREWLRSLRREEPDSYRSVNAAIDMLAEAGPALGRPLVDTLKGSTISNLKELRPRSGRE  74

Query  62   TSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEH  111
             +IR++F FDP  QA+LL+ G+KAG+W  WY   IP A+   + WLA E 
Sbjct  75   VAIRVIFVFDPWSQAVLLVAGNKAGDWSHWYRAAIPAAEVVYDGWLAVER  124


>gi|290960635|ref|YP_003491817.1| hypothetical protein SCAB_62611 [Streptomyces scabiei 87.22]
 gi|260650161|emb|CBG73277.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length=129

 Score = 99.4 bits (246),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 45/88 (52%), Positives = 60/88 (69%), Gaps = 3/88 (3%)

Query  17   NRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPA---GTSIRILFAFDPA  73
            +RD +  V+ A+  L+ EGP LGRP+VD +  S   N+KELRP     T +R+LF FDP 
Sbjct  26   DRDTLIQVSQAVTALQEEGPALGRPLVDTIKGSALSNLKELRPGSAGATEVRLLFVFDPD  85

Query  74   RQAILLLGGDKAGNWKRWYDNNIPIADQ  101
            RQA++L+GGDKAGNW  WY   +P A+Q
Sbjct  86   RQAVILVGGDKAGNWSGWYRVAVPQAEQ  113


>gi|288919842|ref|ZP_06414166.1| conserved hypothetical protein [Frankia sp. EUN1f]
 gi|288348757|gb|EFC83010.1| conserved hypothetical protein [Frankia sp. EUN1f]
Length=99

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 48/88 (55%), Positives = 61/88 (70%), Gaps = 2/88 (2%)

Query  20   AMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGTSIRILFAFDPARQAILL  79
            A A V  AIDLL   GP LGRP+VD ++ S+  N+KELRP   ++RILF FDP R +ILL
Sbjct  3    AHARVVQAIDLLAEAGPGLGRPLVDTISGSSLPNLKELRPG--TVRILFCFDPWRSSILL  60

Query  80   LGGDKAGNWKRWYDNNIPIADQRSENWL  107
            + GDKAG W  WY   IP+A+QR + +L
Sbjct  61   VAGDKAGQWNAWYAEAIPLAEQRYKTYL  88


>gi|336176260|ref|YP_004581635.1| hypothetical protein FsymDg_0134 [Frankia symbiont of Datisca 
glomerata]
 gi|334857240|gb|AEH07714.1| Protein of unknown function DUF2137 [Frankia symbiont of Datisca 
glomerata]
Length=131

 Score = 99.4 bits (246),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 53/116 (46%), Positives = 70/116 (61%), Gaps = 6/116 (5%)

Query  2    AVILLPQVERWFFALNRD---AMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELR  58
            A+ + P+V  W  AL +    A  SV  AID+L   GP LGRP+VD +  ST  N+KELR
Sbjct  10   AIKVAPEVREWLRALRQTDPGAYRSVNVAIDMLAEIGPGLGRPLVDTLQGSTVKNLKELR  69

Query  59   PAG---TSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEH  111
            P      +I+++F FDP  QA+LL+ G+KAG+W RWY   IP A+     WLA E 
Sbjct  70   PRSGRDVAIQVIFVFDPWSQAVLLVAGNKAGDWSRWYRTAIPAAEVAYGGWLAVER  125


>gi|312195718|ref|YP_004015779.1| hypothetical protein FraEuI1c_1853 [Frankia sp. EuI1c]
 gi|311227054|gb|ADP79909.1| protein of unknown function DUF891 [Frankia sp. EuI1c]
Length=140

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 52/110 (48%), Positives = 67/110 (61%), Gaps = 6/110 (5%)

Query  8    QVERWFFALNRD---AMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---  61
            +V  W  AL +       SV  AID+L   GP LGRPVVD +  S   N+KELRP     
Sbjct  25   EVRDWLRALRQADPVTYRSVNVAIDMLADAGPALGRPVVDTLAGSEIKNLKELRPRSGRT  84

