BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3183
Length=109
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610319|ref|NP_217699.1| transcriptional regulatory protein ... 213 8e-54
gi|308372449|ref|ZP_07428736.2| transcriptional regulator [Mycob... 208 2e-52
gi|254552276|ref|ZP_05142723.1| transcriptional regulator [Mycob... 181 4e-44
gi|240169974|ref|ZP_04748633.1| putative transcriptional regulat... 173 9e-42
gi|311899627|dbj|BAJ32035.1| putative transcriptional regulator ... 90.1 9e-17
gi|271968265|ref|YP_003342461.1| XRE family transcriptional regu... 83.2 1e-14
gi|300790532|ref|YP_003770823.1| XRE family transcriptional regu... 77.0 8e-13
gi|271968262|ref|YP_003342458.1| XRE family transcriptional regu... 76.3 1e-12
gi|290960636|ref|YP_003491818.1| DNA-binding protein [Streptomyc... 73.6 9e-12
gi|290956142|ref|YP_003487324.1| transcriptional regulator [Stre... 70.5 7e-11
gi|302550878|ref|ZP_07303220.1| predicted protein [Streptomyces ... 69.7 1e-10
gi|158317564|ref|YP_001510072.1| XRE family transcriptional regu... 67.8 5e-10
gi|86741569|ref|YP_481969.1| XRE family transcriptional regulato... 67.4 6e-10
gi|288919655|ref|ZP_06413983.1| transcriptional regulator, XRE f... 67.4 7e-10
gi|302559948|ref|ZP_07312290.1| xre family toxin-antitoxin syste... 67.0 9e-10
gi|255327117|ref|ZP_05368192.1| transcriptional regulator [Rothi... 67.0 9e-10
gi|297159044|gb|ADI08756.1| putative transcriptional regulator [... 66.6 1e-09
gi|86739106|ref|YP_479506.1| XRE family transcriptional regulato... 64.7 5e-09
gi|15609158|ref|NP_216537.1| transcriptional regulatory protein ... 63.9 8e-09
gi|331695181|ref|YP_004331420.1| helix-turn-helix domain-contain... 63.5 1e-08
gi|336176261|ref|YP_004581636.1| helix-turn-helix domain-contain... 63.2 1e-08
gi|139439319|ref|ZP_01772761.1| Hypothetical protein COLAER_0177... 63.2 1e-08
gi|288917052|ref|ZP_06411423.1| transcriptional regulator, XRE f... 62.4 2e-08
gi|271963921|ref|YP_003338117.1| XRE family transcriptional regu... 62.4 2e-08
gi|271969745|ref|YP_003343941.1| XRE family transcriptional regu... 62.0 3e-08
gi|340627032|ref|YP_004745484.1| putative transcriptional regula... 62.0 3e-08
gi|83956372|ref|ZP_00964797.1| possible transcriptional regulato... 60.8 6e-08
gi|295105862|emb|CBL03405.1| Helix-turn-helix. [Gordonibacter pa... 60.1 1e-07
gi|288920055|ref|ZP_06414374.1| transcriptional regulator, XRE f... 59.7 1e-07
gi|302865475|ref|YP_003834112.1| helix-turn-helix domain-contain... 59.7 1e-07
gi|339445401|ref|YP_004711405.1| hypothetical protein EGYY_18710... 59.3 2e-07
gi|302865402|ref|YP_003834039.1| helix-turn-helix domain-contain... 58.9 3e-07
gi|312195719|ref|YP_004015780.1| hypothetical protein FraEuI1c_1... 58.5 3e-07
gi|320010824|gb|ADW05674.1| helix-turn-helix domain protein [Str... 57.4 7e-07
gi|302560054|ref|ZP_07312396.1| helix-turn-helix domain-containi... 57.4 8e-07
gi|291298156|ref|YP_003509434.1| XRE family transcriptional regu... 57.4 8e-07
gi|229492897|ref|ZP_04386693.1| transcriptional regulator, XRE f... 57.0 8e-07
gi|271967923|ref|YP_003342119.1| helix-turn-helix domain-contain... 57.0 8e-07
gi|315501167|ref|YP_004080054.1| helix-turn-helix domain-contain... 56.2 1e-06
gi|213692218|ref|YP_002322804.1| transcriptional regulator, XRE ... 55.1 3e-06
gi|257791669|ref|YP_003182275.1| XRE family transcriptional regu... 54.3 5e-06
gi|336176640|ref|YP_004582015.1| helix-turn-helix domain-contain... 54.3 6e-06
gi|297563266|ref|YP_003682240.1| XRE family transcriptional regu... 53.5 9e-06
gi|41410366|ref|NP_963202.1| hypothetical protein MAP4268c [Myco... 53.5 1e-05
gi|17228099|ref|NP_484647.1| hypothetical protein all0603 [Nosto... 51.6 4e-05
gi|302559460|ref|ZP_07311802.1| xre family toxin-antitoxin syste... 51.2 4e-05
gi|239906136|ref|YP_002952875.1| Xre family DNA-binding protein ... 51.2 5e-05
gi|333911975|ref|YP_004485707.1| helix-turn-helix domain-contain... 50.8 6e-05
gi|260775777|ref|ZP_05884673.1| transcriptional regulator XRE fa... 50.8 6e-05
gi|340776371|ref|ZP_08696314.1| putative transcriptional regulat... 50.4 9e-05
>gi|15610319|ref|NP_217699.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15842764|ref|NP_337801.1| hypothetical protein MT3275 [Mycobacterium tuberculosis CDC1551]
gi|31794361|ref|NP_856854.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
61 more sequence titles
Length=109
Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM
Sbjct 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVELTA 109
GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVELTA
Sbjct 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVELTA 109
>gi|308372449|ref|ZP_07428736.2| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
gi|308374797|ref|ZP_07437440.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
gi|308376015|ref|ZP_07445835.2| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
15 more sequence titles
Length=107
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/107 (100%), Positives = 107/107 (100%), Gaps = 0/107 (0%)
Query 3 MARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGV 62
MARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGV
Sbjct 1 MARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGV 60
Query 63 SQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVELTA 109
SQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVELTA
Sbjct 61 SQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVELTA 107
>gi|254552276|ref|ZP_05142723.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
Length=98
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/93 (100%), Positives = 93/93 (100%), Gaps = 0/93 (0%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM
Sbjct 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGH 93
GVSQARVSKLESGDLSHTELGTLQAYVAALGGH
Sbjct 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGH 93
>gi|240169974|ref|ZP_04748633.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=109
Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 89/109 (82%), Positives = 100/109 (92%), Gaps = 0/109 (0%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
M +ARNWR+IRA+AVAQGR+D RA AR+EM DAV A RLA+IRKA GHARQADVAALM
Sbjct 1 MIVARNWREIRAEAVAQGRLDPARADAARKEMHDAVQAQRLADIRKAHGHARQADVAALM 60
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVELTA 109
GVSQARVSKLESGDLSHTELGTLQ+YVAALGG+LRIVA+FGE++VELTA
Sbjct 61 GVSQARVSKLESGDLSHTELGTLQSYVAALGGNLRIVADFGESSVELTA 109
>gi|311899627|dbj|BAJ32035.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
Length=103
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (66%), Gaps = 5/102 (4%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
MTMAR+W+D+R + V D +R A R + V A+RLAEIR+ Q +VA L+
Sbjct 1 MTMARSWKDVRTEVVT----DEERVAAHRTRLDAEVRAYRLAEIRREQDLT-QTEVAELI 55
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGE 102
GV+Q VS+LE GDL T LGTL+ YV ALGG L +VA+FG+
Sbjct 56 GVTQPNVSRLERGDLEGTSLGTLREYVEALGGRLHLVADFGD 97
>gi|271968265|ref|YP_003342461.1| XRE family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270511440|gb|ACZ89718.1| putative transcriptional regulator, XRE family [Streptosporangium
roseum DSM 43021]
Length=109
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/109 (44%), Positives = 72/109 (67%), Gaps = 3/109 (2%)
Query 1 MTMARNWRDIRADA--VAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAA 58
M+ AR W++++A+A + +R A A E+ V + L E+RK+LG QADVAA
Sbjct 1 MSPARRWQEVKAEAHRLHPELAAPERQAAAEAELDAYVAGYHLKELRKSLGKT-QADVAA 59
Query 59 LMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
+G+SQ+RVS++E+GDL EL TL+AY AALGGH+ + G ++V++
Sbjct 60 ALGISQSRVSQIENGDLDAMELETLRAYAAALGGHVDVTISVGPHSVKV 108
>gi|300790532|ref|YP_003770823.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299800046|gb|ADJ50421.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340532217|gb|AEK47422.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=121
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/112 (42%), Positives = 70/112 (63%), Gaps = 7/112 (6%)
Query 3 MARNWRDIRADAVAQGR-----VDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVA 57
M R+W++++A+ +A R VD R A ARE VL RLA++R+ G + Q ++A
Sbjct 2 MTRSWKEVKAEKLAIDREAGRDVDAARIA-AREATEAYVLGFRLAQLREDAGVS-QTELA 59
Query 58 ALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVELTA 109
MGVSQ R+S+LE GD L TL+ Y+ ALGG +R+VA+F + V ++A
Sbjct 60 RSMGVSQPRISQLEQGDPGQMALDTLRRYITALGGRMRVVADFDDRDVTVSA 111
>gi|271968262|ref|YP_003342458.1| XRE family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270511437|gb|ACZ89715.1| putative transcriptional regulator, XRE family [Streptosporangium
roseum DSM 43021]
Length=112
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/108 (47%), Positives = 71/108 (66%), Gaps = 13/108 (12%)
Query 4 ARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLA----HRLAEIRKALGHARQADVAAL 59
