BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3196 Length=299 Score E Sequences producing significant alignments: (Bits) Value gi|15610332|ref|NP_217712.1| hypothetical protein Rv3196 [Mycoba... 582 2e-164 gi|289448876|ref|ZP_06438620.1| conserved hypothetical protein [... 580 7e-164 gi|326902580|gb|EGE49513.1| hypothetical protein TBPG_00428 [Myc... 580 1e-163 gi|308232370|ref|ZP_07415852.2| hypothetical protein TMAG_02642 ... 538 6e-151 gi|240169966|ref|ZP_04748625.1| hypothetical protein MkanA1_1168... 404 1e-110 gi|118463035|ref|YP_883288.1| hypothetical protein MAV_4140 [Myc... 392 4e-107 gi|254776577|ref|ZP_05218093.1| hypothetical protein MaviaA2_181... 392 4e-107 gi|183981391|ref|YP_001849682.1| hypothetical protein MMAR_1368 ... 387 1e-105 gi|118617990|ref|YP_906322.1| hypothetical protein MUL_2508 [Myc... 386 2e-105 gi|254821698|ref|ZP_05226699.1| hypothetical protein MintA_17312... 380 2e-103 gi|41409392|ref|NP_962228.1| hypothetical protein MAP3294 [Mycob... 378 8e-103 gi|333991549|ref|YP_004524163.1| hypothetical protein JDM601_290... 372 4e-101 gi|336459539|gb|EGO38476.1| hypothetical protein MAPs_02670 [Myc... 366 3e-99 gi|342861149|ref|ZP_08717798.1| hypothetical protein MCOL_19797 ... 361 8e-98 gi|126434067|ref|YP_001069758.1| hypothetical protein Mjls_1466 ... 301 6e-80 gi|108798383|ref|YP_638580.1| hypothetical protein Mmcs_1412 [My... 300 3e-79 gi|120402810|ref|YP_952639.1| hypothetical protein Mvan_1811 [My... 298 6e-79 gi|315445531|ref|YP_004078410.1| hypothetical protein Mspyr1_398... 278 9e-73 gi|145225235|ref|YP_001135913.1| hypothetical protein Mflv_4657 ... 277 1e-72 gi|118472615|ref|YP_886322.1| hypothetical protein MSMEG_1955 [M... 266 3e-69 gi|296169039|ref|ZP_06850701.1| conserved hypothetical protein [... 244 9e-63 gi|169630583|ref|YP_001704232.1| hypothetical protein MAB_3502 [... 222 7e-56 gi|325675764|ref|ZP_08155448.1| hypothetical protein HMPREF0724_... 191 1e-46 gi|312140609|ref|YP_004007945.1| hypothetical protein REQ_32670 ... 190 2e-46 gi|226365855|ref|YP_002783638.1| hypothetical protein ROP_64460 ... 189 7e-46 gi|111023348|ref|YP_706320.1| hypothetical protein RHA1_ro06385 ... 186 5e-45 gi|262203369|ref|YP_003274577.1| hypothetical protein Gbro_3491 ... 177 1e-42 gi|343928364|ref|ZP_08767814.1| hypothetical protein GOALK_115_0... 173 2e-41 gi|226305714|ref|YP_002765674.1| hypothetical protein RER_22270 ... 168 8e-40 gi|229491018|ref|ZP_04384851.1| conserved hypothetical protein [... 159 5e-37 gi|54026503|ref|YP_120745.1| hypothetical protein nfa45300 [Noca... 145 6e-33 gi|326383317|ref|ZP_08205005.1| hypothetical protein SCNU_10284 ... 141 1e-31 gi|333921397|ref|YP_004494978.1| hypothetical protein AS9A_3740 ... 132 5e-29 gi|257054821|ref|YP_003132653.1| molybdopterin/thiamine biosynth... 120 3e-25 gi|300783167|ref|YP_003763458.1| hypothetical protein AMED_1241 ... 118 1e-24 gi|302524550|ref|ZP_07276892.1| predicted protein [Streptomyces ... 115 1e-23 gi|296140730|ref|YP_003647973.1| hypothetical protein Tpau_3041 ... 112 7e-23 gi|296394541|ref|YP_003659425.1| hypothetical protein Srot_2141 ... 102 5e-20 gi|317508130|ref|ZP_07965813.1| hypothetical protein HMPREF9336_... 102 8e-20 gi|296169040|ref|ZP_06850702.1| conserved hypothetical protein [... 98.2 1e-18 gi|331694984|ref|YP_004331223.1| hypothetical protein Psed_1119 ... 95.1 1e-17 gi|256375080|ref|YP_003098740.1| UBA/THIF-type NAD/FAD binding p... 94.4 2e-17 gi|88856792|ref|ZP_01131446.1| hypothetical protein A20C1_13296 ... 91.7 1e-16 gi|284992606|ref|YP_003411160.1| UBA/ThiF-type NAD/FAD binding p... 91.3 2e-16 gi|296270919|ref|YP_003653551.1| UBA/THIF-type NAD/FAD binding p... 81.3 2e-13 gi|258651821|ref|YP_003200977.1| hypothetical protein Namu_1593 ... 80.9 2e-13 gi|229821373|ref|YP_002882899.1| hypothetical protein Bcav_2892 ... 80.5 3e-13 gi|170782256|ref|YP_001710589.1| hypothetical protein CMS_1890 [... 80.5 3e-13 gi|152965151|ref|YP_001360935.1| hypothetical protein Krad_1183 ... 78.6 1e-12 gi|288922530|ref|ZP_06416712.1| UBA/THIF-type NAD/FAD binding pr... 78.6 1e-12 >gi|15610332|ref|NP_217712.1| hypothetical protein Rv3196 [Mycobacterium tuberculosis H37Rv] gi|15842778|ref|NP_337815.1| hypothetical protein MT3288 [Mycobacterium tuberculosis CDC1551] gi|31794370|ref|NP_856863.1| hypothetical protein Mb3218 [Mycobacterium bovis AF2122/97] 60 more sequence titles Length=299 Score = 582 bits (1501), Expect = 2e-164, Method: Compositional matrix adjust. Identities = 298/299 (99%), Positives = 299/299 (100%), Gaps = 0/299 (0%) Query 1 VSARSVAPSQVMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLA 60 +SARSVAPSQVMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLA Sbjct 1 MSARSVAPSQVMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLA 60 Query 61 ALLRSMRSPIPITELQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAAS 120 ALLRSMRSPIPITELQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAAS Sbjct 61 ALLRSMRSPIPITELQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAAS 120 Query 121 IRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHT 180 IRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHT Sbjct 121 IRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHT 180 Query 181 ERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRA 240 ERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRA Sbjct 181 ERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRA 240 Query 241 TLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 TLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC Sbjct 241 TLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 >gi|289448876|ref|ZP_06438620.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289421834|gb|EFD19035.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=299 Score = 580 bits (1496), Expect = 7e-164, Method: Compositional matrix adjust. Identities = 297/299 (99%), Positives = 298/299 (99%), Gaps = 0/299 (0%) Query 1 VSARSVAPSQVMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLA 60 +SARSVAPSQVMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLA Sbjct 1 MSARSVAPSQVMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLA 60 Query 61 ALLRSMRSPIPITELQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAAS 120 ALLRSMRSPIPITELQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRA S Sbjct 61 ALLRSMRSPIPITELQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAGS 120 Query 121 IRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHT 180 IRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHT Sbjct 121 IRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHT 180 Query 181 ERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRA 240 ERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRA Sbjct 181 ERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRA 240 Query 241 TLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 TLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC Sbjct 241 TLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 >gi|326902580|gb|EGE49513.1| hypothetical protein TBPG_00428 [Mycobacterium tuberculosis W-148] Length=299 Score = 580 bits (1494), Expect = 1e-163, Method: Compositional matrix adjust. Identities = 297/299 (99%), Positives = 298/299 (99%), Gaps = 0/299 (0%) Query 1 VSARSVAPSQVMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLA 60 +SARSVAPSQVMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLA Sbjct 1 MSARSVAPSQVMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLA 60 Query 61 ALLRSMRSPIPITELQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAAS 120 ALLRSMRSPIPITELQRQAAERGLVDGDAMANLVAQLVGAGVATPL NPGNLDSRRRAAS Sbjct 61 ALLRSMRSPIPITELQRQAAERGLVDGDAMANLVAQLVGAGVATPLDNPGNLDSRRRAAS 120 Query 121 IRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHT 180 IRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHT Sbjct 121 IRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHT 180 Query 181 ERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRA 240 ERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRA Sbjct 181 ERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRA 240 Query 241 TLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 TLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC Sbjct 241 TLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 >gi|308232370|ref|ZP_07415852.2| hypothetical protein TMAG_02642 [Mycobacterium tuberculosis SUMu001] gi|308370183|ref|ZP_07420575.2| hypothetical protein TMBG_01885 [Mycobacterium tuberculosis SUMu002] gi|308371266|ref|ZP_07424382.2| hypothetical protein TMCG_01611 [Mycobacterium tuberculosis SUMu003] 14 more sequence titles Length=274 Score = 538 bits (1385), Expect = 6e-151, Method: Compositional matrix adjust. Identities = 274/274 (100%), Positives = 274/274 (100%), Gaps = 0/274 (0%) Query 26 MPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAERGLV 85 MPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAERGLV Sbjct 1 MPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAERGLV 60 Query 86 DGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCSGARIR 145 DGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCSGARIR Sbjct 61 DGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCSGARIR 120 Query 146 HSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGV 205 HSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGV Sbjct 121 HSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGV 180 Query 206 TSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEA 265 TSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEA Sbjct 181 TSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEA 240 Query 266 TPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 TPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC Sbjct 241 TPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 274 >gi|240169966|ref|ZP_04748625.1| hypothetical protein MkanA1_11684 [Mycobacterium kansasii ATCC 12478] Length=290 Score = 404 bits (1037), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 223/289 (78%), Positives = 244/289 (85%), Gaps = 4/289 (1%) Query 11 VMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPI 70 VM RA LYSL+PAMPVLLRPDGAVQVGWDPRRAVLV PP GL+A+ +AALLRSMRSP Sbjct 6 VMPRAIPPLYSLDPAMPVLLRPDGAVQVGWDPRRAVLVHPPGGLSASSVAALLRSMRSPT 65 Query 71 PITELQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLS 130 PITELQRQA +GLVDG+ + NLV QLVGAGVA G+ R ASIR+HGRGPLS Sbjct 66 PITELQRQAVSQGLVDGEEVVNLVRQLVGAGVAIR----GHRGCPGRTASIRIHGRGPLS 121 Query 131 DLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRV 190 DLL+QALRCSGAR+ SSQPHAAV+ VDLVVLSDYLVADP +VRD+H E + HL VRV Sbjct 122 DLLMQALRCSGARVGQSSQPHAAVSSGTVDLVVLSDYLVADPRLVRDMHNEGIAHLLVRV 181 Query 191 RDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALAL 250 RDGTG+VGPLV+PGVTSCL CADLHRSD D AWPAIAAQLR TVGVADRATLLATAALAL Sbjct 182 RDGTGLVGPLVIPGVTSCLRCADLHRSDVDRAWPAIAAQLRGTVGVADRATLLATAALAL 241 Query 251 SQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 +QVNRVI AVRG++A +PPSALN TLEFDLNAGSIVARQWTRHP C C Sbjct 242 NQVNRVITAVRGEQADHDPPSALNATLEFDLNAGSIVARQWTRHPLCSC 290 >gi|118463035|ref|YP_883288.1| hypothetical protein MAV_4140 [Mycobacterium avium 104] gi|118164322|gb|ABK65219.1| conserved hypothetical protein [Mycobacterium avium 104] Length=289 Score = 392 bits (1007), Expect = 4e-107, Method: Compositional matrix adjust. Identities = 211/282 (75%), Positives = 231/282 (82%), Gaps = 7/282 (2%) Query 20 YSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQA 79 Y+L+PAMPVLLRPDGAVQVGWDPRRAVLVRPPRGL A LA LLRSM SP P++ELQR+A Sbjct 13 YALDPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLAAAELARLLRSMCSPTPLSELQRRA 72 Query 80 AERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRC 139 E GL D D + NLV QLVGAGVA+ G RA S+R+HGRGPLS+LLV++LRC Sbjct 73 LEHGLTDADGLRNLVTQLVGAGVASECGRSGG-----RAPSVRIHGRGPLSELLVESLRC 127 Query 140 SGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 SGARI HSSQPHAAV+ VDLVVLSDYLVADP +VRDLH + V HLPVRVRDG G+VGP Sbjct 128 SGARIAHSSQPHAAVSGDDVDLVVLSDYLVADPRLVRDLHEQGVAHLPVRVRDGVGLVGP 187 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV+PGVTSCL CADLHR DRDAAWP I AQLRDTVGVADRAT+LAT ALALSQVNRVIAA Sbjct 188 LVIPGVTSCLSCADLHRRDRDAAWPVICAQLRDTVGVADRATVLATGALALSQVNRVIAA 247 Query 260 VRGQEAT--PEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 VRGQ A P PP LN TLEFDL AG+IVAR+W RHP C C Sbjct 248 VRGQPAASDPAPPQTLNATLEFDLQAGAIVARRWDRHPLCSC 289 >gi|254776577|ref|ZP_05218093.1| hypothetical protein MaviaA2_18179 [Mycobacterium avium subsp. avium ATCC 25291] Length=289 Score = 392 bits (1006), Expect = 4e-107, Method: Compositional matrix adjust. Identities = 210/282 (75%), Positives = 231/282 (82%), Gaps = 7/282 (2%) Query 20 YSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQA 79 Y+L+PAMPVLLRPDGAVQVGWDPRRAVLVRPPRGL A LA LLRSM SP P++ELQ +A Sbjct 13 YALDPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLAAAELATLLRSMCSPTPLSELQHRA 72 Query 80 AERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRC 139 E GL D D + NLV QLVGAGVA+ G RA S+R+HGRGPLS+LLV++LRC Sbjct 73 LEHGLTDADGLKNLVTQLVGAGVASECGRSGG-----RAPSVRIHGRGPLSELLVESLRC 127 Query 140 SGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 SGARI HSSQPHAAV+ VDLVVLSDYLVADP +VRDLH + V HLPVRVRDG G+VGP Sbjct 128 SGARIAHSSQPHAAVSGDDVDLVVLSDYLVADPRLVRDLHEQGVAHLPVRVRDGVGLVGP 187 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV+PGVTSCL CADLHR DRDAAWP I AQLRDTVGVADRAT+LAT ALALSQVNRVIAA Sbjct 188 LVIPGVTSCLSCADLHRRDRDAAWPVICAQLRDTVGVADRATVLATGALALSQVNRVIAA 247 Query 260 VRGQEAT--PEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 VRGQ A P PP LN TLEFDL+AG+IVAR+W RHP C C Sbjct 248 VRGQPAASDPAPPQTLNATLEFDLHAGAIVARRWDRHPLCPC 289 >gi|183981391|ref|YP_001849682.1| hypothetical protein MMAR_1368 [Mycobacterium marinum M] gi|183174717|gb|ACC39827.1| conserved hypothetical protein [Mycobacterium marinum M] Length=279 Score = 387 bits (995), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 218/282 (78%), Positives = 235/282 (84%), Gaps = 5/282 (1%) Query 18 ALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQR 77 ALYSL+PAMPVLLRPDGAVQVGWDP+RAVL+RPP GLT T +A LLRSMRSPIPITELQR Sbjct 3 ALYSLDPAMPVLLRPDGAVQVGWDPQRAVLIRPPEGLTTTAVAELLRSMRSPIPITELQR 62 Query 78 QAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQAL 137 A RG V GD +ANLV+QLV AGVAT + D R ASIR+HGRGPLSDLLVQAL Sbjct 63 HATGRGWVPGD-VANLVSQLVDAGVATRR----HRDRTGRTASIRIHGRGPLSDLLVQAL 117 Query 138 RCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMV 197 RCSGARI SSQPHAAVT + VDLVVLSD LVA+P +VRDL E + HLPVRVRDGTG+V Sbjct 118 RCSGARIGQSSQPHAAVTRSAVDLVVLSDNLVAEPRLVRDLQREGIAHLPVRVRDGTGLV 177 Query 198 GPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVI 257 GPLV+PGVTSCL CADLHRSDRD AWPAIAAQLRDTVGVADRAT+LATAALAL QVN VI Sbjct 178 GPLVIPGVTSCLRCADLHRSDRDPAWPAIAAQLRDTVGVADRATVLATAALALRQVNGVI 237 Query 258 AAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 AAVR QE +PP ALN TLEFDL AGS+VAR W RHP C C Sbjct 238 AAVRDQENPSDPPPALNATLEFDLQAGSVVARYWARHPLCSC 279 >gi|118617990|ref|YP_906322.1| hypothetical protein MUL_2508 [Mycobacterium ulcerans Agy99] gi|118570100|gb|ABL04851.