Query  62   TSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEH  111
             +IRILF FDP  QA+LL+ G+KAG+W  WY+  IP+A+   + WLA+E 
Sbjct  85   VAIRILFVFDPWSQAVLLIAGNKAGDWTGWYETAIPVAEAAYDGWLAAER  134


>gi|288919656|ref|ZP_06413984.1| conserved hypothetical protein [Frankia sp. EUN1f]
 gi|288348945|gb|EFC83194.1| conserved hypothetical protein [Frankia sp. EUN1f]
Length=140

 Score = 98.6 bits (244),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 51/110 (47%), Positives = 68/110 (62%), Gaps = 6/110 (5%)

Query  8    QVERWFFALNRDAMA---SVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---  61
            +V  W + L +   A   SV  AID+L   GP LGRP+VD +  ST  N+KELRP     
Sbjct  25   EVREWLYVLRQSDPATYRSVNIAIDMLAEIGPGLGRPLVDTLQGSTIKNLKELRPRSGRD  84

Query  62   TSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEH  111
             +IR++F FDP  QA+LL+ G+KAG+W RWY   IP+A+    +WLA E 
Sbjct  85   VAIRVIFVFDPWSQAVLLVAGNKAGDWARWYRTAIPMAETAYGDWLAFER  134


>gi|315501166|ref|YP_004080053.1| hypothetical protein ML5_0350 [Micromonospora sp. L5]
 gi|315407785|gb|ADU05902.1| hypothetical protein ML5_0350 [Micromonospora sp. L5]
Length=123

 Score = 98.2 bits (243),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 51/115 (45%), Positives = 68/115 (60%), Gaps = 6/115 (5%)

Query  3    VILLPQVERWF---FALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP  59
            +++  QVE +    + L+RD+   V  AI +LE  GP  GRP+VD +  S   N+KELRP
Sbjct  5    ILMTGQVEEFLDQLYVLDRDSHRLVNQAILVLERNGPAEGRPLVDSITASRLSNLKELRP  64

Query  60   AG---TSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEH  111
                 T IRILF FDP R A+LL+ GDK+G W RWY   IP A+Q  + +L    
Sbjct  65   PSAGRTEIRILFVFDPWRSAVLLVAGDKSGQWTRWYREAIPEAEQLYDTYLKERQ  119


>gi|271967922|ref|YP_003342118.1| hypothetical protein Sros_6665 [Streptosporangium roseum DSM 
43021]
 gi|270511097|gb|ACZ89375.1| conserved hypothetical protein [Streptosporangium roseum DSM 
43021]
Length=127

 Score = 98.2 bits (243),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 50/107 (47%), Positives = 66/107 (62%), Gaps = 6/107 (5%)

Query  8    QVERWFFAL---NRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT--  62
            +V  W  A+   +R     +  AI  L   GP  GRP+VD++  S   NMKELRP  +  
Sbjct  10   EVREWLHAMRAGDRATSRLIGQAIQTLVEIGPDPGRPLVDRITGSAVRNMKELRPGSSGR  69

Query  63   -SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLA  108
              IRILFAFDP R A+LL+ GDKAG+W+ WYD  IP+A++R   W+A
Sbjct  70   SEIRILFAFDPRRSAVLLVAGDKAGHWEAWYDKAIPLAEERFAEWVA  116


>gi|145593885|ref|YP_001158182.1| helix-turn-helix domain-containing protein [Salinispora tropica 
CNB-440]
 gi|145594207|ref|YP_001158504.1| helix-turn-helix domain-containing protein [Salinispora tropica 
CNB-440]
 gi|145303222|gb|ABP53804.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
 gi|145303544|gb|ABP54126.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
Length=225

 Score = 96.7 bits (239),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 48/95 (51%), Positives = 64/95 (68%), Gaps = 2/95 (2%)

Query  3   VILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGT  62
           + L+ +V+ W   L+    A V  AIDLL   GP LGRP+VD ++ S   N+KELRPA  
Sbjct  8   IYLVNEVQEWMDGLDPLTHARVVQAIDLLAEAGPGLGRPLVDTIHGSALANLKELRPA--  65

