BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3189 Length=206 Score E Sequences producing significant alignments: (Bits) Value gi|15610325|ref|NP_217705.1| hypothetical protein Rv3189 [Mycoba... 414 4e-114 gi|289763369|ref|ZP_06522747.1| conserved hypothetical protein [... 411 3e-113 gi|340628161|ref|YP_004746613.1| hypothetical protein MCAN_32001... 342 2e-92 gi|339296019|gb|AEJ48130.1| hypothetical protein CCDC5079_2940 [... 200 1e-49 gi|284044497|ref|YP_003394837.1| RES domain protein [Conexibacte... 52.0 5e-05 gi|167851755|ref|ZP_02477263.1| polymorphic membrane protein, Fi... 50.4 1e-04 gi|167924724|ref|ZP_02511815.1| polymorphic membrane protein, Fi... 50.1 2e-04 gi|126454501|ref|YP_001068101.1| polymorphic membrane protein, f... 49.7 2e-04 gi|330815187|ref|YP_004358892.1| adhesin/hemolysin [Burkholderia... 49.7 2e-04 gi|90421958|ref|YP_530328.1| hypothetical protein RPC_0434 [Rhod... 48.5 6e-04 gi|330812641|ref|YP_004357103.1| hypothetical protein PSEBR_a556... 47.0 0.002 gi|296444470|ref|ZP_06886435.1| RES domain protein [Methylosinus... 45.8 0.004 gi|83592122|ref|YP_425874.1| hypothetical protein Rru_A0783 [Rho... 45.4 0.005 gi|229593393|ref|YP_002875512.1| hypothetical protein PFLU6028 [... 42.4 0.037 gi|260909892|ref|ZP_05916581.1| conserved hypothetical protein [... 40.4 0.14 gi|145588534|ref|YP_001155131.1| hypothetical protein Pnuc_0347 ... 38.9 0.45 gi|167896295|ref|ZP_02483697.1| polymorphic membrane protein, Fi... 38.9 0.46 gi|333815593|gb|AEG08260.1| RES domain protein [Sinorhizobium me... 37.0 1.5 gi|16264455|ref|NP_437247.1| hypothetical protein SM_b21128 [Sin... 37.0 1.5 gi|336037787|gb|AEH83717.1| conserved hypothetical membrane-anch... 37.0 1.6 gi|126437138|ref|YP_001072829.1| hypothetical protein Mjls_4571 ... 37.0 1.9 gi|15609126|ref|NP_216505.1| hypothetical protein Rv1989c [Mycob... 36.6 2.0 gi|289570088|ref|ZP_06450315.1| hypothetical protein TBJG_00455 ... 36.2 2.9 gi|119854993|ref|YP_935598.1| hypothetical protein Mkms_5600 [My... 36.2 3.0 gi|150376676|ref|YP_001313272.1| RES domain-containing protein [... 35.8 3.4 gi|89901584|ref|YP_524055.1| hypothetical protein Rfer_2812 [Rho... 35.8 4.0 gi|325284266|ref|YP_004256806.1| RES domain-containing protein [... 35.0 5.8 gi|118431824|ref|NP_148529.2| hypothetical protein APE_2311.1 [A... 35.0 6.9 gi|126437109|ref|YP_001072800.1| hypothetical protein Mjls_4540 ... 34.7 7.8 >gi|15610325|ref|NP_217705.1| hypothetical protein Rv3189 [Mycobacterium tuberculosis H37Rv] gi|15842767|ref|NP_337804.1| hypothetical protein MT3277 [Mycobacterium tuberculosis CDC1551] gi|31794363|ref|NP_856856.1| hypothetical protein Mb3211 [Mycobacterium bovis AF2122/97] 74 more sequence titles Length=206 Score = 414 bits (1064), Expect = 4e-114, Method: Compositional matrix adjust. Identities = 205/206 (99%), Positives = 206/206 (100%), Gaps = 0/206 (0%) Query 1 VKLADAIATAPRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEPGVWYASNKEQGA 60 +KLADAIATAPRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEPGVWYASNKEQGA Sbjct 1 MKLADAIATAPRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEPGVWYASNKEQGA 60 Query 61 WAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQA 120 WAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQA Sbjct 61 WAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQA 120 Query 121 IAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQPPPRLANLLPLIRPHE 180 IAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQPPPRLANLLPLIRPHE Sbjct 121 IAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQPPPRLANLLPLIRPHE 180 Query 181 HMPDSVRRLLATLTRAGAEAIRRRRR 206 HMPDSVRRLLATLTRAGAEAIRRRRR Sbjct 181 HMPDSVRRLLATLTRAGAEAIRRRRR 206 >gi|289763369|ref|ZP_06522747.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289710875|gb|EFD74891.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=206 Score = 411 bits (1056), Expect = 3e-113, Method: Compositional matrix adjust. Identities = 204/206 (99%), Positives = 205/206 (99%), Gaps = 0/206 (0%) Query 1 VKLADAIATAPRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEPGVWYASNKEQGA 60 +KLADAIATAPRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEP VWYASNKEQGA Sbjct 1 MKLADAIATAPRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEPEVWYASNKEQGA 60 Query 61 WAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQA 120 WAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQA Sbjct 61 WAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQA 120 Query 121 IAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQPPPRLANLLPLIRPHE 180 IAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQPPPRLANLLPLIRPHE Sbjct 121 IAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQPPPRLANLLPLIRPHE 180 Query 181 HMPDSVRRLLATLTRAGAEAIRRRRR 206 HMPDSVRRLLATLTRAGAEAIRRRRR Sbjct 181 HMPDSVRRLLATLTRAGAEAIRRRRR 206 >gi|340628161|ref|YP_004746613.1| hypothetical protein MCAN_32001 [Mycobacterium canettii CIPT 140010059] gi|340006351|emb|CCC45531.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=207 Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 201/207 (98%), Positives = 202/207 (98%), Gaps = 1/207 (0%) Query 1 VKLADAIATAPRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEPGVWYASNKEQGA 60 +KLADAIATAPRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEPGVWYASNKEQGA Sbjct 1 MKLADAIATAPRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEPGVWYASNKEQGA 60 Query 61 WAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDY-TTTQ 119 WAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDY TT Sbjct 61 WAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQA 120 Query 120 AIAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQPPPRLANLLPLIRPH 179 AAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQPPPRLANLLPLIRPH Sbjct 121 IAAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQPPPRLANLLPLIRPH 180 Query 180 EHMPDSVRRLLATLTRAGAEAIRRRRR 206 EHMPDSVRRLLATLTRAGAEAIRRRRR Sbjct 181 EHMPDSVRRLLATLTRAGAEAIRRRRR 207 >gi|339296019|gb|AEJ48130.1| hypothetical protein CCDC5079_2940 [Mycobacterium tuberculosis CCDC5079] gi|339299630|gb|AEJ51740.1| hypothetical protein