BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3198c
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
gi|253800233|ref|YP_003033234.1| ATP-dependent DNA helicase II u... 1396 0.0
gi|308232372|ref|ZP_07415856.2| ATP-dependent DNA helicase II uv... 1395 0.0
gi|289747010|ref|ZP_06506388.1| DNA helicase II [Mycobacterium t... 1395 0.0
gi|254365820|ref|ZP_04981865.1| ATP-dependent DNA helicase II uv... 1394 0.0
gi|15610334|ref|NP_217714.1| ATP-dependent DNA helicase II UVRD2... 1394 0.0
gi|289448880|ref|ZP_06438624.1| ATP-dependent DNA helicase II uv... 1392 0.0
gi|254821701|ref|ZP_05226702.1| hypothetical protein MintA_17327... 1170 0.0
gi|240169962|ref|ZP_04748621.1| hypothetical protein MkanA1_1166... 1165 0.0
gi|41409395|ref|NP_962231.1| hypothetical protein MAP3297c [Myco... 1153 0.0
gi|336459535|gb|EGO38472.1| DNA/RNA helicase, superfamily I [Myc... 1153 0.0
gi|183981387|ref|YP_001849678.1| ATP-dependent DNA helicase II U... 1151 0.0
gi|296169034|ref|ZP_06850696.1| excision endonuclease subunit Uv... 1144 0.0
gi|118464110|ref|YP_883291.1| ATP-dependent DNA helicase [Mycoba... 1142 0.0
gi|118617994|ref|YP_906326.1| ATP-dependent DNA helicase II UvrD... 1138 0.0
gi|254776581|ref|ZP_05218097.1| ATP-dependent DNA helicase [Myco... 1128 0.0
gi|342861152|ref|ZP_08717801.1| hypothetical protein MCOL_19812 ... 1125 0.0
gi|15827263|ref|NP_301526.1| ATP-dependent DNA helicase [Mycobac... 1118 0.0
gi|13638521|sp|P53528.2|UVRD_MYCLE RecName: Full=Probable DNA he... 1117 0.0
gi|126434064|ref|YP_001069755.1| UvrD/REP helicase [Mycobacteriu... 1060 0.0
gi|108798380|ref|YP_638577.1| UvrD/REP helicase [Mycobacterium s... 1060 0.0
gi|119867477|ref|YP_937429.1| UvrD/REP helicase [Mycobacterium s... 1059 0.0
gi|333991552|ref|YP_004524166.1| ATP-dependent DNA helicase II U... 1058 0.0
gi|118469673|ref|YP_886318.1| ATP-dependent DNA helicase [Mycoba... 1050 0.0
gi|120402806|ref|YP_952635.1| UvrD/REP helicase [Mycobacterium v... 1047 0.0
gi|315445535|ref|YP_004078414.1| DNA/RNA helicase, superfamily I... 1040 0.0
gi|145225238|ref|YP_001135916.1| UvrD/REP helicase [Mycobacteriu... 1038 0.0
gi|169630592|ref|YP_001704241.1| DNA helicase II [Mycobacterium ... 976 0.0
gi|111023344|ref|YP_706316.1| helicase [Rhodococcus jostii RHA1]... 874 0.0
gi|226365852|ref|YP_002783635.1| ATP-dependent DNA helicase UvrD... 872 0.0
gi|226305711|ref|YP_002765671.1| ATP-dependent DNA helicase UvrD... 862 0.0
gi|229490963|ref|ZP_04384796.1| ATP-dependent DNA helicase [Rhod... 860 0.0
gi|331694979|ref|YP_004331218.1| UvrD/REP helicase [Pseudonocard... 848 0.0
gi|325675761|ref|ZP_08155445.1| ATP-dependent DNA helicase [Rhod... 845 0.0
gi|312140612|ref|YP_004007948.1| uvrd/rep family ATP-dependent D... 845 0.0
gi|343927585|ref|ZP_08767053.1| ATP-dependent DNA helicase UvrD2... 815 0.0
gi|54026506|ref|YP_120748.1| putative ATP-dependent DNA helicase... 794 0.0
gi|300783159|ref|YP_003763450.1| ATP-dependent DNA helicase [Amy... 794 0.0
gi|296140735|ref|YP_003647978.1| UvrD/REP helicase [Tsukamurella... 791 0.0
gi|333921401|ref|YP_004494982.1| Helicase [Amycolicicoccus subfl... 791 0.0
gi|262203374|ref|YP_003274582.1| UvrD/REP helicase [Gordonia bro... 791 0.0
gi|259506511|ref|ZP_05749413.1| ATP-dependent DNA helicase [Cory... 788 0.0
gi|25027350|ref|NP_737404.1| putative ATP-dependent DNA helicase... 788 0.0
gi|302524541|ref|ZP_07276883.1| DNA helicase II [Streptomyces sp... 781 0.0
gi|300779588|ref|ZP_07089444.1| excision endonuclease subunit Uv... 779 0.0
gi|134097688|ref|YP_001103349.1| ATP-dependent DNA helicase [Sac... 765 0.0
gi|19552005|ref|NP_600007.1| putative helicase [Corynebacterium ... 758 0.0
gi|227502915|ref|ZP_03932964.1| helicase [Corynebacterium accole... 758 0.0
gi|306835518|ref|ZP_07468532.1| excision endonuclease subunit Uv... 758 0.0
gi|296118831|ref|ZP_06837407.1| ATP-dependent DNA helicase [Cory... 757 0.0
gi|145294942|ref|YP_001137763.1| hypothetical protein cgR_0888 [... 757 0.0
>gi|253800233|ref|YP_003033234.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
KZN 1435]
gi|254233809|ref|ZP_04927134.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
C]
gi|124599338|gb|EAY58442.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
C]
gi|253321736|gb|ACT26339.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
KZN 1435]
gi|339296028|gb|AEJ48139.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
CCDC5079]
gi|339299639|gb|AEJ51749.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
CCDC5180]
Length=729
Score = 1396 bits (3613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 700/700 (100%), Positives = 700/700 (100%), Gaps = 0/700 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL
Sbjct 30 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 89
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL
Sbjct 90 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 149
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA
Sbjct 150 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 209
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV
Sbjct 210 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 269
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS
Sbjct 270 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 329
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA
Sbjct 330 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 389
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD
Sbjct 390 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 449
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE
Sbjct 450 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 509
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE
Sbjct 510 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 569
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA
Sbjct 570 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 629
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL
Sbjct 630 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 689
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT
Sbjct 690 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 729
>gi|308232372|ref|ZP_07415856.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
SUMu001]
gi|308370185|ref|ZP_07420579.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
SUMu002]
gi|308371268|ref|ZP_07424386.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
SUMu003]
22 more sequence titles
Length=703
Score = 1395 bits (3611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 700/700 (100%), Positives = 700/700 (100%), Gaps = 0/700 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL
Sbjct 4 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 63
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL
Sbjct 64 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 123
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA
Sbjct 124 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 183
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV
Sbjct 184 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 243
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS
Sbjct 244 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 303
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA
Sbjct 304 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 363
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD
Sbjct 364 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 423
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE
Sbjct 424 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 483
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE
Sbjct 484 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 543
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA
Sbjct 544 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 603
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL
Sbjct 604 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 663
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT
Sbjct 664 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 703
>gi|289747010|ref|ZP_06506388.1| DNA helicase II [Mycobacterium tuberculosis 02_1987]
gi|289687538|gb|EFD55026.1| DNA helicase II [Mycobacterium tuberculosis 02_1987]
Length=700
Score = 1395 bits (3610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/700 (99%), Positives = 700/700 (100%), Gaps = 0/700 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL
Sbjct 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL
Sbjct 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA
Sbjct 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV
Sbjct 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS
Sbjct 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA
Sbjct 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD
Sbjct 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE
Sbjct 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LRRR+EARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE
Sbjct 481 LRRRSEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA
Sbjct 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL
Sbjct 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT
Sbjct 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
>gi|254365820|ref|ZP_04981865.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
str. Haarlem]
gi|134151333|gb|EBA43378.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
str. Haarlem]
Length=722
Score = 1394 bits (3609), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 700/700 (100%), Positives = 700/700 (100%), Gaps = 0/700 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL
Sbjct 23 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 82
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL
Sbjct 83 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 142
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA
Sbjct 143 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 202
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV
Sbjct 203 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 262
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS
Sbjct 263 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 322
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA
Sbjct 323 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 382
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD
Sbjct 383 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 442
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE
Sbjct 443 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 502
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE
Sbjct 503 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 562
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA
Sbjct 563 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 622
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL
Sbjct 623 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 682
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT
Sbjct 683 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 722
>gi|15610334|ref|NP_217714.1| ATP-dependent DNA helicase II UVRD2 [Mycobacterium tuberculosis
H37Rv]
gi|15842783|ref|NP_337820.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551]
gi|31794374|ref|NP_856867.1| DNA helicase II [Mycobacterium bovis AF2122/97]
41 more sequence titles
Length=700
Score = 1394 bits (3609), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 700/700 (100%), Positives = 700/700 (100%), Gaps = 0/700 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL
Sbjct 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL
Sbjct 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA
Sbjct 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV
Sbjct 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS
Sbjct 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA
Sbjct 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD
Sbjct 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE
Sbjct 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE
Sbjct 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA
Sbjct 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL
Sbjct 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT
Sbjct 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
>gi|289448880|ref|ZP_06438624.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
CPHL_A]
gi|289421838|gb|EFD19039.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
CPHL_A]
Length=700
Score = 1392 bits (3602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/700 (99%), Positives = 699/700 (99%), Gaps = 0/700 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL
Sbjct 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL
Sbjct 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA
Sbjct 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV
Sbjct 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS
Sbjct 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA
Sbjct 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSE D
Sbjct 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSEHD 420
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE
Sbjct 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE
Sbjct 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA
Sbjct 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL
Sbjct 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT
Sbjct 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
>gi|254821701|ref|ZP_05226702.1| hypothetical protein MintA_17327 [Mycobacterium intracellulare
ATCC 13950]
Length=699
Score = 1170 bits (3028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 606/699 (87%), Positives = 635/699 (91%), Gaps = 0/699 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M +DPL AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTITHRIA LVA GHVAAGQVL
Sbjct 1 MPTVADPLTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVAGGHVAAGQVL 60
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLRA+DAAA TG VGAV ALTFHAAA+RQLRYFW RV+ DTGWQL