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=279 Score = 386 bits (991), Expect = 2e-105, Method: Compositional matrix adjust. Identities = 218/282 (78%), Positives = 235/282 (84%), Gaps = 5/282 (1%) Query 18 ALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQR 77 ALYSL+PAMPVLLRPDGAVQVGWDP+RAVL+RPP GLT T +A LLRSMRSPIPITELQR Sbjct 3 ALYSLDPAMPVLLRPDGAVQVGWDPQRAVLIRPPEGLTTTAVAELLRSMRSPIPITELQR 62 Query 78 QAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQAL 137 A RG V GD +ANLV+QLVGAGVAT R ASIR+HGRGPLSDLLVQAL Sbjct 63 HATGRGWVPGD-VANLVSQLVGAGVATRRHR----HRTGRTASIRIHGRGPLSDLLVQAL 117 Query 138 RCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMV 197 RCSGARI SSQPHAAVT + VDLVVLSD LVA+P +VRDL E + HLPVRVRDGTG+V Sbjct 118 RCSGARIGQSSQPHAAVTRSAVDLVVLSDNLVAEPRLVRDLRREGIAHLPVRVRDGTGLV 177 Query 198 GPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVI 257 GPLV+PGVTSCL CADLHRSDRD AWPAIAAQLRDTVGVADRAT+LATAALAL Q+N VI Sbjct 178 GPLVIPGVTSCLRCADLHRSDRDPAWPAIAAQLRDTVGVADRATVLATAALALRQINGVI 237 Query 258 AAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 AAVR QE +PPSALN TLEFDL AGS+VAR W RHP C C Sbjct 238 AAVRDQENPSDPPSALNATLEFDLQAGSVVARYWARHPLCSC 279 >gi|254821698|ref|ZP_05226699.1| hypothetical protein MintA_17312 [Mycobacterium intracellulare ATCC 13950] Length=288 Score = 380 bits (975), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 216/288 (75%), Positives = 240/288 (84%), Gaps = 7/288 (2%) Query 14 RAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPIT 73 +AA + Y+L+PAMPVLLRPDGAVQVGWDPRRAVLVRPP GL A LA LLR+M SP P+ Sbjct 6 QAALSTYALDPAMPVLLRPDGAVQVGWDPRRAVLVRPPGGLAAAELATLLRTMSSPTPLP 65 Query 74 ELQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLL 133 ELQR+A +RGL D + + +LVAQLV AGVAT P R RA S+RVHGRGPLS+LL Sbjct 66 ELQRRALDRGLTDTEGLRSLVAQLVRAGVATECGRP-----RGRAPSVRVHGRGPLSELL 120 Query 134 VQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDG 193 V++LRCSGARI HSSQPHAAV+ VDLVVLSDYLVADP MVRDLH + V HL VRVRDG Sbjct 121 VESLRCSGARIAHSSQPHAAVSAGDVDLVVLSDYLVADPRMVRDLHDQGVAHLLVRVRDG 180 Query 194 TGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQV 253 G+VGPLV+PGVTSCLGCADLHRSDRDAAWPAI AQLR+TVGVADRAT+LATAALALSQV Sbjct 181 IGLVGPLVIPGVTSCLGCADLHRSDRDAAWPAICAQLRETVGVADRATVLATAALALSQV 240 Query 254 NRVIAAVRGQEA--TPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 NRVIAAVRGQ A PEPP LN TLEFDL+AG+IVARQW +HP C C Sbjct 241 NRVIAAVRGQGAASEPEPPQTLNATLEFDLHAGAIVARQWVKHPLCAC 288 >gi|41409392|ref|NP_962228.1| hypothetical protein MAP3294 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398223|gb|AAS05844.1| hypothetical protein MAP_3294 [Mycobacterium avium subsp. paratuberculosis K-10] Length=289 Score = 378 bits (970), Expect = 8e-103, Method: Compositional matrix adjust. Identities = 213/285 (75%), Positives = 235/285 (83%), Gaps = 7/285 (2%) Query 17 SALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQ 76 +A Y+L+PAMPVLLRPDGAVQVGWDPRRAVLVRPPRGL A LA LLRSM SP P++ELQ Sbjct 10 AATYALDPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLAAAELATLLRSMCSPTPLSELQ 69 Query 77 RQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQA 136 R+A E GL D D + NLV QLVGAGVA+ G RA S+R+HGRGPLS+LLV++ Sbjct 70 RRALEHGLTDADGLRNLVTQLVGAGVASECGRSGG-----RAPSVRIHGRGPLSELLVES 124 Query 137 LRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGM 196 LRCSGARI HSSQPHAAV+ VDLVVLSDYLVADP +VRDLH + V HLPVRVRDG G+ Sbjct 125 LRCSGARIAHSSQPHAAVSGDDVDLVVLSDYLVADPRLVRDLHEQGVAHLPVRVRDGVGL 184 Query 197 VGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRV 256 VGPLV+PGVTSCL CADLHR DRDAAWP I AQLRDTVGVADRAT+LATAALALSQVNRV Sbjct 185 VGPLVIPGVTSCLSCADLHRRDRDAAWPVICAQLRDTVGVADRATVLATAALALSQVNRV 244 Query 257 IAAVRGQEAT--PEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 IAAVRGQ A P PP LN TLEFDL+AG+IVAR+W RHP C C Sbjct 245 IAAVRGQPAASDPAPPQTLNATLEFDLHAGAIVARRWDRHPLCSC 289 >gi|333991549|ref|YP_004524163.1| hypothetical protein JDM601_2909 [Mycobacterium sp. JDM601] gi|333487517|gb|AEF36909.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=289 Score = 372 bits (955), Expect = 4e-101, Method: Compositional matrix adjust. Identities = 197/282 (70%), Positives = 228/282 (81%), Gaps = 5/282 (1%) Query 20 YSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQA 79 Y+L+PA PVLLRPDGAVQVGWDP RAVLV+PPRGLTATGLAA+LR+M++P EL+ +A Sbjct 11 YTLDPARPVLLRPDGAVQVGWDPGRAVLVQPPRGLTATGLAAVLRTMQTPATAAELRLEA 70 Query 80 AERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRC 139 A G VD + NL++ LVGAGVA + P RR AS+RVHGRGPLSDLLV++LRC Sbjct 71 ARHGTVDTAELDNLLSALVGAGVAVRDSAPRR---PRRTASLRVHGRGPLSDLLVESLRC 127 Query 140 SGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 SGA +R SSQPHAAV+ AG DLVVLSDYLVADP +VR+LH ERV HL VRVRDGTG+VGP Sbjct 128 SGAVVRRSSQPHAAVSTAGTDLVVLSDYLVADPRLVRELHAERVAHLAVRVRDGTGVVGP 187 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV+PG+TSCLGCADLHR DRDA+WPA+AAQLRDTV +DRAT+LAT ALALSQV+RVIAA Sbjct 188 LVLPGMTSCLGCADLHRRDRDASWPAVAAQLRDTVAHSDRATVLATVALALSQVDRVIAA 247 Query 260 VRGQEATPE--PPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 VRG A + PP LN TLE DL GSI+ R+W RHP C C Sbjct 248 VRGPAAGSDLGPPPTLNATLEMDLATGSIMTRRWARHPLCGC 289 >gi|336459539|gb|EGO38476.1| hypothetical protein MAPs_02670 [Mycobacterium avium subsp. paratuberculosis S397] Length=271 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 208/276 (76%), Positives = 227/276 (83%), Gaps = 7/276 (2%) Query 26 MPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAERGLV 85 MPVLLRPDGAVQVGWDPRRAVLVRPPRGL A LA LLRSM SP P++ELQR+A E GL Sbjct 1 MPVLLRPDGAVQVGWDPRRAVLVRPPRGLAAAELATLLRSMCSPTPLSELQRRALEHGLT 60 Query 86 DGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCSGARIR 145 D D + NLV QLVGAGVA+ G RA S+R+HGRGPLS+LLV++LRCSGARI Sbjct 61 DADGLRNLVTQLVGAGVASECGRSGG-----RAPSVRIHGRGPLSELLVESLRCSGARIA 115 Query 146 HSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGV 205 HSSQPHAAV+ VDLVVLSDYLVADP +VRDLH + V HLPVRVRDG G+VGPLV+PGV Sbjct 116 HSSQPHAAVSGDDVDLVVLSDYLVADPRLVRDLHEQGVAHLPVRVRDGVGLVGPLVIPGV 175 Query 206 TSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEA 265 TSCL CADLHR DRDAAWP I AQLRDTVGVADRAT+LATAALALSQVNRVIAAVRGQ A Sbjct 176 TSCLSCADLHRRDRDAAWPVICAQLRDTVGVADRATVLATAALALSQVNRVIAAVRGQPA 235 Query 266 T--PEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 P PP LN TLEFDL+AG+IVAR+W RHP C C Sbjct 236 ASDPAPPQTLNATLEFDLHAGAIVARRWDRHPLCSC 271 >gi|342861149|ref|ZP_08717798.1| hypothetical protein MCOL_19797 [Mycobacterium colombiense CECT 3035] gi|342131593|gb|EGT84863.1| hypothetical protein MCOL_19797 [Mycobacterium colombiense CECT 3035] Length=269 Score = 361 bits (926), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 198/274 (73%), Positives = 220/274 (81%), Gaps = 7/274 (2%) Query 28 VLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAERGLVDG 87 +LLRPDGAVQVGWDPRRAVLV PP GL A LA LLR+M SP P+ ELQR+A +RGL D Sbjct 1 MLLRPDGAVQVGWDPRRAVLVHPPAGLAAAELATLLRTMGSPTPLPELQRRALDRGLTDA 60 Query 88 DAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCSGARIRHS 147 D + NLVAQLV AGVA+ P R RAAS+R+HGRGPLS+LLV+ LRCSGARI HS Sbjct 61 DGLRNLVAQLVDAGVASECGRP-----RARAASVRIHGRGPLSELLVETLRCSGARIAHS 115 Query 148 SQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTS 207 SQPHAAV+ VDLVVLSD+LVADP MVRDLH + V HL VRVRDG G+VGPLV+PGVTS Sbjct 116 SQPHAAVSADDVDLVVLSDFLVADPRMVRDLHQQGVAHLLVRVRDGIGLVGPLVIPGVTS 175 Query 208 CLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEA-- 265 CLGCADLHR DRD AWPAI AQLR+TVGVADR T+LATAALALSQVNRVIAAV G A Sbjct 176 CLGCADLHRRDRDEAWPAICAQLRETVGVADRPTVLATAALALSQVNRVIAAVHGPGAAT 235 Query 266 TPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 P PP LN TLEFDL+AG+IV R+W +HP C C Sbjct 236 EPAPPQTLNATLEFDLHAGAIVTRRWAKHPLCSC 269 >gi|126434067|ref|YP_001069758.1| hypothetical protein Mjls_1466 [Mycobacterium sp. JLS] gi|126233867|gb|ABN97267.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=280 Score = 301 bits (772), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 166/282 (59%), Positives = 201/282 (72%), Gaps = 7/282 (2%) Query 20 YSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQA 79 Y L +PVLLRPDGAVQ+GWDPRRA+LVRPP GLTA+ LA LLR+++S + +L A Sbjct 4 YRLRETLPVLLRPDGAVQIGWDPRRAMLVRPPAGLTASALADLLRTLQSGMTTADLYAAA 63 Query 80 AERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRC 139 ERG D + +V+ L GAGV T +P R S+R+HGRGPLSDLLV LRC Sbjct 64 RERGTADPAELTEIVSALAGAGVLT--VDPAR---HGRTPSVRIHGRGPLSDLLVAGLRC 118 Query 140 SGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 SGAR+ H+ P P DLVVL+DYLVA+P +VRDLH V HLPVRVRDG G++GP Sbjct 119 SGARVGHTRSPKPPAPPEATDLVVLADYLVAEPRVVRDLHDAHVAHLPVRVRDGCGLIGP 178 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV PG TSCL CADLHRSDRDAAWP +AAQLR TVG ADR T+LATAA+AL +++RV+ A Sbjct 179 LVFPGRTSCLSCADLHRSDRDAAWPTLAAQLRGTVGSADRPTVLATAAVALDRIHRVLRA 238 Query 260 VR--GQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 VR G A P+A +TT EFD+ + V R+W+RHPRC C Sbjct 239 VRDTGDPAAAADPAATDTTWEFDVGTRTTVVRRWSRHPRCTC 280 >gi|108798383|ref|YP_638580.1| hypothetical protein Mmcs_1412 [Mycobacterium sp. MCS] gi|119867480|ref|YP_937432.1| hypothetical protein Mkms_1430 [Mycobacterium sp. KMS] gi|108768802|gb|ABG07524.