CCDC5180_2903 [Mycobacterium tuberculosis CCDC5180] Length=102 Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 101/102 (99%), Positives = 102/102 (100%), Gaps = 0/102 (0%) Query 105 VDETDLLSDDYTTTQAIAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQ 164 +DETDLLSDDYTTTQAIAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQ Sbjct 1 MDETDLLSDDYTTTQAIAAARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQ 60 Query 165 PPPRLANLLPLIRPHEHMPDSVRRLLATLTRAGAEAIRRRRR 206 PPPRLANLLPLIRPHEHMPDSVRRLLATLTRAGAEAIRRRRR Sbjct 61 PPPRLANLLPLIRPHEHMPDSVRRLLATLTRAGAEAIRRRRR 102 >gi|284044497|ref|YP_003394837.1| RES domain protein [Conexibacter woesei DSM 14684] gi|283948718|gb|ADB51462.1| RES domain protein [Conexibacter woesei DSM 14684] Length=220 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/116 (33%), Positives = 55/116 (48%), Gaps = 2/116 (1%) Query 35 PARGPGRYHRTGEPGVWYASNKEQGAWAELFR-HFVDDGVDPFEVRRRVGRVAV-TLQVL 92 P++ R+HR GE Y + + GAWAEL R + D + RRR+ V V ++ Sbjct 37 PSQRSARWHRLGEGMAQYLALEPMGAWAELVRFERIRDAERAAQYRRRLWIVFVREREIA 96 Query 93 DLTDERTRSHLGVDETDLLSDDYTTTQAIAAARDANFDAVLAPAAALPGCQTLAVF 148 DL+ G+D D + D Q R A + VL+P+AAL G L +F Sbjct 97 DLSTFDQWEACGLDPRDAVGDHAACQQIADDLRAAGYRGVLSPSAALAGATNLTLF 152 >gi|167851755|ref|ZP_02477263.1| polymorphic membrane protein, Filamentous haemagglutinin/Adhesin [Burkholderia pseudomallei B7210] Length=3064 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 51/161 (32%), Positives = 70/161 (44%), Gaps = 21/161 (13%) Query 43 HRTGEPGVW--YASNKEQGAWAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTR 100 HR PGV YA Q + AE+ + +P + + V + V VLDLT+ R Sbjct 2851 HRYSPPGVGAIYAGTTPQTSLAEITSY------EPLKGQVLVTKNFVINNVLDLTNPAAR 2904 Query 101 SHLGVDETDLLSDD-----YTTTQAIAA-ARDANFDAVLAPAAALPGCQTLAVFVHALPN 154 LGV L Y TQAI+ AR+ + A+LAP+A LPG L F +L N Sbjct 2905 QALGVTVDQLTQTSHGGAAYDATQAISTWAREQGYQAILAPSAQLPGGVNLISF-KSLGN 2963 Query 155 IEPERSEVRQPPPRLANLLPLIRPHEHMPDSVRRLLATLTR 195 S + P + +RP D V + L+ L R Sbjct 2964 -----SNMEDIPEGWGKFVDALRPSWEEND-VTKELSNLVR 2998 >gi|167924724|ref|ZP_02511815.1| polymorphic membrane protein, Filamentous haemagglutinin/Adhesin [Burkholderia pseudomallei BCC215] Length=3066 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 40/114 (36%), Positives = 53/114 (47%), Gaps = 14/114 (12%) Query 43 HRTGEPGVW--YASNKEQGAWAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTR 100 HR PGV YA Q + AE+ + +P + + V + V VLDLT+ R Sbjct 2953 HRYSPPGVGAIYAGTTPQTSLAEITSY------EPLKGQVLVTKNFVINNVLDLTNPAAR 3006 Query 101 SHLGVDETDLLSDD-----YTTTQAIAA-ARDANFDAVLAPAAALPGCQTLAVF 148 LGV L Y TQAI+ AR+ + A+LAP+A LPG L F Sbjct 3007 QALGVTVDQLTQTSHGGAAYDATQAISTWAREQGYQAILAPSAQLPGGVNLISF 3060 >gi|126454501|ref|YP_001068101.1| polymorphic membrane protein, filamentous haemagglutinin/adhesin [Burkholderia pseudomallei 1106a] gi|242314335|ref|ZP_04813351.1| putative adhesin/hemolysin [Burkholderia pseudomallei 1106b] gi|126228143|gb|ABN91683.1| polymorphic membrane protein, Filamentous haemagglutinin/Adhesin [Burkholderia pseudomallei 1106a] gi|242137574|gb|EES23976.1| putative