Sbjct 61 AVTFTQRAAGEMRSRLRAIDAAAGTGPAVGAVSALTFHAAAHRQLRYFWPRVVGDTGWQL 120
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTRL+ASTDDVRDLAGEIEWAKASLIGPEEY AVAAA RD PLDAA
Sbjct 121 LDSKFAVVARAASRTRLNASTDDVRDLAGEIEWAKASLIGPEEYPAAVAAAGRDIPLDAA 180
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
QIA VY+ YEALKARG+ VTLLDFDDLLLHTAAAIEND AVAEEF+DRYRCFVVDEYQDV
Sbjct 181 QIAGVYAAYEALKARGEHVTLLDFDDLLLHTAAAIENDPAVAEEFRDRYRCFVVDEYQDV 240
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVL+AWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDA VVRLERDYRS
Sbjct 241 TPLQQRVLTAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDATVVRLERDYRS 300
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLAN+VIAAARGRVAGSKL L GQR PGP P+FHEH DEPAEAA VAASIARLI
Sbjct 301 TPQVVSLANQVIAAARGRVAGSKLHLVGQRPPGPAPTFHEHPDEPAEAAAVAASIARLIE 360
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTPPSE+A+LYRVNAQSE+YEEALT+AGIAYQVRGGEGFFNRQEIKQALLAL R +ER
Sbjct 361 SGTPPSEIAVLYRVNAQSEIYEEALTEAGIAYQVRGGEGFFNRQEIKQALLALHRAAERG 420
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
+ L DVVRAVL PLGLTAQ PVGTRARERWEAL+ALAELVDDE+AQRP L PGLLAE
Sbjct 421 AEGPLPDVVRAVLEPLGLTAQEPVGTRARERWEALSALAELVDDEVAQRPQLDFPGLLAE 480
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LR RA+ARHPPVVQGV LASLHAAKGLEWDAVFLVGLADGTLPISHALAHG SE VEEE
Sbjct 481 LRMRADARHPPVVQGVALASLHAAKGLEWDAVFLVGLADGTLPISHALAHGAESEAVEEE 540
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVGITRAR HLAL+WAL+RSPGGRQ RKPSRFLNGIAPQ RA+P P SRRNR A
Sbjct 541 RRLLYVGITRARTHLALTWALARSPGGRQGRKPSRFLNGIAPQARAEPGPNKSRRNRATA 600
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
RCRICNN L T AAVMLRRCETCAAD+DE+LLL+LK+WRL AKEQ VPAYVVFTDNTL
Sbjct 601 TRCRICNNNLTTPAAVMLRRCETCAADIDEDLLLRLKAWRLDVAKEQKVPAYVVFTDNTL 660
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
IAIAEL P DD ALIAIPGIGARKLEQYG DVL+LVRGR
Sbjct 661 IAIAELRPDDDEALIAIPGIGARKLEQYGPDVLELVRGR 699
>gi|240169962|ref|ZP_04748621.1| hypothetical protein MkanA1_11664 [Mycobacterium kansasii ATCC
12478]
Length=699
Score = 1165 bits (3015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/697 (87%), Positives = 640/697 (92%), Gaps = 1/697 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M + +D L A LDD+QR+AVLAPRGP+CVLAGAGTGKTRTITHRIA LV+SGHVAAGQVL
Sbjct 1 MPMVADALTAALDDEQRQAVLAPRGPLCVLAGAGTGKTRTITHRIAHLVSSGHVAAGQVL 60
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMR+RLRAL AAA+ GSGVGAVQALTFHAAA+RQLRYFW RV+ D GWQL
Sbjct 61 AVTFTQRAAGEMRARLRALGAAAQVGSGVGAVQALTFHAAAHRQLRYFWPRVVGDIGWQL 120
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LD+KFAVVARAASRTRL ASTDDVRDLAGEIEWAKASLIGPE+Y + VAAARRD PLDAA
Sbjct 121 LDTKFAVVARAASRTRLQASTDDVRDLAGEIEWAKASLIGPEDYPSEVAAARRDTPLDAA 180
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
+IAAVYSEYE+LK R D VTLLDFDDLLLHTAAAIENDAAVAEEF+DRYRCFVVDEYQDV
Sbjct 181 RIAAVYSEYESLKVRDDSVTLLDFDDLLLHTAAAIENDAAVAEEFRDRYRCFVVDEYQDV 240
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLL+FSR FPDA VVRLERDYRS
Sbjct 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLEFSRSFPDATVVRLERDYRS 300
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLANRVI ARGRVAGSKLRLSGQREPGP PSF E+ DEPAEAA V ASI RLI
Sbjct 301 TPQVVSLANRVIEVARGRVAGSKLRLSGQREPGPAPSFQEYPDEPAEAAAVTASIGRLIE 360
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGT PSE+AILYRVNAQSEVYEEALT+AGIAYQVRGGEGFF+RQEIKQAL+ALQR ++R
Sbjct 361 SGTAPSEIAILYRVNAQSEVYEEALTEAGIAYQVRGGEGFFDRQEIKQALVALQRAADRG 420
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
TDAAL DVVR VL PLGLTA P G RARERWE LTALA+LVDDE+AQRP LQLPGLLAE
Sbjct 421 TDAALPDVVRGVLEPLGLTAHEPAGARARERWEGLTALAQLVDDEVAQRPHLQLPGLLAE 480
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LR RA+ARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGP+SEPVEEE
Sbjct 481 LRARADARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPDSEPVEEE 540
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVGITRARVHLALSWAL+R+PGGRQSRKPSRFLNGIAPQTRA+P G +RRNR
Sbjct 541 RRLLYVGITRARVHLALSWALARAPGGRQSRKPSRFLNGIAPQTRAEPGAGKARRNR-TT 599
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
ARCR+CN EL T AAVMLRRCETCA DVDEELLLQLKSWRL+ AKEQNVPAYVVFTDNTL
Sbjct 600 ARCRVCNKELITPAAVMLRRCETCAGDVDEELLLQLKSWRLNIAKEQNVPAYVVFTDNTL 659
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVR 697
IAIAE+ P DD ALIAIPGIGARKLEQYG+DVL +VR
Sbjct 660 IAIAEMRPDDDEALIAIPGIGARKLEQYGADVLDMVR 696
>gi|41409395|ref|NP_962231.1| hypothetical protein MAP3297c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398226|gb|AAS05847.1| UvrD2 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=703
Score = 1153 bits (2983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/703 (85%), Positives = 632/703 (90%), Gaps = 4/703 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M +DPL AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTITHRIA LVA GHVAA QVL
Sbjct 1 MPTLADPLTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVAGGHVAANQVL 60
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLR L AAA T + VG+V ALTFHAAA+RQLRYFW RV+ DTGWQL
Sbjct 61 AVTFTQRAAGEMRSRLRVLAAAAGTDAAVGSVSALTFHAAAHRQLRYFWPRVVGDTGWQL 120
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTR++ASTDDVRDLAGEIEWAKASLIGPEEY AVAAA RD PLDAA
Sbjct 121 LDSKFAVVARAASRTRINASTDDVRDLAGEIEWAKASLIGPEEYPAAVAAAGRDIPLDAA 180
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
++A VY+ YEALKARGD VTLLDFDDLLLHTAAAIEND AVAEEF+DRYRCFVVDEYQDV
Sbjct 181 RVAGVYAAYEALKARGDHVTLLDFDDLLLHTAAAIENDPAVAEEFRDRYRCFVVDEYQDV 240
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVL+AWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDA VVRLERDYRS
Sbjct 241 TPLQQRVLAAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDATVVRLERDYRS 300
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLAN+VIAAARGRVAGSKL L GQR PGPVP+FHEHSDEPAEAA VA SIARLI
Sbjct 301 TPQVVSLANQVIAAARGRVAGSKLHLVGQRPPGPVPTFHEHSDEPAEAAAVAKSIARLIE 360
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTP SE+A+LYRVNAQSE+YEEALT+AGI YQVRGGEGFFNRQEIKQALLALQR +ER+
Sbjct 361 SGTPASEIAVLYRVNAQSEIYEEALTEAGIPYQVRGGEGFFNRQEIKQALLALQRAAERE 420
Query 421 TDAA----LSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPG 476
+ A L VVRAVL PLGLTA+ PVGTRARERWEAL ALAELVDDE+A+RP L G
Sbjct 421 GEDAREEPLPAVVRAVLEPLGLTAEEPVGTRARERWEALRALAELVDDEVARRPQLDFAG 480
Query 477 LLAELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEP 536
LL ELR RA+ARHPPVVQGV LASLHAAKGLEWDAVFLVGLADGTLPISHALAHG +SE
Sbjct 481 LLTELRMRADARHPPVVQGVALASLHAAKGLEWDAVFLVGLADGTLPISHALAHGADSEA 540
Query 537 VEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRN 596
VEEERRLLYVGITRAR HLALSWAL+RSPGGRQSRKPSRFLNGIAPQTRA+ P SRRN
Sbjct 541 VEEERRLLYVGITRARTHLALSWALARSPGGRQSRKPSRFLNGIAPQTRAEAAPARSRRN 600
Query 597 RGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFT 656
R A RCRICNN L T AAVMLRRCETCAAD+DE+LL++LK+WRL AKEQ VPAYVVFT
Sbjct 601 RSTATRCRICNNNLTTPAAVMLRRCETCAADIDEDLLVRLKAWRLDVAKEQKVPAYVVFT 660
Query 657 DNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
DNTLIAIAEL P D+ ALIAIPGIGARKLEQYG DVL+LVRGR
Sbjct 661 DNTLIAIAELRPGDEQALIAIPGIGARKLEQYGPDVLELVRGR 703
>gi|336459535|gb|EGO38472.1| DNA/RNA helicase, superfamily I [Mycobacterium avium subsp. paratuberculosis
S397]
Length=706
Score = 1153 bits (2982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/703 (85%), Positives = 632/703 (90%), Gaps = 4/703 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M +DPL AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTITHRIA LVA GHVAA QVL
Sbjct 4 MPTLADPLTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVAGGHVAANQVL 63
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLR L AAA T + VG+V ALTFHAAA+RQLRYFW RV+ DTGWQL
Sbjct 64 AVTFTQRAAGEMRSRLRVLAAAAGTDAAVGSVSALTFHAAAHRQLRYFWPRVVGDTGWQL 123
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTR++ASTDDVRDLAGEIEWAKASLIGPEEY AVAAA RD PLDAA
Sbjct 124 LDSKFAVVARAASRTRINASTDDVRDLAGEIEWAKASLIGPEEYPAAVAAAGRDIPLDAA 183
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
++A VY+ YEALKARGD VTLLDFDDLLLHTAAAIEND AVAEEF+DRYRCFVVDEYQDV
Sbjct 184 RVAGVYAAYEALKARGDHVTLLDFDDLLLHTAAAIENDPAVAEEFRDRYRCFVVDEYQDV 243
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVL+AWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDA VVRLERDYRS
Sbjct 244 TPLQQRVLAAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDATVVRLERDYRS 303
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLAN+VIAAARGRVAGSKL L GQR PGPVP+FHEHSDEPAEAA VA SIARLI
Sbjct 304 TPQVVSLANQVIAAARGRVAGSKLHLVGQRPPGPVPTFHEHSDEPAEAAAVAKSIARLIE 363
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTP SE+A+LYRVNAQSE+YEEALT+AGI YQVRGGEGFFNRQEIKQALLALQR +ER+
Sbjct 364 SGTPASEIAVLYRVNAQSEIYEEALTEAGIPYQVRGGEGFFNRQEIKQALLALQRAAERE 423
Query 421 TDAA----LSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPG 476
+ A L VVRAVL PLGLTA+ PVGTRARERWEAL ALAELVDDE+A+RP L G
Sbjct 424 GEDAREEPLPAVVRAVLEPLGLTAEEPVGTRARERWEALRALAELVDDEVARRPQLDFAG 483
Query 477 LLAELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEP 536
LL ELR RA+ARHPPVVQGV LASLHAAKGLEWDAVFLVGLADGTLPISHALAHG +SE
Sbjct 484 LLTELRMRADARHPPVVQGVALASLHAAKGLEWDAVFLVGLADGTLPISHALAHGADSEA 543
Query 537 VEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRN 596
VEEERRLLYVGITRAR HLALSWAL+RSPGGRQSRKPSRFLNGIAPQTRA+ P SRRN
Sbjct 544 VEEERRLLYVGITRARTHLALSWALARSPGGRQSRKPSRFLNGIAPQTRAEAAPARSRRN 603
Query 597 RGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFT 656
R A RCRICNN L T AAVMLRRCETCAAD+DE+LL++LK+WRL AKEQ VPAYVVFT
Sbjct 604 RSTATRCRICNNNLTTPAAVMLRRCETCAADIDEDLLVRLKAWRLDVAKEQKVPAYVVFT 663
Query 657 DNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
DNTLIAIAEL P D+ ALIAIPGIGARKLEQYG DVL+LVRGR
Sbjct 664 DNTLIAIAELRPGDEQALIAIPGIGARKLEQYGPDVLELVRGR 706
>gi|183981387|ref|YP_001849678.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium marinum M]
gi|183174713|gb|ACC39823.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium marinum M]
Length=709
Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/697 (87%), Positives = 642/697 (93%), Gaps = 1/697 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M + PL AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTITHRIA LVASGHVAAGQVL
Sbjct 11 MPTLAQPLTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVASGHVAAGQVL 70
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMR+RLR LDAAA+T SGVGAVQALTFHAAA+RQLRYFW RV+ D GWQL
Sbjct 71 AVTFTQRAAGEMRARLRGLDAAAQTSSGVGAVQALTFHAAAHRQLRYFWPRVVGDIGWQL 130
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAA R RL+AS+D+VRDLAGEIEWAKASLI PE+Y AVAAA RD PLDAA
Sbjct 131 LDSKFAVVARAAGRARLNASSDNVRDLAGEIEWAKASLITPEQYPAAVAAASRDTPLDAA 190
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
QIAAVY+EYE+LK R + +TLLDFDDLLLHTAAAIENDAAVA+EF+DRYRCFVVDEYQDV
Sbjct 191 QIAAVYAEYESLKVRDESLTLLDFDDLLLHTAAAIENDAAVAQEFRDRYRCFVVDEYQDV 250
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVL AWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDA +VRLERDYRS
Sbjct 251 TPLQQRVLLAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDATLVRLERDYRS 310
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLANRVIAAARGRVAGS+L+L+GQREPGP PSF E+ DE AEA VAASIARLI
Sbjct 311 TPQVVSLANRVIAAARGRVAGSRLQLTGQREPGPAPSFDEYPDEVAEATAVAASIARLIQ 370
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTP SE+AILYRVNAQSEVYEEALT+AGIAYQVRGGEGFFNRQE+KQA++ALQR +ERD
Sbjct 371 SGTPASEIAILYRVNAQSEVYEEALTEAGIAYQVRGGEGFFNRQEVKQAMVALQRAAERD 430
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
+AAL DVVR VL PLGLTA+ P GTRARERWEAL+ALA+LVDDE+AQRP LQL GLLAE
Sbjct 431 IEAALPDVVRTVLEPLGLTAEEPAGTRARERWEALSALAQLVDDEVAQRPHLQLAGLLAE 490
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LR RA+ARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGP SE VEEE
Sbjct 491 LRARADARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPESEQVEEE 550
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVG+TRARVHLAL+WAL+RSPGGRQ RKPSRFLNGIAPQTRADP P +RRNRG
Sbjct 551 RRLLYVGVTRARVHLALTWALARSPGGRQGRKPSRFLNGIAPQTRADPGPAKNRRNRG-P 609
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
RCRICN EL T AAVMLRRCETCA DV+EELLLQLKSWRL+TAKEQNVPAYVVFTDNTL
Sbjct 610 VRCRICNKELTTPAAVMLRRCETCAGDVNEELLLQLKSWRLNTAKEQNVPAYVVFTDNTL 669
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVR 697
IAIAELLP DDA+LIAIPGIGARKLEQYG+DVL+LVR
Sbjct 670 IAIAELLPADDASLIAIPGIGARKLEQYGADVLELVR 706
>gi|296169034|ref|ZP_06850696.1| excision endonuclease subunit UvrD [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896293|gb|EFG75952.1| excision endonuclease subunit UvrD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=728
Score = 1144 bits (2960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/698 (86%), Positives = 631/698 (91%), Gaps = 0/698 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M + +D L AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTITHRIA LVASGHVAAGQVL
Sbjct 30 MPMVADALTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVASGHVAAGQVL 89
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLR LDAAA T +GVG VQALTFHAAA+RQLRYFW RV+ DTGWQL
Sbjct 90 AVTFTQRAAGEMRSRLRTLDAAAGTDTGVGGVQALTFHAAAHRQLRYFWPRVVGDTGWQL 149
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LD+KFAVVARAASR+R++ASTDDVRDLAGEIEWAKASLIGPEEY AVAAA RD PLDAA
Sbjct 150 LDTKFAVVARAASRSRINASTDDVRDLAGEIEWAKASLIGPEEYPAAVAAAGRDIPLDAA 209
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
++A VY+ YEALK R + VTLLDFDDLLLHTAAAIENDAAVA+EF+ RYRCFVVDEYQDV
Sbjct 210 RVATVYAAYEALKVRDESVTLLDFDDLLLHTAAAIENDAAVADEFRGRYRCFVVDEYQDV 269
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVL AWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRR+PDA VVRLERDYRS
Sbjct 270 TPLQQRVLQAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRYPDATVVRLERDYRS 329
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLAN+VIAAARGRVAGSKL L GQR PGP PSF E+ DEPAEAA VAASIARLI
Sbjct 330 TPQVVSLANQVIAAARGRVAGSKLHLVGQRPPGPAPSFRENPDEPAEAAAVAASIARLIE 389
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
+GTPPSE+A+LYRVNAQSE YEEALT+AGI YQVRGGEGFF RQEIKQALLALQR +ER
Sbjct 390 AGTPPSEIAVLYRVNAQSEAYEEALTEAGIPYQVRGGEGFFTRQEIKQALLALQRAAERG 449
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
