BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3197A Length=92 Score E Sequences producing significant alignments: (Bits) Value gi|15842781|ref|NP_337818.1| hypothetical protein MT3290.1 [Myco... 186 8e-46 gi|31794373|ref|NP_856866.1| transcriptional regulatory protein ... 185 2e-45 gi|289448879|ref|ZP_06438623.1| transcriptional regulator whib-l... 172 2e-41 gi|308370184|ref|ZP_07420578.2| transcriptional regulator whib-l... 159 9e-38 gi|183981388|ref|YP_001849679.1| transcriptional regulatory prot... 139 1e-31 gi|296169036|ref|ZP_06850698.1| transcription factor WhiB [Mycob... 139 2e-31 gi|118617993|ref|YP_906325.1| transcriptional regulatory protein... 138 3e-31 gi|254821700|ref|ZP_05226701.1| transcription factor WhiB [Mycob... 130 7e-29 gi|118466451|ref|YP_883290.1| transcription factor WhiB [Mycobac... 129 2e-28 gi|289444767|ref|ZP_06434511.1| transcriptional regulator whib-l... 128 2e-28 gi|41409394|ref|NP_962230.1| hypothetical protein MAP3296c [Myco... 126 1e-27 gi|15827265|ref|NP_301528.1| transcriptional regulator [Mycobact... 125 3e-27 gi|240169963|ref|ZP_04748622.1| transcriptional regulatory prote... 122 1e-26 gi|342861151|ref|ZP_08717800.1| transcription factor WhiB [Mycob... 116 1e-24 gi|333921399|ref|YP_004494980.1| transcriptional regulator Whib-... 111 3e-23 gi|108798381|ref|YP_638578.1| transcription factor WhiB [Mycobac... 110 9e-23 gi|118470605|ref|YP_886319.1| transcription factor WhiB [Mycobac... 107 4e-22 gi|326328586|ref|ZP_08194926.1| transcription factor WhiB [Nocar... 104 4e-21 gi|296394543|ref|YP_003659427.1| transcription factor WhiB [Segn... 103 7e-21 gi|289571418|ref|ZP_06451645.1| transcriptional regulator whib-l... 103 8e-21 gi|169630589|ref|YP_001704238.1| putative transcriptional regula... 103 1e-20 gi|54026505|ref|YP_120747.1| putative transcriptional regulator ... 101 4e-20 gi|315445533|ref|YP_004078412.1| transcription factor WhiB-like ... 100 7e-20 gi|226365853|ref|YP_002783636.1| WhiB family regulatory protein ... 99.8 1e-19 gi|111023346|ref|YP_706318.1| hypothetical protein RHA1_ro06383 ... 99.4 1e-19 gi|296140733|ref|YP_003647976.1| transcription factor WhiB [Tsuk... 99.4 2e-19 gi|325674615|ref|ZP_08154302.1| transcription regulator WhiB [Rh... 99.0 2e-19 gi|145225237|ref|YP_001135915.1| transcription factor WhiB [Myco... 98.2 4e-19 gi|312140611|ref|YP_004007947.1| whib-like transcriptional regul... 97.8 4e-19 gi|226305712|ref|YP_002765672.1| WhiB family regulatory protein ... 97.4 6e-19 gi|120402808|ref|YP_952637.1| transcription factor WhiB [Mycobac... 97.1 9e-19 gi|332669687|ref|YP_004452695.1| transcription factor WhiB [Cell... 96.3 1e-18 gi|302869732|ref|YP_003838369.1| transcription factor WhiB [Micr... 95.9 2e-18 gi|330469970|ref|YP_004407713.1| transcription factor whib [Verr... 95.5 2e-18 gi|159039646|ref|YP_001538899.1| transcription factor WhiB [Sali... 94.4 5e-18 gi|238060917|ref|ZP_04605626.1| transcription factor WhiB [Micro... 94.4 5e-18 gi|84494602|ref|ZP_00993721.1| putative WhiB-family transcriptio... 94.0 7e-18 gi|343927583|ref|ZP_08767051.1| putative WhiB family regulatory ... 94.0 7e-18 gi|256375075|ref|YP_003098735.1| transcription factor WhiB [Acti... 94.0 7e-18 gi|117928977|ref|YP_873528.1| transcription factor WhiB [Acidoth... 93.2 1e-17 gi|258651815|ref|YP_003200971.1| transcription factor WhiB [Naka... 93.2 1e-17 gi|269796035|ref|YP_003315490.1| Transcription factor WhiB-like ... 92.8 2e-17 gi|333991551|ref|YP_004524165.1| transcriptional regulator [Myco... 92.8 2e-17 gi|145596249|ref|YP_001160546.1| transcription factor WhiB [Sali... 92.4 2e-17 gi|302524543|ref|ZP_07276885.1| WhiB-family transcriptional regu... 92.0 2e-17 gi|262203371|ref|YP_003274579.1| transcription factor WhiB [Gord... 91.7 3e-17 gi|257068322|ref|YP_003154577.1| transcription factor WhiB-like ... 