adhesin/hemolysin [Burkholderia pseudomallei 1106b] Length=3159 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 40/114 (36%), Positives = 53/114 (47%), Gaps = 14/114 (12%) Query 43 HRTGEPGVW--YASNKEQGAWAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTR 100 HR PGV YA Q + AE+ + +P + + V + V VLDLT+ R Sbjct 3046 HRYSPPGVGAIYAGTTPQTSLAEITSY------EPLKGQVLVTKNFVINNVLDLTNPAAR 3099 Query 101 SHLGVDETDLLSDD-----YTTTQAIAA-ARDANFDAVLAPAAALPGCQTLAVF 148 LGV L Y TQAI+ AR+ + A+LAP+A LPG L F Sbjct 3100 QALGVTVDQLTQTSHGGAAYDATQAISTWAREQGYQAILAPSAQLPGGVNLISF 3153 >gi|330815187|ref|YP_004358892.1| adhesin/hemolysin [Burkholderia gladioli BSR3] gi|327367580|gb|AEA58936.1| adhesin/hemolysin [Burkholderia gladioli BSR3] Length=3108 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 40/114 (36%), Positives = 53/114 (47%), Gaps = 14/114 (12%) Query 43 HRTGEPGVW--YASNKEQGAWAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTR 100 HR PGV YA Q + AE+ + +P + + V + V VLDLT+ R Sbjct 2995 HRYSPPGVGAIYAGTTPQTSLAEITSY------EPLKGQVLVTKNFVINNVLDLTNPAAR 3048 Query 101 SHLGVDETDLLSDD-----YTTTQAIAA-ARDANFDAVLAPAAALPGCQTLAVF 148 LGV L Y TQAI+ AR+ + A+LAP+A LPG L F Sbjct 3049 QALGVTVDQLTQTSHGGAAYDATQAISTWAREQGYQAILAPSAQLPGGVNLISF 3102 >gi|90421958|ref|YP_530328.1| hypothetical protein RPC_0434 [Rhodopseudomonas palustris BisB18] gi|90103972|gb|ABD86009.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length=189 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/161 (32%), Positives = 69/161 (43%), Gaps = 12/161 (7%) Query 1 VKLADAIATAPRRTLKGTYWHQGPT-RHPVTSCADPARGPGRYHRTGEPGVWYASNKEQG 59 V L DA+ PR G W P R P+ + +R G V Y S QG Sbjct 11 VALLDALDGMPRHHFSGAVWRVTPQGRDPLLAGKSQSRWC-----NGTFDVLYTSLTRQG 65 Query 60 AWAELFRHFVDDGVDPFEVRRRVGRV-AVTLQVLDLTDERTRSHLGVDETDLLSDDYTTT 118 A AE+F + V P ++R + A + Q L L D +LGV + +Y T Sbjct 66 ALAEIFALYSSQPVFPSKIRSVAHTIEASSGQTLRLVDLAALENLGVRTQNYSEREYGRT 125 Query 119 QAIA-AARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPE 158 Q IA AA F +L P+A G + L +F +I+PE Sbjct 126 QEIADAAYFLGFSGLLVPSARWHG-ENLVLFT---DHIDPE 162 >gi|330812641|ref|YP_004357103.1| hypothetical protein PSEBR_a5569 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380749|gb|AEA72099.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length=1479 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/140 (33%), Positives = 59/140 (43%), Gaps = 9/140 (6%) Query 12 RRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEPGVW--YASNKEQGAWAELFRHFV 69 R+ + Y + P R T A R HR PG+ Y +N + A E+ H+ Sbjct 1343 RKVNRTVYRFEEPGRISTTWTAHKWNVASR-HRYTAPGLGGVYGANSRKTAMGEV-NHW- 1399 Query 70 DDGVDPFEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQAIAAARDAN- 128 GVD R V + VLDLT R LGV + D YT T I A AN Sbjct 1400 --GVD-LSTRVLVSKKVQLNNVLDLTRADVRKQLGVSLKSITGDKYTQTHQIGAWAKANG 1456 Query 129 FDAVLAPAAALPGCQTLAVF 148 +D +LAP+A P L F Sbjct 1457 YDGILAPSARNPTGSNLISF 1476 >gi|296444470|ref|ZP_06886435.1| RES domain protein [Methylosinus trichosporium OB3b] gi|296258117|gb|EFH05179.1| RES domain protein [Methylosinus trichosporium