+ L VVRAVL PLGLTA+PPVGTR RERWEALTALAELVDDE+AQRP L L GLLAE
Sbjct 450 AEGPLPAVVRAVLEPLGLTAEPPVGTRVRERWEALTALAELVDDEVAQRPQLDLAGLLAE 509
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LR RA+ARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGP SE VEEE
Sbjct 510 LRLRADARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPESEAVEEE 569
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVGITRAR HLALSWAL+RSPGGRQ RKPSRFLNGIAPQ RAD P SRRNRG A
Sbjct 570 RRLLYVGITRARTHLALSWALARSPGGRQGRKPSRFLNGIAPQARADAGPTKSRRNRGPA 629
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
ARCR+CN +L T+AAVMLRRCETCA DVDEELLL+LK+WRL AKEQ VPAYVVFTDNTL
Sbjct 630 ARCRVCNKDLATAAAVMLRRCETCAGDVDEELLLRLKAWRLDVAKEQKVPAYVVFTDNTL 689
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
IAIAEL P D+ ALIAIPGIGARKLEQYG DVL+LVRG
Sbjct 690 IAIAELRPGDEDALIAIPGIGARKLEQYGPDVLELVRG 727
>gi|118464110|ref|YP_883291.1| ATP-dependent DNA helicase [Mycobacterium avium 104]
gi|118165397|gb|ABK66294.1| ATP-dependent DNA helicase [Mycobacterium avium 104]
Length=743
Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/703 (85%), Positives = 632/703 (90%), Gaps = 4/703 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M +DPL AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTITHRIA LVA GHVAA QVL
Sbjct 41 MPTLADPLTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVAGGHVAANQVL 100
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLRAL AAA T + VG+V ALTFHAAA+RQLRYFW RV+ DTGWQL
Sbjct 101 AVTFTQRAAGEMRSRLRALAAAAGTDAAVGSVSALTFHAAAHRQLRYFWPRVVGDTGWQL 160
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTR++ASTDDVRDLAGEIEWAKASLIGPEEY AVAAA RD PLDAA
Sbjct 161 LDSKFAVVARAASRTRINASTDDVRDLAGEIEWAKASLIGPEEYPAAVAAAGRDIPLDAA 220
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
++A VY+ YEALKARGD VTLLDFDDLLLHTAAAIEND AVAEEF+DRYRCFVVDEYQDV
Sbjct 221 RVAGVYAAYEALKARGDHVTLLDFDDLLLHTAAAIENDPAVAEEFRDRYRCFVVDEYQDV 280
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVL+AWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDA VVRLERDYRS
Sbjct 281 TPLQQRVLAAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDATVVRLERDYRS 340
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLAN+VIAAARGRVAGSKL L GQR PGPVP+FHEH DEPAEAA VA SIARLI
Sbjct 341 TPQVVSLANQVIAAARGRVAGSKLHLVGQRPPGPVPTFHEHPDEPAEAAAVAKSIARLIE 400
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTP SE+A+LYRVNAQSE+YEEALT+AGI YQVRGGEGFFNRQEIKQALLALQR +ER+
Sbjct 401 SGTPASEIAVLYRVNAQSEIYEEALTEAGIPYQVRGGEGFFNRQEIKQALLALQRAAERE 460
Query 421 TDAA----LSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPG 476
+ A L VVRAVL PLGLTA PVGTRARERWEAL ALAELVDDE+A+RP L G
Sbjct 461 GEDARAEPLPAVVRAVLEPLGLTADEPVGTRARERWEALRALAELVDDEVARRPQLDFAG 520
Query 477 LLAELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEP 536
LL ELR RA+ARHPPVVQGV LASLHAAKGLEWDAVFLVGLADGTLPISHALAHG +SE
Sbjct 521 LLTELRMRADARHPPVVQGVALASLHAAKGLEWDAVFLVGLADGTLPISHALAHGADSEA 580
Query 537 VEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRN 596
VEEERRLLYVGITRAR HLALSWAL+RSPGGRQSRKPSRFLNGIAPQTRA+ P SRRN
Sbjct 581 VEEERRLLYVGITRARTHLALSWALARSPGGRQSRKPSRFLNGIAPQTRAEAAPTRSRRN 640
Query 597 RGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFT 656
R AA RCRICNN L T AAVMLRRCETCAAD+DE+LL++LK+WRL AKEQ VPAYVVFT
Sbjct 641 RSAATRCRICNNNLTTPAAVMLRRCETCAADIDEDLLVRLKAWRLDVAKEQKVPAYVVFT 700
Query 657 DNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
DNTLIAIAEL P D+ ALIAIPGIGARKLEQYG DVL+LVRGR
Sbjct 701 DNTLIAIAELRPGDEQALIAIPGIGARKLEQYGPDVLELVRGR 743
>gi|118617994|ref|YP_906326.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium ulcerans Agy99]
gi|118570104|gb|ABL04855.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium ulcerans Agy99]
Length=699
Score = 1138 bits (2943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/697 (86%), Positives = 638/697 (92%), Gaps = 1/697 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M + PL AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTITHRIA LVASGHVAAGQVL
Sbjct 1 MPTLAQPLTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVASGHVAAGQVL 60
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMR+RLR LDAAA+T SGVGAVQALTFHAAA+RQLRYFW RV+ D GWQL
Sbjct 61 AVTFTQRAAGEMRARLRGLDAAAQTSSGVGAVQALTFHAAAHRQLRYFWPRVVGDIGWQL 120
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAA R RL+AS+D+VRDLAGEIEWAKASLI PE+Y AV AA RD PLDAA
Sbjct 121 LDSKFAVVARAAGRARLNASSDNVRDLAGEIEWAKASLITPEQYPAAVVAASRDTPLDAA 180
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
QIAAVY+EYE+LK R + +TLLDFDDLLLHTAAAIENDAAVA+EF+DRYRCFVVDEYQDV
Sbjct 181 QIAAVYAEYESLKVRDESLTLLDFDDLLLHTAAAIENDAAVAQEFRDRYRCFVVDEYQDV 240
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVL AWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDA +VRLERDYRS
Sbjct 241 TPLQQRVLLAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDATLVRLERDYRS 300
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLANRVIAAARGRVAGS+L+L+GQREPGP PSF E+ DE AEA VAASIARLI
Sbjct 301 TPQVVSLANRVIAAARGRVAGSRLQLTGQREPGPAPSFDEYPDEVAEATAVAASIARLIQ 360
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTP SE+AILYRVNAQSEVYEEALT+AGIAYQVRGGEGFFNRQE+KQA++ALQR +ERD
Sbjct 361 SGTPASEIAILYRVNAQSEVYEEALTEAGIAYQVRGGEGFFNRQEVKQAMVALQRAAERD 420
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
+AAL DVVR VL PLGLTA+ P GTRARERWEAL+ALA+LVDDE+AQRP LQL GLLAE
Sbjct 421 IEAALPDVVRTVLEPLGLTAEEPAGTRARERWEALSALAQLVDDEVAQRPHLQLAGLLAE 480
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LR RA+ARHPP VQGVTLASLHAAKGLEW AVFLVGLADGTLPISHALAHGP SE VEEE
Sbjct 481 LRARADARHPPEVQGVTLASLHAAKGLEWHAVFLVGLADGTLPISHALAHGPESEQVEEE 540
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVG+TRARVHLAL+WAL+RSPGGRQ RKPSRFLNGIAPQTRADP P +RRNRG
Sbjct 541 RRLLYVGVTRARVHLALTWALARSPGGRQGRKPSRFLNGIAPQTRADPGPAKNRRNRG-P 599
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
RCRICN EL T AAVMLRRCETCA DV+EELLLQLKSWRL+TAKEQNVPAYVVFTDNTL
Sbjct 600 VRCRICNKELTTPAAVMLRRCETCAGDVNEELLLQLKSWRLNTAKEQNVPAYVVFTDNTL 659
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVR 697
IAIAEL P DDA+LIAIPGIGAR+LEQYG+DVL+LVR
Sbjct 660 IAIAELRPADDASLIAIPGIGARRLEQYGADVLELVR 696
>gi|254776581|ref|ZP_05218097.1| ATP-dependent DNA helicase [Mycobacterium avium subsp. avium
ATCC 25291]
Length=703
Score = 1128 bits (2918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/703 (85%), Positives = 631/703 (90%), Gaps = 4/703 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M +DPL AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTITHRIA LVA GHVAA QVL
Sbjct 1 MPTLADPLTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVAGGHVAANQVL 60
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLRAL AAA T + VG+V ALTFHAAA+RQLRYFW RV+ DTGWQL
Sbjct 61 AVTFTQRAAGEMRSRLRALAAAAGTDAAVGSVSALTFHAAAHRQLRYFWPRVVGDTGWQL 120
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASRTR++ASTDDVRDLAGEIEWAKASLIGPEEY AVAAA RD PLDAA
Sbjct 121 LDSKFAVVARAASRTRINASTDDVRDLAGEIEWAKASLIGPEEYPAAVAAAGRDIPLDAA 180
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
++A VY+ YEALKARGD VTLLDFDDLLLHTAAAIEND AVAEEF+DRYRCFVVDEYQDV
Sbjct 181 RVAGVYAAYEALKARGDHVTLLDFDDLLLHTAAAIENDPAVAEEFRDRYRCFVVDEYQDV 240
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVL+AWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDA VVRLERDYRS
Sbjct 241 TPLQQRVLAAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDATVVRLERDYRS 300
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLAN+VIAAARGRVAGSKL L GQR PGPVP+FHEH DEPAEAA VA SIARLI
Sbjct 301 TPQVVSLANQVIAAARGRVAGSKLHLVGQRPPGPVPTFHEHPDEPAEAAAVAKSIARLIE 360
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SGTP SE+A+LYRVNAQSE+YEEALT+ GI YQVRGGEGFFNRQEIKQALLALQR +ER+
Sbjct 361 SGTPASEIAVLYRVNAQSEIYEEALTEVGIPYQVRGGEGFFNRQEIKQALLALQRAAERE 420
Query 421 TDAA----LSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPG 476
+ A L VVRAVL PLGLTA PVGTRARERWEAL ALAELVDDE+A+RP L G
Sbjct 421 GEGAREEPLPAVVRAVLEPLGLTADEPVGTRARERWEALRALAELVDDEVARRPQLDFAG 480
Query 477 LLAELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEP 536
LL ELR RA+ARHPPVVQGV LASLHAAKGLEWDAVFLVGLADGTLPISHALAHG +SE
Sbjct 481 LLTELRMRADARHPPVVQGVALASLHAAKGLEWDAVFLVGLADGTLPISHALAHGADSEA 540
Query 537 VEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRN 596
VEEERRLLYVGITRAR +LALSWAL+RSPGGRQSRKPSRFLNGIAPQTRA+ P SRRN
Sbjct 541 VEEERRLLYVGITRARTYLALSWALARSPGGRQSRKPSRFLNGIAPQTRAEAAPTRSRRN 600
Query 597 RGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFT 656
R AA RCRICNN L T AAVMLRRCETCAAD+DE+LL++LK+WRL AKEQ VPAYVVFT
Sbjct 601 RNAATRCRICNNNLTTPAAVMLRRCETCAADIDEDLLVRLKAWRLDVAKEQKVPAYVVFT 660
Query 657 DNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
DNTLIAIAEL P D+ ALIAIPGIGARKLEQYG DVL+LVRGR
Sbjct 661 DNTLIAIAELRPGDEQALIAIPGIGARKLEQYGPDVLELVRGR 703
>gi|342861152|ref|ZP_08717801.1| hypothetical protein MCOL_19812 [Mycobacterium colombiense CECT
3035]
gi|342131596|gb|EGT84866.1| hypothetical protein MCOL_19812 [Mycobacterium colombiense CECT
3035]
Length=703
Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/702 (85%), Positives = 629/702 (90%), Gaps = 4/702 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M +DP+ AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTIT RIA LVA GHVAAGQVL
Sbjct 1 MPTVADPVTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITQRIAQLVAGGHVAAGQVL 60
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAAGEMRSRLR +DAAA G+ VGAV ALTFHAAA+RQLRYFW RV+ DTGWQL
Sbjct 61 AVTFTQRAAGEMRSRLRMIDAAAGAGTTVGAVSALTFHAAAHRQLRYFWPRVVGDTGWQL 120
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFAVVARAASR R++A TDDVRDLAGEIEWAKASLIGPEEY AVAAA RD PLDAA
Sbjct 121 LDSKFAVVARAASRARINAGTDDVRDLAGEIEWAKASLIGPEEYPAAVAAAARDIPLDAA 180
Query 181 QIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDV 240
++A VY+ YEALKARGD VTLLDFDDLLLHTAAAIEND AVAEEF+DRYRCFVVDEYQDV
Sbjct 181 RVATVYAAYEALKARGDNVTLLDFDDLLLHTAAAIENDPAVAEEFRDRYRCFVVDEYQDV 240
Query 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRS 300
TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDA VVRLERDYRS
Sbjct 241 TPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDATVVRLERDYRS 300
Query 301 TPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIA 360
TPQVVSLAN+VIA+ARGRVAGSKL L GQR PGP PSFHEH DEPAEAA VAASI RLI
Sbjct 301 TPQVVSLANQVIASARGRVAGSKLHLVGQRAPGPAPSFHEHPDEPAEAAAVAASIKRLIE 360
Query 361 SGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD 420
SG PPSE+A+LYRVNAQSE+YEEALT+AGIAYQVRGGEGFFNRQEIKQALLAL R +ER
Sbjct 361 SGVPPSEIAVLYRVNAQSEIYEEALTEAGIAYQVRGGEGFFNRQEIKQALLALHRAAERG 420
Query 421 T----DAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPG 476
+ + L VVR +L PLGLTA+ PVG RARERWEALTALAELVDDE+AQRP L+LPG
Sbjct 421 SEHGPEGPLPAVVRTILEPLGLTAEEPVGARARERWEALTALAELVDDEVAQRPQLELPG 480
Query 477 LLAELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEP 536
L+AELR RA++RHPPVVQGV LASLHAAKGLEWDAVFLVGLADGTLPISHALAHG SE
Sbjct 481 LVAELRTRADSRHPPVVQGVALASLHAAKGLEWDAVFLVGLADGTLPISHALAHGAESEA 540
Query 537 VEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRN 596
VEEERRLLYVGITRAR+HL LSWALSRSPGGRQSRKPSRFLNGIAPQ RAD P SRRN
Sbjct 541 VEEERRLLYVGITRARIHLGLSWALSRSPGGRQSRKPSRFLNGIAPQARADATPNKSRRN 600
Query 597 RGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFT 656
RG A RCRICNN L T AAVMLRRCETCAAD+DE+LLL+LK+WRL AKEQ VPAYVVFT
Sbjct 601 RGTATRCRICNNNLTTPAAVMLRRCETCAADIDEDLLLRLKAWRLDVAKEQKVPAYVVFT 660
Query 657 DNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
DNTLIAIAEL P D+ ALIAIPGIGARKLEQYG DVL+LVRG
Sbjct 661 DNTLIAIAELRPGDEDALIAIPGIGARKLEQYGPDVLELVRG 702
>gi|15827263|ref|NP_301526.1| ATP-dependent DNA helicase [Mycobacterium leprae TN]
gi|221229741|ref|YP_002503157.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
gi|13092812|emb|CAC30146.1| putative ATP-dependent DNA helicase [Mycobacterium leprae]
gi|219932848|emb|CAR70731.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
Length=717
Score = 1118 bits (2892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/706 (83%), Positives = 622/706 (89%), Gaps = 7/706 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M + +PL AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTITHRIA LV +GHVA GQVL
Sbjct 4 MVMVVNPLTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAHLVGAGHVATGQVL 63
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAA EMRSRLRAL AA + S G V+ LTFHAAA+RQLRYFW RVI DTGWQL
Sbjct 64 AVTFTQRAAAEMRSRLRALGAAVQAVSDFGVVRVLTFHAAAHRQLRYFWPRVIGDTGWQL 123
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFA VARAAS RLHA TDDV DLAGEIEWAKASLIGPEEYV AVAA RD PLDAA
Sbjct 124 LDSKFATVARAASSVRLHAGTDDVCDLAGEIEWAKASLIGPEEYVAAVAAIGRDTPLDAA 183
Query 181 QIAAVYSEYEALKARGDGV---TLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEY 237
QIA+VY+ YEALKARG+GV TLLDFDDLLLHTAAAIENDAAVAEEF+DRYRCFVVDEY
Sbjct 184 QIASVYAAYEALKARGNGVPGVTLLDFDDLLLHTAAAIENDAAVAEEFRDRYRCFVVDEY 243
Query 238 QDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERD 297
QDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASP FLLDF RRFPDA VVRLERD
Sbjct 244 QDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPCFLLDFPRRFPDATVVRLERD 303
Query 298 YRSTPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIAR 357
YRSTPQVVSLAN+VIAAA GRVA SK +LSGQREPGP SFHE+SDEPAEAA VAASIAR
Sbjct 304 YRSTPQVVSLANQVIAAAHGRVADSKFQLSGQREPGPAASFHEYSDEPAEAAAVAASIAR 363
Query 358 LIASGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVS 417
LI GT PSE+A+LYRVNAQSE YEEALT+ GIAYQVRGGEGFFNRQEIKQALLALQR +
Sbjct 364 LIEFGTSPSEIAVLYRVNAQSEAYEEALTEVGIAYQVRGGEGFFNRQEIKQALLALQRSA 423
Query 418 ERDT----DAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQ 473
ER + ++ LSDVVR VL PLGLTA+ PVG+RAR+RWEALTALAEL DDE+AQ P L
Sbjct 424 ERSSQTEPNSPLSDVVRGVLEPLGLTAEKPVGSRARDRWEALTALAELADDEVAQHPRLD 483
Query 474 LPGLLAELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPN 533
LPGLLAELR RA+ARHPPVVQGVTLASLHA KGLEWDAVFLVGLADGTLPIS ALAHG
Sbjct 484 LPGLLAELRLRADARHPPVVQGVTLASLHAVKGLEWDAVFLVGLADGTLPISRALAHGAE 543
Query 534 SEPVEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTS 593
SEPVEEERRLLYVGITRARV+LALSWALSR+PGGRQSRKPSRFLN IAPQ +P S
Sbjct 544 SEPVEEERRLLYVGITRARVYLALSWALSRTPGGRQSRKPSRFLNDIAPQMGQNPASSRS 603