Query  63  SIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIP  97
           ++RILFAFDP R +ILL+ GDKAG W++WY  + P
Sbjct  66  TVRILFAFDPWRSSILLVAGDKAGRWQQWYTPSDP  100


>gi|209523286|ref|ZP_03271842.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209496437|gb|EDZ96736.1| conserved hypothetical protein [Arthrospira maxima CS-328]
Length=118

 Score = 96.7 bits (239),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 54/109 (50%), Positives = 67/109 (62%), Gaps = 3/109 (2%)

Query  3    VILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELR--PA  60
            VI  P  + WF    ++    V   + LL   GP+LGRP VD +  S+  NMKELR    
Sbjct  5    VIFDPDFKLWFDQQEQELQDEVFSVLILLMEFGPSLGRPRVDTLKGSSIKNMKELRIQYK  64

Query  61   GTSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLAS  109
            G   RILFAFD  RQAILL+GG+K GN KRWY  NIPIA++R E++L  
Sbjct  65   GEPWRILFAFDTERQAILLVGGNKTGN-KRWYKENIPIAERRYEHYLEQ  112


>gi|41410367|ref|NP_963203.1| hypothetical protein MAP4269c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41399201|gb|AAS06819.1| hypothetical protein MAP_4269c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336460762|gb|EGO39649.1| hypothetical protein MAPs_37390 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=134

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 4/100 (4%)

Query  6    LPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRP----AG  61
            L  +E W  AL+ +   ++  A++ LE  GP   RP VD +  S   NMKELRP    AG
Sbjct  8    LTLIEAWMDALDDEEYDNLIAALEQLEEHGPITRRPFVDTLEGSRHPNMKELRPRPTKAG  67

Query  62   TSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQ  101
              IR+LFAFD   +AI+L+ GDKAGNW +WY  +IPIAD+
Sbjct  68   AHIRVLFAFDTRSRAIMLIAGDKAGNWSKWYAKHIPIADE  107


>gi|119025958|ref|YP_909803.1| hypothetical protein BAD_0940 [Bifidobacterium adolescentis ATCC 
15703]
 gi|118765542|dbj|BAF39721.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
Length=172

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 46/105 (44%), Positives = 63/105 (60%), Gaps = 4/105 (3%)

Query  12   WFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTF-HNMKELRPAGT---SIRIL  67
            W   L+  +   +  A+ LLE +GP L RP+V K+  S+   +MKELRP  +    IRIL
Sbjct  63   WLNTLDHKSRVQILAAVSLLEEQGPDLKRPIVGKIKGSSLIPSMKELRPGSSGRSEIRIL  122

Query  68   FAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHG  112
            F FDP R+AI+L+GGDK   W +WY   IP A++R   WL   +G
Sbjct  123  FVFDPKRKAIMLVGGDKQRKWDKWYRKAIPEAERRYLVWLEERYG  167


>gi|86741568|ref|YP_481968.1| hypothetical protein Francci3_2881 [Frankia sp. CcI3]
 gi|86568430|gb|ABD12239.1| conserved hypothetical protein [Frankia sp. CcI3]
Length=116

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 51/92 (56%), Positives = 63/92 (69%), Gaps = 3/92 (3%)

Query  12  WFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPA--GTS-IRILF  68
           W   L+  + A V  AID L   GP+LGRP+VD++  S  HN+KELRPA  GTS IR+LF
Sbjct  8   WVNELDPRSRALVVDAIDRLADAGPSLGRPLVDRLVGSEIHNLKELRPASAGTSEIRVLF  67

Query  69  AFDPARQAILLLGGDKAGNWKRWYDNNIPIAD  100
            FDP R AILL+GGDK+G+W  WY   IP A+
Sbjct  68  VFDPWRCAILLVGGDKSGDWSGWYRTAIPRAE  99