OB3b] Length=188 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/162 (33%), Positives = 70/162 (44%), Gaps = 23/162 (14%) Query 1 VKLADAIATAPRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHR--TGEPGVWYASNKEQ 58 +++ DA+ PR G W PT DPA G R G V Y S + Sbjct 11 LQILDAVDALPREPFDGRVWRVAPTGR------DPALGGPSLSRWCNGAFDVLYTSLERD 64 Query 59 GAWAELFRHFVDDGVDP-------FEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLL 111 GA AE+ V P FE+ R + TL++ DL+ +T LGV+ D Sbjct 65 GAVAEVHALLSLQPVFPSKPVWLCFELAVRATK---TLRIADLSALQT---LGVEIADYR 118 Query 112 SDDYTTTQAIA-AARDANFDAVLAPAAALPGCQTLAVFVHAL 152 Y TQ IA AA FD ++AP+A P C +L +F L Sbjct 119 RRSYEQTQDIADAAFFLGFDGLMAPSARRP-CASLVLFTSRL 159 >gi|83592122|ref|YP_425874.1| hypothetical protein Rru_A0783 [Rhodospirillum rubrum ATCC 11170] gi|83575036|gb|ABC21587.1| hypothetical protein Rru_A0783 [Rhodospirillum rubrum ATCC 11170] Length=185 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/171 (30%), Positives = 76/171 (45%), Gaps = 14/171 (8%) Query 1 VKLADAIATAPRRTLKGTYWHQG-PTRHPVTSCADPAR-GPGRYHRTGEPGVWYASNKEQ 58 + L DA+ +G W R + + AR PG + V Y S + + Sbjct 9 IDLLDAVGAHIGVAFEGEVWRIARAGRSVLEGASSKARWDPGTFD------VLYTSLERE 62 Query 59 GAWAELFRHFVDDGVDPFEVRRRVGRVAV-TLQVLDLTDERTRSHLGVDETDLLSDDYTT 117 GA AE+ H V P ++ + R++V T + L+L D + LG+ + Y Sbjct 63 GALAEVHFHLSRQPVFPSKLHSVLHRLSVKTRRTLNLADLSMVATLGIPPEHYGALRYER 122 Query 118 TQAIA-AARDANFDAVLAPAAALPGCQTLAVFVHALPNIEPERSEVRQPPP 167 +Q IA AA FDA+LAP+A GCQ L +F + + PE V + P Sbjct 123 SQDIADAAFFLGFDAILAPSARW-GCQNLILF---MDRVAPEALAVLESEP 169 >gi|229593393|ref|YP_002875512.1| hypothetical protein PFLU6028 [Pseudomonas fluorescens SBW25] gi|229365259|emb|CAY53579.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length=1476 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 36/109 (34%), Positives = 44/109 (41%), Gaps = 7/109 (6%) Query 41 RYHRTGEPGVWYASNKEQGAWAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTR 100 RY G GV Y +N + A E+ VD R V + VLDLT R Sbjct 1371 RYTTKGVGGV-YGANSRKTALGEVTHWKVD-----LSKRVLVSKKVQLNNVLDLTRADVR 1424 Query 101 SHLGVDETDLLSDDYTTTQAIAAARDAN-FDAVLAPAAALPGCQTLAVF 148 LGV + YT T I AN +D +LAP+A P L F Sbjct 1425 KQLGVSLKSITGSKYTETHQIGNWAKANGYDGILAPSARNPTGSNLISF 1473 >gi|260909892|ref|ZP_05916581.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635996|gb|EEX53997.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length=227 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/109 (32%), Positives = 48/109 (45%), Gaps = 7/109 (6%) Query 41 RYHRTGEPGVWYASNKEQGAWAELFRHFVDDGVDPFEVRRRVGRVAVTLQVLDLTDERTR 100 RY + G G++ A++ E FR + GVD R V R LDLT+ TR Sbjct 122 RYTKPGVGGIYAATSVETA-----FREVMHYGVD-MNRRVLVTRHYELHNALDLTNPETR 175 Query 101 SHLGVDETDLLSDDYTTTQAIA-AARDANFDAVLAPAAALPGCQTLAVF 148 LGV D+ D Y T + A +D ++ P+A G + VF Sbjct 176 KLLGVTLEDITGDCYELTHKLGDFALQNGYDGLVVPSARNVGGVNIVVF 224 >gi|145588534|ref|YP_001155131.1| hypothetical protein Pnuc_0347 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046940|gb|ABP33567.1| conserved hypothetical protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length=202 Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust. Identities = 32/108 (30%), Positives = 45/108 (42%), Gaps = 4/108 (3%) Query 34 DPARGPGRYHRTGEPGVWYASNKEQGAWAELFR---HFVDDGVDPFEVRRRVGRVAVTLQ 90 +P RG R+ +PG++Y + Q A AEL F+ D ++ + V Sbjct 42 NPKRGGSRFRSEIDPGIFYGAQSIQAAGAELGYWRWKFLQDAIELNNLSPVAHTVFSCKP 101 Query 91 VLDLTDERTRSHLGVDETDLLSDDYTTTQAIA-AARDANFDAVLAPAA 137 D R LG E S DY TQ A AR AN A++ +A Sbjct 102 TCLAVDLRQNPFLGHQEAWCNSTDYLATQEFARIARKANMQAIVYQSA 149 >gi|167896295|ref|ZP_02483697.1| polymorphic membrane protein, Filamentous haemagglutinin/Adhesin [Burkholderia pseudomallei 7894] Length=3076 Score = 38.9 bits (89), Expect = 0.46, Method: Composition-based stats. Identities = 30/79 (38%), Positives = 37/79 (47%), Gaps = 6/79 (7%) Query 76 FEVRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDD-----YTTTQAIAA-ARDANF 129 E R V + V VLDLT+ R LGV L S YT QAI+ AR+ + Sbjct 2990 LEGRVLVSKNVVINNVLDLTNPAARQALGVTVDQLTSASHGGGAYTAPQAISVWAREQGY 3049 Query 130 DAVLAPAAALPGCQTLAVF 148 A+LAP+A G L F Sbjct 3050 QAILAPSAQNAGGVNLISF 3068 >gi|333815593|gb|AEG08260.1| RES domain protein [Sinorhizobium meliloti BL225C] Length=184 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/133 (31%), Positives = 56/133 (43%), Gaps = 20/133 (15%) Query 27 HPVTSCADPARGPGRYHRTGEPGVWYASNKEQGAWAELFRHFVDDGVDPFEVRRRVGRVA 86 H S A AR GR++ G P + YA+ + AWAE + FV ++ R R+A Sbjct 34 HMPLSGAGAARFGGRWNPIGMPAI-YAARELSTAWAEYNQGFVQHPALIVQLELRGARLA 92 Query 87 VTLQVLDLTDERTRSHLGVDET-------DLLSDDYTT----TQAIAAARDANFDAVLAP 135 DLTD LGVDE D L Q+ ARD + V+ P Sbjct 93 ------DLTDASVLLELGVDEAIHRCEWRDALDKGAVPETHRLQSELLARD--YHGVIYP 144 Query 136 AAALPGCQTLAVF 148 + PG +A++ Sbjct 145 SFMSPGGTCVALW 157 >gi|16264455|ref|NP_437247.1| hypothetical protein SM_b21128 [Sinorhizobium meliloti 1021] gi|15140592|emb|CAC49107.1| conserved hypothetical membrane-anchored protein [Sinorhizobium meliloti 1021] Length=184 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/133 (31%), Positives = 57/133 (43%), Gaps = 20/133 (15%) Query 27 HPVTSCADPARGPGRYHRTGEPGVWYASNKEQGAWAELFRHFVDDGVDPFEVRRRVGRVA 86 H S A AR GR++ G P + YA+ + AWAE + FV ++ R R+A Sbjct 34 HMPLSGAGAARFGGRWNPIGMPAI-YAARELSTAWAEYNQGFVQHPALIVQLELRGARLA 92 Query 87 VTLQVLDLTDERTRSHLGVDET-------DLLSD----DYTTTQAIAAARDANFDAVLAP 135 DLTD LGVDE D L + Q+ ARD + V+ P Sbjct 93 ------DLTDASVLLELGVDEAIHRCEWRDALDKGAVPETHRLQSELLARD--YHGVIYP 144 Query 136 AAALPGCQTLAVF 148 + PG +A++ Sbjct 145 SFMSPGGTCVALW 157 >gi|336037787|gb|AEH83717.1| conserved hypothetical membrane-anchored protein [Sinorhizobium meliloti SM11] Length=184 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/133 (31%), Positives = 57/133 (43%), Gaps = 20/133 (15%) Query 27 HPVTSCADPARGPGRYHRTGEPGVWYASNKEQGAWAELFRHFVDDGVDPFEVRRRVGRVA 86 H S A AR GR++ G P + YA+ + AWAE + FV ++ R R+A Sbjct 34 HMPLSGAGAARFGGRWNPIGMPAI-YAARELSTAWAEYNQGFVQHPALIVQLELRGARLA 92 Query 87 VTLQVLDLTDERTRSHLGVDET-------DLLSD----DYTTTQAIAAARDANFDAVLAP 135 DLTD LGVDE D L + Q+ ARD + V+ P Sbjct 93 ------DLTDASVLLELGVDEAIHRCEWRDALDKGAVPETHRLQSELLARD--YHGVIYP 144 Query 136 AAALPGCQTLAVF 148 + PG +A++ Sbjct 145 SFMSPGGTCVALW 157 >gi|126437138|ref|YP_001072829.1| hypothetical protein Mjls_4571 [Mycobacterium sp. JLS] gi|126236938|gb|ABO00339.