91.7 3e-17 gi|324999586|ref|ZP_08120698.1| WhiB family transcriptional regu... 91.7 3e-17 gi|291301846|ref|YP_003513124.1| transcription factor WhiB [Stac... 90.5 7e-17 gi|134097689|ref|YP_001103350.1| WhiB-family transcriptional reg... 90.5 8e-17 >gi|15842781|ref|NP_337818.1| hypothetical protein MT3290.1 [Mycobacterium tuberculosis CDC1551] gi|167968310|ref|ZP_02550587.1| hypothetical protein MtubH3_09874 [Mycobacterium tuberculosis H37Ra] gi|254552292|ref|ZP_05142739.1| hypothetical protein Mtube_17878 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] 6 more sequence titles Length=96 Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 92/92 (100%), Positives = 92/92 (100%), Gaps = 0/92 (0%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA Sbjct 5 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 64 Query 61 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDAVA 92 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDAVA Sbjct 65 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDAVA 96 >gi|31794373|ref|NP_856866.1| transcriptional regulatory protein WHIB-like WHIB7 [Mycobacterium bovis AF2122/97] gi|57117070|ref|YP_177940.1| transcriptional regulatory protein WHIB-like WHIB7 [Mycobacterium tuberculosis H37Rv] gi|121639081|ref|YP_979305.1| putative transcriptional regulatory protein whiB-like whiB7 [Mycobacterium bovis BCG str. Pasteur 1173P2] 50 more sequence titles Length=92 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/92 (99%), Positives = 92/92 (100%), Gaps = 0/92 (0%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +SVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA Sbjct 1 MSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 Query 61 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDAVA 92 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDAVA Sbjct 61 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDAVA 92 >gi|289448879|ref|ZP_06438623.1| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis CPHL_A] gi|289421837|gb|EFD19038.1| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis CPHL_A] Length=124 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/86 (97%), Positives = 84/86 (98%), Gaps = 0/86 (0%) Query 7 PRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVW 66 P+ PRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVW Sbjct 39 PQTDPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVW 98 Query 67 GGEIFDQGSIVSHKRPRGRPRKDAVA 92 GGEIFDQGSIVSHKRPRGRPRKDAVA Sbjct 99 GGEIFDQGSIVSHKRPRGRPRKDAVA 124 >gi|308370184|ref|ZP_07420578.2| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis SUMu002] gi|308371267|ref|ZP_07424385.2| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis SUMu003] gi|308374803|ref|ZP_07437455.2| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis SUMu006] 7 more sequence titles Length=78 Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 77/78 (99%), Positives = 78/78 (100%), Gaps = 0/78 (0%) Query 15 LPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQG 74 +PVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQG Sbjct 1 MPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQG 60 Query 75 SIVSHKRPRGRPRKDAVA 92 SIVSHKRPRGRPRKDAVA Sbjct 61 SIVSHKRPRGRPRKDAVA 78 >gi|183981388|ref|YP_001849679.1| transcriptional regulatory protein Whib-like WhiB7 [Mycobacterium marinum M] gi|183174714|gb|ACC39824.1| transcriptional regulatory protein Whib-like WhiB7 [Mycobacterium marinum M] Length=91 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/90 (78%), Positives = 77/90 (86%), Gaps = 4/90 (4%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +S LTVPRQT LPVLPCHVG+PDLWFA+TPA LE AK LC SCPIR QCLAAAL+RA Sbjct 5 MSALTVPRQT----LPVLPCHVGNPDLWFAETPADLEQAKELCASCPIRPQCLAAALERA 60 Query 61 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDA 90 EPWGVWGGEIF++GSIV+ KRPRGRP K A Sbjct 61 EPWGVWGGEIFERGSIVNRKRPRGRPPKVA 90 >gi|296169036|ref|ZP_06850698.1| transcription factor WhiB [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896295|gb|EFG75954.1| transcription factor WhiB [Mycobacterium parascrofulaceum ATCC BAA-614] Length=90 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/92 (75%), Positives = 74/92 (81%), Gaps = 3/92 (3%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +S LTV RQ PVLPCH GDPDLWFAD PA LE AK LC CPIRRQCLA+AL+RA Sbjct 1 MSALTVSRQPSS---PVLPCHAGDPDLWFADIPADLERAKALCAGCPIRRQCLASALERA 57 Query 61 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDAVA 92 EPWGVWGGEI D+GSI+S KRPRGRPRKD VA Sbjct 58 EPWGVWGGEILDRGSILSFKRPRGRPRKDGVA 89 >gi|118617993|ref|YP_906325.1| transcriptional regulatory