BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           21,062,489 sequences; 7,218,481,314 total letters



Query= Rv3190A Rv3190A Conserved protein 3556855:3557064 forward MW:7632

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842769|ref|NP_337806.1|  hypothetical protein MT3279 [Mycoba...   141    4e-32
gi|323718049|gb|EGB27231.1|  hypothetical protein TMMG_02328 [Myc...   129    1e-28
gi|392416071|ref|YP_006452676.1|  hypothetical protein Mycch_2214...  62.0    4e-08
gi|226349334|ref|YP_002776448.1|  hypothetical protein ROP_pROB01...  43.1    0.017
gi|384105189|ref|ZP_10006114.1|  hypothetical protein W59_27636 [...  43.1    0.018


>gi|15842769|ref|NP_337806.1| hypothetical protein MT3279 [Mycobacterium tuberculosis CDC1551]
 gi|148663045|ref|YP_001284568.1| hypothetical protein MRA_3223 [Mycobacterium tuberculosis H37Ra]
 gi|167966986|ref|ZP_02549263.1| hypothetical protein MtubH3_02583 [Mycobacterium tuberculosis 
H37Ra]
 14 more sequence titles
 
gi|254552280|ref|ZP_05142727.1| hypothetical protein Mtube_17818 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|294993877|ref|ZP_06799568.1| hypothetical protein Mtub2_05016 [Mycobacterium tuberculosis 
210]
 gi|297635831|ref|ZP_06953611.1| hypothetical protein MtubK4_16987 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732828|ref|ZP_06961946.1| hypothetical protein MtubKR_17142 [Mycobacterium tuberculosis 
KZN R506]
 gi|313660161|ref|ZP_07817041.1| hypothetical protein MtubKV_17147 [Mycobacterium tuberculosis 
KZN V2475]
 gi|383308927|ref|YP_005361738.1| hypothetical protein MRGA327_19605 [Mycobacterium tuberculosis 
RGTB327]
 gi|386006028|ref|YP_005924307.1| hypothetical protein MRGA423_19910 [Mycobacterium tuberculosis 
RGTB423]
 gi|397675120|ref|YP_006516655.1| hypothetical protein RVBD_3190A [Mycobacterium tuberculosis H37Rv]
 gi|13883093|gb|AAK47620.1| hypothetical protein MT3279 [Mycobacterium tuberculosis CDC1551]
 gi|148507197|gb|ABQ75006.1| hypothetical protein MRA_3223 [Mycobacterium tuberculosis H37Ra]
 gi|358233334|dbj|GAA46826.1| hypothetical protein NCGM2209_3470 [Mycobacterium tuberculosis 
NCGM2209]
 gi|380722880|gb|AFE17989.1| hypothetical protein MRGA327_19605 [Mycobacterium tuberculosis 
RGTB327]
 gi|380726516|gb|AFE14311.1| hypothetical protein MRGA423_19910 [Mycobacterium tuberculosis 
RGTB423]
 gi|395140025|gb|AFN51184.1| hypothetical protein RVBD_3190A [Mycobacterium tuberculosis H37Rv]
Length=69

 Score =  141 bits (356),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%), Gaps = 0/69 (0%)

Query  1   MITVLDMNGFKDARPDRLPLSASVWDIAQRYNKGGPTVTEALYEALKELEAQVIALQRSE  60
           MITVLDMNGFKDARPDRLPLSASVWDIAQRYNKGGPTVTEALYEALKELEAQVIALQRSE
Sbjct  1   MITVLDMNGFKDARPDRLPLSASVWDIAQRYNKGGPTVTEALYEALKELEAQVIALQRSE  60

Query  61  GKGLLSRLS  69
           GKGLLSRLS
Sbjct  61  GKGLLSRLS  69


>gi|323718049|gb|EGB27231.1| hypothetical protein TMMG_02328 [Mycobacterium tuberculosis CDC1551A]
 gi|379029535|dbj|BAL67268.1| hypothetical protein ERDMAN_3493 [Mycobacterium tuberculosis 
str. Erdman = ATCC 35801]
Length=63

 Score =  129 bits (325),  Expect = 1e-28, Method: Compositional matrix adjust.
 Identities = 63/63 (100%), Positives = 63/63 (100%), Gaps = 0/63 (0%)

Query  7   MNGFKDARPDRLPLSASVWDIAQRYNKGGPTVTEALYEALKELEAQVIALQRSEGKGLLS  66
           MNGFKDARPDRLPLSASVWDIAQRYNKGGPTVTEALYEALKELEAQVIALQRSEGKGLLS
Sbjct  1   MNGFKDARPDRLPLSASVWDIAQRYNKGGPTVTEALYEALKELEAQVIALQRSEGKGLLS  60

Query  67  RLS  69
           RLS
Sbjct  61  RLS  63


>gi|392416071|ref|YP_006452676.1| hypothetical protein Mycch_2214 [Mycobacterium chubuense NBB4]
 gi|390615847|gb|AFM16997.1| hypothetical protein Mycch_2214 [Mycobacterium chubuense NBB4]
Length=61

 Score = 62.0 bits (149),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 0/50 (0%)

Query  8   NGFKDARPDRLPLSASVWDIAQRYNKGGPTVTEALYEALKELEAQVIALQ  57
           NG+++ RPD LPLSA+VWD +  + +   TV + LY+A+K+LEA VIA++
Sbjct  10  NGYQEPRPDHLPLSAAVWDASHNFGRSSQTVVQKLYDAVKQLEADVIAMR  59


>gi|226349334|ref|YP_002776448.1| hypothetical protein ROP_pROB01-00970 [Rhodococcus opacus B4]
 gi|226245249|dbj|BAH55596.1| hypothetical protein [Rhodococcus opacus B4]
Length=82

 Score = 43.1 bits (100),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 22/57 (39%), Positives = 33/57 (58%), Gaps = 1/57 (1%)

Query  5   LDMNGFKDARPDRLPLSASVWDIAQRYNKGGPTVTEALYEALKELEAQVIALQRSEG  61
              +GFK  RP     SA +W  A+ + K    V+EA + A+  LEA+V+AL+R+ G
Sbjct  24  FSSHGFKIPRPSG-EHSARIWQAAETFGKDSNAVSEATFHAVVALEAEVVALRRATG  79


>gi|384105189|ref|ZP_10006114.1| hypothetical protein W59_27636 [Rhodococcus imtechensis RKJ300]
 gi|383836003|gb|EID75417.1| hypothetical protein W59_27636 [Rhodococcus imtechensis RKJ300]
Length=72

 Score = 43.1 bits (100),  Expect = 0.018, Method: Compositional matrix adjust.
 Identities = 22/57 (39%), Positives = 33/57 (58%), Gaps = 1/57 (1%)

Query  5   LDMNGFKDARPDRLPLSASVWDIAQRYNKGGPTVTEALYEALKELEAQVIALQRSEG  61
              +GFK  RP     SA +W  A+ + K    V+EA + A+  LEA+V+AL+R+ G
Sbjct  14  FSSHGFKIPRPSG-EHSARIWQAAETFGKDSNAVSEATFHAVVALEAEVVALRRATG  69



Lambda     K      H
   0.316    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 177937739420




  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Oct 14, 2012  4:13 PM
  Number of letters in database: 7,218,481,314
  Number of sequences in database:  21,062,489



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40