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119693569|gb|ABL90642.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=280 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 166/284 (59%), Positives = 202/284 (72%), Gaps = 11/284 (3%) Query 20 YSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQA 79 Y L A+PVLLRPDGAVQ+GWDPRRA+LVRPP GLTA+ LA LLR+++S + +L A Sbjct 4 YRLREALPVLLRPDGAVQIGWDPRRAMLVRPPAGLTASALADLLRTLQSGMTTADLYAAA 63 Query 80 AERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRR--RAASIRVHGRGPLSDLLVQAL 137 E G D + +V+ L GAGV +DS R R S+R+HGRGPLSDLLV L Sbjct 64 REHGTADPAELTEIVSALAGAGVLI-------VDSPRHGRTPSVRIHGRGPLSDLLVAGL 116 Query 138 RCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMV 197 RCSGAR+ H+ P P DLVVL+DYLVA+P +VRDLH V HLPVRVRDG G++ Sbjct 117 RCSGARVGHTRSPKPPAPPEATDLVVLADYLVAEPRVVRDLHDAHVAHLPVRVRDGCGLI 176 Query 198 GPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVI 257 GPLV PG TSCL CADLHRSDRDAAWP +AAQLR TVG ADR T+LATAA+AL +++RV+ Sbjct 177 GPLVFPGRTSCLSCADLHRSDRDAAWPTLAAQLRGTVGSADRPTVLATAAVALDRIHRVL 236 Query 258 AAVR--GQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 A+R G A P+A +TT EFD+ + V R+W+RHPRC C Sbjct 237 RAIRDTGDPAAAADPAATDTTWEFDVGTRTTVVRRWSRHPRCTC 280 >gi|120402810|ref|YP_952639.1| hypothetical protein Mvan_1811 [Mycobacterium vanbaalenii PYR-1] gi|119955628|gb|ABM12633.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=273 Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 164/280 (59%), Positives = 202/280 (73%), Gaps = 10/280 (3%) Query 20 YSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQA 79 Y+++ A PVL RPDG VQVGWDPRRAV+V PP GL A LA LLR+++ ELQ+ A Sbjct 4 YAVSSATPVLSRPDGTVQVGWDPRRAVVVHPPAGLPAAVLAELLRALQGAATAPELQKVA 63 Query 80 AERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRC 139 A G V +A L++ LV AGV P P +D R+ ++RVHG GPL+DLL +LRC Sbjct 64 AGHG-VAATVVAGLLSHLVDAGVVVP--TPPGVD---RSPAVRVHGSGPLTDLLTASLRC 117 Query 140 SGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 S RI S++ HA+ AG DLVVL+DYLVADP +VR+LH V HLPVRVRDGTG++GP Sbjct 118 SNVRISQSTRTHAST--AGADLVVLTDYLVADPRVVRELHDAGVAHLPVRVRDGTGLIGP 175 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV+PGVTSCL C DLHRSDRD AWPA+AAQL TVG ADR T+LATAALAL ++ V+ A Sbjct 176 LVIPGVTSCLRCGDLHRSDRDPAWPAVAAQLCRTVGSADRPTILATAALALREIEHVLRA 235 Query 260 VRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 VRG A + PS L+TTLEF++ G+ AR+W+RHP C C Sbjct 236 VRG--AGTDSPSTLDTTLEFEVATGTSTARRWSRHPSCGC 273 >gi|315445531|ref|YP_004078410.1| hypothetical protein Mspyr1_39870 [Mycobacterium sp. Spyr1] gi|315263834|gb|ADU00576.1| hypothetical protein Mspyr1_39870 [Mycobacterium sp. Spyr1] Length=277 Score = 278 bits (710), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 163/282 (58%), Positives = 205/282 (73%), Gaps = 10/282 (3%) Query 20 YSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQA 79 Y+L+PA PVL RPDG VQVGWDPR+AV+VRPP GL + LA LLR+++ +LQR A Sbjct 4 YALSPATPVLSRPDGTVQVGWDPRKAVVVRPPAGLPGSVLAELLRALQGVATAPQLQRLA 63 Query 80 AERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRC 139 A G VD + LVA L+ GV T + R+ ++RVHG GPL+DLL+ +LR Sbjct 64 AGYG-VDAPVVDGLVAHLITRGVVTEAPR-----TPVRSVAVRVHGDGPLADLLINSLRH 117 Query 140 SGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 + R+ HS++P+A + DLVVL+DYLVADP +VRDL RVPHLPVRVRDGTG+VGP Sbjct 118 ANVRVSHSTRPNA--SSGRPDLVVLTDYLVADPRLVRDLCDARVPHLPVRVRDGTGLVGP 175 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV+P VTSCL CADLHRSDRDAAWPAIAAQL TVG ADRAT+LATAALAL++++ ++ + Sbjct 176 LVIPSVTSCLRCADLHRSDRDAAWPAIAAQLSRTVGNADRATVLATAALALNEIDHIVRS 235 Query 260 VRGQE--ATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 +R A P L+TTLEFD+ AG++ AR+WTRHP C C Sbjct 236 LRPDHPGAVAASPETLDTTLEFDVAAGTVQARRWTRHPDCSC 277 >gi|145225235|ref|YP_001135913.1| hypothetical protein Mflv_4657 [Mycobacterium gilvum PYR-GCK] gi|145217721|gb|ABP47125.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=283 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 164/282 (59%), Positives = 205/282 (73%), Gaps = 10/282 (3%) Query 20 YSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQA 79 Y+L+PA PVL RPDG VQVGWDPR+AV+VRPP GL + LA LLR+++ +LQR A Sbjct 10 YALSPATPVLSRPDGTVQVGWDPRKAVVVRPPAGLPGSVLAELLRALQGVATAPQLQRLA 69 Query 80 AERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRC 139 A G VD + LVA LV GV T + R+ ++RVHG GPL+DLL+ +LR Sbjct 70 AGHG-VDAPVVDGLVAHLVTRGVVTEAPR-----TPVRSVAVRVHGDGPLADLLISSLRH 123 Query 140 SGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 + R+ HS++P+A + DLVVL+DYLVADP +VRDL RVPHLPVRVRDGTG+VGP Sbjct 124 ANVRVSHSTRPNA--SSGRPDLVVLTDYLVADPRLVRDLCDARVPHLPVRVRDGTGLVGP 181 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV+P VTSCL CADLHRSDRDAAWPAIAAQL TVG ADRAT+LATAALAL++++ ++ + Sbjct 182 LVIPSVTSCLRCADLHRSDRDAAWPAIAAQLSRTVGNADRATVLATAALALNEIDHIVRS 241 Query 260 VRGQE--ATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 +R A P L+TTLEFD+ AG++ AR+WTRHP C C Sbjct 242 LRPDHPGAVAASPETLDTTLEFDVAAGTVQARRWTRHPDCSC 283 >gi|118472615|ref|YP_886322.1| hypothetical protein MSMEG_1955 [Mycobacterium smegmatis str. MC2 155] gi|118173902|gb|ABK74798.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=279 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 159/286 (56%), Positives = 204/286 (72%), Gaps = 11/286 (3%) Query 17 SALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQ 76 +A ++L P PVLLRPDGAVQ+GWDPR AV VRPP G+T T L LL ++++ I +L+ Sbjct 2 TARFTLTPDRPVLLRPDGAVQIGWDPRTAVRVRPPDGMTPTQLTDLLHALQTGRSIEQLR 61 Query 77 RQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQA 136 + G D + +++A L AGV + S R A+IR+HGRGPLS+LL + Sbjct 62 SATEQFG--DPALVGDVLAALDSAGVLVRRSA-----SPARTATIRIHGRGPLSELLAGS 114 Query 137 LRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGM 196 LR SGAR++H+++ +A P G DLVVL+D LV +P +VR+LH R+ HLPVRVRDGTG+ Sbjct 115 LRRSGARLQHTAESYATPRP-GTDLVVLADELVTEPRIVRELHRGRIAHLPVRVRDGTGL 173 Query 197 VGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRV 256 VGPLV+PGVTSCL CADLHR+DRDAAWPA+AAQLR TVG A RAT+LATAALAL QV+ V Sbjct 174 VGPLVIPGVTSCLHCADLHRADRDAAWPALAAQLRGTVGSASRATILATAALALRQVDLV 233 Query 257 IAAVRGQ---EATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 I AV G + PEPP+ L+TTLE + S+ R+W+RHP C C Sbjct 234 IRAVSGTAGPDDPPEPPATLDTTLELTADGYSMSFRRWSRHPDCQC 279 >gi|296169039|ref|ZP_06850701.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896298|gb|EFG75957.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=166 Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 135/168 (81%), Positives = 143/168 (86%), Gaps = 2/168 (1%) Query 132 LLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVR 191 +LV+ALRCSGARI HS QPHA VT VDLVVLSDYLVADP MVRDLH VPHLPVRVR Sbjct 1 MLVEALRCSGARIAHSRQPHAGVTAGAVDLVVLSDYLVADPRMVRDLHARGVPHLPVRVR 60 Query 192 DGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALS 251 DG G+VGPLV+PG TSCL CADLHR DRDAAWPAI+AQLR+T+GVADRATLLATAALALS Sbjct 61 DGVGLVGPLVIPGTTSCLTCADLHRRDRDAAWPAISAQLRETIGVADRATLLATAALALS 120 Query 252 QVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 QVNRVIAAVR QEA PP LN TLEFDL AG+IVAR WTRHP C C Sbjct 121 QVNRVIAAVRRQEAV--PPQTLNATLEFDLVAGAIVARHWTRHPLCAC 166 >gi|169630583|ref|YP_001704232.1| hypothetical protein MAB_3502 [Mycobacterium abscessus ATCC 19977] gi|169242550|emb|CAM63578.