A W ++RA+ V D Q A ++RD ++A ++LAE R+ LG RQ DVA
Sbjct 5 AVTWEELRAELVQPS--DEQEVA----QLRDGLVARQRAYQLAEARRKLGL-RQEDVAQA 57
Query 60 MGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
MGVSQAR+S++ESG +S E+ TL AYV ALGG L++VA+FG++ + L
Sbjct 58 MGVSQARISQIESGVIS--EVATLAAYVTALGGQLKVVADFGDSVMVL 103
>gi|290960636|ref|YP_003491818.1| DNA-binding protein [Streptomyces scabiei 87.22]
gi|260650162|emb|CBG73278.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
Length=112
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/69 (57%), Positives = 49/69 (72%), Gaps = 1/69 (1%)
Query 39 HRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVA 98
HRLAE+RK H Q VA MGV+QARVS++E G L +E+ TL AYV ALGG L+IVA
Sbjct 44 HRLAELRKRQ-HTTQVQVAEAMGVTQARVSRIEKGQLERSEVDTLAAYVKALGGKLKIVA 102
Query 99 EFGENTVEL 107
+FG+ + L
Sbjct 103 DFGDESYVL 111
>gi|290956142|ref|YP_003487324.1| transcriptional regulator [Streptomyces scabiei 87.22]
gi|260645668|emb|CBG68759.1| putative transcriptional regulatory protein [Streptomyces scabiei
87.22]
Length=111
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/72 (53%), Positives = 52/72 (73%), Gaps = 1/72 (1%)
Query 36 VLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLR 95
V A+RLAE+RK H Q VA ++GV+Q RVS +E G LS +E+ TL AYV ALGG L+
Sbjct 40 VRAYRLAEVRKR-QHMTQTAVAKILGVTQGRVSAIEKGALSRSEVDTLAAYVEALGGKLK 98
Query 96 IVAEFGENTVEL 107
+VA+FG+ ++ L
Sbjct 99 LVADFGDESLVL 110
>gi|302550878|ref|ZP_07303220.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
gi|302468496|gb|EFL31589.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
Length=117
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/66 (55%), Positives = 49/66 (75%), Gaps = 1/66 (1%)
Query 37 LAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRI 96
L H LAE+R+ G QA+VA MGVSQ RVS +E+GD+ ++ ++ AY+AALGGHLR+
Sbjct 39 LGHHLAELRRQRG-LTQAEVAEKMGVSQVRVSHMENGDIDRMQVESIAAYIAALGGHLRL 97
Query 97 VAEFGE 102
VA+ GE
Sbjct 98 VADIGE 103
>gi|158317564|ref|YP_001510072.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
gi|158112969|gb|ABW15166.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
Length=104
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/103 (45%), Positives = 59/103 (58%), Gaps = 4/103 (3%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
MT +W DIRAD + G D + A R + A LAE RK LG Q +VA LM
Sbjct 1 MTEFHDWDDIRAD-LHDG--DDEALAAERGRTEAWISAFHLAEERKRLGLT-QREVAELM 56
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGEN 103
GVS RVS++E+GDL E+ TL Y ALG LRI+ ++G +
Sbjct 57 GVSPGRVSQIENGDLDANEVATLSRYARALGARLRIIFDYGND 99
>gi|86741569|ref|YP_481969.1| XRE family transcriptional regulator [Frankia sp. CcI3]
gi|86568431|gb|ABD12240.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
Length=109
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/103 (42%), Positives = 61/103 (60%), Gaps = 6/103 (5%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
MT W D+RAD +A L A R + + HRLAE R+ LG Q +VA M
Sbjct 1 MTRFPRWNDVRADLIADAEETLTEA---RRRNQAYIDGHRLAERRRLLGLT-QTEVAEHM 56
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGEN 103
GVS++RVS++E GD+S ++ + YV ALGG ++I A FG++
Sbjct 57 GVSKSRVSQIERGDVSTVDV--IARYVQALGGQIQITAVFGDD 97
>gi|288919655|ref|ZP_06413983.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
gi|288348944|gb|EFC83193.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=104
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/103 (44%), Positives = 58/103 (57%), Gaps = 4/103 (3%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
MT +W DIRA+ Q D + A R + A LAE RK LG Q +VA LM
Sbjct 1 MTEFHDWDDIRAE---QHDGDDEALAAERGRTEAWISAFHLAEERKRLGLT-QREVAELM 56
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGEN 103
GVS RVS++E+GDL E+ TL Y ALG LRI+ ++G +
Sbjct 57 GVSPGRVSQIENGDLDANEVATLSRYARALGARLRIIFDYGND 99
>gi|302559948|ref|ZP_07312290.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces
griseoflavus Tu4000]
gi|302477566|gb|EFL40659.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces
griseoflavus Tu4000]
Length=112
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/67 (56%), Positives = 47/67 (71%), Gaps = 1/67 (1%)
Query 36 VLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLR 95
V AH+LAE+R+ Q VAA MGVS RVS +E G+L E+ TL+AYV ALGG LR
Sbjct 41 VRAHKLAEVRREQALT-QRQVAASMGVSAPRVSAIEHGELDRAEVATLRAYVEALGGRLR 99
Query 96 IVAEFGE 102
+VA+FG+
Sbjct 100 VVADFGD 106