Query 594 RRNRGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYV 653
RRNR A RCRIC N+L T AAVML+RC+ CAADVDEELLLQLK+WRLSTAKEQNVPAYV
Sbjct 604 RRNRTATLRCRICKNDLTTPAAVMLQRCQICAADVDEELLLQLKAWRLSTAKEQNVPAYV 663
Query 654 VFTDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
V TDNTLIAIAELLP D+AALIA+PG+ RK+EQYGSDVLQLVR R
Sbjct 664 VLTDNTLIAIAELLPADEAALIAVPGMSVRKIEQYGSDVLQLVRCR 709
>gi|13638521|sp|P53528.2|UVRD_MYCLE RecName: Full=Probable DNA helicase II homolog
Length=714
Score = 1117 bits (2889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/706 (83%), Positives = 622/706 (89%), Gaps = 7/706 (0%)
Query 1 MSIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVL 60
M + +PL AGLDD+QREAVLAPRGPVCVLAGAGTGKTRTITHRIA LV +GHVA GQVL
Sbjct 1 MVMVVNPLTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAHLVGAGHVATGQVL 60
Query 61 AVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQL 120
AVTFTQRAA EMRSRLRAL AA + S G V+ LTFHAAA+RQLRYFW RVI DTGWQL
Sbjct 61 AVTFTQRAAAEMRSRLRALGAAVQAVSDFGVVRVLTFHAAAHRQLRYFWPRVIGDTGWQL 120
Query 121 LDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAA 180
LDSKFA VARAAS RLHA TDDV DLAGEIEWAKASLIGPEEYV AVAA RD PLDAA
Sbjct 121 LDSKFATVARAASSVRLHAGTDDVCDLAGEIEWAKASLIGPEEYVAAVAAIGRDTPLDAA 180
Query 181 QIAAVYSEYEALKARGDGV---TLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEY 237
QIA+VY+ YEALKARG+GV TLLDFDDLLLHTAAAIENDAAVAEEF+DRYRCFVVDEY
Sbjct 181 QIASVYAAYEALKARGNGVPGVTLLDFDDLLLHTAAAIENDAAVAEEFRDRYRCFVVDEY 240
Query 238 QDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERD 297
QDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASP FLLDF RRFPDA VVRLERD
Sbjct 241 QDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPCFLLDFPRRFPDATVVRLERD 300
Query 298 YRSTPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIAR 357
YRSTPQVVSLAN+VIAAA GRVA SK +LSGQREPGP SFHE+SDEPAEAA VAASIAR
Sbjct 301 YRSTPQVVSLANQVIAAAHGRVADSKFQLSGQREPGPAASFHEYSDEPAEAAAVAASIAR 360
Query 358 LIASGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVS 417
LI GT PSE+A+LYRVNAQSE YEEALT+ GIAYQVRGGEGFFNRQEIKQALLALQR +
Sbjct 361 LIEFGTSPSEIAVLYRVNAQSEAYEEALTEVGIAYQVRGGEGFFNRQEIKQALLALQRSA 420
Query 418 ERDT----DAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQ 473
ER + ++ LSDVVR VL PLGLTA+ PVG+RAR+RWEALTALAEL DDE+AQ P L
Sbjct 421 ERSSQTEPNSPLSDVVRGVLEPLGLTAEKPVGSRARDRWEALTALAELADDEVAQHPRLD 480
Query 474 LPGLLAELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPN 533
LPGLLAELR RA+ARHPPVVQGVTLASLHA KGLEWDAVFLVGLADGTLPIS ALAHG
Sbjct 481 LPGLLAELRLRADARHPPVVQGVTLASLHAVKGLEWDAVFLVGLADGTLPISRALAHGAE 540
Query 534 SEPVEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTS 593
SEPVEEERRLLYVGITRARV+LALSWALSR+PGGRQSRKPSRFLN IAPQ +P S
Sbjct 541 SEPVEEERRLLYVGITRARVYLALSWALSRTPGGRQSRKPSRFLNDIAPQMGQNPASSRS 600
Query 594 RRNRGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYV 653
RRNR A RCRIC N+L T AAVML+RC+ CAADVDEELLLQLK+WRLSTAKEQNVPAYV
Sbjct 601 RRNRTATLRCRICKNDLTTPAAVMLQRCQICAADVDEELLLQLKAWRLSTAKEQNVPAYV 660
Query 654 VFTDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
V TDNTLIAIAELLP D+AALIA+PG+ RK+EQYGSDVLQLVR R
Sbjct 661 VLTDNTLIAIAELLPADEAALIAVPGMSVRKIEQYGSDVLQLVRCR 706
>gi|126434064|ref|YP_001069755.1| UvrD/REP helicase [Mycobacterium sp. JLS]
gi|126233864|gb|ABN97264.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. JLS]
Length=707
Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/692 (79%), Positives = 607/692 (88%), Gaps = 1/692 (0%)
Query 8 LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67
L+A LD++QREAVLAPRGPVCVLAGAGTGKTRTIT RIA LVA+GHVA GQVLAVTFT R
Sbjct 16 LLADLDEEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSR 75
Query 68 AAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAV 127
AAGEMR+RLRALD A G G G+VQA+TFHAAA RQLRYFW RV+ DT WQLLDSKF+V
Sbjct 76 AAGEMRARLRALDQEA-GGVGTGSVQAMTFHAAARRQLRYFWPRVVGDTSWQLLDSKFSV 134
Query 128 VARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYS 187
VA+AA+R R+ A+TDDVRDLAGEIEWAKASLI PE Y AVA A RD P+DAA++AAVY+
Sbjct 135 VAQAANRARVQAATDDVRDLAGEIEWAKASLISPEAYPGAVAQAGRDIPMDAAKVAAVYA 194
Query 188 EYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRV 247
YEALKAR DG LLDFDDLLLHTAAAIENDAAVA EF+DRYRCFVVDEYQDVTPLQQRV
Sbjct 195 GYEALKARHDGTALLDFDDLLLHTAAAIENDAAVAAEFRDRYRCFVVDEYQDVTPLQQRV 254
Query 248 LSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSL 307
L AWLG RDDLTVVGDANQTIYSFTGA+PR+LLDFSRRFPDAAV+RLERDYRSTPQVVSL
Sbjct 255 LDAWLGPRDDLTVVGDANQTIYSFTGATPRYLLDFSRRFPDAAVIRLERDYRSTPQVVSL 314
Query 308 ANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSE 367
ANRVIAAARGR+AGSKL L GQR PGP P+F EH DE AEAA VA I RL+ +GTP +E
Sbjct 315 ANRVIAAARGRMAGSKLHLVGQRPPGPTPAFAEHPDEVAEAAAVAKDIRRLLDAGTPAAE 374
Query 368 VAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAALSD 427
+A+LYR+NAQSEVYEEALT+AGIA+QVRGGEGFF+RQEI+QAL+ALQR +ERD D ++D
Sbjct 375 IAVLYRINAQSEVYEEALTEAGIAFQVRGGEGFFSRQEIRQALVALQRAAERDVDGEVAD 434
Query 428 VVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAEA 487
VVRAVL PLGLTA+PP GTRARERWEAL+ALAELVD+E+ RP L L GL+ ELR+RA+A
Sbjct 435 VVRAVLEPLGLTAEPPAGTRARERWEALSALAELVDEEVVLRPGLDLRGLVTELRQRADA 494
Query 488 RHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYVG 547
RHPPVVQGVTLASLHAAKGLEWDAV+LVGLADGTLPISHAL HGP+SEPVEEERRLLYVG
Sbjct 495 RHPPVVQGVTLASLHAAKGLEWDAVYLVGLADGTLPISHALTHGPDSEPVEEERRLLYVG 554
Query 548 ITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAARCRICN 607
ITRARVHL LSWAL+R+PGGRQ R+PSRFLNG+AP + + RR RGA RCR+CN
Sbjct 555 ITRARVHLTLSWALARAPGGRQGRRPSRFLNGVAPHSAPEASVNKPRRARGATPRCRVCN 614
Query 608 NELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIAELL 667
L T AA+MLRRCETC++D+DE+LL LK WRL T+KE VPA+VVFTDNTLIAIAE L
Sbjct 615 QVLTTPAAIMLRRCETCSSDIDEQLLAALKEWRLRTSKELGVPAFVVFTDNTLIAIAESL 674
Query 668 PTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
PTD+AAL+AIPGIGARKLEQYG+DVL LV R
Sbjct 675 PTDEAALVAIPGIGARKLEQYGADVLALVNAR 706
>gi|108798380|ref|YP_638577.1| UvrD/REP helicase [Mycobacterium sp. MCS]
gi|108768799|gb|ABG07521.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. MCS]
Length=714
Score = 1060 bits (2740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/692 (79%), Positives = 607/692 (88%), Gaps = 1/692 (0%)
Query 8 LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67
L+A LD++QREAVLAPRGPVCVLAGAGTGKTRTIT RIA LVA+GHVA GQVLAVTFT R
Sbjct 23 LLADLDEEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSR 82
Query 68 AAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAV 127
AAGEMR+RLRALD A G G G+VQA+TFHAAA RQLRYFW RV+ DT WQLLDSKF+V
Sbjct 83 AAGEMRARLRALDQEA-GGVGTGSVQAMTFHAAARRQLRYFWPRVVGDTSWQLLDSKFSV 141
Query 128 VARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYS 187
VA+AA+R R+ A+TDDVRDLAGEIEWAKASLI PE Y AVA A RD P+DAA++AAVY+
Sbjct 142 VAQAANRARVQAATDDVRDLAGEIEWAKASLISPEAYPGAVAQAGRDIPMDAAKVAAVYA 201
Query 188 EYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRV 247
YEALKAR DG LLDFDDLLLHTAAAIENDAAVA EF+DRYRCFVVDEYQDVTPLQQRV
Sbjct 202 GYEALKARHDGTALLDFDDLLLHTAAAIENDAAVAAEFRDRYRCFVVDEYQDVTPLQQRV 261
Query 248 LSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSL 307
L AWLG RDDLTVVGDANQTIYSFTGA+PR+LLDFSRRFPDAAV+RLERDYRSTPQVVSL
Sbjct 262 LDAWLGPRDDLTVVGDANQTIYSFTGATPRYLLDFSRRFPDAAVIRLERDYRSTPQVVSL 321
Query 308 ANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSE 367
ANRVIAAARGR+AGSKL L GQR GP P+F EH+DE AEAA VA I RL+ +GTP +E
Sbjct 322 ANRVIAAARGRMAGSKLHLVGQRPAGPTPAFAEHTDEVAEAAAVAKDIRRLLDAGTPAAE 381
Query 368 VAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAALSD 427
+A+LYR+NAQSEVYEEALT+AGIA+QVRGGEGFF+RQEI+QAL+ALQR +ERD D ++D
Sbjct 382 IAVLYRINAQSEVYEEALTEAGIAFQVRGGEGFFSRQEIRQALVALQRAAERDVDGEVAD 441
Query 428 VVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAEA 487
VVRAVL PLGLTA+PP GTRARERWEAL+ALAELVD+E+ RP L L GL+ ELR+RA+A
Sbjct 442 VVRAVLEPLGLTAEPPAGTRARERWEALSALAELVDEEVVLRPGLDLRGLVTELRQRADA 501
Query 488 RHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYVG 547
RHPPVVQGVTLASLHAAKGLEWDAV+LVGLADGTLPISHAL HGP+SEPVEEERRLLYVG
Sbjct 502 RHPPVVQGVTLASLHAAKGLEWDAVYLVGLADGTLPISHALTHGPDSEPVEEERRLLYVG 561
Query 548 ITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAARCRICN 607
ITRARVHL LSWAL+R+PGGRQ R+PSRFLNG+AP + + RR RGA RCR+CN
Sbjct 562 ITRARVHLTLSWALARAPGGRQGRRPSRFLNGVAPHSAPEASVNKPRRARGATPRCRVCN 621
Query 608 NELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIAELL 667
L T AA+MLRRCETC++D+DE+LL LK WRL T+KE VPA+VVFTDNTLIAIAE L
Sbjct 622 QVLTTPAAIMLRRCETCSSDIDEQLLAALKEWRLRTSKELGVPAFVVFTDNTLIAIAESL 681
Query 668 PTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
PTD+AAL+AIPGIGARKLEQYG+DVL LV R
Sbjct 682 PTDEAALVAIPGIGARKLEQYGADVLALVNAR 713
>gi|119867477|ref|YP_937429.1| UvrD/REP helicase [Mycobacterium sp. KMS]
gi|119693566|gb|ABL90639.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. KMS]
Length=707
Score = 1059 bits (2738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/692 (79%), Positives = 607/692 (88%), Gaps = 1/692 (0%)
Query 8 LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67
L+A LD++QREAVLAPRGPVCVLAGAGTGKTRTIT RIA LVA+GHVA GQVLAVTFT R
Sbjct 16 LLADLDEEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSR 75
Query 68 AAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAV 127
AAGEMR+RLRALD A G G G+VQA+TFHAAA RQLRYFW RV+ DT WQLLDSKF+V
Sbjct 76 AAGEMRARLRALDQEA-GGVGTGSVQAMTFHAAARRQLRYFWPRVVGDTSWQLLDSKFSV 134
Query 128 VARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYS 187
VA+AA+R R+ A+TDDVRDLAGEIEWAKASLI PE Y AVA A RD P+DAA++AAVY+
Sbjct 135 VAQAANRARVQAATDDVRDLAGEIEWAKASLISPEAYPGAVAQAGRDIPMDAAKVAAVYA 194
Query 188 EYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRV 247
YEALKAR DG LLDFDDLLLHTAAAIENDAAVA EF+DRYRCFVVDEYQDVTPLQQRV
Sbjct 195 GYEALKARHDGTALLDFDDLLLHTAAAIENDAAVAAEFRDRYRCFVVDEYQDVTPLQQRV 254
Query 248 LSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSL 307
L AWLG RDDLTVVGDANQTIYSFTGA+PR+LLDFSRRFPDAAV+RLERDYRSTPQVVSL
Sbjct 255 LDAWLGPRDDLTVVGDANQTIYSFTGATPRYLLDFSRRFPDAAVIRLERDYRSTPQVVSL 314
Query 308 ANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSE 367
ANRVIAAARGR+AGSKL L GQR GP P+F EH+DE AEAA VA I RL+ +GTP +E
Sbjct 315 ANRVIAAARGRMAGSKLHLVGQRPAGPTPAFAEHTDEVAEAAAVAKDIRRLLDAGTPAAE 374
Query 368 VAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAALSD 427
+A+LYR+NAQSEVYEEALT+AGIA+QVRGGEGFF+RQEI+QAL+ALQR +ERD D ++D
Sbjct 375 IAVLYRINAQSEVYEEALTEAGIAFQVRGGEGFFSRQEIRQALVALQRAAERDVDGEVAD 434
Query 428 VVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAEA 487
VVRAVL PLGLTA+PP GTRARERWEAL+ALAELVD+E+ RP L L GL+ ELR+RA+A
Sbjct 435 VVRAVLEPLGLTAEPPAGTRARERWEALSALAELVDEEVVLRPGLDLRGLVTELRQRADA 494
Query 488 RHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYVG 547
RHPPVVQGVTLASLHAAKGLEWDAV+LVGLADGTLPISHAL HGP+SEPVEEERRLLYVG
Sbjct 495 RHPPVVQGVTLASLHAAKGLEWDAVYLVGLADGTLPISHALTHGPDSEPVEEERRLLYVG 554
Query 548 ITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAARCRICN 607
ITRARVHL LSWAL+R+PGGRQ R+PSRFLNG+AP + + RR RGA RCR+CN
Sbjct 555 ITRARVHLTLSWALARAPGGRQGRRPSRFLNGVAPHSAPEASVNKPRRARGATPRCRVCN 614
Query 608 NELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIAELL 667
L T AA+MLRRCETC++D+DE+LL LK WRL T+KE VPA+VVFTDNTLIAIAE L
Sbjct 615 QVLTTPAAIMLRRCETCSSDIDEQLLAALKEWRLRTSKELGVPAFVVFTDNTLIAIAESL 674
Query 668 PTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
PTD+AAL+AIPGIGARKLEQYG+DVL LV R
Sbjct 675 PTDEAALVAIPGIGARKLEQYGADVLALVNAR 706
>gi|333991552|ref|YP_004524166.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium sp. JDM601]
gi|333487520|gb|AEF36912.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium sp. JDM601]
Length=713
Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/708 (78%), Positives = 607/708 (86%), Gaps = 12/708 (1%)
Query 2 SIASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLA 61
+ +D LIAGLDD+QR AVLAPRGPVCVLAGAGTGKTRTITHRIA LVA+GHVA GQVLA
Sbjct 9 GVPADGLIAGLDDEQRAAVLAPRGPVCVLAGAGTGKTRTITHRIAHLVAAGHVAPGQVLA 68
Query 62 VTFTQRAAGEMRSRLRALDAAARTGSGVGAV----QALTFHAAAYRQLRYFWSRVIADTG 117
VTFTQRAAGEMRSRLRAL +AA GVG QALTFHAAA RQLRYFW RV+ +TG
Sbjct 69 VTFTQRAAGEMRSRLRALGSAAGGEGGVGNGVGAVQALTFHAAARRQLRYFWPRVVGETG 128
Query 118 WQLLDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPL 177
W+LLD KF VVARAA L S DDVRD+AGEIEWAKASLIGPE+Y AVAAA RD P+
Sbjct 129 WELLDRKFGVVARAAGHAGLRLSNDDVRDIAGEIEWAKASLIGPEQYPEAVAAAGRDTPI 188
Query 178 DAAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEY 237
DAA++A VY+ YEALKARG+ V +LDFDDLLLHTAAAIENDAAVA EF+DRYRCFVVDEY
Sbjct 189 DAAKLADVYAGYEALKARGE-VAMLDFDDLLLHTAAAIENDAAVAAEFRDRYRCFVVDEY 247
Query 238 QDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERD 297
QDVTPLQQRVLSAWLG+RDDLTVVGDANQTIYSFTGASPR+LLDF+RRFPDAA+VRLERD
Sbjct 248 QDVTPLQQRVLSAWLGERDDLTVVGDANQTIYSFTGASPRYLLDFTRRFPDAALVRLERD 307
Query 298 YRSTPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIAR 357
YRSTP+VVSLANRVIAAARGRVAGSKL+L GQREPGP+P+F EH DE AEA VA SIAR
Sbjct 308 YRSTPEVVSLANRVIAAARGRVAGSKLKLVGQREPGPLPTFREHPDEVAEATAVAKSIAR 367
Query 358 LIASGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVS 417
LI G P+E+A+LYRVNAQSEVYEEALT+AGIAYQVRGGEGFF+RQEI+QAL+AL+R +
Sbjct 368 LIDGGVAPAEIAVLYRVNAQSEVYEEALTEAGIAYQVRGGEGFFHRQEIRQALVALRRTA 427
Query 418 ER--DTDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLP 475
ER DT +AL + VR VL PLGLTA+PP G RARERWEAL ALAELVDDE+AQRP L LP
Sbjct 428 ERGDDTGSALPETVRRVLEPLGLTAEPPSGVRARERWEALGALAELVDDEVAQRPDLDLP 487
Query 476 GLLAELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSE 535
GLLAELR RA++RHPP VQGVTLASLHAAKGLEWDAVFLVGL DGTLPISHALAHGP+SE
Sbjct 488 GLLAELRVRADSRHPPTVQGVTLASLHAAKGLEWDAVFLVGLVDGTLPISHALAHGPDSE 547
Query 536 PVEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGI---APQTRADPVPGT 592
VEEERRLLYVG+TRARVHLALSWAL+R+PGGR RKPSRFL+GI PQ
Sbjct 548 AVEEERRLLYVGVTRARVHLALSWALARAPGGRAGRKPSRFLHGIDGAVPQPDPRAP--A 605
Query 593 SRRNRGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAY 652
RR RGA CR+CN L T AA+ML RCETCAADVD ELL+ LK WRL TA E VPAY
Sbjct 606 RRRARGAPKHCRVCNKALGTPAAIMLSRCETCAADVDTELLVALKDWRLRTATELKVPAY 665
Query 653 VVFTDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