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=292 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 134/299 (45%), Positives = 180/299 (61%), Gaps = 22/299 (7%) Query 8 PSQVMRRAASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMR 67 P VM ++ ++L+PA PVL RPD +Q+GW PR AV+V TG AA ++R Sbjct 2 PQWVM--SSEPTFTLDPARPVLPRPDDGIQIGWTPRHAVVVH-------TGSAAPTHAVR 52 Query 68 SPIPI-------TELQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAAS 120 + ++ + D D + +L+ +LV AG P N S Sbjct 53 QLLSSLSDELSWEQIVNLRCAKDFRDPDDIRSLLEELVAAGAVIRRIRPTNPAS----PV 108 Query 121 IRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHT 180 IR+ GRGPLSD L +ALR + ARI+H++ + VDL VL+D L+AD ++R L Sbjct 109 IRLVGRGPLSDALAEALRHTSARIQHTTHSVHGKSWQHVDLAVLADDLIADTRLLRMLAD 168 Query 181 ERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRA 240 VPHL VR RDGTG++GP+V+PG+TSCL CAD HR DRD WPA+AAQL TVGVA A Sbjct 169 AEVPHLSVRARDGTGLIGPMVLPGITSCLECADRHRHDRDEQWPAVAAQLTGTVGVAAPA 228 Query 241 TLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 T+L T A+AL+Q++RV++A+RGQ P P + LN TLE DL ++ AR WT HP C C Sbjct 229 TVLGTVAVALAQIDRVLSAMRGQP--PGPLATLNATLELDLATHALTARHWTAHPLCPC 285 >gi|325675764|ref|ZP_08155448.1| hypothetical protein HMPREF0724_13230 [Rhodococcus equi ATCC 33707] gi|325553735|gb|EGD23413.1| hypothetical protein HMPREF0724_13230 [Rhodococcus equi ATCC 33707] Length=297 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/280 (43%), Positives = 164/280 (59%), Gaps = 13/280 (4%) Query 22 LNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAE 81 L+P +PVL+RP G +Q+GWDP ++++ PP + L ++L + + +A E Sbjct 14 LDPRLPVLVRPSGRLQIGWDPETSIILTPPPSVDPQALVSVLGLLDGRTSRPGVVWRAVE 73 Query 82 RGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCSG 141 G+ D M+ ++++L AG P P + +IRVHGRGPL+D + AL Sbjct 74 HGIAPAD-MSTILSELEEAGALRPAPTPPD-----DVPTIRVHGRGPLADAISSALTTGP 127 Query 142 ARIRHSSQPHAA--VTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 AR+ S+ A VT VVL+D LV DP +V L +PHLPVR+RDG G+VGP Sbjct 128 ARVTRSTHFTADTDVTTWNCLCVVLTDELVVDPRLVDALLVAGIPHLPVRLRDGRGVVGP 187 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV+PG TSCL CADL RSD D WP +AAQL VG A AT+LAT A+AL Q+ V++ Sbjct 188 LVLPGSTSCLRCADLTRSDADEEWPHVAAQLLGRVGHAGPATVLATTAVALGQLEMVLS- 246 Query 260 VRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 + A P P++L+ TLE DL++ R W R PRC C Sbjct 247 ---RAARPA-PASLDATLEIDLDSHRFAVRPWPRDPRCGC 282 >gi|312140609|ref|YP_004007945.1| hypothetical protein REQ_32670 [Rhodococcus equi 103S] gi|311889948|emb|CBH49265.1| conserved hypothetical protein [Rhodococcus equi 103S] Length=297 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/280 (43%), Positives = 164/280 (59%), Gaps = 13/280 (4%) Query 22 LNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAE 81 L+P +PVL+RP G +Q+GWDP ++++ PP + L ++L + + +A E Sbjct 14 LDPRLPVLVRPSGRLQIGWDPETSIILTPPPSVDPQALVSVLGLLDGRTSRPGVVWRAVE 73 Query 82 RGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCSG 141 G+ D M+ ++++L AG P P + +IRVHGRGPL+D + AL Sbjct 74 HGIAPAD-MSTILSELEEAGALRPAPTPPD-----DVPTIRVHGRGPLADAISSALITGP 127 Query 142 ARIRHSSQPHAA--VTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 AR+ S+ A VT VVL+D LV DP +V L +PHLPVR+RDG G+VGP Sbjct 128 ARVTRSTHFTADTDVTTWNCLCVVLTDELVVDPRLVDALLVAGIPHLPVRLRDGRGVVGP 187 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV+PG TSCL CADL RSD D WP +AAQL VG A AT+LAT A+AL Q+ V++ Sbjct 188 LVLPGSTSCLRCADLTRSDADEEWPHVAAQLLGRVGHAAPATVLATTAVALGQLEMVLS- 246 Query 260 VRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 + A P P++L+ TLE DL++ R W R PRC C Sbjct 247 ---RAARPA-PASLDATLEIDLDSHRFAVRPWPRDPRCGC 282 >gi|226365855|ref|YP_002783638.1| hypothetical protein ROP_64460 [Rhodococcus opacus B4] gi|226244345|dbj|BAH54693.1| hypothetical protein [Rhodococcus opacus B4] Length=296 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 124/286 (44%), Positives = 166/286 (59%), Gaps = 22/286 (7%) Query 21 SLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAA 80 +L+P + VL+RPDG VQ GWDP RA+++ PP G+ L A++R + + A Sbjct 12 TLDPRIAVLVRPDGRVQFGWDPERALVLSPPPGVRTEQLLAVVRLLDGKNTRPHILWTAV 71 Query 81 ERGLVDGDAMANLVAQLVGAGV-----ATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQ 135 GL D ++ L+ L AG+ +P+A+ +IRVHGRGPLSD + Sbjct 72 GYGLAPTD-VSKLLGDLDRAGLIDVAGTSPVAD---------TITIRVHGRGPLSDAVSA 121 Query 136 ALRCSGARIRHSSQPHAAVTPAGVD--LVVLSDYLVADPHMVRDLHTERVPHLPVRVRDG 193 L G R+ S + A V + VVL+D LVADP + DL +PHL VR+RDG Sbjct 122 GLTDGGIRVSRSFRYSADVDVRRWNALCVVLADDLVADPRLAADLVQNGIPHLQVRLRDG 181 Query 194 TGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQV 253 G+VGPLV+PG TSCL CADL RS D WP ++AQL TVG A A ++ATAA+AL Q+ Sbjct 182 RGVVGPLVLPGHTSCLRCADLLRSAYDEDWPYLSAQLLGTVGHASPAVIMATAAVALGQL 241 Query 254 NRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 V++A RG PPS+L+ TLE DL A +V R+W R C C Sbjct 242 EVVLSAPRG-----APPSSLDATLEIDLGAHRLVTRRWPRQASCSC 282 >gi|111023348|ref|YP_706320.1| hypothetical protein RHA1_ro06385 [Rhodococcus jostii RHA1] gi|110822878|gb|ABG98162.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=304 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 124/286 (44%), Positives = 165/286 (58%), Gaps = 22/286 (7%) Query 21 SLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAA 80 +L+P + VL+RPDG VQ GWDP RA+++ PP G+ L A++R + + A Sbjct 19 TLDPRIAVLVRPDGRVQFGWDPERALVLAPPPGVRTEQLLAVVRLLDGKNSRPHILWTAV 78 Query 81 ERGLVDGDAMANLVAQLVGAGV-----ATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQ 135 GL D ++ L+ L AG+ +P+A+ IRVHGRGPLSD + Sbjct 79 GYGLAPTD-VSKLLGDLDRAGLIDVAGTSPVAD---------TIPIRVHGRGPLSDAVSA 128 Query 136 ALRCSGARIRHSSQPHAA--VTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDG 193 L G R+ S + A V V VVL+D LVA+P +V DL +PHL VR+RDG Sbjct 129 GLTDGGIRVSRSFRYSADSDVRRWNVLCVVLADDLVAEPRLVADLVQNGIPHLQVRLRDG 188 Query 194 TGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQV 253 G+VGPLV+PG TSCL CADL R+ D WP ++AQL TVG A A ++ATAA+AL Q+ Sbjct 189 RGVVGPLVLPGHTSCLRCADLLRAAYDEDWPHLSAQLLGTVGHASPAVIMATAAVALGQL 248 Query 254 NRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 V+AA RG PPS+L+ TLE DL A + R+W R C C Sbjct 249 EAVLAAPRG-----APPSSLDATLEIDLGAHRLSTRRWPRQASCSC 289 >gi|262203369|ref|YP_003274577.1| hypothetical protein Gbro_3491 [Gordonia bronchialis DSM 43247] gi|262086716|gb|ACY22684.1| hypothetical protein Gbro_3491 [Gordonia bronchialis DSM 43247] Length=306 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 115/286 (41%), Positives = 169/286 (60%), Gaps = 17/286 (5%) Query 22 LNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAE 81 + P P+L+RP V VG DP ++++ ++A+G+A LLRSM+ P +L +A Sbjct 11 IQPGTPILVRPSNRVHVGTDPACSLIIDVDDPVSASGVADLLRSMQQPCRPEDLVLRARA 70 Query 82 RGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAAS---IRVHGRGPLSDLLVQALR 138 GL D A ++ +L+ AG A + + R+AS +R+HG+GPL+DL+ L Sbjct 71 AGLSTADLDA-ILHELIDAGKA--------VTTEPRSASPLRVRIHGQGPLADLIGALLS 121 Query 139 CSGARIRHSSQPHA--AVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGM 196 +G RH+++ A A+ +LVVL+D+LV DP +V L+ R+PHL VRVRDG G+ Sbjct 122 DTGIATRHTTRRPATGAIESWDANLVVLTDFLVHDPSVVSTLNRLRLPHLQVRVRDGIGI 181 Query 197 VGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRV 256 VGPLV+PG++SCL CAD HR+ D WP +AAQL G AT+ ATAALA +Q+ ++ Sbjct 182 VGPLVLPGMSSCLRCADHHRTTMDPDWPLLAAQLVRRPGYGSSATIRATAALAHAQIEQL 241 Query 257 IAAV--RGQEATPEP-PSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 +A+ G E++ P P L+ LEF G + W HP C C Sbjct 242 ASALLAAGHESSSHPRPRLLDHVLEFRPGTGRLETTYWPPHPLCEC 287 >gi|343928364|ref|ZP_08767814.1| hypothetical protein GOALK_115_00070 [Gordonia alkanivorans NBRC 16433] gi|343761729|dbj|GAA14740.1| hypothetical protein GOALK_115_00070 [Gordonia alkanivorans NBRC 16433] Length=303 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/289 (40%), Positives = 160/289 (56%), Gaps = 17/289 (5%) Query 22 LNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAE 81 + P +L+RP V VG DP +V++ ++A +AA+LR++ P L R+A+ Sbjct 8 IRPGTSILVRPGNRVHVGIDPAGSVIIELDDAISAHSVAAMLRTLERPCTPELLIRRASA 67 Query 82 RGLVDGDAMANLVAQLVGAG-------VATPLANPGNLDSRRRAASIRVHGRGPLSDLLV 134 GL D D + L+ L AG T A+P + R I++HG+GPLSDLL Sbjct 68 AGLAD-DEIRTLLDGLTAAGRTITGGEADTSSASPDPTEFR-----IQIHGQGPLSDLLG 121 Query 135 QALRCSGARIRHSSQPHAAVTPAGVD--LVVLSDYLVADPHMVRDLHTERVPHLPVRVRD 192 +LR G ++ + + A + VD LV+LSD+LV DP +V L R+PHL VR RD Sbjct 122 ASLRAQGLHVQRTMRRRADGSLDTVDTRLVILSDFLVHDPRVVFALTRARIPHLLVRARD 181 Query 193 GTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQ 252 G G+VGPLV+PG++SCL CAD HRSD D WP +A QL G D A + TAA+A Q Sbjct 182 GVGIVGPLVLPGLSSCLMCADHHRSDADPEWPMMAVQLIRAPGDPDPAIVRPTAAIAHGQ 241 Query 253 VNRVIAAVR--GQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 + R++ A+R A P LN LEF + + R+W HP C C Sbjct 242 IERLVTALRRPSPAAARGTPQLLNQVLEFRDDPVRVDRREWLPHPSCDC 290 >gi|226305714|ref|YP_002765674.1| hypothetical protein RER_22270 [Rhodococcus erythropolis PR4] gi|226184831|dbj|BAH32935.