protein Whib-like WhiB7 [Mycobacterium ulcerans Agy99] gi|118570103|gb|ABL04854.1| transcriptional regulatory protein Whib-like WhiB7 [Mycobacterium ulcerans Agy99] Length=87 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 69/90 (77%), Positives = 76/90 (85%), Gaps = 4/90 (4%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +S LTVPRQT LPVLPCHVG+PDLWFA+TPA LE AK C SCPIR QCLAAAL+RA Sbjct 1 MSALTVPRQT----LPVLPCHVGNPDLWFAETPADLEQAKEFCASCPIRPQCLAAALERA 56 Query 61 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDA 90 EPWGVWGGEIF++GSIV+ KRPRGRP K A Sbjct 57 EPWGVWGGEIFERGSIVNRKRPRGRPPKVA 86 >gi|254821700|ref|ZP_05226701.1| transcription factor WhiB [Mycobacterium intracellulare ATCC 13950] Length=83 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 60/75 (80%), Positives = 67/75 (90%), Gaps = 0/75 (0%) Query 16 PVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGS 75 P LPCH GDPDLWFA+ PA LE AK+LCV CP+RRQCLAAAL+RAEPWGVWGGEIFD+GS Sbjct 9 PDLPCHAGDPDLWFAEAPADLERAKSLCVDCPVRRQCLAAALERAEPWGVWGGEIFDRGS 68 Query 76 IVSHKRPRGRPRKDA 90 ++S KRPRGRPRK A Sbjct 69 VLSFKRPRGRPRKAA 83 >gi|118466451|ref|YP_883290.1| transcription factor WhiB [Mycobacterium avium 104] gi|118167738|gb|ABK68635.1| transcription factor WhiB [Mycobacterium avium 104] Length=90 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/90 (69%), Positives = 70/90 (78%), Gaps = 7/90 (7%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +S TVPRQ LPCHVGDPDLWFA+ PA LE AK LC CP+RRQCLAAAL+RA Sbjct 1 MSAPTVPRQA-------LPCHVGDPDLWFAEAPADLERAKQLCAGCPVRRQCLAAALERA 53 Query 61 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDA 90 EPWGVWGGEI D+G+++ KRPRGRPRKD Sbjct 54 EPWGVWGGEILDRGAVLGFKRPRGRPRKDG 83 >gi|289444767|ref|ZP_06434511.1| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis T46] gi|289751882|ref|ZP_06511260.1| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis T92] gi|289417686|gb|EFD14926.1| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis T46] gi|289692469|gb|EFD59898.1| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis T92] Length=76 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/64 (97%), Positives = 63/64 (99%), Gaps = 0/64 (0%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +SVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA Sbjct 1 MSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 Query 61 EPWG 64 EPW Sbjct 61 EPWA 64 >gi|41409394|ref|NP_962230.1| hypothetical protein MAP3296c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398225|gb|AAS05846.1| hypothetical protein MAP_3296c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459537|gb|EGO38474.1| Transcription factor WhiB [Mycobacterium avium subsp. paratuberculosis S397] Length=90 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 61/90 (68%), Positives = 69/90 (77%), Gaps = 7/90 (7%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +S TV RQ LPCHVGDPDLWFA+ PA LE AK LC CP+RRQCLAAAL+RA Sbjct 1 MSAPTVSRQA-------LPCHVGDPDLWFAEAPADLERAKQLCAGCPVRRQCLAAALERA 53 Query 61 EPWGVWGGEIFDQGSIVSHKRPRGRPRKDA 90 EPWGVWGGEI D+G+++ KRPRGRPRKD Sbjct 54 EPWGVWGGEILDRGAVLGFKRPRGRPRKDG 83 >gi|15827265|ref|NP_301528.1| transcriptional regulator [Mycobacterium leprae TN] gi|221229743|ref|YP_002503159.1| putative transcriptional regulator [Mycobacterium leprae Br4923] gi|466985|gb|AAA17171.1| B1937_F2_68 [Mycobacterium leprae] gi|13092814|emb|CAC30148.1| putative transcriptional regulator [Mycobacterium leprae] gi|219932850|emb|CAR70733.1| putative transcriptional regulator [Mycobacterium leprae Br4923] Length=89 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 61/89 (69%), Positives = 68/89 (77%), Gaps = 4/89 (4%) Query 3 VLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEP 62 LT+P+QT LP LPCH DLWFA+TPA LE KTLC +CPIRR CL AA++RAEP Sbjct 3 TLTIPKQT----LPGLPCHADTSDLWFAETPADLECTKTLCANCPIRRPCLEAAMERAEP 58 Query 63 WGVWGGEIFDQGSIVSHKRPRGRPRKDAV 91 WGVWGGEIFD+G IVS KRPRGRP D V Sbjct 59 WGVWGGEIFDRGLIVSRKRPRGRPCNDVV 87 >gi|240169963|ref|ZP_04748622.1| transcriptional regulatory protein Whib-like WhiB7 [Mycobacterium kansasii ATCC 12478] Length=91 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 58/78 (75%), Positives = 66/78 (85%), Gaps = 4/78 (5%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +S LTVP+ RLP LPCHVG+PDLWFADTPA LE AK LC CP+RRQCLAAAL+RA Sbjct 5 MSALTVPKN----RLPALPCHVGNPDLWFADTPADLERAKALCTGCPVRRQCLAAALERA 60 Query 61 EPWGVWGGEIFDQGSIVS 78 EPWGVWGGEIF++G+IVS Sbjct 61 EPWGVWGGEIFERGAIVS 78 >gi|342861151|ref|ZP_08717800.1| transcription factor WhiB [Mycobacterium colombiense CECT 3035] gi|342131595|gb|EGT84865.1| transcription factor WhiB [Mycobacterium colombiense CECT 3035] Length=90 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 57/79 (73%), Positives = 63/79 (80%), Gaps = 7/79 (8%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +S TVPRQ LPCHVGDPDLWFADTPA LE AKTLC CP+RRQCLAAAL+RA Sbjct 1 MSAPTVPRQA-------LPCHVGDPDLWFADTPADLERAKTLCAGCPVRRQCLAAALERA 53 Query 61 EPWGVWGGEIFDQGSIVSH 79 EPWGVWGGEI D+GS++S Sbjct 54 EPWGVWGGEIIDRGSVLSF 72 >gi|333921399|ref|YP_004494980.1| transcriptional regulator Whib-like WhiB7 [Amycolicicoccus subflavus DQS3-9A1] gi|333483620|gb|AEF42180.1| Transcriptional regulatory protein Whib-like WhiB7 [Amycolicicoccus subflavus DQS3-9A1] Length=103 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/76 (69%), Positives = 58/76 (77%), Gaps = 0/76 (0%) Query 13 QRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFD 72 RL LPC DPDLWFAD+PA LE AKTLC +CP+R +CL AL R EPWGVWGGEI D Sbjct 23 DRLRALPCRREDPDLWFADSPADLEYAKTLCAACPVRARCLELALDRQEPWGVWGGEILD 82 Query 73 QGSIVSHKRPRGRPRK 88 G+IV+ KRPRGRP K Sbjct 83 HGAIVARKRPRGRPPK 98 >gi|108798381|ref|YP_638578.1| transcription factor WhiB [Mycobacterium sp. MCS] gi|119867478|ref|YP_937430.1| transcription factor WhiB [Mycobacterium sp. KMS] gi|126434065|ref|YP_001069756.1| transcription factor WhiB [Mycobacterium sp. JLS] gi|108768800|gb|ABG07522.1| transcription factor WhiB [Mycobacterium sp. MCS] gi|119693567|gb|ABL90640.1| transcription factor WhiB [Mycobacterium sp. KMS] gi|126233865|gb|ABN97265.1| transcription factor WhiB [Mycobacterium sp. JLS] Length=92 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 48/64 (75%), Positives = 57/64 (90%), Gaps = 0/64 (0%) Query 15 LPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQG 74 LP LPCHVGDPDLWFA++P LE AKTLC CP+RR+CLAAAL+R EPWGVWGGEIF++G Sbjct 11 LPELPCHVGDPDLWFAESPGDLERAKTLCAECPVRRECLAAALERQEPWGVWGGEIFERG 70 Query 75 SIVS 78 +IV+ Sbjct 71 TIVA 74 >gi|118470605|ref|YP_886319.1| transcription factor WhiB [Mycobacterium smegmatis str. MC2 155] gi|118171892|gb|ABK72788.1| transcription factor WhiB [Mycobacterium smegmatis str. MC2 155] Length=103 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 49/70 (70%), Positives = 54/70 (78%), Gaps = 0/70 (0%) Query 9 QTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGG 68 T RLP +PCHVGDPDLWFA+ P LE AK LC CPIR QCL AAL+R EPWGVWGG Sbjct 15 MTCETRLPAVPCHVGDPDLWFAENPGDLERAKALCAGCPIRVQCLTAALERQEPWGVWGG 74 Query 69 EIFDQGSIVS 78 EI D+GSIV+ Sbjct 75 EILDRGSIVA 84 >gi|326328586|ref|ZP_08194926.1| transcription factor WhiB [Nocardioidaceae bacterium Broad-1] gi|325953547|gb|EGD45547.1| transcription factor WhiB [Nocardioidaceae bacterium Broad-1] Length=85 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 45/74 (61%), Positives = 58/74 (79%), Gaps = 0/74 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPCH D LWF+++PA LEVAK C+ CP+ R+CL+ AL R+EPWGVWGGEI ++G +V Sbjct 12 LPCHGDDSALWFSESPAALEVAKDRCLDCPVMRECLSGALARSEPWGVWGGEIVERGQVV 71 Query 78 SHKRPRGRPRKDAV 91 +HKR RGRPR+ A Sbjct 72 THKRGRGRPRRQAA 85 >gi|296394543|ref|YP_003659427.1| transcription factor WhiB [Segniliparus rotundus DSM 44985] gi|296181690|gb|ADG98596.1| transcription factor WhiB [Segniliparus rotundus DSM 44985] Length=98 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 48/74 (65%), Positives = 55/74 (75%), Gaps = 1/74 (1%) Query 16 PVLPCHVG-DPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQG 74 P LPC DPDLWFA+ PA LE AK C CP+R CLA AL+R EPWGVWGGEIF QG Sbjct 17 PGLPCQEALDPDLWFAEEPAALEFAKQSCGVCPVREACLAEALRRGEPWGVWGGEIFHQG 76 Query 75 SIVSHKRPRGRPRK 88 +++ KRPRGRP+K Sbjct 77 EVIARKRPRGRPKK 90 >gi|289571418|ref|ZP_06451645.1| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis T17] gi|289545172|gb|EFD48820.1| transcriptional regulator whib-like whiB7 [Mycobacterium tuberculosis T17] Length=62 