>gi|255327117|ref|ZP_05368192.1| transcriptional regulator [Rothia mucilaginosa ATCC 25296]
gi|255295735|gb|EET75077.1| transcriptional regulator [Rothia mucilaginosa ATCC 25296]
Length=102
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/78 (48%), Positives = 49/78 (63%), Gaps = 1/78 (1%)
Query 30 EEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAA 89
EEM V A+RL E+R+ Q ++AA + VSQ VSKLE GDL T++ TL+ Y+ A
Sbjct 25 EEMIAEVRAYRLRELREQ-AQMTQQNIAAELNVSQNSVSKLERGDLDKTQISTLKRYIEA 83
Query 90 LGGHLRIVAEFGENTVEL 107
LGG L I A FG+ + L
Sbjct 84 LGGKLSIEANFGDTSYRL 101
>gi|297159044|gb|ADI08756.1| putative transcriptional regulator [Streptomyces bingchenggensis
BCW-1]
Length=112
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/67 (54%), Positives = 47/67 (71%), Gaps = 1/67 (1%)
Query 36 VLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLR 95
V AH+LAE+R+ Q VAA MGVS RVS +E G+L EL T+++YV ALGG LR
Sbjct 41 VRAHKLAEVRREQALT-QRQVAASMGVSAPRVSAIEHGELDRAELATIRSYVEALGGRLR 99
Query 96 IVAEFGE 102
+VA+FG+
Sbjct 100 VVADFGD 106
>gi|86739106|ref|YP_479506.1| XRE family transcriptional regulator [Frankia sp. CcI3]
gi|86565968|gb|ABD09777.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
Length=104
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/105 (43%), Positives = 59/105 (57%), Gaps = 8/105 (7%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLA--HRLAEIRKALGHARQADVAA 58
MT +W DIRA+ D AA+A E R A + LAE RK LG Q VA
Sbjct 1 MTEFHDWEDIRAELH-----DGDDAALAVERARTEAWASAYHLAEERKRLGLT-QRQVAD 54
Query 59 LMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGEN 103
LMGVS R+S++E+GDL E+ TL Y ALG +RI+ ++G +
Sbjct 55 LMGVSPGRISQIENGDLDVNEVATLSRYARALGARMRIIFDYGND 99
>gi|15609158|ref|NP_216537.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15841504|ref|NP_336541.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
gi|31793201|ref|NP_855694.1| hypothetical protein Mb2044c [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=101
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/107 (43%), Positives = 60/107 (57%), Gaps = 9/107 (8%)
Query 3 MARNWRDIRADAVAQGRVDLQRAAVAREE--MRDAVLAHRLAEIRKALGHARQADVAALM 60
MA RD+ DAV + R AV R + MRD V A RL E+R A Q VAAL
Sbjct 1 MAMTLRDM--DAVRP----VNREAVDRHKARMRDEVRAFRLRELRAAQSLT-QVQVAALA 53
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
+ Q+RVS +E+GD+ ++ TL+ YV+ALGG L I G+ T L
Sbjct 54 HIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTL 100
>gi|331695181|ref|YP_004331420.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
gi|326949870|gb|AEA23567.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
CB1190]
Length=102
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/101 (42%), Positives = 60/101 (60%), Gaps = 5/101 (4%)
Query 7 WRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQAR 66
W +IR + VA +R + + V AHRLAE RK G Q VA MGV+ R
Sbjct 6 WSEIRGEHVAA--AGEERVEQGKTRLLGQVRAHRLAETRKRRGLT-QRQVAQAMGVTVGR 62
Query 67 VSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
VS++E+G+L+ ++ L YV ALGGHL+IVA FG+ +++
Sbjct 63 VSQIENGELAGIDV--LDRYVHALGGHLQIVANFGDEQIKV 101
>gi|336176261|ref|YP_004581636.1| helix-turn-helix domain-containing protein [Frankia symbiont
of Datisca glomerata]
gi|334857241|gb|AEH07715.1| helix-turn-helix domain protein [Frankia symbiont of Datisca
glomerata]
Length=104
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/103 (43%), Positives = 58/103 (57%), Gaps = 4/103 (3%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
MT +W DIRA+ + G D + A R V A LAE R+ LG Q VA LM
Sbjct 1 MTEFHDWDDIRAE-LHDG--DGEALAAERARTEAWVSAFHLAEERRRLGLT-QRQVAELM 56
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGEN 103
GVS RVS++E+GDL E+ TL Y ALG +RI+ ++G +
Sbjct 57 GVSPGRVSQIENGDLDANEVATLSRYARALGARMRIIFDYGND 99
>gi|139439319|ref|ZP_01772761.1| Hypothetical protein COLAER_01777 [Collinsella aerofaciens ATCC
25986]
gi|133775343|gb|EBA39163.1| Hypothetical protein COLAER_01777 [Collinsella aerofaciens ATCC
25986]
Length=100
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/78 (49%), Positives = 47/78 (61%), Gaps = 1/78 (1%)
Query 30 EEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAA 89
E RD + A++LA+IR+ L QA VA MGVSQ RVS+LE G+L L TL Y +
Sbjct 22 ERTRDRIEAYKLAQIRR-LKDLTQASVAQSMGVSQKRVSELERGELGSMRLDTLSRYAES 80
Query 90 LGGHLRIVAEFGENTVEL 107
LGG L EF + TV L
Sbjct 81 LGGKLVASIEFPDRTVTL 98
>gi|288917052|ref|ZP_06411423.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