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=303 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 107/279 (39%), Positives = 154/279 (56%), Gaps = 16/279 (5%) Query 23 NPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAER 82 +P + VL RPDG +Q+GW P RAVL+ P G+ A + ++LR M + +A+ R Sbjct 24 DPRIAVLSRPDGRLQLGWTPGRAVLLTLPVGVDARAVKSILRKMDGSRSRATILWEASTR 83 Query 83 GLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCSGA 142 G + L+ QL +G A RR S+R+HG GPLSD + +AL G Sbjct 84 G-ISTSVTEKLLEQLTDSGFVHTAA--------RRTVSVRIHGVGPLSDAVERALVTGGV 134 Query 143 RIRHS--SQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPL 200 R S + V LVVL+D +V DP +V DL +PHL VR+RDG G++GPL Sbjct 135 STRRSRGYRNTDVVRTWNEQLVVLADDVVTDPRLVSDLVRCGLPHLSVRIRDGNGVIGPL 194 Query 201 VVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAV 260 VVPG +SCL CAD+ RS+ D W ++AQL + G A+ A + A+ ALAL++++ ++ Sbjct 195 VVPGQSSCLRCADIIRSELDPHWLHLSAQLLGSAGHAESAMIHASVALALAEIDSALS-- 252 Query 261 RGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 E T ++L++TLE L I R+W R C C Sbjct 253 ---ETTATHAASLSSTLEIALRPYRITTRRWPRQISCSC 288 >gi|229491018|ref|ZP_04384851.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229322134|gb|EEN87922.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=304 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 106/280 (38%), Positives = 154/280 (55%), Gaps = 18/280 (6%) Query 23 NPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAER 82 +P + VL RPDG +Q+GW P RAVL+ P G+ + ++LR M + +A+ R Sbjct 25 DPRIAVLSRPDGRLQLGWTPGRAVLLTLPVGVDDRAVKSILRKMDGSRSRANILWEASRR 84 Query 83 GLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQAL---RC 139 G + L+ QL +G +RR A++R+HG GPLSD + +AL R Sbjct 85 G-IPTSVTEELLEQLADSGFVHT--------ARRSPATVRIHGVGPLSDAIERALVTGRV 135 Query 140 SGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 S R R + V LVVLSD +V DP +V DL +PHL VR+RDG G+VGP Sbjct 136 STRRSR-GYRNTDVVRTWNEQLVVLSDDVVTDPRLVSDLVRCGLPHLSVRIRDGNGVVGP 194 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV+PG +SCL CAD+ RS+ D W ++AQL + G A+ A + A+ ALAL++++ ++ Sbjct 195 LVLPGQSSCLRCADILRSELDPHWLHLSAQLLGSAGHAESAMIHASVALALAEIDSALSE 254 Query 260 VRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 A ++L++TLE L I R+W R C C Sbjct 255 TAATHA-----ASLSSTLEIALRPYRITTRRWPRQISCSC 289 >gi|54026503|ref|YP_120745.1| hypothetical protein nfa45300 [Nocardia farcinica IFM 10152] gi|54018011|dbj|BAD59381.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=289 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 120/280 (43%), Positives = 159/280 (57%), Gaps = 14/280 (5%) Query 22 LNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAE 81 L+P + VL+RP G VQ+GWDP RA+L+ PP GL + LR + E+ +A E Sbjct 13 LHPRVTVLVRPSGVVQLGWDPERALLLDPP-GLDTAAVLGFLRLLDGLRTRPEILWEA-E 70 Query 82 RGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCSG 141 RG + + L+ ++ AG+ L P R +RVHG GPLSD + LR G Sbjct 71 RGGIAAERAGALLDEIDAAGL---LRAPRE--RPRDVRVVRVHGLGPLSDAVTAGLRGLG 125 Query 142 ARIRHS--SQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGP 199 R S +P DLVVL+D +V DP +V DL RVPH+ VRVRDG G+VGP Sbjct 126 VRAARSRGYRPEKPARGTHADLVVLTDTVVVDPRLVADLVIHRVPHIHVRVRDGKGIVGP 185 Query 200 LVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAA 259 LV+PG TSCL CADL ++D D WP +AAQL D VG A A + ATAALAL ++ ++ Sbjct 186 LVLPGATSCLRCADLTKADYDPDWPHLAAQLLDRVGHASPAAVAATAALALGELEAIV-- 243 Query 260 VRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 + + P+ L+ TLE DL+ + R W HPRC C Sbjct 244 ---EGSARRAPATLDATLELDLDTYQLHHRPWNPHPRCGC 280 >gi|326383317|ref|ZP_08205005.1| hypothetical protein SCNU_10284 [Gordonia neofelifaecis NRRL B-59395] gi|326198067|gb|EGD55253.1| hypothetical protein SCNU_10284 [Gordonia neofelifaecis NRRL B-59395] Length=320 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 109/287 (38%), Positives = 148/287 (52%), Gaps = 11/287 (3%) Query 15 AASALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITE 74 A AL L P PVL R DG + +G DPR A +V G+T + + ALL +R+P Sbjct 19 ARDALPVLLPGTPVLARIDGRIHIGADPRTATVVSLGPGVTVSAVVALLHRLRTPQRYRH 78 Query 75 LQRQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLV 134 L+RQ GL LV +LV +G A A+PG R + V G G ++ LL+ Sbjct 79 LRRQLRSSGLT-ATRFWQLVDELVESGRAVE-ADPGT----RAPLRVAVAGHGEIAALLL 132 Query 135 QALRCSGARIRHSSQPHAAVTPAGVD--LVVLSDYLVADPHMVRDLHTERVPHLPVRVRD 192 L G R+ + P + G LVV++D V DP + L VPHL V VRD Sbjct 133 DGLPRDGHRVV-ACDPRDPLGDIGRRPALVVVADQPVPDPVVWEPLMAAGVPHLAVHVRD 191 Query 193 GTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQ 252 G+VGPLV+PG++SCL C +LHR+D D AWP IAA L G A L+T A+A +Q Sbjct 192 DVGVVGPLVLPGLSSCLRCVELHRTDLDEAWPVIAATLHGVAGAGGTAARLSTVAVAHAQ 251 Query 253 VNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 + + +E+ PP+ + TT+EF + R HPRC C Sbjct 252 IAEIADQRFHRESA--PPTTIGTTIEFHQRPCRMEVRPAPVHPRCGC 296 >gi|333921397|ref|YP_004494978.1| hypothetical protein AS9A_3740 [Amycolicicoccus subflavus DQS3-9A1] gi|333483618|gb|AEF42178.1| hypothetical protein AS9A_3740 [Amycolicicoccus subflavus DQS3-9A1] Length=202 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 85/187 (46%), Positives = 111/187 (60%), Gaps = 7/187 (3%) Query 120 SIRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAGVD-----LVVLSDYLVADPHM 174 ++ + GRGPL+D+L AL G R+ + P+ + + LVVL+D + P + Sbjct 3 AVALAGRGPLADVLAGALPDLGVRLTQFTTPNQQRSQGCIARTRPLLVVLTDSALVSPVL 62 Query 175 VRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTV 234 L E++PHL VRVRDG G+VGPLV+PG TSCL CADL+R+DRD WP IAAQL +V Sbjct 63 NDFLIREQLPHLAVRVRDGRGLVGPLVLPGATSCLRCADLYRADRDPEWPHIAAQLTGSV 122 Query 235 GVADRATLLATAALALSQVNRVIAAVR--GQEATPEPPSALNTTLEFDLNAGSIVARQWT 292 A AT+ A A ALSQV V+AA R P PP+ L T+E D ++ R W Sbjct 123 PHASPATVHAAAGYALSQVELVLAAARRPNNTGPPGPPATLGATVEIDPLMVTMTTRDWP 182 Query 293 RHPRCFC 299 RHP C C Sbjct 183 RHPLCAC 189 >gi|257054821|ref|YP_003132653.1| molybdopterin/thiamine biosynthesis dinucleotide-utilizing protein [Saccharomonospora viridis DSM 43017] gi|256584693|gb|ACU95826.1| dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis [Saccharomonospora viridis DSM 43017] Length=330 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 64/141 (46%), Positives = 82/141 (59%), Gaps = 0/141 (0%) Query 159 VDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSD 218 VDLV+L+D +V P ++ +L PHL RVR+G G+VGPLVVPG +SC CADLHR+ Sbjct 181 VDLVILTDAVVPAPEVLTELVAAGTPHLITRVREGIGIVGPLVVPGRSSCARCADLHRTG 240 Query 219 RDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLE 278 D+ WP IA+QL AD ++ TAAL QV + A+ PP N TLE Sbjct 241 FDSCWPRIASQLAGRYHQADLTSVHGTAALTTGQVLATLTALSASTPDAAPPPTWNATLE 300 Query 279 FDLNAGSIVARQWTRHPRCFC 299 + G + RQW HPRC C Sbjct 301 LNCVTGVVRRRQWPPHPRCSC 321 >gi|300783167|ref|YP_003763458.1| hypothetical protein AMED_1241 [Amycolatopsis mediterranei U32] gi|299792681|gb|ADJ43056.