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=187 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 36/118 (31%), Positives = 52/118 (45%), Gaps = 11/118 (9%) Query 35 PARGPGRYHRT--GEP-GVW---YASNKEQGAWAELFRHFVDDGVDP---FEVRRRVGRV 85 P RG GR G P G++ Y ++ Q E+ R P E R+ + Sbjct 33 PCRGKGRADSAEGGNPAGLFSAIYLADSTQACMVEVERAAQAASTTPEKMLEASYRLHTI 92 Query 86 AVT-LQVLDLTDERTRSHLGVDETDLLSDDYTTTQAIA-AARDANFDAVLAPAAALPG 141 T L VLDL R +G+++ D+ DD++ QA+ AA + VL PAA G Sbjct 93 EATDLAVLDLITSDAREAVGLEDDDIYGDDWSACQAVGHAAWFLHVQGVLVPAAGGIG 150 >gi|15609126|ref|NP_216505.1| hypothetical protein Rv1989c [Mycobacterium tuberculosis H37Rv] gi|15841468|ref|NP_336505.1| hypothetical protein MT2043 [Mycobacterium tuberculosis CDC1551] gi|31793168|ref|NP_855661.1| hypothetical protein Mb2011c [Mycobacterium bovis AF2122/97] 78 more sequence titles Length=186 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/68 (37%), Positives = 36/68 (53%), Gaps = 2/68 (2%) Query 76 FEVRRRVGRVAVT-LQVLDLTDERTRSHLGVDETDLLSDDYTTTQAIA-AARDANFDAVL 133 E R+ + VT L VLDLT + R +G++ D+ DD++ QA+ AA + VL Sbjct 85 LEAAYRLHTIDVTDLAVLDLTTPQAREAVGLENDDIYGDDWSGCQAVGHAAWFLHMQGVL 144 Query 134 APAAALPG 141 PAA G Sbjct 145 VPAAGGVG 152 >gi|289570088|ref|ZP_06450315.1| hypothetical protein TBJG_00455 [Mycobacterium tuberculosis T17] gi|289543842|gb|EFD47490.1| hypothetical protein TBJG_00455 [Mycobacterium tuberculosis T17] Length=186 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/68 (37%), Positives = 35/68 (52%), Gaps = 2/68 (2%) Query 76 FEVRRRVGRVAVT-LQVLDLTDERTRSHLGVDETDLLSDDYTTTQAIA-AARDANFDAVL 133 E R+ + VT L VLDLT + R +G + D+ DD++ QA+ AA + VL Sbjct 85 LEAAYRLHTIDVTDLAVLDLTTPQAREAVGFENDDIYGDDWSGCQAVGHAAWFLHMQGVL 144 Query 134 APAAALPG 141 PAA G Sbjct 145 VPAAGGVG 152 >gi|119854993|ref|YP_935598.1| hypothetical protein Mkms_5600 [Mycobacterium sp. KMS] gi|145226005|ref|YP_001136659.1| hypothetical protein Mflv_5410 [Mycobacterium gilvum PYR-GCK] gi|119697711|gb|ABL94783.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|145218468|gb|ABP47871.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=186 Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/57 (39%), Positives = 31/57 (55%), Gaps = 1/57 (1%) Query 86 AVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQAIA-AARDANFDAVLAPAAALPG 141 A L VLDLT R +G+++ D+ DD++ QA+ AA + VL PAA G Sbjct 96 ATDLSVLDLTTPEAREAVGLEDDDIHGDDWSACQAVGHAAWFLHVQGVLVPAAGGVG 152 >gi|150376676|ref|YP_001313272.1| RES domain-containing protein [Sinorhizobium medicae WSM419] gi|150031223|gb|ABR63339.1| RES domain protein [Sinorhizobium medicae WSM419] Length=166 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 38/131 (30%), Positives = 57/131 (44%), Gaps = 16/131 (12%) Query 27 HPVTSCADPARGPGRYHRTGEPGVWYASNKEQGAWAELFRHFVDDGVDPFEVRRRVGRVA 86 H S A AR GR++ G P + YA+ + AWAE + FV ++ R +A Sbjct 16 