gi|288351592|gb|EFC85798.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=108
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/64 (57%), Positives = 45/64 (71%), Gaps = 1/64 (1%)
Query 38 AHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIV 97
AHRLAE+R+ LG QA+VA M V Q RVS +E ++ +EL TL AYV ALGG L I+
Sbjct 39 AHRLAEMRRRLG-LTQAEVADRMHVRQERVSAIERANIDASELRTLAAYVKALGGQLEII 97
Query 98 AEFG 101
A+FG
Sbjct 98 ADFG 101
>gi|271963921|ref|YP_003338117.1| XRE family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270507096|gb|ACZ85374.1| putative transcriptional regulator, XRE family [Streptosporangium
roseum DSM 43021]
Length=110
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/103 (41%), Positives = 64/103 (63%), Gaps = 7/103 (6%)
Query 6 NWRDIRADAVA-QGRVDLQRAA---VAREEMRDAVLAHRLAEIRKALGHARQADVAALMG 61
W D++A A A R D +RA AR+ V ++LAE+RKA G Q ++A +G
Sbjct 7 KWTDVKAKARALDPRSDAERAVGQEAARQRREAYVRGYQLAEMRKAAGIT-QVELAEALG 65
Query 62 VSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENT 104
V+QAR+SK+E+G++S ++ ++AYV ALGG + +VA G T
Sbjct 66 VTQARISKIENGEVSGIDV--VRAYVTALGGTVDLVATLGNRT 106
>gi|271969745|ref|YP_003343941.1| XRE family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270512920|gb|ACZ91198.1| putative transcriptional regulator, XRE family [Streptosporangium
roseum DSM 43021]
Length=106
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/112 (42%), Positives = 65/112 (59%), Gaps = 10/112 (8%)
Query 1 MTMARNWRDI----RADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADV 56
MT R WR+ RA A G ++R +R+ A RLAE+RK G Q V
Sbjct 1 MTGHRKWRESGHLERAIETAGG---VERFEAETLHLREEAQAWRLAEMRKRRGLT-QNQV 56
Query 57 AALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVELT 108
A MGVS RVS++E GD+S E+ L YVAALGG L+++A+FG+ ++++
Sbjct 57 AENMGVSVGRVSQIEKGDVSTREV--LDRYVAALGGTLKLIADFGDEQLKVS 106
>gi|340627032|ref|YP_004745484.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340005222|emb|CCC44376.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
Length=101
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/107 (43%), Positives = 59/107 (56%), Gaps = 9/107 (8%)
Query 3 MARNWRDIRADAVAQGRVDLQRAAVAREE--MRDAVLAHRLAEIRKALGHARQADVAALM 60
MA RD+ DAV + R AV R + MRD V A RL E+R A Q VA L
Sbjct 1 MAMTLRDM--DAVRP----VNREAVDRHKARMRDEVRAFRLRELRAAQSLT-QVQVAELA 53
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
+ Q+RVS +E+GD+ ++ TL+ YV+ALGG L I G+ T L
Sbjct 54 HIRQSRVSSIENGDIGTAQVNTLRKYVSALGGELDITVRLGDETFTL 100
>gi|83956372|ref|ZP_00964797.1| possible transcriptional regulatory protein [Sulfitobacter sp.
NAS-14.1]
gi|83839420|gb|EAP78603.1| possible transcriptional regulatory protein [Sulfitobacter sp.
NAS-14.1]
Length=131
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/65 (48%), Positives = 46/65 (71%), Gaps = 1/65 (1%)
Query 41 LAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEF 100
L EIRKAL QA++A +G++Q +S+ E +L+ T+L TL+ YV +GG+LRIVA+F
Sbjct 40 LTEIRKALS-VTQAELAKKVGMAQGDISRFEKAELAGTKLSTLERYVRGMGGNLRIVADF 98
Query 101 GENTV 105
+ TV
Sbjct 99 PDGTV 103
>gi|295105862|emb|CBL03405.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
Length=100
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 12/100 (12%)
Query 20 VDLQRAAVAR---EEMRD--------AVLAHRLAEIRKALGHARQADVAALMGVSQARVS 68
+D+ A+ R EEMRD V A+ LA+ RK Q +VAA MGVSQ RVS
Sbjct 1 MDIHEYAIKRGVTEEMRDQARRITQAKVDAYDLAQARKERDLT-QREVAAKMGVSQCRVS 59
Query 69 KLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVELT 108
+LE+G L+ + TL Y+A+LG L + AE+ + T+ LT
Sbjct 60 ELEAGRLATMRVDTLSRYIASLGRKLVLSAEWPDKTIPLT 99
>gi|288920055|ref|ZP_06414374.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
gi|288348538|gb|EFC82796.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=109
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/102 (39%), Positives = 58/102 (57%), Gaps = 8/102 (7%)
Query 6 NWRDIR-----ADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
NWR+++ AD ++R A R +M +V +LAEIR+ LG Q +A
Sbjct 5 NWREVKSKARAADPTWDNAERVERRAEMRAQMLASVSGAQLAEIRRQLG-VTQTQLAEAT 63
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGE 102
G++QAR+S++E+G L TL+AY+ LGGHL +VA G
Sbjct 64 GLTQARISQIENG--GAMGLDTLRAYITGLGGHLDVVARIGN 103
>gi|302865475|ref|YP_003834112.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca
ATCC 27029]
gi|315502022|ref|YP_004080909.1| helix-turn-helix domain-containing protein [Micromonospora sp.