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340524547|gb|AEK39752.1| hypothetical protein RAM_06300 [Amycolatopsis mediterranei S699] Length=348 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 65/140 (47%), Positives = 86/140 (62%), Gaps = 6/140 (4%) Query 160 DLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDR 219 DL +L+D +V P +V +L + +PHL RVRDGTG+VGPLVVPG +SCL CADLHR+D Sbjct 206 DLALLTDAVVPAPELVAELMGDGIPHLAARVRDGTGIVGPLVVPGRSSCLRCADLHRTDL 265 Query 220 DAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEF 279 D WP +A QL D + + A+LA++Q R+++ + P PP+ N TLE Sbjct 266 DPCWPRVAGQLAGRHQRPDLGAVQSCASLAVAQAMRLLSP-----SAPAPPT-WNATLEI 319 Query 280 DLNAGSIVARQWTRHPRCFC 299 D G I R W HPRC C Sbjct 320 DAFDGRIRHRGWPPHPRCRC 339 >gi|302524550|ref|ZP_07276892.1| predicted protein [Streptomyces sp. AA4] gi|302433445|gb|EFL05261.1| predicted protein [Streptomyces sp. AA4] Length=394 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 63/140 (45%), Positives = 83/140 (60%), Gaps = 6/140 (4%) Query 160 DLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDR 219 DLV+L+D LV P V +L HLPVRV +GTG+VGPLVVPG ++CL C DLHR+D Sbjct 240 DLVLLTDTLVPPPEEVAELVDSATSHLPVRVCEGTGIVGPLVVPGRSACLRCCDLHRTDA 299 Query 220 DAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEF 279 D +WP IA QL + AD + A A+LA++Q R+++ + PP N LE Sbjct 300 DLSWPRIATQLVGRIPRADLGAVHACASLAVAQAMRLLS------PSETPPPTWNAALEI 353 Query 280 DLNAGSIVARQWTRHPRCFC 299 D G + R+W HP C C Sbjct 354 DNFDGKVHRRRWEPHPDCGC 373 >gi|296140730|ref|YP_003647973.1| hypothetical protein Tpau_3041 [Tsukamurella paurometabola DSM 20162] gi|296028864|gb|ADG79634.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=298 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 106/295 (36%), Positives = 154/295 (53%), Gaps = 31/295 (10%) Query 22 LNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAE 81 L+P + +++RP VQ+G A ++RPP L A LLR ++ +E+ R+AA+ Sbjct 7 LDPHLTLVVRPPTLVQLGASATGAPVLRPPPWLAPDSAAGLLRWLQRFRTASEVHRRAAD 66 Query 82 RGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVH--GRGPLSD-LLVQALR 138 GL DGD +A L++ L G + L++ A+S+RVH GRG ++D +L + Sbjct 67 AGLTDGD-VAELLSVLRGFDL---------LETELAASSLRVHLHGRGHVTDAVLNEVAD 116 Query 139 CSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVG 198 G ++ + + +DLV+L+D L DP +VR L RVPHLPV VRDG G++G Sbjct 117 LDGVQVTAGTSRSWSPEGRDLDLVLLTDVLSPDPVLVRRLMRARVPHLPVVVRDGAGVIG 176 Query 199 PLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIA 258 PLV+PG + CL C D R+D D WP++A QL G A L TAA+A QV + Sbjct 177 PLVLPGASPCLRCLDRTRTDADPGWPSLACQLFGRSGRASSQVLRMTAAVAALQVQAI-- 234 Query 259 AVRGQE--------------ATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 A RG A + P+ L TLE + I R+W +P C C Sbjct 235 ARRGPGASGSGSGDDGAEFGARSDDPAVLGCTLEVE--GCGIAVRRWLMNPACGC 287 >gi|296394541|ref|YP_003659425.1| hypothetical protein Srot_2141 [Segniliparus rotundus DSM 44985] gi|296181688|gb|ADG98594.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=341 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 88/283 (32%), Positives = 128/283 (46%), Gaps = 11/283 (3%) Query 17 SALYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQ 76 + L L + R DG++QVG R + +RPP L LL + + +L+ Sbjct 27 AGLLRLRTGVTAFPRADGSIQVGCSERSGLRLRPPSSLDQRSCLKLLSLLEAGRTAAQLR 86 Query 77 RQAAERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQA 136 A + G + A LVA + AG+ + A + VHG GPL+ L A Sbjct 87 GAAKQEG-AEPKAAEELVAHVRIAGLLA-------AADEEKPARVHVHGSGPLATGLRSA 138 Query 137 LRCSGARIRHSSQP--HAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGT 194 L GA + + + + +LVVL+D + DP +V L PHL VR+ DG Sbjct 139 LEEGGALVTATCEAPLRGGIPEHNPELVVLTDRVAPDPAVVHQLLVASAPHLRVRLVDGC 198 Query 195 GMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVN 254 G +GPLV+PG TSCL C H SD D WP + QL G A+ + A A A +++ Sbjct 199 GQIGPLVLPGRTSCLWCEQHHASDADPLWPELLRQLGAAAGRAEIKVVRAALAQATVEID 258 Query 255 RVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRC 297 + +R + PP AL +E + R+ HPRC Sbjct 259 HTMRFLRSRRPV-PPPRALGGVVELRHDGLLSPPRKAPAHPRC 300 >gi|317508130|ref|ZP_07965813.1| hypothetical protein HMPREF9336_02185 [Segniliparus rugosus ATCC BAA-974] gi|316253541|gb|EFV12928.1| hypothetical protein HMPREF9336_02185 [Segniliparus rugosus ATCC BAA-974] Length=283 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 84/267 (32%), Positives = 124/267 (47%), Gaps = 20/267 (7%) Query 38 VGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAAERGL--VDGDAMANLV- 94 +G RR++ +RPP L TG LL + + +L+ A RG DA+ LV Sbjct 1 MGCSERRSLRLRPPDSLDQTGCLTLLSLLEAGQTAAQLRDAAKLRGARPEAADALVRLVQ 60 Query 95 -AQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCSGARIRHSSQP--H 151 A L+ P A I VHG GPL+ L ALR +GAR+ + + H Sbjct 61 TADLLAPKEQAP-------------ARIHVHGSGPLATGLQNALREAGARVTATRETPLH 107 Query 152 AAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGC 211 V +L VL+D + DP +V L ++PHL VR+ DG G +GPLV+PG T CL C Sbjct 108 RDVPEHKPELAVLTDRIAPDPAIVHQLLVAKIPHLRVRLVDGDGHIGPLVLPGRTGCLWC 167 Query 212 ADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEATPEPPS 271 H +D D + +L G A+ + A A A +++ + +RG + P Sbjct 168 EQQHAADADPFRSELLRRLGSCSGRAEPRVVRAVLAQAAVEIDHALQFLRGTGQS-SAPR 226 Query 272 ALNTTLEFDLNAGSIVARQWTRHPRCF 298 AL + +E + + R + HP C Sbjct 227 ALGSVVEIRHDGMLVPPRPQSSHPNCL 253 >gi|296169040|ref|ZP_06850702.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896299|gb|EFG75958.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=81 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/68 (83%), Positives = 62/68 (92%), Gaps = 0/68 (0%) Query 19 LYSLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQ 78 LY+L+PAMPVLLRPDGAVQVGWDPRRAVLVRPP GL A LAALLRSMRSP+P+ ELQR+ Sbjct 11 LYALDPAMPVLLRPDGAVQVGWDPRRAVLVRPPGGLAAAELAALLRSMRSPMPLPELQRR 70 Query 79 AAERGLVD 86 AA+RGL D Sbjct 71 AADRGLRD 78 >gi|331694984|ref|YP_004331223.1| hypothetical protein Psed_1119 [Pseudonocardia dioxanivorans CB1190] gi|326949673|gb|AEA23370.1| hypothetical protein Psed_1119 [Pseudonocardia dioxanivorans CB1190] Length=346 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/140 (44%), Positives = 80/140 (58%), Gaps = 6/140 (4%) Query 160 DLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDR 219 DLVVL+D ADP VRDL HL VR RDG G+VGPLV+PG ++CL C D HR+ R Sbjct 181 DLVVLADAAGADPLTVRDLVARGTTHLQVRTRDGRGVVGPLVLPGRSACLECLDRHRAAR 240 Query 220 DAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEF 279 + W +AA + G AD A ++AT +A +QV V+ R PP+ L+ T+E Sbjct 241 EPGWAGVAAGIARVRGTADAAAVVATIGVATAQVLAVVDGAR------VPPATLDATVEI 294 Query 280 DLNAGSIVARQWTRHPRCFC 299 D R+W+RH C C Sbjct 295 DAATARTTRRRWSRHQECPC 314 >gi|256375080|ref|YP_003098740.1| UBA/THIF-type NAD/FAD binding protein [Actinosynnema mirum DSM 43827] gi|255919383|gb|ACU34894.1| UBA/THIF-type NAD/FAD binding protein [Actinosynnema mirum DSM 43827] Length=368 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/140 (42%), Positives = 78/140 (56%), Gaps = 3/140 (2%) Query 160 DLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDR 219 DLVVL+D LV P ++ L E PHL R R+G G+VGPLVVPG +SC+ C DL +++ Sbjct 217 DLVVLADALVPPPEVLHALLLEGTPHLVARAREGLGLVGPLVVPGRSSCVRCGDLRKAEE 276 Query 220 DAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEF 279 D WP + AQL D +AD AT T A A + + A+ +E T P + LE Sbjct 277 DGDWPDLLAQLVDRPQLADLAT---TEATAGVAAAQALLALDEEELTSGRPPTWDHVLEV 333 Query 280 DLNAGSIVARQWTRHPRCFC 299 D G++ HPRC+C Sbjct 334 DAYGGALTRVPAPPHPRCYC 353 >gi|88856792|ref|ZP_01131446.1| hypothetical protein A20C1_13296 [marine actinobacterium PHSC20C1] gi|88813960|gb|EAR23828.1| hypothetical protein A20C1_13296 [marine actinobacterium PHSC20C1] Length=296 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/279 (30%), Positives = 126/279 (46%), Gaps = 20/279 (7%) Query 22 LNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSM-RSPIPITELQRQAA 80 ++P +P++ R + Q G DP AV++R L+AL+ + RS + + L R Sbjct 5 VDPRLPLVWRSPTSAQFGIDPP-AVVLRHVTENQEKILSALVSGISRSGLGM--LSRSHP 