+VF+DNTL AIAE+LP D+AAL+AIPGIGARKLEQ+GSDVL+LVR R+
Sbjct 666 IVFSDNTLTAIAEMLPADEAALVAIPGIGARKLEQFGSDVLELVRNRS 713
>gi|118469673|ref|YP_886318.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|118170960|gb|ABK71856.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2
155]
Length=716
Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/698 (78%), Positives = 602/698 (87%), Gaps = 4/698 (0%)
Query 4 ASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVT 63
A P + LDD+QREAVLAPRGPVCVLAGAGTGKTRTIT RIA LVA GHVAAGQVLAVT
Sbjct 15 APSPTLEDLDDEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAGGHVAAGQVLAVT 74
Query 64 FTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDS 123
FT RAAGEMR+RLRAL +TG GAVQA+TFHAAA RQL+YFW R++ DTGW+LLDS
Sbjct 75 FTARAAGEMRARLRAL--GQQTGVPTGAVQAVTFHAAARRQLQYFWPRLVGDTGWELLDS 132
Query 124 KFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIA 183
KF+VVA+AA+R L STDDVRDLAGEIEWAKASLI PE Y AVA RD PLDA ++A
Sbjct 133 KFSVVAQAANRAGLQPSTDDVRDLAGEIEWAKASLITPEAYGAAVAKVGRDIPLDAQKVA 192
Query 184 AVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPL 243
AVYS YEALKAR DG LLDFDDLLLHTAAAIENDAAVA+EF+DRYRCFVVDEYQDVTPL
Sbjct 193 AVYSGYEALKARRDGSALLDFDDLLLHTAAAIENDAAVAQEFRDRYRCFVVDEYQDVTPL 252
Query 244 QQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQ 303
QQRVL AWLGDRDDLTVVGDANQTIYSFTGA+PR+LLDFSRRFPDAAVVRLERDYRSTPQ
Sbjct 253 QQRVLDAWLGDRDDLTVVGDANQTIYSFTGATPRYLLDFSRRFPDAAVVRLERDYRSTPQ 312
Query 304 VVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGT 363
VVSLANRVIA ARGR+AGSKL L GQR+PGP P+F+E+ DE AEA VA +I +LI GT
Sbjct 313 VVSLANRVIAGARGRMAGSKLHLVGQRDPGPKPTFNEYPDEVAEAKGVAKAIQKLIEKGT 372
Query 364 PPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDA 423
P+E+A+LYR+NAQSEVYEEALT+AGIA+QVRGGEGFF+RQEI+QAL+ALQR +ER+ +
Sbjct 373 APAEIAVLYRINAQSEVYEEALTEAGIAFQVRGGEGFFSRQEIRQALVALQRAAEREVEI 432
Query 424 A-LSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELR 482
L VR +L PLGLTA+ P GTRARERWEAL ALAELV++E+A RP L L L+ ELR
Sbjct 433 TDLPVFVRELLEPLGLTAEAPAGTRARERWEALVALAELVEEEVALRPELDLRALVGELR 492
Query 483 RRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERR 542
+RA+ARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHAL+HGP+SEPVEEERR
Sbjct 493 QRADARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALSHGPDSEPVEEERR 552
Query 543 LLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQT-RADPVPGTSRRNRGAAA 601
LLYVG+TRARVHLALSWAL+R+PGGRQ R+PSRFLNGIAPQT + P RR RG A
Sbjct 553 LLYVGVTRARVHLALSWALARTPGGRQGRRPSRFLNGIAPQTENSSSGPDRPRRQRGPAP 612
Query 602 RCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLI 661
RCRICN L+T A+MLRRCETC +++DE+LL +LK WRL +KE VPAYVVFTD TL+
Sbjct 613 RCRICNAALSTPQAIMLRRCETCPSNLDEDLLAELKEWRLRVSKEMKVPAYVVFTDTTLM 672
Query 662 AIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
AIAE LPTDDAAL+AIPGIGARKLEQYG DV+ LVRGR
Sbjct 673 AIAETLPTDDAALVAIPGIGARKLEQYGEDVVALVRGR 710
>gi|120402806|ref|YP_952635.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
gi|119955624|gb|ABM12629.1| ATP-dependent DNA helicase, Rep family [Mycobacterium vanbaalenii
PYR-1]
Length=710
Score = 1047 bits (2708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/697 (78%), Positives = 595/697 (86%), Gaps = 4/697 (0%)
Query 6 DPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFT 65
D L+ LDD+QREAVLAPRGPVCVLAGAGTGKTRTIT RIA LV +GHVA GQVLAVTFT
Sbjct 12 DRLLGDLDDEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFT 71
Query 66 QRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKF 125
QRAAGEMR RLRAL G+ AVQA TFHAAA RQL YFW RV+ T WQL+DSKF
Sbjct 72 QRAAGEMRGRLRAL-GGDEAGASTAAVQAQTFHAAARRQLSYFWPRVVGTTDWQLMDSKF 130
Query 126 AVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAV 185
AVVA+AA+R L TD+VRDLAGEIEWAKASLI PE Y AVA RD P DAA++AAV
Sbjct 131 AVVAQAANRAGLPTGTDNVRDLAGEIEWAKASLITPEGYPQAVADVGRDIPFDAAKVAAV 190
Query 186 YSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQ 245
Y YE+LK+R + V LLDFDDLLLHTAAAIEND AVA+EF+DRYRCFVVDEYQDVTPLQQ
Sbjct 191 YGNYESLKSRRNDVMLLDFDDLLLHTAAAIENDPAVAQEFRDRYRCFVVDEYQDVTPLQQ 250
Query 246 RVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVV 305
RVL AWLG RDDLTVVGDANQTIYSFTGASPR+LLDFSRRFPDAAVVRLERDYRSTPQVV
Sbjct 251 RVLDAWLGGRDDLTVVGDANQTIYSFTGASPRYLLDFSRRFPDAAVVRLERDYRSTPQVV 310
Query 306 SLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPP 365
SLANRVIAAARGR+AGS+L L GQR PGP P F E+ DE AEA VA SIA+L+ SGT
Sbjct 311 SLANRVIAAARGRMAGSRLHLVGQRPPGPDPVFKEYPDEVAEATAVARSIAKLVESGTAA 370
Query 366 SEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER---DTD 422
SE+A+LYR+NAQSEVYEEALT+AGIA+QVRGGEGFF+RQEI+QALLALQR++ER DT
Sbjct 371 SEIAVLYRINAQSEVYEEALTEAGIAFQVRGGEGFFSRQEIRQALLALQRLAERGLQDTA 430
Query 423 AALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELR 482
+L + VRA L PLGLTA+PP G +AR+RWEAL ALAELVDDE+AQRP L L GLLAELR
Sbjct 431 DSLPEFVRAALEPLGLTAEPPPGAQARDRWEALVALAELVDDEVAQRPQLDLHGLLAELR 490
Query 483 RRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERR 542
+RA++RHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGP+SEPVEEERR
Sbjct 491 QRADSRHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPDSEPVEEERR 550
Query 543 LLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAAR 602
LLYVG+TRARVHL LSWAL+R PGGRQ R+PSRFLNGIAPQ++ D P R+ RG A R
Sbjct 551 LLYVGVTRARVHLTLSWALARKPGGRQGRRPSRFLNGIAPQSQRDDGPSKPRKPRGPAPR 610
Query 603 CRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIA 662
CR+CN L + A+MLRRCETC +D+DE+LL LK WRL AKE NVPAYVVFTDNTLIA
Sbjct 611 CRVCNAALTSPPAIMLRRCETCPSDIDEQLLADLKDWRLRIAKEMNVPAYVVFTDNTLIA 670
Query 663 IAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
IAE LP+DDAAL+AIPGIGARKLEQ+G DVL LV+GR
Sbjct 671 IAESLPSDDAALVAIPGIGARKLEQFGPDVLALVKGR 707
>gi|315445535|ref|YP_004078414.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
gi|315263838|gb|ADU00580.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
Length=707
Score = 1040 bits (2689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/697 (77%), Positives = 598/697 (86%), Gaps = 7/697 (1%)
Query 6 DPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFT 65
D L+ LDD+QREAVLAPRGPVCVLAGAGTGKTRTIT RIA LV +GHVA GQVLAVTFT
Sbjct 12 DRLLGDLDDEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFT 71
Query 66 QRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKF 125
QRAAGEMR RLRALD GSG G VQA TFHAAA RQL YFW RV+ +T WQL+DSKF
Sbjct 72 QRAAGEMRGRLRALD----EGSGTGGVQAQTFHAAARRQLSYFWPRVVGNTEWQLMDSKF 127
Query 126 AVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAV 185
AVVA+AA+R L TD+VRDLAGEIEWAKASLI PE Y AVA RD P DAA+IA V
Sbjct 128 AVVAQAANRGGLPTGTDNVRDLAGEIEWAKASLISPETYADAVAEVSRDIPFDAAKIATV 187
Query 186 YSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQ 245
Y+ YEALK R +G+ LLDFDDLLLHTAAAIEND AVA+EF+DRYRCFVVDEYQDVTPLQQ
Sbjct 188 YANYEALKTRNEGLVLLDFDDLLLHTAAAIENDPAVAQEFRDRYRCFVVDEYQDVTPLQQ 247
Query 246 RVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVV 305
RVL AWLG+RDDLTVVGDANQTIYSFTGASPR+LLDFSRRFP+ +VRLERDYRSTPQVV
Sbjct 248 RVLDAWLGNRDDLTVVGDANQTIYSFTGASPRYLLDFSRRFPEVTLVRLERDYRSTPQVV 307
Query 306 SLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPP 365
SLANRVIA ARGR+AGS+L L GQR PGP P F E+ DE AEAA VA SI LI SGT
Sbjct 308 SLANRVIAGARGRMAGSRLHLVGQRPPGPEPVFKEYPDEVAEAAAVAKSIRTLIESGTAA 367
Query 366 SEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER---DTD 422
SE+A+LYR+NAQSEVYEEALT+AG+A+QVRGGEGFF+RQEI+QALLALQRV+ER DT
Sbjct 368 SEIAVLYRINAQSEVYEEALTEAGVAFQVRGGEGFFSRQEIRQALLALQRVAERGAGDTG 427
Query 423 AALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELR 482
+L ++VRA+L PLGLTA+PP GTRAR+RWEAL ALAELVDDE+AQRP L L LL ELR
Sbjct 428 GSLPEIVRAILEPLGLTAEPPAGTRARDRWEALVALAELVDDEVAQRPHLDLRALLTELR 487
Query 483 RRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERR 542
+RA++RHPPVVQGVTLASLHAAKGLEWDAV+LVGLADGTLPISHAL+HGP+SEPVEEERR
Sbjct 488 QRADSRHPPVVQGVTLASLHAAKGLEWDAVYLVGLADGTLPISHALSHGPDSEPVEEERR 547
Query 543 LLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAAR 602
LLYVG+TRARVHL LSWAL+R PGGRQ R+PSRFL GIAPQ++ D P SR+ RG A R
Sbjct 548 LLYVGVTRARVHLTLSWALARKPGGRQGRRPSRFLTGIAPQSQRDDGPSRSRKPRGPAPR 607
Query 603 CRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIA 662
CR+CN +L + A+MLRRCE+C +D+D+ELL +LK WRL +KE +VPA+VVFTDNTLIA
Sbjct 608 CRVCNAQLTSPTAIMLRRCESCPSDIDDELLAELKDWRLRISKEMSVPAFVVFTDNTLIA 667
Query 663 IAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
IAE +PTDDAAL+AIPGIGARKLEQYG DVL LV+GR
Sbjct 668 IAESMPTDDAALVAIPGIGARKLEQYGPDVLALVKGR 704
>gi|145225238|ref|YP_001135916.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
gi|145217724|gb|ABP47128.1| ATP-dependent DNA helicase, Rep family [Mycobacterium gilvum
PYR-GCK]
Length=707
Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/697 (77%), Positives = 597/697 (86%), Gaps = 7/697 (1%)
Query 6 DPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFT 65
D L+ LDD+QREAVLAPRGPVCVLAGAGTGKTRTIT RIA LV +GHVA GQVLAVTFT
Sbjct 12 DRLLGDLDDEQREAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFT 71
Query 66 QRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKF 125
QRAAGEMR RLRALD GSG G VQA TFHAAA RQL YFW RV+ +T WQL+DSKF
Sbjct 72 QRAAGEMRGRLRALD----EGSGTGGVQAQTFHAAARRQLSYFWPRVVGNTEWQLMDSKF 127
Query 126 AVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAV 185
AVVA+AA+R L TD+VRDLAGEIEWAKASLI PE Y AVA RD P DAA+IA V
Sbjct 128 AVVAQAANRGGLPTGTDNVRDLAGEIEWAKASLISPETYADAVAEVSRDIPFDAAKIATV 187
Query 186 YSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQ 245
Y+ YEALK R +G+ LLDFDDLLLHTAAAIEND AVA+EF+DRYRCFVVDEYQDVTPLQQ
Sbjct 188 YANYEALKTRNEGLVLLDFDDLLLHTAAAIENDPAVAQEFRDRYRCFVVDEYQDVTPLQQ 247
Query 246 RVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVV 305
RVL AWLG+RDDLTVVGDANQTIYSFTGASPR+LLDFSRRFP+ +VRLERDYRSTPQVV
Sbjct 248 RVLDAWLGNRDDLTVVGDANQTIYSFTGASPRYLLDFSRRFPEVTLVRLERDYRSTPQVV 307
Query 306 SLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPP 365
SLANRVIA ARGR+AGS+L L GQR PGP P F E+ DE AEAA VA SI LI SGT
Sbjct 308 SLANRVIAGARGRMAGSRLHLVGQRPPGPEPVFKEYPDEVAEAAAVAKSIRTLIESGTAA 367
Query 366 SEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER---DTD 422
SE+A+LYR+NAQSEVYEEALT+AG+A+QVRGGEGFF+RQEI+QALLALQRV+ER DT
Sbjct 368 SEIAVLYRINAQSEVYEEALTEAGVAFQVRGGEGFFSRQEIRQALLALQRVAERGAGDTG 427
Query 423 AALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELR 482
+L ++VRA+L PLGLTA+PP GTRAR+RWEAL ALAELVDDE+AQRP L L LL ELR
Sbjct 428 GSLPEIVRAILEPLGLTAEPPAGTRARDRWEALVALAELVDDEVAQRPHLDLRALLTELR 487
Query 483 RRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERR 542
+RA++RHPPVVQGVTLASLHAAKGLEWDAV+LVGLADGTLPISHAL+HGP+SEPVEEERR
Sbjct 488 QRADSRHPPVVQGVTLASLHAAKGLEWDAVYLVGLADGTLPISHALSHGPDSEPVEEERR 547
Query 543 LLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAAR 602
LLYVG+TRARVHL LSWAL+R PGGRQ R+PSRFL GIAPQ++ D P SR+ RG A R
Sbjct 548 LLYVGVTRARVHLTLSWALARKPGGRQGRRPSRFLTGIAPQSQRDDGPSRSRKPRGPAPR 607
Query 603 CRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIA 662
CR+CN +L + A+MLRRCE+C +D+D+ELL +LK WRL +KE +VPA+VVFTDNTLIA
Sbjct 608 CRVCNAQLTSPTAIMLRRCESCPSDIDDELLAELKDWRLRISKEMSVPAFVVFTDNTLIA 667
Query 663 IAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
IAE +PTDDA L+AIPGIGARKLEQYG DVL LV+GR
Sbjct 668 IAESMPTDDAGLVAIPGIGARKLEQYGPDVLALVKGR 704
>gi|169630592|ref|YP_001704241.1| DNA helicase II [Mycobacterium abscessus ATCC 19977]
gi|169242559|emb|CAM63587.1| Probable DNA helicase II homolog UvrD2 [Mycobacterium abscessus]
Length=689
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/696 (74%), Positives = 576/696 (83%), Gaps = 15/696 (2%)
Query 8 LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67
L+ GLDD+QR AV APRGPVCVLAGAGTGKTRTITHRIA LVASGHVAAGQ+LAVTFTQR
Sbjct 5 LLDGLDDEQRAAVTAPRGPVCVLAGAGTGKTRTITHRIAYLVASGHVAAGQILAVTFTQR 64
Query 68 AAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAV 127
AAGEMR RLR L GVG+ QA+TFHAA RQLRYFW +++ DT W+L+DSKF +
Sbjct 65 AAGEMRGRLRDL--------GVGSAQAVTFHAAGLRQLRYFWPQLVGDTRWELIDSKFTL 116
Query 128 VARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYS 187
VA+AA+R ++ +TD VRDLAGEIEWAKASLI PE Y A A RD P+ A Q+A VY+
Sbjct 117 VAQAANRAKVSTTTDTVRDLAGEIEWAKASLISPETYPAAAAKFGRDAPVPAEQVAKVYA 176
Query 188 EYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRV 247
YE LKAR DG TLLDFDDLLLHTAAAIEN AAVAEEF+DRYRCFVVDEYQDVTPLQQRV
Sbjct 177 GYEKLKARPDGSTLLDFDDLLLHTAAAIENSAAVAEEFRDRYRCFVVDEYQDVTPLQQRV 236
Query 248 LSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSL 307
L AWLG RDD+TVVGDANQTIYSFTGA+P++LL FSRRFPDA VVRLERDYRSTPQVVSL
Sbjct 237 LDAWLGPRDDVTVVGDANQTIYSFTGATPQYLLGFSRRFPDATVVRLERDYRSTPQVVSL 296
Query 308 ANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSE 367
ANR+I+AA+GRVAGSKL+L GQR GP P F EH DE AEA +VA SIA LI SGTP SE
Sbjct 297 ANRLISAAQGRVAGSKLQLIGQRPQGPAPRFSEHDDEAAEAKSVAKSIAALIESGTPASE 356
Query 368 VAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER-DTDAALS 426
VA+LYR+NAQSEVYEEALT+AGI +QVRGGEGFF RQE++QAL+ALQR + R D +
Sbjct 357 VAVLYRINAQSEVYEEALTEAGIPFQVRGGEGFFTRQEVRQALVALQRAAGREDAGMPVP 416
Query 427 DVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAE 486
+ VR +L PLGL+ + P GT+ARERWE+L AL EL D+E A++P L LPGL+ ELR RAE
Sbjct 417 EQVREILEPLGLSQEEPHGTQARERWESLRALVELADEECARQPELDLPGLVRELRVRAE 476
Query 487 ARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYV 546
ARHPP VQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHAL+ + EPVEEERRLLYV
Sbjct 477 ARHPPTVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALSRAGDIEPVEEERRLLYV 536
Query 547 GITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAP--QTRADPVPGTSRRNRGAAARCR 604
GITRARVHL LSWALSR+ GGR+SRK SRFLNGIAP Q A P ARCR
Sbjct 537 GITRARVHLNLSWALSRAAGGRKSRKHSRFLNGIAPTAQLPASATPRRRG----GGARCR 592
Query 605 ICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIA 664
+CN L+T AAV+LRRCE+C +D+DEELL+ LK WRL TAKE VPA+VVFTDNTLIAIA
Sbjct 593 VCNAALSTPAAVLLRRCESCPSDIDEELLVALKDWRLKTAKEMKVPAFVVFTDNTLIAIA 652
Query 665 ELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGRT 700
ELLP DDAAL+AIPGIGARKLEQYG DVL+LVR R+
Sbjct 653 ELLPGDDAALVAIPGIGARKLEQYGPDVLRLVRARS 688
>gi|111023344|ref|YP_706316.1| helicase [Rhodococcus jostii RHA1]