L5]
gi|302568334|gb|ADL44536.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
27029]
gi|315408641|gb|ADU06758.1| helix-turn-helix domain protein [Micromonospora sp. L5]
Length=103
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/103 (41%), Positives = 59/103 (58%), Gaps = 5/103 (4%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
MT +W ++RA+ G + A AR + V A LAE RK LG Q VA +M
Sbjct 1 MTEFYHWDEVRAEL--GGDDEAYEAERARTDA--WVSAFHLAEERKRLGLT-QRQVAEIM 55
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGEN 103
GV+ RVS++E+GDL E+ TL Y ALG LRI+ ++G++
Sbjct 56 GVTPGRVSQIENGDLDVNEVATLSRYANALGARLRIIFDYGDD 98
>gi|339445401|ref|YP_004711405.1| hypothetical protein EGYY_18710 [Eggerthella sp. YY7918]
gi|338905153|dbj|BAK45004.1| hypothetical protein EGYY_18710 [Eggerthella sp. YY7918]
Length=111
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (43%), Positives = 47/73 (65%), Gaps = 1/73 (1%)
Query 36 VLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLR 95
+ + L + RKA H Q ++AA MGVSQ R+S LE+G + ++ TL+ Y+A LGG L
Sbjct 33 IKGYELQQARKAC-HITQKELAAQMGVSQKRISDLENGSIDVMQVDTLRRYIAGLGGTLE 91
Query 96 IVAEFGENTVELT 108
I A+ + T++LT
Sbjct 92 INAKLPQGTIQLT 104
>gi|302865402|ref|YP_003834039.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca
ATCC 27029]
gi|315501947|ref|YP_004080834.1| helix-turn-helix domain-containing protein [Micromonospora sp.
L5]
gi|302568261|gb|ADL44463.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
27029]
gi|315408566|gb|ADU06683.1| helix-turn-helix domain protein [Micromonospora sp. L5]
Length=105
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/106 (41%), Positives = 63/106 (60%), Gaps = 6/106 (5%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVA-REEMRDAVLAHRLAEIRKALGHARQADVAAL 59
M+ W+DIRAD VA RV + A A ++E+ V+ HRLAE+R+A G +Q VA
Sbjct 1 MSDYSRWQDIRADHVA--RVGGEDAVDAGKQELLAEVIGHRLAEVRRARGLTQQ-QVADR 57
Query 60 MGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTV 105
MGV++ RVS++E G +S E+ + + AALGG L F + +
Sbjct 58 MGVTKGRVSQIEQGKISGQEV--VARFAAALGGRLHQAIYFDDGDI 101
>gi|312195719|ref|YP_004015780.1| hypothetical protein FraEuI1c_1854 [Frankia sp. EuI1c]
gi|311227055|gb|ADP79910.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
Length=104
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/101 (43%), Positives = 56/101 (56%), Gaps = 4/101 (3%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
MT +W D+RA+ + G + A AR E + A LAE R LG Q VA M
Sbjct 1 MTEFYDWDDLRAE-LHDGDDEALAAERARTEA--WISAFHLAEERTRLGLT-QRQVAESM 56
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFG 101
GVS RVS++E+GDL E+ TL Y ALG LRI+ ++G
Sbjct 57 GVSPGRVSQIENGDLDANEVATLSRYARALGARLRIIFDYG 97
>gi|320010824|gb|ADW05674.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
33331]
Length=101
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/99 (40%), Positives = 55/99 (56%), Gaps = 5/99 (5%)
Query 9 DIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVS 68
D+ AD + R R + EM DA H LA +RKA G Q VA MGV+Q R+S
Sbjct 8 DLAADITPEKRA---RIDAIKSEMVDAERGHELASLRKAQGMT-QVQVAKAMGVTQGRIS 63
Query 69 KLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
++E G + + T+ AY+ A+GG L I+A G +V+L
Sbjct 64 QIERGGV-RLDTSTMSAYLHAIGGELTILATVGNVSVKL 101
>gi|302560054|ref|ZP_07312396.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus
Tu4000]
gi|302477672|gb|EFL40765.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus
Tu4000]
Length=101
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/99 (41%), Positives = 54/99 (55%), Gaps = 5/99 (5%)
Query 9 DIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVS 68
D+ AD + R +R + EM DA H LA +RKA G Q VA MGV+Q RVS
Sbjct 8 DLTADITPEKR---ERIDAIKAEMIDAERGHELATLRKAQGFT-QVQVAKAMGVTQGRVS 63
Query 69 KLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
++E G + + T+ AY+ A+GG L I A G +V L
Sbjct 64 QIERG-TARLDTSTMAAYLHAIGGELTITATVGNLSVRL 101
>gi|291298156|ref|YP_003509434.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
DSM 44728]
gi|290567376|gb|ADD40341.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
DSM 44728]
Length=101
Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/87 (43%), Positives = 54/87 (63%), Gaps = 4/87 (4%)
Query 23 QRAAV--AREEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTEL 80
QRA + ++EM DA H LA +RKA G Q+ VA MGV+Q R+S++ESG + +
Sbjct 17 QRARIDAIKQEMIDAERGHELASLRKAQGLT-QSQVAEAMGVTQGRISQIESGK-TRLDT 74
Query 81 GTLQAYVAALGGHLRIVAEFGENTVEL 107
T+ AY+ A+GG L I A G +++L
Sbjct 75 ETMAAYLHAIGGELTITATVGRLSIQL 101
>gi|229492897|ref|ZP_04386693.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
SK121]
gi|229320171|gb|EEN85996.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
SK121]
Length=104
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/68 (45%), Positives = 44/68 (65%), Gaps = 1/68 (1%)
Query 36 VLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLR 95
V A+RL E+RK Q +VA +GV Q R+S +E GDL+ ++ TL+ YV A+GG LR
Sbjct 33 VRAYRLKELRKNAALT-QGEVADRLGVGQNRISNIERGDLARIQIDTLRRYVEAVGGSLR 91
Query 96 IVAEFGEN 103
+ E G++
Sbjct 92 VEVELGDD 99
>gi|271967923|ref|YP_003342119.1| helix-turn-helix domain-containing protein [Streptosporangium
roseum DSM 43021]
gi|270511098|gb|ACZ89376.1| helix-turn-helix domain protein [Streptosporangium roseum DSM
43021]
Length=102
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/98 (46%), Positives = 55/98 (57%), Gaps = 6/98 (6%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
MT W D+R + + DL AA+ R + V A RLA +RK LG RQ DVA M
Sbjct 1 MTTFHRWDDVRHEVFDEE--DL--AAIDRGAA-ETVAAVRLAAMRKQLG-LRQVDVAERM 54
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVA 98
V Q RVS +E G+ + L TL AYV ALGG L +VA
Sbjct 55 HVRQERVSAIERGEPTSATLSTLIAYVRALGGQLEVVA 92
>gi|315501167|ref|YP_004080054.1| helix-turn-helix domain-containing protein [Micromonospora sp.