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 48/50 (96%), Positives = 49/50 (98%), Gaps = 0/50 (0%) Query 15 LPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWG 64 +PVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPW Sbjct 1 MPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWA 50 >gi|169630589|ref|YP_001704238.1| putative transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169242556|emb|CAM63584.1| Putative transcriptional regulator [Mycobacterium abscessus] Length=94 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/61 (76%), Positives = 51/61 (84%), Gaps = 0/61 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPCHV D DLWFA++PA LE AK LC CPIR QCLAAAL RAEPWGVWGGEI +QG+IV Sbjct 13 LPCHVADADLWFAESPADLERAKALCADCPIRSQCLAAALDRAEPWGVWGGEILEQGTIV 72 Query 78 S 78 + Sbjct 73 A 73 >gi|54026505|ref|YP_120747.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54018013|dbj|BAD59383.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=101 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 49/79 (63%), Positives = 59/79 (75%), Gaps = 1/79 (1%) Query 1 VSVLTVPRQTP-RQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQR 59 V+ TV +TP R VLPC V DPDLWFA++P LE AK LC SCPIR+ CL+AA+ R Sbjct 8 VTCRTVAGKTPARDIATVLPCRVEDPDLWFAESPVQLEQAKALCASCPIRKGCLSAAIDR 67 Query 60 AEPWGVWGGEIFDQGSIVS 78 EPWGVWGGEIFDQG +++ Sbjct 68 REPWGVWGGEIFDQGVVIA 86 >gi|315445533|ref|YP_004078412.1| transcription factor WhiB-like protein [Mycobacterium sp. Spyr1] gi|315263836|gb|ADU00578.1| Transcription factor WhiB-like protein [Mycobacterium sp. Spyr1] Length=103 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 44/71 (62%), Positives = 54/71 (77%), Gaps = 0/71 (0%) Query 8 RQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWG 67 RQ R P +PCHV DPDLWFA+ P LE AKTLC CP++R CL AAL+R EPWGVWG Sbjct 15 RQPFETRQPAVPCHVEDPDLWFAEDPRDLERAKTLCADCPVQRACLNAALERQEPWGVWG 74 Query 68 GEIFDQGSIVS 78 GEI ++GS+++ Sbjct 75 GEILERGSVIA 85 >gi|226365853|ref|YP_002783636.1| WhiB family regulatory protein [Rhodococcus opacus B4] gi|226244343|dbj|BAH54691.1| putative WhiB family regulatory protein [Rhodococcus opacus B4] Length=113 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 44/61 (73%), Positives = 49/61 (81%), Gaps = 0/61 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC V DPDLWFAD+P LE AK LC SCPIR +CL AAL R EPWGVWGGEIFDQG ++ Sbjct 36 LPCRVDDPDLWFADSPTELEQAKALCASCPIRSRCLDAALDRGEPWGVWGGEIFDQGVVI 95 Query 78 S 78 + Sbjct 96 A 96 >gi|111023346|ref|YP_706318.1| hypothetical protein RHA1_ro06383 [Rhodococcus jostii RHA1] gi|110822876|gb|ABG98160.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=106 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 44/61 (73%), Positives = 49/61 (81%), Gaps = 0/61 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC V DPDLWFAD+P LE AK LC SCPIR +CL AAL R EPWGVWGGEIFDQG ++ Sbjct 29 LPCRVDDPDLWFADSPTELEQAKALCASCPIRSRCLDAALDRGEPWGVWGGEIFDQGVVI 88 Query 78 S 78 + Sbjct 89 A 89 >gi|296140733|ref|YP_003647976.1| transcription factor WhiB [Tsukamurella paurometabola DSM 20162] gi|296028867|gb|ADG79637.1| transcription factor WhiB [Tsukamurella paurometabola DSM 20162] Length=99 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 42/61 (69%), Positives = 53/61 (87%), Gaps = 0/61 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 +PC GDPDLWFA+TP+ LE AK LC +CP++R CLAAAL+RAEPWGVWGG+IFDQG ++ Sbjct 26 IPCRAGDPDLWFAETPSDLERAKQLCETCPLQRACLAAALERAEPWGVWGGQIFDQGVVI 85 Query 78 S 78 + Sbjct 86 A 86 >gi|325674615|ref|ZP_08154302.1| transcription regulator WhiB [Rhodococcus equi ATCC 33707] gi|325554201|gb|EGD23876.1| transcription regulator WhiB [Rhodococcus equi ATCC 33707] Length=107 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/76 (61%), Positives = 52/76 (69%), Gaps = 0/76 (0%) Query 17 VLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSI 76 PC GDPDLWF+ P LE AK C CPIR +CLA AL+RAEPWGVWGGEI +G + Sbjct 12 TTPCRTGDPDLWFSPAPDDLEQAKRQCGGCPIRSRCLAGALERAEPWGVWGGEILHRGVV 71 Query 77 VSHKRPRGRPRKDAVA 92 V+ KR RGRPR A Sbjct 72 VARKRSRGRPRAHVAA 87 >gi|145225237|ref|YP_001135915.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK] gi|145217723|gb|ABP47127.