gi|110822874|gb|ABG98158.1| helicase [Rhodococcus jostii RHA1]
Length=712
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/701 (68%), Positives = 544/701 (78%), Gaps = 22/701 (3%)
Query 11 GLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAG 70
GLD +Q AVLAPRGPVCVLAGAGTGKTRTIT RIA LVASGHVAAGQVLAVTFT RAAG
Sbjct 17 GLDPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVASGHVAAGQVLAVTFTARAAG 76
Query 71 EMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVVAR 130
EMR RLR+L G G VQA TFHAAA RQLRYFW +VI DT W+LLD KFAVV+
Sbjct 77 EMRGRLRSLG----IGDGGAQVQARTFHAAALRQLRYFWPQVIGDTEWRLLDRKFAVVSS 132
Query 131 AASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSEYE 190
AA R L ST+ VRDLA EIEWAKASLI PE+Y AVA RR+ P+DAA++A VY YE
Sbjct 133 AAGRVGLSTSTESVRDLASEIEWAKASLIAPEDYPRAVAKLRREAPVDAAKVAEVYHGYE 192
Query 191 ALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLSA 250
LKARG LLDFDDLLLHTAAA+E +AVAEEF+DRYRCFVVDEYQDVTPLQQRVL A
Sbjct 193 QLKARGQDGMLLDFDDLLLHTAAALEEHSAVAEEFRDRYRCFVVDEYQDVTPLQQRVLDA 252
Query 251 WLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANR 310
WLG+RDDLTVVGDANQTIYSFTGA+P +LLDFSRRFP+A VVRLERDYRSTP+VVS+ANR
Sbjct 253 WLGERDDLTVVGDANQTIYSFTGATPNYLLDFSRRFPEATVVRLERDYRSTPEVVSMANR 312
Query 311 VIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEVAI 370
VI AARGR+AG++L+L GQR+ GP PSF E DEPAEAA VA +I RLIASGTP +E+A+
Sbjct 313 VIGAARGRIAGTRLQLIGQRDSGPEPSFVEFDDEPAEAAGVARTIKRLIASGTPAAEIAV 372
Query 371 LYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD-----TDAAL 425
LYR+NAQSEV+E+ALT+ I YQVRGGEGFF R E++QA+ AL++ + RD A L
Sbjct 373 LYRINAQSEVHEQALTKLDIPYQVRGGEGFFTRTEVRQAVAALRQAAGRDDLPDAVGADL 432
Query 426 SDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRA 485
+VRAVL PLGLT P G +ARERW +L+AL L +++L Q P L L LL EL RA
Sbjct 433 VTLVRAVLVPLGLTDAEPAGAQARERWSSLSALVALTEEQLTQDPELTLDALLRELSLRA 492
Query 486 EARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALA---HGPNSEPVEEERR 542
EARHPPVVQGVTLASLHAAKGLEWDAVFLVGL DGTLPI H L P+ VEEERR
Sbjct 493 EARHPPVVQGVTLASLHAAKGLEWDAVFLVGLTDGTLPIQHVLGDSNSAPDEAAVEEERR 552
Query 543 LLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTR-----ADPVPGTSRRNR 597
LLYVG+TRAR HL +SWALSR+ GGR+SR+ SRFL+G+ P+ A P T +R
Sbjct 553 LLYVGVTRAREHLQMSWALSRNEGGRKSRRRSRFLHGLIPEDSPASRIAAPAKSTKKR-- 610
Query 598 GAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTD 657
RCR+C +L + A ML RCE C ++VD ELL L+SWRL ++E VPAYVVF+D
Sbjct 611 ---PRCRLCGKQLIGTTATMLGRCEGCPSNVDVELLESLRSWRLEKSRELKVPAYVVFSD 667
Query 658 NTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
NTL A+AE P DD L+AIPGIGA+KLEQ+G DVL +++G
Sbjct 668 NTLTALAEQRPQDDRGLVAIPGIGAKKLEQFGEDVLGVIKG 708
>gi|226365852|ref|YP_002783635.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus opacus B4]
gi|226244342|dbj|BAH54690.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus opacus B4]
Length=708
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/708 (67%), Positives = 546/708 (78%), Gaps = 22/708 (3%)
Query 4 ASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVT 63
A++ GLD +Q AVLAPRGPVCVLAGAGTGKTRTIT RIA LVASGHVAAGQVLAVT
Sbjct 6 AAEVTTTGLDPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVASGHVAAGQVLAVT 65
Query 64 FTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDS 123
FT RAAGEMR RLR+L G G VQA TFHAAA RQLRYFW +V+ DT W+LLD
Sbjct 66 FTARAAGEMRGRLRSLG----IGDGGAQVQARTFHAAALRQLRYFWPQVVGDTEWRLLDR 121
Query 124 KFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIA 183
KFAVV+ AA R L ST+ +RDLA EIEWAKASLI PE+Y AVA RR+ P+DAA++A
Sbjct 122 KFAVVSSAAGRVGLSTSTESIRDLASEIEWAKASLIAPEDYPRAVAKLRREAPVDAAKVA 181
Query 184 AVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPL 243
VY YE LKARG LLDFDDLLLHTAAA+E +AVAEEF+DRYRCFVVDEYQDVTPL
Sbjct 182 EVYHGYEQLKARGQDGMLLDFDDLLLHTAAALEEHSAVAEEFRDRYRCFVVDEYQDVTPL 241
Query 244 QQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQ 303
QQRVL AWLG+RDDLTVVGDANQTIYSFTGA+P +LLDFSRRFP+A VVRLERDYRSTP+
Sbjct 242 QQRVLDAWLGERDDLTVVGDANQTIYSFTGATPNYLLDFSRRFPEATVVRLERDYRSTPE 301
Query 304 VVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGT 363
VVS+ANRVI AARGR+AG++L+L GQR+ GP PSF E DEPAEAA VA +I RLIASGT
Sbjct 302 VVSMANRVIGAARGRIAGTRLQLIGQRDSGPEPSFVEFDDEPAEAAGVARTIKRLIASGT 361
Query 364 PPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD--- 420
P +E+A+LYR+NAQSEV+E+ALT+ I YQVRGGEGFF R E++QA+ AL++ + RD
Sbjct 362 PAAEIAVLYRINAQSEVHEQALTKLDIPYQVRGGEGFFTRTEVRQAVAALRQAAGRDDLP 421
Query 421 --TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLL 478
A L +VRAVL PLGLT P G +ARERW +L+AL L +++L Q P L L LL
Sbjct 422 DAVGADLVTLVRAVLVPLGLTDAEPAGAQARERWASLSALVALTEEQLTQDPELTLDALL 481
Query 479 AELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALA---HGPNSE 535
EL RAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGL DGTLPI H L P+
Sbjct 482 RELSLRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLTDGTLPIQHVLGDSNSAPDEA 541
Query 536 PVEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTR-----ADPVP 590
VEEERRLLYVG+TRAR HL +SWALSR+ GGR+SR+ SRFL+G+ P+ A PV
Sbjct 542 AVEEERRLLYVGVTRAREHLQMSWALSRNEGGRKSRRRSRFLHGLIPEDSPASRIAAPVK 601
Query 591 GTSRRNRGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVP 650
+R RCR+C L + A ML RCE C ++VD ELL L+SWRL ++E VP
Sbjct 602 SNKKR-----PRCRLCGKPLIGTTATMLGRCEGCPSNVDVELLDSLRSWRLEKSRELKVP 656
Query 651 AYVVFTDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
AYVVF+DNTL A+AE P DD L+AIPGIGA+KLEQ+G DVL +++G
Sbjct 657 AYVVFSDNTLTALAEQRPQDDRGLVAIPGIGAKKLEQFGEDVLGVIKG 704
>gi|226305711|ref|YP_002765671.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus erythropolis PR4]
gi|226184828|dbj|BAH32932.1| probable ATP-dependent DNA helicase UvrD2 [Rhodococcus erythropolis
PR4]
Length=718
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/707 (66%), Positives = 543/707 (77%), Gaps = 24/707 (3%)
Query 7 PLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQ 66
P GLD +Q AVLAPRGPVCVLAGAGTGKTRTIT RIA LVA GHV+AGQVLAVTFT
Sbjct 12 PADTGLDPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVADGHVSAGQVLAVTFTA 71
Query 67 RAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFA 126
RAAGEMR RLR L GSG VQA TFHAAA RQL+YFW +VI DT W+LLD KFA
Sbjct 72 RAAGEMRGRLRELGVG---GSG-PQVQARTFHAAALRQLKYFWPQVIGDTPWRLLDRKFA 127
Query 127 VVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVY 186
VV+ AA+R L ST+ VRDLA EIEW+KASLI PE+Y A+A RR+ P+DA ++A VY
Sbjct 128 VVSSAAARVGLSTSTESVRDLASEIEWSKASLIAPEDYPRAIAKIRREAPVDATKVAQVY 187
Query 187 SEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQR 246
+ YE LKARG LLDFDDLLLHTAAA+E + VA+EF++RYRCFVVDEYQDVTPLQQR
Sbjct 188 AAYEELKARGQDGMLLDFDDLLLHTAAALEEHSTVADEFRERYRCFVVDEYQDVTPLQQR 247
Query 247 VLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVS 306
VL AWLGDRDDLTVVGDANQTIYSFTGA+P +LLDFSR+FP+A VVRLERDYRSTP+VVS
Sbjct 248 VLDAWLGDRDDLTVVGDANQTIYSFTGATPNYLLDFSRKFPEATVVRLERDYRSTPEVVS 307
Query 307 LANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPS 366
LANRVI AARGR+AG++L+L GQR PGP P F E DEPAEA VA +I RLIA+GTP +
Sbjct 308 LANRVIGAARGRIAGTRLQLIGQRAPGPEPEFMEFDDEPAEALGVARAIKRLIAAGTPAA 367
Query 367 EVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER------- 419
E+A+LYR+NAQSE +E+ALT+ GI +QVRGGEGFF R E++QA+ AL++ + R
Sbjct 368 EIAVLYRINAQSEAHEQALTKLGIPFQVRGGEGFFTRTEVRQAVAALRQAAGRDDLPEGA 427
Query 420 DTDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLA 479
D AL +VRAVLAPLGLT + P GT+ARERW +L+AL L +++L P L L GLL
Sbjct 428 DNGEALVSLVRAVLAPLGLTNEEPSGTQARERWASLSALVALTEEQLVHEPELSLTGLLQ 487
Query 480 ELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALA---HGPNSEP 536
EL RAEARHPP VQGVTLASLHAAKGLEWDAVFLVGL DGTLPI H L G +
Sbjct 488 ELTARAEARHPPTVQGVTLASLHAAKGLEWDAVFLVGLNDGTLPIQHVLGDANSGADDVA 547
Query 537 VEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTR-----ADPVPG 591
VEEERRLLYVG+TRAR HL LSWAL+R+ GGR+SR+ SRFLNG+ P+ A P G
Sbjct 548 VEEERRLLYVGVTRAREHLQLSWALARNEGGRKSRRRSRFLNGLIPEDSPASRVAAPSSG 607
Query 592 TSRRNRGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPA 651
+R RCR+C L ++A ML RCE C ++VD ELL LK+WRL ++E VPA
Sbjct 608 NKKR-----PRCRVCGKPLIGTSATMLGRCEKCPSNVDLELLEHLKAWRLDKSRELKVPA 662
Query 652 YVVFTDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
YVVF+DNTL+AIAE P D+ L++IPGIG +KL+ +G DVL ++RG
Sbjct 663 YVVFSDNTLMAIAEQRPQDNRGLVSIPGIGPKKLDNFGEDVLAVIRG 709
>gi|229490963|ref|ZP_04384796.1| ATP-dependent DNA helicase [Rhodococcus erythropolis SK121]
gi|229322079|gb|EEN87867.1| ATP-dependent DNA helicase [Rhodococcus erythropolis SK121]
Length=712
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/707 (66%), Positives = 543/707 (77%), Gaps = 24/707 (3%)
Query 7 PLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQ 66
P GLD +Q AVLAPRGPVCVLAGAGTGKTRTIT RIA LVA GHV+AGQVLAVTFT
Sbjct 6 PADTGLDPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVADGHVSAGQVLAVTFTA 65
Query 67 RAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFA 126
RAAGEMR RLR L GSG VQA TFHAAA RQL+YFW +V+ DT W+LLD KFA
Sbjct 66 RAAGEMRGRLRELGVG---GSG-PQVQARTFHAAALRQLKYFWPQVVGDTPWRLLDRKFA 121
Query 127 VVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVY 186
VV+ AA+R L ST+ VRDLA EIEW+KASLI PE+Y A+A RR+ P+DA ++A VY
Sbjct 122 VVSSAAARVGLSTSTESVRDLASEIEWSKASLIAPEDYPRAIAKIRREAPVDATKVAQVY 181
Query 187 SEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQR 246
+ YE LKARG LLDFDDLLLHTAAA+E + VA+EF++RYRCFVVDEYQDVTPLQQR
Sbjct 182 AAYEELKARGQDGMLLDFDDLLLHTAAALEEHSTVADEFRERYRCFVVDEYQDVTPLQQR 241
Query 247 VLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVS 306
VL AWLGDRDDLTVVGDANQTIYSFTGA+P +LLDFSR+FP+A VVRLERDYRSTP+VVS
Sbjct 242 VLDAWLGDRDDLTVVGDANQTIYSFTGATPNYLLDFSRKFPEATVVRLERDYRSTPEVVS 301
Query 307 LANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPS 366
LANRVI AARGR+AG++L+L GQR PGP P F E DEPAEA VA +I RLIA+GTP +
Sbjct 302 LANRVIGAARGRIAGTRLQLIGQRAPGPEPEFMEFDDEPAEALGVARAIKRLIAAGTPAA 361
Query 367 EVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER------- 419
E+A+LYR+NAQSE +E+ALT+ GI +QVRGGEGFF R E++QA+ AL++ + R
Sbjct 362 EIAVLYRINAQSEAHEQALTKLGIPFQVRGGEGFFTRTEVRQAVAALRQAAGRDDLPEGA 421
Query 420 DTDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLA 479
D AL +VRAVLAPLGLT + P GT+ARERW +L+AL L +++L P L L GLL
Sbjct 422 DNGEALVSLVRAVLAPLGLTNEEPSGTQARERWASLSALVALTEEQLVHEPELTLTGLLQ 481
Query 480 ELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALA---HGPNSEP 536
EL RAEARHPP VQGVTLASLHAAKGLEWDAVFLVGL DGTLPI H L G +
Sbjct 482 ELTARAEARHPPTVQGVTLASLHAAKGLEWDAVFLVGLNDGTLPIQHVLGDANSGADDVA 541
Query 537 VEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTR-----ADPVPG 591
VEEERRLLYVG+TRAR HL LSWAL+R+ GGR+SR+ SRFLNG+ P+ A P G
Sbjct 542 VEEERRLLYVGVTRAREHLQLSWALARNEGGRKSRRRSRFLNGLIPEDSPASRVAAPSSG 601
Query 592 TSRRNRGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPA 651
+R RCR+C L ++A ML RCE C ++VD ELL LK+WRL ++E VPA
Sbjct 602 NKKR-----PRCRVCGKPLIGTSATMLGRCEKCPSNVDLELLEHLKAWRLDKSRELKVPA 656
Query 652 YVVFTDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
YVVF+DNTL+AIAE P D+ L++IPGIG +KL+ +G DVL ++RG
Sbjct 657 YVVFSDNTLMAIAEQRPQDNRGLVSIPGIGPKKLDNFGEDVLAVIRG 703
>gi|331694979|ref|YP_004331218.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
gi|326949668|gb|AEA23365.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
Length=682
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/700 (65%), Positives = 525/700 (75%), Gaps = 22/700 (3%)
Query 3 IASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAV 62
+ +DPL LD++Q AV APRGPVCVLAGAGTGKTRTIT RIA LVA+GHVA GQVLAV
Sbjct 1 MTADPL-HDLDEEQLAAVTAPRGPVCVLAGAGTGKTRTITRRIAHLVATGHVAPGQVLAV 59
Query 63 TFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLD 122
TFT RAAGE+R+RLRAL AA VQA TFHAAA RQLRYFW +V+ D WQLL+
Sbjct 60 TFTARAAGELRTRLRALGAAG--------VQARTFHAAALRQLRYFWPQVVGDRQWQLLE 111
Query 123 SKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQI 182
KF V +AA R R D VRDLA EIEWAK+SLI P EY AVA RRD P A Q+
Sbjct 112 HKFRAVGQAAVRARAGTDQDAVRDLATEIEWAKSSLITPAEYPAAVARLRRDTPGPAEQV 171
Query 183 AAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTP 242
AAVY++YE LK + + +LDFDDLLLHTAA +E+ VAEEF+DRYRCFVVDEYQDVT
Sbjct 172 AAVYAQYEELKNQAE---MLDFDDLLLHTAAILEDHVGVAEEFRDRYRCFVVDEYQDVTA 228
Query 243 LQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTP 302
LQQRVL AWLG+RDDLTVVGDANQTIY+F GA+PR LLDF RRFP+A VVRL+RDYRSTP
Sbjct 229 LQQRVLDAWLGERDDLTVVGDANQTIYTFAGATPRHLLDFPRRFPEAVVVRLQRDYRSTP 288
Query 303 QVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASG 362
QVV+ AN +I+AARGRVAGS+LRL GQ PGP P F EH DEPAEAA VA I +LIA G
Sbjct 289 QVVAAANTLISAARGRVAGSRLRLEGQLPPGPDPDFTEHDDEPAEAAAVARRIRKLIADG 348
Query 363 TPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTD 422
TP +E+A+L+R+NAQSE YE+AL +AGI +QVRGGE FF R EI++A+ L+ R D
Sbjct 349 TPAAEIAVLFRINAQSEAYEQALAEAGIPFQVRGGERFFQRPEIRRAVSVLRMAGGRAAD 408
Query 423 AALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELR 482
L VRA+LAP+GLT +PP G AR +WE+L AL L ++ +A R L LPG +AEL
Sbjct 409 DDLVGTVRALLAPVGLTDEPPAGASARTQWESLLALVGLAEELVAVREGLDLPGFVAELD 468
Query 483 RRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERR 542
RA+A HPP VQGVTLASLHAAKGLEWD VFLVGL DGTLPI HA + + +EEERR
Sbjct 469 ARADAAHPPTVQGVTLASLHAAKGLEWDVVFLVGLVDGTLPIQHAEG---DDDAIEEERR 525
Query 543 LLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGT---SRRNRGA 599
LLYVGITRAR LALSWALSRSPG + R+ SRFL+G+ P D P + R G+
Sbjct 526 LLYVGITRARRVLALSWALSRSPGKGRQRRRSRFLHGLIP----DHHPASRIAESRTGGS 581
Query 600 AARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNT 659
RCR+C + L + A+ +RRC C +DVD ELL +L+SWR STAKEQ VPAYVVFTD T
Sbjct 582 KPRCRVCGSPLLGAEAMKMRRCGDCPSDVDMELLDRLRSWRASTAKEQQVPAYVVFTDAT 641
Query 660 LIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
L AIAE P D AAL+ IPGIGARKL++YGSDVL LV R
Sbjct 642 LAAIAEHRPADVAALVGIPGIGARKLDRYGSDVLALVADR 681
>gi|325675761|ref|ZP_08155445.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
gi|325553732|gb|EGD23410.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
Length=723
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/703 (67%), Positives = 538/703 (77%), Gaps = 24/703 (3%)