L5]
gi|315407786|gb|ADU05903.1| helix-turn-helix domain protein [Micromonospora sp. L5]
Length=106
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/77 (43%), Positives = 51/77 (67%), Gaps = 3/77 (3%)
Query 31 EMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAAL 90
EM D RLAE+RK Q VA+ MGVS ARVS++E+G+++ E+ L Y+ AL
Sbjct 32 EMLDQARGWRLAELRKRR-EMTQEQVASRMGVSVARVSQIEAGNVATQEV--LARYIGAL 88
Query 91 GGHLRIVAEFGENTVEL 107
GG L+++A+FG+ +++
Sbjct 89 GGTLKLIADFGDEQLKV 105
>gi|213692218|ref|YP_002322804.1| transcriptional regulator, XRE family [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|213523679|gb|ACJ52426.1| putative transcriptional regulator, XRE family [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|320458344|dbj|BAJ68965.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length=102
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/81 (45%), Positives = 49/81 (61%), Gaps = 8/81 (9%)
Query 25 AAVAREEMRDAVLAHRLAEIR-KALGHAR------QADVAALMGVSQARVSKLESGDLSH 77
+ ++REE+ DA L E+R L AR Q +A MGVSQ RVS LESGD+
Sbjct 12 SGISREEI-DAAKNRLLEEVRLYELKEARKRQDVTQKQLAERMGVSQKRVSSLESGDVDK 70
Query 78 TELGTLQAYVAALGGHLRIVA 98
TE+ TL+ Y+ A+GG L++ A
Sbjct 71 TEIRTLRRYLDAIGGKLQVNA 91
>gi|257791669|ref|YP_003182275.1| XRE family transcriptional regulator [Eggerthella lenta DSM 2243]
gi|317487865|ref|ZP_07946457.1| hypothetical protein HMPREF1023_00155 [Eggerthella sp. 1_3_56FAA]
gi|325830628|ref|ZP_08164049.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
gi|257475566|gb|ACV55886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
2243]
gi|316912991|gb|EFV34508.1| hypothetical protein HMPREF1023_00155 [Eggerthella sp. 1_3_56FAA]
gi|325487374|gb|EGC89816.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
Length=123
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/99 (38%), Positives = 56/99 (57%), Gaps = 11/99 (11%)
Query 9 DIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVS 68
DI + + +GR+ L A + E++ A RKA G Q +VAA MGVSQ R+S
Sbjct 16 DITPEMLEEGRL-LVEAKIKGYELQQA---------RKACGMT-QKEVAAKMGVSQKRIS 64
Query 69 KLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
LE+G + ++ TL+ Y+ +LGG L I A+ ++EL
Sbjct 65 DLENGSIDVMQVETLRRYITSLGGTLEITAKLPGVSLEL 103
>gi|336176640|ref|YP_004582015.1| helix-turn-helix domain-containing protein [Frankia symbiont
of Datisca glomerata]
gi|334857620|gb|AEH08094.1| helix-turn-helix domain protein [Frankia symbiont of Datisca
glomerata]
Length=105
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/105 (36%), Positives = 60/105 (58%), Gaps = 4/105 (3%)
Query 1 MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALM 60
M+ W D+RA+ VA+ + + A ++E+ + HRLAE+R+A G +Q VA M
Sbjct 1 MSGYVRWADVRAEQVARAGGE-EAVAAGKQELLAVAVGHRLAEVRRARGLTQQ-QVAERM 58
Query 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTV 105
GV++ R+S++E G LS ++ + Y AALGG L F + +
Sbjct 59 GVTKGRISQIEQGSLSGQDV--VARYAAALGGRLHQAIYFDDGDI 101
>gi|297563266|ref|YP_003682240.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847714|gb|ADH69734.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length=135
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/112 (36%), Positives = 65/112 (59%), Gaps = 14/112 (12%)
Query 4 ARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLA--------HRLAEIRKALGHARQAD 55
AR+WR+I+A++ Q D A+ + + DA A + L+ +RK G Q +
Sbjct 3 ARSWREIQAESEKQ---DPWFASEEAQAVFDAETARIEAERQGYALSSLRKESGRT-QKE 58
Query 56 VAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
VA +MGVSQAR+S++E G + EL L++Y++A+GG L + + G +V L
Sbjct 59 VAQIMGVSQARISQIEHGRIDSLEL--LRSYISAIGGELHLRVDQGPLSVTL 108
>gi|41410366|ref|NP_963202.1| hypothetical protein MAP4268c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41399200|gb|AAS06818.1| hypothetical protein MAP_4268c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460763|gb|EGO39650.1| Helix-turn-helix protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=102