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK] Length=97 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 42/69 (61%), Positives = 52/69 (76%), Gaps = 0/69 (0%) Query 10 TPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGE 69 + R P +PCHV DPDLWFA+ P LE AK LC CP++R CL AAL+R EPWGVWGGE Sbjct 11 SSETRQPAVPCHVEDPDLWFAEDPRDLERAKALCADCPLQRACLNAALERQEPWGVWGGE 70 Query 70 IFDQGSIVS 78 I D+GS+++ Sbjct 71 ILDRGSVIA 79 >gi|312140611|ref|YP_004007947.1| whib-like transcriptional regulator [Rhodococcus equi 103S] gi|311889950|emb|CBH49267.1| WhiB-like transcriptional regulator [Rhodococcus equi 103S] Length=96 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 44/63 (70%), Positives = 51/63 (81%), Gaps = 0/63 (0%) Query 16 PVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGS 75 P LPC V +PDLWFA+TPA LE AK LC CP+R +CL AAL RAEPWGVWGGEIFDQG Sbjct 13 PELPCRVENPDLWFAETPADLERAKALCGQCPVRNRCLRAALDRAEPWGVWGGEIFDQGV 72 Query 76 IVS 78 +++ Sbjct 73 VIA 75 >gi|226305712|ref|YP_002765672.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4] gi|229490984|ref|ZP_04384817.1| transcription factor WhiB [Rhodococcus erythropolis SK121] gi|226184829|dbj|BAH32933.1| putative WhiB family regulatory protein [Rhodococcus erythropolis PR4] gi|229322100|gb|EEN87888.1| transcription factor WhiB [Rhodococcus erythropolis SK121] Length=107 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 41/61 (68%), Positives = 49/61 (81%), Gaps = 0/61 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC +PDLWFA+ PA LE AK LC CPIR +CL+AAL RAEPWGVWGGEI DQG+++ Sbjct 32 LPCRASNPDLWFAEAPAELEQAKALCAQCPIRSRCLSAALDRAEPWGVWGGEILDQGAVI 91 Query 78 S 78 + Sbjct 92 A 92 >gi|120402808|ref|YP_952637.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1] gi|119955626|gb|ABM12631.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1] Length=91 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 41/61 (68%), Positives = 50/61 (82%), Gaps = 0/61 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 +PCHV DPDLWFA+ P LE AK LC CP+RR+CL AALQR EPWGVWGGEI ++GS++ Sbjct 13 VPCHVEDPDLWFAEDPRDLERAKALCADCPLRRECLNAALQRQEPWGVWGGEILERGSVI 72 Query 78 S 78 + Sbjct 73 A 73 >gi|332669687|ref|YP_004452695.1| transcription factor WhiB [Cellulomonas fimi ATCC 484] gi|332338725|gb|AEE45308.1| transcription factor WhiB [Cellulomonas fimi ATCC 484] Length=116 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 44/74 (60%), Positives = 54/74 (73%), Gaps = 0/74 (0%) Query 17 VLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSI 76 ++PC DP+LWFA+ A +E AK LC CPI CLA AL+RAEPWGVWGG++F G + Sbjct 39 LIPCRTNDPELWFAEQTAVVERAKALCRECPIIEGCLAGALERAEPWGVWGGQVFIGGVV 98 Query 77 VSHKRPRGRPRKDA 90 V KR RGRPRK+A Sbjct 99 VPMKRGRGRPRKNA 112 >gi|302869732|ref|YP_003838369.1| transcription factor WhiB [Micromonospora aurantiaca ATCC 27029] gi|315503786|ref|YP_004082673.1| transcription factor whib [Micromonospora sp. L5] gi|302572591|gb|ADL48793.1| transcription factor WhiB [Micromonospora aurantiaca ATCC 27029] gi|315410405|gb|ADU08522.1| transcription factor WhiB [Micromonospora sp. L5] Length=121 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 40/60 (67%), Positives = 52/60 (87%), Gaps = 0/60 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC DPDLWF+D+PA LE+AK+LC CP+R +CLA A++RAEPWGVWGGEIF++G++V Sbjct 18 LPCRKFDPDLWFSDSPAELELAKSLCGDCPLRVECLAGAVERAEPWGVWGGEIFERGAVV 77 >gi|330469970|ref|YP_004407713.1| transcription factor whib [Verrucosispora maris AB-18-032] gi|328812941|gb|AEB47113.1| transcription factor whib [Verrucosispora maris AB-18-032] Length=121 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 40/60 (67%), Positives = 51/60 (85%), Gaps = 0/60 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC DPDLWF+D+P L+VAKTLC CP+R +CLA A++RAEPWGVWGGEIF++G++V Sbjct 18 LPCRKFDPDLWFSDSPTDLDVAKTLCGDCPLRVECLAGAVERAEPWGVWGGEIFERGAVV 77 >gi|159039646|ref|YP_001538899.1| transcription factor WhiB [Salinispora arenicola CNS-205] gi|157918481|gb|ABV99908.1| transcription factor WhiB [Salinispora arenicola CNS-205] Length=120 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 41/77 (54%), Positives = 56/77 (73%), Gaps = 0/77 (0%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +S+ P + LPC DPDLWF+D+P LE+AK+LC CP+R +CLA A++RA Sbjct 1 