Query 11 GLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAG 70
GLD QQ AVLAPRGPVCVLAGAGTGKTRTIT RIA LVA GHV+AGQVLAVTFT RAAG
Sbjct 20 GLDPQQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAGGHVSAGQVLAVTFTARAAG 79
Query 71 EMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVVAR 130
EMR RLR L VQA TFHAAA RQLRYFW +VI DT WQLLD KFA+V +
Sbjct 80 EMRGRLRGLGIGGGGPQ----VQARTFHAAALRQLRYFWPQVIGDTEWQLLDRKFALVGQ 135
Query 131 AASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSEYE 190
AASR L ST+ +RDLA EIEWAK SL+ PE+Y A ARRD P DAA++AAVYS YE
Sbjct 136 AASRVGLSTSTESIRDLASEIEWAKGSLVAPEDYPAVAARARRDIPADAAKVAAVYSGYE 195
Query 191 ALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLSA 250
LKAR LLDFDDLLLHTAAA+E +AVAEEF+DRYRCFVVDEYQDVTPLQQRVL A
Sbjct 196 ELKARNYDGMLLDFDDLLLHTAAALEEHSAVAEEFRDRYRCFVVDEYQDVTPLQQRVLDA 255
Query 251 WLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANR 310
WLGDRDDLTVVGDANQTIYSFTGA+P++LLDFSRRFPDA VVRLERDYRSTP+VVSLANR
Sbjct 256 WLGDRDDLTVVGDANQTIYSFTGATPKYLLDFSRRFPDATVVRLERDYRSTPEVVSLANR 315
Query 311 VIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEVAI 370
VI ARGR+AG++L+L GQR GP P+F E+ DEPAEAA VA I +LI G P+E+A+
Sbjct 316 VIGEARGRIAGTRLQLIGQRPSGPEPTFAEYDDEPAEAAAVARQIKKLIEQGVEPAEIAV 375
Query 371 LYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER-------DTDA 423
LYR+NAQSEV+E+ALT+AGI YQVRGGEGFF RQE++QA+ AL++V+ R DT
Sbjct 376 LYRINAQSEVHEQALTEAGIPYQVRGGEGFFTRQEVRQAINALRQVAGRDDLPEGADTGQ 435
Query 424 ALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRR 483
AL +VRAVL PLGLT P G +ARERW +LTAL L ++ LA P L L GLLAEL
Sbjct 436 ALVTLVRAVLVPLGLTDVEPTGAQARERWGSLTALVSLTEELLAHDPHLTLGGLLAELAA 495
Query 484 RAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHAL--AHGP-NSEPVEEE 540
R+EARHPPVVQGVTLASLHAAKGLEWDAVFLVGL +GTLPI+H L ++ P + + +EEE
Sbjct 496 RSEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLTEGTLPIAHVLGDSNSPGDQDGIEEE 555
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTR-----ADPVPGTSRR 595
RRLLYVG+TR R HLALSWAL+R+ GGR+SR+ SRFL + P A P T +R
Sbjct 556 RRLLYVGVTRPREHLALSWALARNEGGRKSRRRSRFLTNVIPDDSPASRIAKPARSTKQR 615
Query 596 NRGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVF 655
RCR+C L + A L RCE C +++D EL LK WR T++E VPAYVVF
Sbjct 616 -----PRCRVCGKPLLDATAHTLGRCEGCPSNLDMELFEALKDWRRETSREMKVPAYVVF 670
Query 656 TDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
TDNTL AIAE P D+ AL AI GIGA+KLEQ+G+DVL +VRG
Sbjct 671 TDNTLQAIAEQQPQDERALTAISGIGAKKLEQFGADVLAVVRG 713
>gi|312140612|ref|YP_004007948.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi
103S]
gi|311889951|emb|CBH49268.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi
103S]
Length=730
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/703 (67%), Positives = 538/703 (77%), Gaps = 24/703 (3%)
Query 11 GLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAG 70
GLD QQ AVLAPRGPVCVLAGAGTGKTRTIT RIA LVA GHV+AGQVLAVTFT RAAG
Sbjct 27 GLDPQQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVAGGHVSAGQVLAVTFTARAAG 86
Query 71 EMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVVAR 130
EMR RLR L VQA TFHAAA RQLRYFW +VI DT WQLLD KFA+V +
Sbjct 87 EMRGRLRGLGIGGGGPQ----VQARTFHAAALRQLRYFWPQVIGDTEWQLLDRKFALVGQ 142
Query 131 AASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSEYE 190
AASR L ST+ VRDLA EIEWAK SL+ PE+Y A ARRD P DAA++AAVYS YE
Sbjct 143 AASRVGLSTSTESVRDLASEIEWAKGSLVAPEDYPAVAARARRDIPADAAKVAAVYSGYE 202
Query 191 ALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLSA 250
LKAR LLDFDDLLLHTAAA+E +AVAEEF+DRYRCFVVDEYQDVTPLQQRVL A
Sbjct 203 ELKARNYDGMLLDFDDLLLHTAAALEEHSAVAEEFRDRYRCFVVDEYQDVTPLQQRVLDA 262
Query 251 WLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANR 310
WLGDRDDLTVVGDANQTIYSFTGA+P++LLDFSRRFPDA VVRLERDYRSTP+VVSLANR
Sbjct 263 WLGDRDDLTVVGDANQTIYSFTGATPKYLLDFSRRFPDATVVRLERDYRSTPEVVSLANR 322
Query 311 VIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEVAI 370
VI ARGR+AG++L+L GQR GP P+F E+ DEPAEAA VA I +LI G P+E+A+
Sbjct 323 VIGEARGRIAGTRLQLIGQRPSGPEPTFAEYDDEPAEAAAVARQIKKLIEQGVEPAEIAV 382
Query 371 LYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER-------DTDA 423
LYR+NAQSEV+E+ALT+AGI YQVRGGEGFF RQE++QA+ AL++V+ R DT
Sbjct 383 LYRINAQSEVHEQALTEAGIPYQVRGGEGFFTRQEVRQAINALRQVAGRDDLPEGADTGQ 442
Query 424 ALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRR 483
AL +VRAVL PLGLT P G +ARERW +LTAL L ++ LA P L L GLLAEL
Sbjct 443 ALVTLVRAVLVPLGLTDVEPTGAQARERWGSLTALVSLTEELLAHDPHLTLGGLLAELAA 502
Query 484 RAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHAL--AHGP-NSEPVEEE 540
R+EARHPPVVQGVTLASLHAAKGLEWDAVFLVGL +GTLPI+H L ++ P + + +EEE
Sbjct 503 RSEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLTEGTLPIAHVLGDSNSPGDQDGIEEE 562
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTR-----ADPVPGTSRR 595
RRLLYVG+TR R HLALSWAL+R+ GGR+SR+ SRFL + P A P T +R
Sbjct 563 RRLLYVGVTRPREHLALSWALARNEGGRKSRRRSRFLTNVIPDDSPASRIAKPARSTKQR 622
Query 596 NRGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVF 655
RCR+C L + A L RCE C +++D EL LK WR T++E VPAYVVF
Sbjct 623 -----PRCRVCGKPLLDATAHTLGRCEGCPSNLDMELFEALKDWRRETSREMKVPAYVVF 677
Query 656 TDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
TDNTL AIAE P D+ AL AI GIGA+KLEQ+G+DVL +VRG
Sbjct 678 TDNTLQAIAEQQPQDERALTAISGIGAKKLEQFGADVLAVVRG 720
>gi|343927585|ref|ZP_08767053.1| ATP-dependent DNA helicase UvrD2 [Gordonia alkanivorans NBRC
16433]
gi|343762226|dbj|GAA13979.1| ATP-dependent DNA helicase UvrD2 [Gordonia alkanivorans NBRC
16433]
Length=771
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/691 (61%), Positives = 504/691 (73%), Gaps = 10/691 (1%)
Query 9 IAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRA 68
+ GLD +Q AVLAPRGPVCVLAGAGTGKTRTIT RIA LV +G V GQVLAVTFT RA
Sbjct 84 VEGLDPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVDTGQVNPGQVLAVTFTARA 143
Query 69 AGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVV 128
AGEMR+RLR+L G G V A TFHAAA RQLRYFW R D W+LLD+KF ++
Sbjct 144 AGEMRTRLRSLG----VGGATGNVAAQTFHAAAMRQLRYFWPRAFGDARWELLDNKFPLI 199
Query 129 ARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSE 188
+RAA R L +TD +RDL+ EIEWAKA+LI PE YV AV R+ P ++AAVY
Sbjct 200 SRAARRAGLDTATDTLRDLSSEIEWAKATLISPENYVEAVGRLGRESPAPPQKVAAVYGH 259
Query 189 YEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVL 248
YE K DG LLDFDD+L++ + + A+EF+ RYRCFVVDEYQDVTP+QQ +L
Sbjct 260 YEDSKVSPDGDRLLDFDDMLIYMTQILTIEPGAADEFRSRYRCFVVDEYQDVTPVQQGLL 319
Query 249 SAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLA 308
AWLG+RDDLTVVGDANQTIY+FTGASP +LLDFSRRFP+A VVRLERDYRSTP+VV LA
Sbjct 320 DAWLGERDDLTVVGDANQTIYTFTGASPNYLLDFSRRFPEATVVRLERDYRSTPEVVDLA 379
Query 309 NRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEV 368
NRVI AARGR+AG++LRL GQR GP P F E+ DEPA A ++A I LI +G PSE+
Sbjct 380 NRVIGAARGRIAGTRLRLIGQRPSGPQPQFAEYDDEPAAATSIAIEIKHLIKAGVAPSEI 439
Query 369 AILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAALS-- 426
AILYRVNAQSE YE+ALT+AGI YQVRGGE FF R E++QA+ + V+ R+ ++
Sbjct 440 AILYRVNAQSENYEQALTEAGIPYQVRGGEAFFARTEVRQAMRQIATVANREVKPGVTTI 499
Query 427 DVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAE 486
DVVRAVL LGLT + P G +AR RWE+L AL +L ++ +A+ P L LP L AEL R+E
Sbjct 500 DVVRAVLGELGLTEEEPSGAQARARWESLKALVQLTEEMVAENPDLTLPQLSAELTTRSE 559
Query 487 ARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYV 546
ARHPP VQGVTL+SLHAAKGLEWDAVFLVGL DG+LPIS A+ + E VEEERRL YV
Sbjct 560 ARHPPTVQGVTLSSLHAAKGLEWDAVFLVGLTDGSLPISQAIKG--SWEDVEEERRLFYV 617
Query 547 GITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAARCRIC 606
G+TRAR HL LSWAL+R+ GGR +R+ SRFL + P R R CR+C
Sbjct 618 GVTRAREHLHLSWALARNEGGR-ARRRSRFLTDLIPDDSPASKIAKERTPRKGPT-CRVC 675
Query 607 NNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIAEL 666
+ L S A +L RC C +D+DE LL+ LK WR + A+ + VP +VVF+D TL AIAE
Sbjct 676 GSRLMDSTATLLGRCAGCPSDLDENLLVALKEWRRARAQAKKVPPFVVFSDKTLTAIAEQ 735
Query 667 LPTDDAALIAIPGIGARKLEQYGSDVLQLVR 697
PTD AAL++I GIGA+KL++YG D+L LV+
Sbjct 736 RPTDTAALVSISGIGAQKLDEYGEDLLDLVK 766
>gi|54026506|ref|YP_120748.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
gi|54018014|dbj|BAD59384.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
Length=716
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/706 (64%), Positives = 523/706 (75%), Gaps = 23/706 (3%)
Query 9 IAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRA 68
+A LD +Q AV APRGPVCVLAGAGTGKTRTIT+RIA LV +GHV A QVLAVTFT RA
Sbjct 10 LAALDPEQAAAVRAPRGPVCVLAGAGTGKTRTITYRIAHLVEAGHVKADQVLAVTFTARA 69
Query 69 AGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVV 128
AGE+R RLRAL G VQA TFHAAA RQL+YFW +V+ + W+LL++KF VV
Sbjct 70 AGELRGRLRALG----LGGAANQVQARTFHAAALRQLKYFWPQVVGEVPWRLLEAKFPVV 125
Query 129 ARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSE 188
A+AA R L +T+ VRDL EIEWAK+SL+ PE+Y A AA RD P DA +IAAVY+
Sbjct 126 AQAAHRVGLSTATESVRDLLTEIEWAKSSLVAPEDYPAAAAAHHRDIPYDAGRIAAVYTA 185
Query 189 YEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVL 248
YE+LK +G+ L D LLLHTAAA+E+ AVA+EF+ RYR FVVDEYQDVTPLQQRVL
Sbjct 186 YESLKTTPEGLLLDFDD-LLLHTAAALEDFPAVADEFRGRYRSFVVDEYQDVTPLQQRVL 244
Query 249 SAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLA 308
AWLG+RDDLTVVGDANQTIYSFTGA+P +LLDFSRRFPDA VVRLERDYRSTPQVVSLA
Sbjct 245 DAWLGERDDLTVVGDANQTIYSFTGATPSYLLDFSRRFPDATVVRLERDYRSTPQVVSLA 304
Query 309 NRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEV 368
NRVI AARGR+AG++L+L GQR GP P F E+ D PAEAA VAA I RL+A+GTPP+E+
Sbjct 305 NRVIGAARGRIAGTRLQLVGQRPDGPEPEFAEYDDAPAEAAAVAAKIERLVAAGTPPAEI 364
Query 369 AILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD-------T 421
A+LYR+NAQSE YE+AL + GI +QVRGGEGF+ R E++QAL AL++ + RD T
Sbjct 365 AVLYRINAQSEAYEQALAERGIPFQVRGGEGFYQRAEVRQALGALRQAASRDDLPAEART 424
Query 422 DAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAEL 481
AAL +VRA LAP+GLTA P G +ARERW +LTAL L ++ +A AL L GLL EL
Sbjct 425 GAALVRLVRAALAPVGLTATEPAGAQARERWASLTALVTLTEELVAHDAALDLTGLLREL 484
Query 482 RRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPV---E 538
RAEARHPP VQGVTLASLHAAKGLEWDAVFLVGL DGTLPI+H LA + V E
Sbjct 485 AARAEARHPPTVQGVTLASLHAAKGLEWDAVFLVGLTDGTLPIAHVLADDGSVADVAALE 544
Query 539 EERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTR-----ADPVPGTS 593
EERRLLYVG+TRAR +L LSW+LSR+ GGR+SR+ SRFLNG+ P A P S
Sbjct 545 EERRLLYVGVTRAREYLRLSWSLSRTEGGRRSRRRSRFLNGLVPDDSPASRVAAPAMRPS 604
Query 594 RRNRGAAARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYV 653
NR RCR+C L + A ML RC C A+VD +LL L+ WR A E V +V
Sbjct 605 EVNR---PRCRVCAKPLIGTYATMLGRCRRCPAEVDADLLAALREWRAEKAGELGVREFV 661
Query 654 VFTDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
VFTD TL AIAE LP DD AL I GIGA+K+ YG++VL +V R
Sbjct 662 VFTDTTLTAIAEQLPADDRALAGIAGIGAKKIVDYGAEVLAIVASR 707
>gi|300783159|ref|YP_003763450.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
gi|299792673|gb|ADJ43048.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
gi|340524538|gb|AEK39743.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei S699]
Length=694
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/694 (62%), Positives = 508/694 (74%), Gaps = 21/694 (3%)
Query 8 LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67
L+ GLD +QR A APRGPVCVLAGAGTGKTRTITHRIA LV SGHV+AGQVLAVTFT R
Sbjct 13 LLDGLDPEQRAAASAPRGPVCVLAGAGTGKTRTITHRIAHLVRSGHVSAGQVLAVTFTTR 72
Query 68 AAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAV 127
AAGEMR+RLR L GV A QALTFHAAA RQLRYFW RV+ D W LL++K
Sbjct 73 AAGEMRTRLRGL--------GVEAAQALTFHAAARRQLRYFWPRVVGDRPWDLLENKLRY 124
Query 128 VARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYS 187
V +AA+R +L + +RDLA EIEWAKASLI P++Y A A+RD P AAQ+A VY
Sbjct 125 VGQAANRAKLGTEVEILRDLASEIEWAKASLISPDDYPAVTARAQRDIPAPAAQVAEVYR 184
Query 188 EYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRV 247
YE LK + +LDFDDLLLHT A +E AVAEEF++RYRCFVVDEYQDVTPLQQR+
Sbjct 185 TYEELK---NAAQVLDFDDLLLHTTAVLEEHGAVAEEFRERYRCFVVDEYQDVTPLQQRL 241
Query 248 LSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSL 307
L AWLG RDDLTVVGDANQTIYSF GASPR LL+F+RR+PDA VVRLERDYRSTP+VV+L
Sbjct 242 LDAWLGGRDDLTVVGDANQTIYSFGGASPRPLLEFTRRYPDATVVRLERDYRSTPEVVAL 301
Query 308 ANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSE 367
ANRVI AARGR AGS+L+L GQR PGP P F E DE EA VA + L+ G SE
Sbjct 302 ANRVIGAARGRPAGSRLKLIGQRPPGPEPRFAEFDDEAVEAGAVARRVRELLDGGVSASE 361
Query 368 VAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAALSD 427
+AILYRVNAQSE YE AL +AGI Y VRGGE FFNR E++QA+ AL R++ D + L
Sbjct 362 IAILYRVNAQSEAYESALAEAGIPYLVRGGERFFNRTEVRQAMSAL-RMASGDGSSDLVT 420
Query 428 VVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAEA 487
VR+VLA +GLT PP G A+ERW+AL A+ EL ++ + LP AEL +RA A
Sbjct 421 TVRSVLARVGLTESPPAGGAAKERWDALLAIVELAEELASTVADADLPRFCAELDQRAAA 480
Query 488 RHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYVG 547
+HPP V+GVTLASLHAAKGLEWDAVFLVGLA+GT+PI HA G + +EEERRL YVG
Sbjct 481 QHPPTVEGVTLASLHAAKGLEWDAVFLVGLAEGTMPILHA---GDDEAAIEEERRLFYVG 537
Query 548 ITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAA----RC 603
+TRAR HL LSWAL+R+PG R++R+ SRFL G+ P+ P +R + A+ RC
Sbjct 538 VTRAREHLWLSWALARTPGARRNRRRSRFLYGLVPEDH--PAARAARSQQKPASPVKTRC 595
Query 604 RICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAI 663
R+C L + + L RC C + VDE LL +LK+WR A+E VP +VVFTD TL+AI
Sbjct 596 RVCGGPLLETIDIKLGRCGRCPSTVDEGLLERLKTWRGDRARELKVPTFVVFTDATLMAI 655
Query 664 AELLPTDDAALIAIPGIGARKLEQYGSDVLQLVR 697
AE P D+AAL++I GIGA KLE++G+++L +VR
Sbjct 656 AEQRPADEAALVSISGIGATKLERFGAEILGVVR 689
>gi|296140735|ref|YP_003647978.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
gi|296028869|gb|ADG79639.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
Length=697
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/696 (60%), Positives = 506/696 (73%), Gaps = 10/696 (1%)
Query 8 LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67
+I LD +Q+EAVLAPRGPVCVLAGAGTGKTRTITHRIA V++GHVAAGQVLAVTFT R
Sbjct 1 MIEALDPEQQEAVLAPRGPVCVLAGAGTGKTRTITHRIAHQVSTGHVAAGQVLAVTFTSR 60
Query 68 AAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAV 127
AAGEMR+RLR G G VQA+TFHAAA RQLRYFW R + DT W+LLD+KF +
Sbjct 61 AAGEMRARLRG--LGIGGGDGTPGVQAVTFHAAAMRQLRYFWPRAVGDTRWELLDNKFPI 118