>gi|161613416|ref|YP_001587381.1| hypothetical protein SPAB_01130 [Salmonella enterica subsp. enterica 
serovar Paratyphi B str. SPB7]
 gi|161362780|gb|ABX66548.1| hypothetical protein SPAB_01130 [Salmonella enterica subsp. enterica 
serovar Paratyphi B str. SPB7]
Length=117

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 48/102 (48%), Positives = 61/102 (60%), Gaps = 2/102 (1%)

Query  10   ERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELR--PAGTSIRIL  67
            +RWF +LN     SV  A+ +L  +GP L RP  D V  S + NMKELR    G  IR  
Sbjct  11   DRWFASLNDTDRVSVLAALLVLREKGPGLSRPYADTVRGSRYSNMKELRIQSRGEPIRAF  70

Query  68   FAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLAS  109
            FAFDP R  I+L  G+K GN KR+YD  +P+AD+   NWL +
Sbjct  71   FAFDPTRTGIVLCAGNKVGNEKRFYDEMLPVADREFTNWLNT  112


>gi|308187401|ref|YP_003931532.1| hypothetical protein Pvag_1899 [Pantoea vagans C9-1]
 gi|308057911|gb|ADO10083.1| hypothetical protein Pvag_1899 [Pantoea vagans C9-1]
Length=115

 Score = 94.0 bits (232),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 48/104 (47%), Positives = 62/104 (60%), Gaps = 2/104 (1%)

Query  8    QVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELR--PAGTSIR  65
            + +RWF  LN    A V  A+ +L  +GP L RP  D +  S + NMKELR    G  IR
Sbjct  7    RFDRWFTLLNDSDRACVLAALMVLREKGPGLSRPYADTIKGSAYSNMKELRIQSRGDPIR  66

Query  66   ILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLAS  109
              FAFDP R AI+L  G+KAGN KR+Y   +P+AD+   +WL S
Sbjct  67   AFFAFDPNRTAIVLCAGNKAGNEKRFYREMLPVADREFTHWLKS  110


>gi|302865474|ref|YP_003834111.1| hypothetical protein Micau_0971 [Micromonospora aurantiaca ATCC 
27029]
 gi|302568333|gb|ADL44535.1| protein of unknown function DUF891 [Micromonospora aurantiaca 
ATCC 27029]
Length=139

 Score = 94.0 bits (232),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 51/116 (44%), Positives = 69/116 (60%), Gaps = 6/116 (5%)

Query  2    AVILLPQVERWFFAL---NRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELR  58
            +V +  +V  W   L   +  +  SV  A+D L   GP LGRP+VD +  S+  N+KELR
Sbjct  18   SVRVTGEVRHWLRDLRDHDPSSYESVRVAVDKLAEVGPGLGRPLVDTLRGSSLRNLKELR  77

Query  59   PAG---TSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEH  111
            P      +IR+LF FDP  QA+LL+ G+KAGNW RWY  +IP A+   + WL SE 
Sbjct  78   PRSGRDVAIRVLFVFDPWSQAVLLVAGNKAGNWTRWYRQHIPAAEVAYKAWLDSER  133


>gi|166368889|ref|YP_001661162.1| hypothetical protein MAE_61480 [Microcystis aeruginosa NIES-843]
 gi|166091262|dbj|BAG05970.1| hypothetical protein MAE_61480 [Microcystis aeruginosa NIES-843]
Length=85

 Score = 93.6 bits (231),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 47/74 (64%), Positives = 55/74 (75%), Gaps = 3/74 (4%)

Query  36   PTLGRPVVDKVNDSTFHNMKELR--PAGTSIRILFAFDPARQAILLLGGDKAGNWKRWYD  93
            P LGRP VD +  S+F NMKELR    G   R+LFAFDP RQAILL+GG+K+GN KRWY 
Sbjct  5    PALGRPRVDTIEGSSFKNMKELRIQYKGEPWRVLFAFDPHRQAILLVGGNKSGN-KRWYK  63