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/66 (46%), Positives = 42/66 (64%), Gaps = 1/66 (1%)
Query 31 EMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAAL 90
EM V +RL E+R+A G+ Q +AA +GV Q RVS++E GDL + + TL+ YV A
Sbjct 24 EMDREVAQYRLRELREAAGYT-QTTLAAAIGVGQNRVSQMEHGDLGTSRVDTLRKYVEAT 82
Query 91 GGHLRI 96
GG L +
Sbjct 83 GGELEV 88
>gi|17228099|ref|NP_484647.1| hypothetical protein all0603 [Nostoc sp. PCC 7120]
gi|6996281|emb|CAB75424.1| unnamed protein product [Nostoc sp. PCC 7120]
gi|17129949|dbj|BAB72561.1| all0603 [Nostoc sp. PCC 7120]
Length=101
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/70 (42%), Positives = 43/70 (62%), Gaps = 3/70 (4%)
Query 36 VLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLR 95
+L L+E+R++LG Q DVA MGV Q+ +SK+E D ++ TL Y+ +LGG L
Sbjct 29 LLKLTLSELRESLGQT-QGDVAKNMGVVQSALSKIEHQD--DIQISTLSRYIKSLGGSLT 85
Query 96 IVAEFGENTV 105
I+A F + V
Sbjct 86 IIACFPDQEV 95
>gi|302559460|ref|ZP_07311802.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces
griseoflavus Tu4000]
gi|302477078|gb|EFL40171.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces
griseoflavus Tu4000]
Length=110
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/66 (44%), Positives = 43/66 (66%), Gaps = 3/66 (4%)
Query 36 VLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLR 95
V+ H L EIR+ G Q VAA +G+SQARVS++E G++ + E T++AY ALG +
Sbjct 41 VVGHHLREIREEQGLT-QGQVAASVGISQARVSQIERGEIHNLE--TMRAYAEALGARIT 97
Query 96 IVAEFG 101
+ E+G
Sbjct 98 VTIEYG 103
>gi|239906136|ref|YP_002952875.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
gi|239796000|dbj|BAH74989.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
Length=107
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query 53 QADVAALMGVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGE 102
QADVA MGVSQ RV+++ESG + L TL+ Y A GG L+IV E G+
Sbjct 52 QADVAKAMGVSQPRVARIESG--KNVSLETLRRYAKATGGRLKIVIEPGK 99
>gi|333911975|ref|YP_004485707.1| helix-turn-helix domain-containing protein [Delftia sp. Cs1-4]
gi|333742175|gb|AEF87352.1| helix-turn-helix domain protein [Delftia sp. Cs1-4]
Length=103
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/105 (38%), Positives = 60/105 (58%), Gaps = 9/105 (8%)
Query 3 MARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGV 62
MAR + ++RA + + RAA E M ++ +L E+RKA + Q +VA M V
Sbjct 1 MARKFSELRARMSPEAQ---SRAAARAEAM---LVEMQLQELRKA-RNVTQVEVARAMNV 53
Query 63 SQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
QA +SKLE + + + TL+ YV ALGG LR+VA F + +++
Sbjct 54 EQASISKLERREDMY--VSTLREYVRALGGELRLVASFPDADIQV 96
>gi|260775777|ref|ZP_05884673.1| transcriptional regulator XRE family [Vibrio coralliilyticus
ATCC BAA-450]
gi|260608193|gb|EEX34362.1| transcriptional regulator XRE family [Vibrio coralliilyticus
ATCC BAA-450]
Length=104
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (40%), Positives = 47/68 (70%), Gaps = 2/68 (2%)
Query 26 AVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQA 85
A A+ +D +L +LA++R++LG Q+DVA +MG++Q +S +ES L + ++ T++
Sbjct 21 AKAKHRAKDMLLGMQLAQLRESLG-LTQSDVAKIMGLTQPTISSMESNGL-NLKVETVER 78
Query 86 YVAALGGH 93
Y+AA GGH
Sbjct 79 YIAACGGH 86
>gi|340776371|ref|ZP_08696314.1| putative transcriptional regulator [Acetobacter aceti NBRC 14818]
Length=113
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/89 (40%), Positives = 56/89 (63%), Gaps = 8/89 (8%)
Query 20 VDLQRAAVAREEMRDAVLAHRLAEIRKALGHA-RQADVAALMGVSQARVSKLESGDLSHT 78
V +RAA+ + M DA+ LAE+R+A H Q +A L+GV+QA V+K+E +
Sbjct 17 VSRKRAAMKAQAMADAM---DLAELRRA--HVMSQKQIAELLGVNQASVAKMEK--RTDM 69
Query 79 ELGTLQAYVAALGGHLRIVAEFGENTVEL 107
+ TL++Y+ A+GG L+IVA+F + V +
Sbjct 70 YISTLRSYIEAMGGELQIVAKFPGHAVPI 98
Lambda K H
0.320 0.129 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129509500864
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40