61 Query 81 ERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCS 140 E DA++ ++ VATP P +A + V G G L++ + + L S Sbjct 62 EECDDLLDALSRVL-------VATPPQAP--------SAHVAVLGSGSLAESIARTLAAS 106 Query 141 GARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPL 200 GA + + P DL +L + V P + VPHL V + D +GP+ Sbjct 107 GASVSVAEHAEELANP-DPDLAILVGHFVIAPSVHSHWLRRDVPHLSVVISDSGAEIGPV 165 Query 201 VVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAV 260 V PG+T CL C +LHR D D+AWPAIA QL A+ L+A AA S++ Sbjct 166 VTPGITGCLLCVELHRRDADSAWPAIATQLIGRSSHAETPVLIAEAAAEASRMALHRLGR 225 Query 261 RGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 G + P+ +++ D G RHP C C Sbjct 226 AGYTVYDQTPADATSSVRIDFATGRRDESLRFRHPECGC 264 >gi|284992606|ref|YP_003411160.1| UBA/ThiF-type NAD/FAD binding protein [Geodermatophilus obscurus DSM 43160] gi|284065851|gb|ADB76789.1| UBA/ThiF-type NAD/FAD binding protein [Geodermatophilus obscurus DSM 43160] Length=390 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/148 (46%), Positives = 79/148 (54%), Gaps = 11/148 (7%) Query 156 PAG--VDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCAD 213 PAG DLVVL+ A + DL V HL VR TG+VGPLVVPG TSCL CAD Sbjct 207 PAGSAADLVVLTRTWAASDPLAGDLQRRGVRHLVATVRGETGVVGPLVVPGATSCLRCAD 266 Query 214 LHRSDRDAAWPAIAAQLRDTVGVADRATL--LATAALALSQVNRVIAAVRGQEATPEPPS 271 LHR D D WPA+AAQL AT+ LATA A Q V+A + G A P+ Sbjct 267 LHRRDADPRWPALAAQLTSGEAPPGGATVTCLATAVTAAVQ---VLAVLDGAGA----PA 319 Query 272 ALNTTLEFDLNAGSIVARQWTRHPRCFC 299 +L TT+E R+W HP C C Sbjct 320 SLGTTVELRPPDLLPRTRRWPAHPDCGC 347 >gi|296270919|ref|YP_003653551.1| UBA/THIF-type NAD/FAD binding protein [Thermobispora bispora DSM 43833] gi|296093706|gb|ADG89658.1| UBA/THIF-type NAD/FAD binding protein [Thermobispora bispora DSM 43833] Length=354 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/143 (40%), Positives = 71/143 (50%), Gaps = 14/143 (9%) Query 160 DLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDR 219 DLVVL+ DP ++R+L E +PHL V +G G VGP V+PGVT CL C +L R DR Sbjct 211 DLVVLAPVGPLDPALIRELGEEGIPHLLVTAYEGRGSVGPFVLPGVTPCLVCLELTRRDR 270 Query 220 DAAWPAIAAQLRDTVG---VADRATLLATAALALSQVNRVIAAVRGQEATPEPPSALNTT 276 D WP + A+L G D A AA A+ QV A + S + T Sbjct 271 DPGWPMVGARLGGYPGGEIACDTALATLVAAEAVIQVL----------AYLDRSSVMKGT 320 Query 277 LEFDLNAGSIVARQWTRHPRCFC 299 L+ L G R W HP+C C Sbjct 321 LDV-LPDGHWRHRTWDVHPQCAC 342 >gi|258651821|ref|YP_003200977.1| hypothetical protein Namu_1593 [Nakamurella multipartita DSM 44233] gi|258555046|gb|ACV77988.1| hypothetical protein Namu_1593 [Nakamurella multipartita DSM 44233] Length=361 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/223 (35%), Positives = 109/223 (49%), Gaps = 28/223 (12%) Query 84 LVDGD-AMANLVAQLVGA-GVATPLANP----GNLDSRRRAASIRVHGRGPLSDLLVQAL 137 +V GD A A LVA LV A GV +P + D+R R A+ +AL Sbjct 156 VVHGDCAAATLVATLVAAAGVGHVHHDPSPPGADPDARPRPAA---------GSTATRAL 206 Query 138 RCSGARIRHSSQPHAAVTPAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMV 197 R + +R + +P A +P LVVL V D L +R+PHL V + +V Sbjct 207 RAANPLVR-THRPAAHQSPT---LVVLVGEQVPDLVRAAILVHQRIPHLAVLTQAARALV 262 Query 198 GPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQL-RDTVGVADRATLLATAALALSQVNRV 256 GPLV+PG +SCLGC + HR+D D WPA+A QL R T RA + +A A + + Sbjct 263 GPLVLPGRSSCLGCVNRHRADADPGWPAVAGQLSRQT----PRAPVTISAMAACLAIGQT 318 Query 257 IAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 + + G P+ +N ++E+ +A + R W HP C C Sbjct 319 LELIDGTGV----PTTVNGSVEWTPDALAPRRRTWPEHPDCGC 357 >gi|229821373|ref|YP_002882899.1| hypothetical protein Bcav_2892 [Beutenbergia cavernae DSM 12333] gi|229567286|gb|ACQ81137.1| hypothetical protein Bcav_2892 [Beutenbergia cavernae DSM 12333] Length=440 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 70/140 (50%), Gaps = 7/140 (5%) Query 160 DLVVLSDYLVADPHMVRDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDR 219 D+ VL VA P L E V H+ V R+ +VGP V PG T+CL C DLHR+DR Sbjct 194 DVAVLVSSGVAHPWRAAALMREDVTHVSVLSRELDVVVGPFVEPGRTACLRCVDLHRTDR 253 Query 220 DAAWPAIAAQLRDTVGVADRATLLATAALALSQVNRVIAAVRGQEATPEPPSALNTTLEF 279 DA WP +A QL V + L AA L V V+A + G+ P+ + TT+E Sbjct 254 DARWPVVATQLAGDDPVEPESVTLHLAASLL--VRDVLAELDGRV-----PATVATTIEV 306 Query 280 DLNAGSIVARQWTRHPRCFC 299 D R W HPRC C Sbjct 307 DPFTPFGRIRTWETHPRCGC 326 >gi|170782256|ref|YP_001710589.1| hypothetical protein CMS_1890 [Clavibacter michiganensis subsp. sepedonicus] gi|169156825|emb|CAQ01992.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length=319 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 101/308 (33%), Positives = 133/308 (44%), Gaps = 40/308 (12%) Query 8 PSQVMRRAASALYS--LNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGL--AALL 63 P+ RRA SA + L+P +P++ R ++Q+G D RPP L+A LL Sbjct 5 PASRARRAISAPMAIRLDPRLPLVWRTPDSLQLGVD-------RPPVVLSAVSRLDERLL 57 Query 64 RSMRSPIPITELQRQAAERGLVDGDAMANLVAQLVGAGVATPL--ANPGNLDS----RRR 117 ++ I L AA G G A + LV + P +P LD+ R R Sbjct 58 DALVHGISRGGLDMIAATEGA--GPAHVTQLLDLVRPALLPPRDGGSPSGLDATTTRRAR 115 Query 118 AASIRVHGRGPLSDLLVQALRCSGARIRHSSQPHAAVTPAG--VDLVVLSDYLVADPHMV 175 + V G G +D + AL AR H P A L V+ + P + Sbjct 116 TGPVAVVGGGATADRIADAL----ARAGHDVAPRRMADDADPRTALAVIVAHFAIAPAVY 171 Query 176 RDLHTERVPHLPVRVRDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQL--RDT 233 E VPHLPV + D +VGPLV PG T C C DL R D D AWPAIA QL RD+ Sbjct 172 GRWSREDVPHLPVVLGDRHAVVGPLVEPGRTVCCYCLDLGRRDADPAWPAIATQLLGRDS 231 Query 234 VGVADRATLLAT--AALALSQVNRVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQW 291 A L+ T AALA +R++ AT + D+ +G I R Sbjct 232 ---GSEAGLVPTELAALAARPADRLLTTGENALATHQ--------AVLDVRSGRITRRAS 280 Query 292 TRHPRCFC 299 HPRC C Sbjct 281 RPHPRCGC 288 >gi|152965151|ref|YP_001360935.1| hypothetical protein Krad_1183 [Kineococcus radiotolerans SRS30216] gi|151359668|gb|ABS02671.1| hypothetical protein Krad_1183 [Kineococcus radiotolerans SRS30216] Length=275 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 93/290 (33%), Positives = 126/290 (44%), Gaps = 43/290 (14%) Query 21 SLNPAMPVLLRPDGAVQVGWDPRRAVLVRPPRGLTATGLAALLRSMRSPIPITELQRQAA 80 +L A+PV+ RPDG QVG PR AV++R P + P R A Sbjct 12 ALPSAVPVVARPDGRFQVGSAPRSAVVLRTPPVVAG--------------PWGGPGRPA- 56 Query 81 ERGLVDGDAMANLVAQLVGAGVATPLANPGNLDSRRRAASIRVHGRGPLSDLLVQALRCS 140 G +G A + V G +P + R A + V G +D+L+Q L + Sbjct 57 HPGAEEGRAWS--VYDRSGP-------DPAERMALRAQAGVAVVGSPRTADVLLQLLADA 107 Query 141 GARIRHSSQPHAAVT----------PAGVDLVVLSDYLVADPHMVRDLHTERVPHLPVRV 190 G +P A P D+VVL D A P + L + V HL V + Sbjct 108 GVGRLLCERPQAVPAGTRTAGRPGDPGAADVVVLLDEHSARPVLADGLVADGVAHLSVVL 167 Query 191 RDGTGMVGPLVVPGVTSCLGCADLHRSDRDAAWPAIAAQLRDTVGVADRATLLATAALAL 250 RD +VGP+V+PG ++CL C D R+D D WPA+ L T A R T ATAA Sbjct 168 RDTDALVGPMVLPGRSACLRCVDRWRTDADPVWPAVRDALSRT---APRPTDAATAATVA 224 Query 251 SQVN-RVIAAVRGQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 +V++ + G P+AL TLE L G + R W HP C C Sbjct 225 GVAALQVLSHLDGAL-----PAALGCTLELLLPEGRVRRRGWGPHPGCGC 269 >gi|288922530|ref|ZP_06416712.1| UBA/THIF-type NAD/FAD binding protein [Frankia sp. EUN1f] gi|288346119|gb|EFC80466.1| UBA/THIF-type NAD/FAD binding protein [Frankia sp. EUN1f] Length=396 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/158 (42%), Positives = 81/158 (52%), Gaps = 13/158 (8%) Query 152 AAVTPAGVDLVVLSDYLVADPHMVRDLHTER--VPHLPVRVRDGTGMVGPLVVPGVTSCL 209 A V P DLV+L+ + H L ER VPHL VR+ TG++GPL+VPGVTSCL Sbjct 206 ANVEPLRPDLVLLAPVGLPVVHPDECLRLERAGVPHLLAGVRETTGIIGPLIVPGVTSCL 265 Query 210 GCADLHRSDRDAAWPAIAAQL-RDTVGVAD-----RATLLA--TAALALSQVNRVIAAVR 261 C LHR RD+ W +A Q+ R AD ATL+A TA AL ++ AA Sbjct 266 HCQHLHRDARDSDWLILAMQMIRPPEHGADPCEISLATLVAAITAMQALDFLDLTTAA-- 323 Query 262 GQEATPEPPSALNTTLEFDLNAGSIVARQWTRHPRCFC 299 + + P+A N TLE I R W HP C C Sbjct 324 -SDRPRQLPTAANGTLEIARTDLRIRRRTWPLHPECPC 360 Lambda K H 0.321 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 502027544144 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40