Query  94   NNIPIADQRSENWL  107
             NIPIADQR + +L
Sbjct  64   ENIPIADQRYQKYL  77


>gi|158317563|ref|YP_001510071.1| helix-turn-helix domain-containing protein [Frankia sp. EAN1pec]
 gi|158112968|gb|ABW15165.1| helix-turn-helix domain protein [Frankia sp. EAN1pec]
Length=115

 Score = 93.6 bits (231),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 47/92 (52%), Positives = 59/92 (65%), Gaps = 3/92 (3%)

Query  23   SVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAG---TSIRILFAFDPARQAILL  79
            SV  AID+L   GP LGRP+VD +  ST  N+KELRP      +IR++F FDP  QA+LL
Sbjct  18   SVNIAIDMLAEIGPGLGRPLVDTLQGSTIKNLKELRPRSGRDVAIRVIFVFDPWSQAVLL  77

Query  80   LGGDKAGNWKRWYDNNIPIADQRSENWLASEH  111
            + G+KAG+W RWY   IP A+     WLA E 
Sbjct  78   VAGNKAGDWSRWYRTAIPTAEVAYGEWLAFER  109


>gi|93004788|ref|YP_579235.1| hypothetical protein Pcryo_2476 [Psychrobacter cryohalolentis 
K5]
 gi|92395350|gb|ABE76253.1| conserved hypothetical protein [Psychrobacter cryohalolentis 
K5]
Length=115

 Score = 91.7 bits (226),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 51/110 (47%), Positives = 64/110 (59%), Gaps = 3/110 (2%)

Query  2    AVILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELR--P  59
             VI      +WF   +      V  A+ +LE +GP+LGRP+VD V DS F NMKELR   
Sbjct  3    TVITTELFNQWFDQQDESTQEKVLAALVVLEQQGPSLGRPLVDTVYDSKFTNMKELRIQH  62

Query  60   AGTSIRILFAFDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLAS  109
             G  +R  FAFDP RQAI+L  GDK GN KR+Y   +  ADQ+ E  L +
Sbjct  63   RGKPLRAFFAFDPKRQAIVLCIGDK-GNRKRFYKEMLATADQQYECHLRT  111


>gi|227114558|ref|ZP_03828214.1| hypothetical protein PcarbP_16433 [Pectobacterium carotovorum 
subsp. brasiliensis PBR1692]
Length=117

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 48/105 (46%), Positives = 58/105 (56%), Gaps = 2/105 (1%)

Query  12   WFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELR--PAGTSIRILFA  69
            WF  LN    A V  A+ +L  +GP L RP  D V  S + NMKELR    G  IR  FA
Sbjct  13   WFSTLNDRDRAYVLAALIVLREKGPMLSRPYADTVKGSRYSNMKELRIQSGGMPIRAFFA  72

Query  70   FDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG  114
            FDP R  ILL  G+K+GN KR+YD  IP+AD+    +L      G
Sbjct  73   FDPHRTGILLCAGNKSGNEKRFYDEMIPLADREFTTYLKKSEKKG  117


>gi|148641529|ref|YP_001274373.1| hypothetical protein PsycPRwf_2395 [Psychrobacter sp. PRwf-1]
 gi|148573281|gb|ABQ95335.1| Uncharacterized protein-like protein [Psychrobacter sp. PRwf-1]
Length=115

 Score = 90.5 bits (223),  Expect = 7e-17, Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 62/100 (62%), Gaps = 3/100 (3%)

Query  12   WFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPA--GTSIRILFA  69
            W +  ++     V  A+ +L+ +GP+LGRP+VD V DS F NMKELR    G  +R  FA
Sbjct  13   WLYQQDQSTQEKVLAALVVLQQQGPSLGRPLVDTVYDSKFTNMKELRVQHRGKPLRAFFA  72

Query  70   FDPARQAILLLGGDKAGNWKRWYDNNIPIADQRSENWLAS  109
            FDP RQAI+L  GDK GN KR+Y   +  ADQ+ E  L +
Sbjct  73   FDPKRQAIVLCIGDK-GNNKRFYKEMLATADQQYEYHLKT  111



Lambda     K      H
   0.320    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131546402790


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40