HMPLSGAGAARFGGRWNPVGVPAL-YAARELSTAWAEYNQGFVQHPALIVQLELRDAVLA 74 Query 87 VTLQVLDLTDERTRSHLGVDET-------DLLSDDYT--TTQAIAAARDANFDAVLAPAA 137 DLTD + + L VDET D+L T Q A ++ V+ P+ Sbjct 75 ------DLTDFKVLADLDVDETIHSCEWRDMLDKGAVPQTHQLRTALLARDYHGVIYPSF 128 Query 138 ALPGCQTLAVF 148 PG +A++ Sbjct 129 MSPGGTCVALW 139 >gi|89901584|ref|YP_524055.1| hypothetical protein Rfer_2812 [Rhodoferax ferrireducens T118] gi|89346321|gb|ABD70524.1| conserved hypothetical protein [Rhodoferax ferrireducens T118] Length=237 Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust. Identities = 43/130 (34%), Positives = 57/130 (44%), Gaps = 18/130 (13%) Query 11 PRRTLKGTYWHQGPTRHPVTSCADPARGPGRYHRTGEPGVWYASNKEQGAWAEL--FRH- 67 P LK Y P R+ P RG R+ +PGV+Y + + A AEL +R Sbjct 59 PAGALKLDYLLATPFRY------SPLRGGSRFRAITDPGVFYGAESVRTASAELGYWRWR 112 Query 68 FVDDGVDPFE---VRRRVGRVAVTLQVLDLTDERTRSHLGVDETDLLS-DDYTTTQAIA- 122 F+ D VD + V R V QV+DL ++ +D L DYT TQ IA Sbjct 113 FLKDAVDLEKLEPVAHTAFRADVKTQVVDL----RQAPFSLDAPHWLHPTDYTATQTIAQ 168 Query 123 AARDANFDAV 132 AR AN + Sbjct 169 VARKANLGGI 178 >gi|325284266|ref|YP_004256806.1| RES domain-containing protein [Deinococcus proteolyticus MRP] gi|324316330|gb|ADY27443.1| RES domain protein [Deinococcus proteolyticus MRP] Length=230 Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust. Identities = 42/154 (28%), Positives = 62/154 (41%), Gaps = 32/154 (20%) Query 29 VTSCADPARGPGRYHRTGEPGVWYASNKEQGAWAELFRH---------FVDDGVDPFEVR 79 +TS R RY G V+YA++ A E R F + P EVR Sbjct 35 LTSAIGGLRADNRYTAKGLAEVYYAASAPDLAMLEATRQHQREFTTPAFPSHAIMPLEVR 94 Query 80 RRVGRVAVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQAI----------AAARDANF 129 +VLDLTD+ S LG + L+ D+ TTQ + A A D F Sbjct 95 LN--------RVLDLTDDSHYSALGTSFME-LTGDWRTTQQLGQRVITQELGAIAYDLGF 145 Query 130 DAVLAPAAALPGCQTLAVFVHALPNIEPERSEVR 163 A+ P+A A+F P++ + +++R Sbjct 146 VAIRYPSAYRGNEWNAALF----PDLMDDDNQIR 175 >gi|118431824|ref|NP_148529.2| hypothetical protein APE_2311.1 [Aeropyrum pernix K1] gi|116063146|dbj|BAA81323.2| hypothetical protein APE_2311.1 [Aeropyrum pernix K1] Length=299 Score = 35.0 bits (79), Expect = 6.9, Method: Compositional matrix adjust. Identities = 21/65 (33%), Positives = 29/65 (45%), Gaps = 8/65 (12%) Query 6 AIATAPRRTLKGTYWHQGPTRHP-----VTSCADPARGPGRYHRTGEPGVW---YASNKE 57 + APR ++ WH GP P C PA+G R HR E ++ + S E Sbjct 63 GLEIAPRPWVEMCRWHSGPLDRPDDPLSRIYCTSPAQGFCRQHRRSERALYDECFGSQGE 122 Query 58 QGAWA 62 +G WA Sbjct 123 RGLWA 127 >gi|126437109|ref|YP_001072800.1| hypothetical protein Mjls_4540 [Mycobacterium sp. JLS] gi|126236909|gb|ABO00310.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=189 Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust. Identities = 21/57 (37%), Positives = 30/57 (53%), Gaps = 1/57 (1%) Query 86 AVTLQVLDLTDERTRSHLGVDETDLLSDDYTTTQAIA-AARDANFDAVLAPAAALPG 141 A L VLDL R +G+++ D+ DD++ QA+ AA + VL PAA G Sbjct 96 ATDLAVLDLITSDAREAVGLEDDDIYGDDWSACQAVGHAAWFLHVQGVLVPAAGGIG 152 Lambda K H 0.321 0.135 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 233186096862 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40