MSLALAPLDLSVELEANLPCRKFDPDLWFSDSPTELELAKSLCGDCPLRVECLAGAVERA 60 Query 61 EPWGVWGGEIFDQGSIV 77 EPWGVWGGEIF++G++V Sbjct 61 EPWGVWGGEIFERGAVV 77 >gi|238060917|ref|ZP_04605626.1| transcription factor WhiB [Micromonospora sp. ATCC 39149] gi|237882728|gb|EEP71556.1| transcription factor WhiB [Micromonospora sp. ATCC 39149] Length=121 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 41/77 (54%), Positives = 56/77 (73%), Gaps = 0/77 (0%) Query 1 VSVLTVPRQTPRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRA 60 +S+ P + LPC DPDLWF+D+P LE+AK+LC CP+R +CLA A++RA Sbjct 1 MSLALAPVDLSVEMEANLPCRKVDPDLWFSDSPTELELAKSLCGDCPLRVECLAGAVERA 60 Query 61 EPWGVWGGEIFDQGSIV 77 EPWGVWGGEIF++G++V Sbjct 61 EPWGVWGGEIFERGAVV 77 >gi|84494602|ref|ZP_00993721.1| putative WhiB-family transcriptional regulator [Janibacter sp. HTCC2649] gi|84384095|gb|EAP99975.1| putative WhiB-family transcriptional regulator [Janibacter sp. HTCC2649] Length=95 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/75 (67%), Positives = 60/75 (80%), Gaps = 0/75 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 +PC D ++WFADTPAG+E AKTLC +CPI+ CLA AL R EPWGVWGGE+F+QG ++ Sbjct 20 VPCRENDAEIWFADTPAGVEFAKTLCGTCPIKNACLAGALDRQEPWGVWGGELFEQGVVI 79 Query 78 SHKRPRGRPRKDAVA 92 KRPRGRPRKD VA Sbjct 80 PRKRPRGRPRKDTVA 94 >gi|343927583|ref|ZP_08767051.1| putative WhiB family regulatory protein [Gordonia alkanivorans NBRC 16433] gi|343762224|dbj|GAA13977.1| putative WhiB family regulatory protein [Gordonia alkanivorans NBRC 16433] Length=96 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 39/61 (64%), Positives = 48/61 (79%), Gaps = 0/61 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC V D DLWFAD P LE AK +C CP++ QCL AAL RAEPWGVWGGEIF++G+++ Sbjct 23 LPCQVADADLWFADNPRDLERAKAMCADCPLKTQCLQAALDRAEPWGVWGGEIFERGAVI 82 Query 78 S 78 + Sbjct 83 A 83 >gi|256375075|ref|YP_003098735.1| transcription factor WhiB [Actinosynnema mirum DSM 43827] gi|255919378|gb|ACU34889.1| transcription factor WhiB [Actinosynnema mirum DSM 43827] Length=139 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/74 (67%), Positives = 59/74 (80%), Gaps = 0/74 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC +PDLWFAD PA LEVAK C +CP+ +CLA AL R EPWGVWGGEIF++G+++ Sbjct 38 LPCRTNNPDLWFADAPAELEVAKKFCAACPVIAECLAGALSRHEPWGVWGGEIFERGAVI 97 Query 78 SHKRPRGRPRKDAV 91 + KRPRGRPRKDA Sbjct 98 ARKRPRGRPRKDAT 111 >gi|117928977|ref|YP_873528.1| transcription factor WhiB [Acidothermus cellulolyticus 11B] gi|117649440|gb|ABK53542.1| transcription factor WhiB [Acidothermus cellulolyticus 11B] Length=102 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 43/74 (59%), Positives = 54/74 (73%), Gaps = 0/74 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 +PC +P+++FA+ P ++VAK LC CP R CL ALQR EPWGVWGGE+F G +V Sbjct 28 IPCLQVNPEIFFAEDPEDIDVAKALCRRCPRRVACLDDALQRREPWGVWGGELFSGGRVV 87 Query 78 SHKRPRGRPRKDAV 91 S KRPRGRPRK+ V Sbjct 88 SQKRPRGRPRKERV 101 >gi|258651815|ref|YP_003200971.1| transcription factor WhiB [Nakamurella multipartita DSM 44233] gi|258555040|gb|ACV77982.1| transcription factor WhiB [Nakamurella multipartita DSM 44233] Length=88 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 43/61 (71%), Positives = 48/61 (79%), Gaps = 0/61 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC GDPDL+FA+ P LE AK LCV CPIR QCLAAAL R EPWGVWGGEIFD G ++ Sbjct 15 LPCLSGDPDLFFAERPDELEQAKALCVDCPIRPQCLAAALDRGEPWGVWGGEIFDHGVVI 74 Query 78 S 78 + Sbjct 75 A 75 >gi|269796035|ref|YP_003315490.1| Transcription factor WhiB-like protein [Sanguibacter keddieii DSM 10542] gi|269098220|gb|ACZ22656.1| Transcription factor WhiB-like protein [Sanguibacter keddieii DSM 10542] Length=134 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 41/75 (55%), Positives = 51/75 (68%), Gaps = 0/75 (0%) Query 17 VLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSI 76 ++PC DP+LWFA+ +E AK LC CP+ CL A+ RAEPWGVWGGE+F G + Sbjct 59 LVPCRNNDPELWFAEQSTQVEQAKALCKECPLVAACLTGAVDRAEPWGVWGGEVFVDGVV 118 Query 77 VSHKRPRGRPRKDAV 91 V+ KR RGRPRK V Sbjct 119 VAKKRGRGRPRKSEV 133 >gi|333991551|ref|YP_004524165.1| transcriptional regulator [Mycobacterium sp. JDM601] gi|333487519|gb|AEF36911.1| transcriptional regulatory protein Whib-like WhiB7 [Mycobacterium sp. JDM601] Length=75 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 43/60 (72%), Positives = 49/60 (82%), Gaps = 1/60 (1%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 +PC+ DPDLWFAD PA LE AK LC CPIRRQCLA ALQR EPWGVWGGEI D+G+++ Sbjct 1 MPCNR-DPDLWFADNPADLERAKVLCGDCPIRRQCLALALQRGEPWGVWGGEILDRGTVI 59 >gi|145596249|ref|YP_001160546.1| transcription factor WhiB [Salinispora tropica CNB-440] gi|145305586|gb|ABP56168.1| transcription factor WhiB [Salinispora tropica CNB-440] Length=120 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 39/60 (65%), Positives = 51/60 (85%), Gaps = 0/60 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC DPDLWF+++P LEVAK+LC CP+R +CLA A++RAEPWGVWGGEIF++G++V Sbjct 18 LPCRKFDPDLWFSESPPELEVAKSLCGDCPLRVECLAGAVERAEPWGVWGGEIFERGAVV 77 >gi|302524543|ref|ZP_07276885.1| WhiB-family transcriptional regulator [Streptomyces sp. AA4] gi|302433438|gb|EFL05254.1| WhiB-family transcriptional regulator [Streptomyces sp. AA4] Length=161 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 39/63 (62%), Positives = 48/63 (77%), Gaps = 0/63 (0%) Query 16 PVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGS 75 P LPC D DLWFA++PA LE AK C SCP+R CLA AL R EPWGVWGGEIF++G+ Sbjct 74 PELPCRSRDADLWFAESPAELERAKAFCASCPVREACLAGALARREPWGVWGGEIFERGA 133 Query 76 IVS 78 +++ Sbjct 134 VIA 136 >gi|262203371|ref|YP_003274579.1| transcription factor WhiB [Gordonia bronchialis DSM 43247] gi|262086718|gb|ACY22686.1| transcription factor WhiB [Gordonia bronchialis DSM 43247] Length=122 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 39/61 (64%), Positives = 47/61 (78%), Gaps = 0/61 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC D DLWFA+ P LE AK LC CP+R QCL AAL RAEPWGVWGGEIF++G+++ Sbjct 49 LPCQAADADLWFAEDPRDLERAKELCAQCPLRAQCLQAALDRAEPWGVWGGEIFERGTVI 108 Query 78 S 78 + Sbjct 109 A 109 >gi|257068322|ref|YP_003154577.1| transcription factor WhiB-like protein [Brachybacterium faecium DSM 4810] gi|256559140|gb|ACU84987.1| Transcription factor WhiB-like protein [Brachybacterium faecium DSM 4810] Length=97 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 43/74 (59%), Positives = 52/74 (71%), Gaps = 1/74 (1%) Query 17 VLPCHVGDP-DLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGS 75 +LPCH D DL+F++ PA LE AK LC CP+ +C AL R EPWGVWGG IFD G Sbjct 18 MLPCHDTDAADLFFSERPADLEQAKALCAGCPLIEECRQGALDRGEPWGVWGGAIFDAGR 77 Query 76 IVSHKRPRGRPRKD 89 I++ KR RGRPRK+ Sbjct 78 IIAVKRGRGRPRKN 91 >gi|324999586|ref|ZP_08120698.1| WhiB family transcriptional regulator [Pseudonocardia sp. P1] Length=118 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 39/67 (59%), Positives = 47/67 (71%), Gaps = 0/67 (0%) Query 11 PRQRLPVLPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEI 70 P ++ LPC GD DLWFA+TP LE AK LC CP+R CL AL R EPWGVWGGEI Sbjct 26 PAEQWSALPCRNGDADLWFAETPGELEQAKALCGGCPLRNACLTGALDRGEPWGVWGGEI 85 Query 71 FDQGSIV 77 F++G ++ Sbjct 86 FERGRVI 92 >gi|291301846|ref|YP_003513124.1| transcription factor WhiB [Stackebrandtia nassauensis DSM 44728] gi|290571066|gb|ADD44031.1| transcription factor WhiB [Stackebrandtia nassauensis DSM 44728] Length=135 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 38/61 (63%), Positives = 46/61 (76%), Gaps = 0/61 (0%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 L C D DLWFADTP LE AK+LC CP++ +CLA A+ R EPWGVWGGEIF+ G+IV Sbjct 38 LACREYDADLWFADTPTELEFAKSLCADCPVKVECLAGAMDRQEPWGVWGGEIFEAGAIV 97 Query 78 S 78 + Sbjct 98 A 98 >gi|134097689|ref|YP_001103350.1| WhiB-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006351|ref|ZP_06564324.1| WhiB-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910312|emb|CAM00425.1| WhiB-family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length=129 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 39/61 (64%), Positives = 49/61 (81%), Gaps = 1/61 (1%) Query 18 LPCHVGDPDLWFADTPAGLEVAKTLCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIV 77 LPC DPDLWFA++P LE AK+LC CPIR +CLA AL R EPWGVWGGEIF++G+++ Sbjct 34 LPCRR-DPDLWFAESPGELEQAKSLCAECPIRAECLAGALSRGEPWGVWGGEIFERGTVI 92 Query 78 S 78 + Sbjct 93 A 93 Lambda K H 0.323 0.139 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128268350160 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40