Query 128 VARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYS 187
V RAA L TD VRDL EI+WAKASL+ PE Y AV A R P+ +A VY+
Sbjct 119 VGRAARDCELRPETDTVRDLLAEIDWAKASLVTPETYAQAVEQAGRTAPMAPGTVADVYA 178
Query 188 EYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRV 247
YE K DG LLDFDDL+L TAA +E++A VA+EF+DRYR FVVDEYQDVTPLQQ++
Sbjct 179 AYERRKTDQDGNRLLDFDDLILVTAAILEDNAVVADEFRDRYRSFVVDEYQDVTPLQQQL 238
Query 248 LSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSL 307
L+AWLGDRDDLTVVGDANQTIYSFTGA+P +LLDF+RRF DA +VRL+RDYRSTPQVVSL
Sbjct 239 LNAWLGDRDDLTVVGDANQTIYSFTGATPNYLLDFTRRFEDAVIVRLQRDYRSTPQVVSL 298
Query 308 ANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSE 367
AN+VI AA+GRVAG++L L GQR GP P + E DEPAEA VA I L+ASG P SE
Sbjct 299 ANKVIGAAQGRVAGTRLELIGQRPDGPSPIYAEADDEPAEAKLVAKRIRELMASGVPASE 358
Query 368 VAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER---DTDAA 424
+AILYR+NAQS V+E ALT+AGI YQVRGG FF R EI QA+ L + + +
Sbjct 359 IAILYRINAQSAVHEAALTEAGIPYQVRGGSAFFERPEIGQAVRELMSRAGQFGGISGDE 418
Query 425 LSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRR 484
L +V L PLG T +PP G RA ERW+AL AL EL D QRP L L L+ ELR R
Sbjct 419 LMSMVEGALEPLGRTTEPPDGARALERWQALNALVELTADLAKQRPGLTLAELIGELRAR 478
Query 485 AEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLL 544
AEA+HPP ++G+TL+SLHAAKGLEWDAVFLVGL +G++PI+ A+A G + EP+EEERRLL
Sbjct 479 AEAKHPPTMEGMTLSSLHAAKGLEWDAVFLVGLTEGSVPIAQAIAKG-DPEPIEEERRLL 537
Query 545 YVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRAD----PVPGTSRRNRGAA 600
YVG+TRAR HL LSWAL+R+ GGR++RK +RFL+ ++ Q A G S+ R ++
Sbjct 538 YVGVTRAREHLHLSWALARNEGGRKTRKRTRFLDVVSAQADAGRPRVADSGPSKGKRRSS 597
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
CR+C L+T + RC+ C +D+++ L+ LK WR A++Q +P Y +F++ TL
Sbjct 598 DICRVCGGILDTREEKLRSRCDDCPSDLNDALVEALKIWRTGQARDQQIPPYTIFSNATL 657
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLV 696
AIAE P A L+ I GIGA K E+YG +VL LV
Sbjct 658 FAIAEHQPRSRAQLVRINGIGATKAEKYGDEVLALV 693
>gi|333921401|ref|YP_004494982.1| Helicase [Amycolicicoccus subflavus DQS3-9A1]
gi|333483622|gb|AEF42182.1| Helicase [Amycolicicoccus subflavus DQS3-9A1]
Length=696
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/706 (61%), Positives = 502/706 (72%), Gaps = 34/706 (4%)
Query 3 IASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAV 62
I++ L+ GLD +QR AVLAPRGPVCVLAGAGTGKTRT+T RIA LV+SGHVAAGQVLAV
Sbjct 11 ISATDLLDGLDPEQRAAVLAPRGPVCVLAGAGTGKTRTVTRRIAHLVSSGHVAAGQVLAV 70
Query 63 TFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLD 122
TFT RAAGEMR+RLR L A G VQA TFHAAA RQLRYFW RVI DT WQL+D
Sbjct 71 TFTTRAAGEMRTRLRELAATGAADPSCGTVQARTFHAAAMRQLRYFWPRVIGDTSWQLMD 130
Query 123 SKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQI 182
KF V +AA R D VRDL EIEWAK+ LI P++Y AV RD P
Sbjct 131 RKFPAVRQAAQAARASTDPDSVRDLTAEIEWAKSRLIAPDDYAAAVVEEGRDSPAPPEIF 190
Query 183 AAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTP 242
VY YE LK GD +LDFDDLL+ TAAA+E +A VA+EF+DRYR F+VDEYQDVTP
Sbjct 191 TRVYQNYEQLKVSGD-TMMLDFDDLLMFTAAALEENAVVADEFRDRYRSFLVDEYQDVTP 249
Query 243 LQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTP 302
LQQRVL AWLG+RDDLTVVGDANQTIYSFTGA+P +LL+FSRRFP+A VVRL RDYRSTP
Sbjct 250 LQQRVLDAWLGERDDLTVVGDANQTIYSFTGATPAYLLNFSRRFPEATVVRLVRDYRSTP 309
Query 303 QVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASG 362
QVV LAN VI AARGR+AG +L L GQR GP P F + DE EAA +AA I +L G
Sbjct 310 QVVGLANDVIGAARGRIAGMRLELVGQRANGPDPEFTQFDDEATEAAGIAARIKKLQKRG 369
Query 363 TPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD-- 420
P SE+AIL+R+NAQSEVYE+ALT+A I +QVRGGEGFF+R E+KQA+ AL+ +ER
Sbjct 370 VPASEMAILFRINAQSEVYEQALTEAKIPFQVRGGEGFFSRTEVKQAMGALRAAAERTDL 429
Query 421 -TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLA 479
D + +VRAVL P GL P G +ARERWE+L AL L D +A +P L + L++
Sbjct 430 PEDVPMDRLVRAVLVPHGLGDAAPPGQQARERWESLVALERLAADLVAMQPTLTIKELVS 489
Query 480 ELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALA--HGPNSEP- 536
EL+ RA +R PPVV GVTLASLHAAKGLEWDAVFL GL DGTLPISHAL G +E
Sbjct 490 ELQERAASRQPPVVDGVTLASLHAAKGLEWDAVFLAGLTDGTLPISHALGDRDGTGAETA 549
Query 537 VEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRN 596
+EEERRL YVG+TRAR HL L+WAL+R GGR++RKPSRFL A +P S
Sbjct 550 IEEERRLFYVGVTRAREHLTLTWALARGEGGRKTRKPSRFL--------APFLPAGSSAQ 601
Query 597 RGAAA----RCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAY 652
R A+ R + N L+ + EEL +LK+WRL+TA++ +VPA+
Sbjct 602 RAASGSAGKRSKATRNPLDPAG---------------EELFERLKTWRLATARDLDVPAF 646
Query 653 VVFTDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
VVFTD TL AIAE P D AAL+ IPGIGA KLE++G+DVL +V G
Sbjct 647 VVFTDATLTAIAEKQPADGAALVKIPGIGAAKLERFGADVLAVVNG 692
>gi|262203374|ref|YP_003274582.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
gi|262086721|gb|ACY22689.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
Length=717
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/700 (62%), Positives = 519/700 (75%), Gaps = 10/700 (1%)
Query 3 IASDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAV 62
I +DP+I GLD +QR AVLAPRGPVCVLAGAGTGKTRTIT RIA L+ +G V GQVLAV
Sbjct 22 IIADPIIGGLDPEQRAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLIDTGQVNPGQVLAV 81
Query 63 TFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLD 122
TFT RAAGEMR RLR+L G+ +V A TFHAAA RQLRYFW R + W+LLD
Sbjct 82 TFTARAAGEMRGRLRSLGIGGTRGTE--SVAAATFHAAAMRQLRYFWPRAFGNARWELLD 139
Query 123 SKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQI 182
+KF V++R+A R L +TD +RDLA EIEWAKASLI PE YV AV A RD P AA++
Sbjct 140 NKFPVISRSARRAGLDTATDTIRDLASEIEWAKASLIDPEHYVEAVTRADRDTPAPAAKV 199
Query 183 AAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTP 242
AAVYS YE K DG +LDFDDLL++ + D VAEEF+ RYRCFVVDEYQDVTP
Sbjct 200 AAVYSHYEDAKVSADGDRMLDFDDLLIYMTQILVADPGVAEEFRARYRCFVVDEYQDVTP 259
Query 243 LQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTP 302
+QQ +L+AWLGDRDDLTVVGDANQTIY+FTGA+P +LLDF RRFP+A VVRL RDYRSTP
Sbjct 260 VQQGLLNAWLGDRDDLTVVGDANQTIYTFTGATPTYLLDFGRRFPEATVVRLIRDYRSTP 319
Query 303 QVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASG 362
QVV LANRVI AARGR+AG++LRL GQR+PGP P F E+ DEP A V A I++LI +G
Sbjct 320 QVVDLANRVIGAARGRIAGTRLRLVGQRDPGPEPQFAEYDDEPKAATEVTAEISKLIDAG 379
Query 363 TPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERD-- 420
P+E+AILYRVNAQSE YE+ALT+AGI YQVRGGE FF R EI+QA+ L V+ R+
Sbjct 380 VLPAEIAILYRVNAQSETYEQALTEAGIPYQVRGGEAFFTRTEIRQAMRQLTVVAGRELP 439
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
A ++ VVRAVL LGL+ + P G +AR RW++L ALA L DD +A+ AL LP L AE
Sbjct 440 DGADVAAVVRAVLGELGLSQEEPSGAQARSRWQSLNALATLTDDLVAENAALTLPELTAE 499
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
L RA ARHPP VQGVTL+SLHAAKGLEWDAVFLVGL DG+LPI+ A+ + E VEEE
Sbjct 500 LSARAAARHPPTVQGVTLSSLHAAKGLEWDAVFLVGLIDGSLPINQAIKA--SWEEVEEE 557
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAP-QTRADPVPGTSRRNRGA 599
RRL YVG+TRAR HL +SW L+R+ GGR +R+ SRFL + P + A V + RG
Sbjct 558 RRLFYVGVTRAREHLHISWPLARNEGGR-ARRRSRFLTDLVPDDSPASRVAPERKPRRGP 616
Query 600 AARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNT 659
CR+C + L S A +L RC C +D+DEELL+ LK WR A+ + VPA+VVF+D T
Sbjct 617 V--CRVCGSRLMDSTATLLGRCADCPSDLDEELLIALKDWRRERAQAKQVPAFVVFSDKT 674
Query 660 LIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRGR 699
L AIAE PTD+AAL++I GIGA KL +YG D++ L++ R
Sbjct 675 LTAIAEQRPTDNAALVSISGIGASKLVEYGDDIIGLIKNR 714
>gi|259506511|ref|ZP_05749413.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
gi|259165931|gb|EEW50485.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
Length=677
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (59%), Positives = 502/690 (73%), Gaps = 22/690 (3%)
Query 12 LDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAGE 71
LD+ QR A APRGPVC+LAGAGTGKTRTIT+RIA L+ G V+ +VLAVTFT RAAGE
Sbjct 7 LDEDQRIAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTSRAAGE 66
Query 72 MRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVVARA 131
MR RL + G+G VQA TFHAAA +QL YFW +V D W+LLD+KF +V RA
Sbjct 67 MRHRLSLM--------GIGGVQARTFHAAARKQLMYFWPQVAGDLRWKLLDNKFPLVGRA 118
Query 132 ASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSEYEA 191
RL +ST+ VRD+ GEIEWAKASLI PE+Y + R PP+ A ++A VY+ YE
Sbjct 119 VRGARLESSTEKVRDILGEIEWAKASLIAPEQYPEKLGT--RTPPVPAEKVADVYARYEQ 176
Query 192 LKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLSAW 251
+K G+G+ L DDLLLHTA A+EN AVAEEF+++YR FVVDEYQDVTPLQQRVL AW
Sbjct 177 MKTTGEGLLLDF-DDLLLHTAGALENSPAVAEEFREQYRSFVVDEYQDVTPLQQRVLEAW 235
Query 252 LGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANRV 311
LG+RDDLTVVGDANQTIYSFTGA+P +LL+FSR + +A VV+L+RDYRSTPQV LAN V
Sbjct 236 LGERDDLTVVGDANQTIYSFTGATPHYLLNFSRTYENATVVKLQRDYRSTPQVTDLANTV 295
Query 312 IAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEVAIL 371
IA ARGRVAG++L L G R PGP P F + DEP EA VA I L+ G SE+A+L
Sbjct 296 IAQARGRVAGTRLELQGMRAPGPEPEFTSYDDEPTEAREVAGKILTLLDQGVAASEIAVL 355
Query 372 YRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAA-LSDVVR 430
YR+NAQS V+E+AL+ AGI YQVRGGEGFF R EI+QAL L R ++RD D L +VR
Sbjct 356 YRINAQSAVFEQALSDAGIVYQVRGGEGFFTRAEIRQALSQLVRAAQRDVDETDLVRLVR 415
Query 431 AVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAEARHP 490
L PLGL+ Q P G + RERW++L AL +LV++ + P L GLL +L R EA+HP
Sbjct 416 RTLVPLGLSTQEPEGAQERERWQSLNALVDLVEELVTATPDLDFQGLLRKLHERQEAKHP 475
Query 491 PVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYVGITR 550
P V+GVTLASLHAAKGLEWDAVFLVGL D TLPISHA+ G E +EEERRL YVG+TR
Sbjct 476 PTVEGVTLASLHAAKGLEWDAVFLVGLVDSTLPISHAIKAG--DEAIEEERRLFYVGVTR 533
Query 551 ARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVP--GTSRRNRGAAARCRICNN 608
AR HL SWALSR GGR++RK +RFL+GI DP P GT R NR CR+C N
Sbjct 534 AREHLFCSWALSRQEGGRKTRKRTRFLDGIV----IDPAPESGTPRGNR--PRNCRVCGN 587
Query 609 ELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIAELLP 668
L+T A ++ RC C DE + +L++WR +TA+++NVPAY+VF++ TL+A+AEL+P
Sbjct 588 PLDTPAERVVGRCNACPPQADEGVFERLRTWRNTTAQKENVPAYIVFSNATLMAVAELMP 647
Query 669 TDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
T D L+ +PGIG K E+YG ++L+++RG
Sbjct 648 TSDNELLNVPGIGPMKAEKYGDEILEILRG 677
>gi|25027350|ref|NP_737404.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
YS-314]
gi|23492631|dbj|BAC17604.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
YS-314]
Length=694
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/690 (59%), Positives = 502/690 (73%), Gaps = 22/690 (3%)
Query 12 LDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAGE 71
LD+ QR A APRGPVC+LAGAGTGKTRTIT+RIA L+ G V+ +VLAVTFT RAAGE
Sbjct 24 LDEDQRIAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTSRAAGE 83
Query 72 MRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVVARA 131
MR RL + G+G VQA TFHAAA +QL YFW +V D W+LLD+KF +V RA
Sbjct 84 MRHRLSLM--------GIGGVQARTFHAAARKQLMYFWPQVAGDLRWKLLDNKFPLVGRA 135
Query 132 ASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSEYEA 191
RL +ST+ VRD+ GEIEWAKASLI PE+Y + R PP+ A ++A VY+ YE
Sbjct 136 VRGARLESSTEKVRDILGEIEWAKASLIAPEQYPEKLGT--RTPPVPAEKVADVYARYEQ 193
Query 192 LKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLSAW 251
+K G+G+ L DDLLLHTA A+EN AVAEEF+++YR FVVDEYQDVTPLQQRVL AW
Sbjct 194 MKTTGEGLLLDF-DDLLLHTAGALENSPAVAEEFREQYRSFVVDEYQDVTPLQQRVLEAW 252
Query 252 LGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANRV 311
LG+RDDLTVVGDANQTIYSFTGA+P +LL+FSR + +A VV+L+RDYRSTPQV LAN V
Sbjct 253 LGERDDLTVVGDANQTIYSFTGATPHYLLNFSRTYENATVVKLQRDYRSTPQVTDLANTV 312
Query 312 IAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEVAIL 371
IA ARGRVAG++L L G R PGP P F + DEP EA VA I L+ G SE+A+L
Sbjct 313 IAQARGRVAGTRLELQGMRAPGPEPEFTSYDDEPTEAREVAGKILTLLDQGVAASEIAVL 372
Query 372 YRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAA-LSDVVR 430
YR+NAQS V+E+AL+ AGI YQVRGGEGFF R EI+QAL L R ++RD D L +VR
Sbjct 373 YRINAQSAVFEQALSDAGIVYQVRGGEGFFTRAEIRQALSQLVRAAQRDVDETDLVRLVR 432
Query 431 AVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAEARHP 490
L PLGL+ Q P G + RERW++L AL +LV++ + P L GLL +L R EA+HP
Sbjct 433 RTLVPLGLSTQEPEGAQERERWQSLNALVDLVEELVTATPDLDFQGLLRKLHERQEAKHP 492
Query 491 PVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYVGITR 550
P V+GVTLASLHAAKGLEWDAVFLVGL D TLPISHA+ G E +EEERRL YVG+TR
Sbjct 493 PTVEGVTLASLHAAKGLEWDAVFLVGLVDSTLPISHAIKAG--DEAIEEERRLFYVGVTR 550
Query 551 ARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVP--GTSRRNRGAAARCRICNN 608
AR HL SWALSR GGR++RK +RFL+GI DP P GT R NR CR+C N
Sbjct 551 AREHLFCSWALSRQEGGRKTRKRTRFLDGIV----IDPAPESGTPRGNR--PRNCRVCGN 604
Query 609 ELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIAELLP 668
L+T A ++ RC C DE + +L++WR +TA+++NVPAY+VF++ TL+A+AEL+P
Sbjct 605 PLDTPAERVVGRCNACPPQADEGVFERLRTWRNTTAQKENVPAYIVFSNATLMAVAELMP 664
Query 669 TDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
T D L+ +PGIG K E+YG ++L+++RG
Sbjct 665 TSDNELLNVPGIGPMKAEKYGDEILEILRG 694
>gi|302524541|ref|ZP_07276883.1| DNA helicase II [Streptomyces sp. AA4]
gi|302433436|gb|EFL05252.1| DNA helicase II [Streptomyces sp. AA4]
Length=699
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/710 (61%), Positives = 517/710 (73%), Gaps = 29/710 (4%)
Query 1 MSIASDP--------LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASG 52
M+IAS P L+ GLD +QR A APRGPVCVLAGAGTGKTRTITHRIA LV SG
Sbjct 1 MAIASSPQSRQSRASLLDGLDPEQRAAAAAPRGPVCVLAGAGTGKTRTITHRIAHLVRSG 60
Query 53 HVAAGQVLAVTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRV 112
HVAAGQVLAVTFT RAAGEMR+RLR L GV A QALTFHAAA RQLRYFW RV
Sbjct 61 HVAAGQVLAVTFTTRAAGEMRTRLRGL--------GVDAAQALTFHAAARRQLRYFWPRV 112
Query 113 IADTGWQLLDSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAAR 172
+ D W L+D+KF +VA+AA R RL T+ +RDLA EIEW+KASL+ P++Y + A +
Sbjct 113 VGDRPWDLIDNKFRLVAQAAQRVRLSTETEVLRDLASEIEWSKASLVSPDDYPSVAARMQ 172
Query 173 RDPPLDAAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCF 232
RD P AQ+A VY YE LK +LDFDDLLL T A +E AVA EF+DRYRCF
Sbjct 173 RDTPAPVAQVAEVYRWYEELKTNAQ---VLDFDDLLLQTTAVLEKHDAVAAEFRDRYRCF 229
Query 233 VVDEYQDVTPLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVV 292
VVDEYQDVTPLQQR+L AWLG RDDLTVVGDANQTIYSF GASP+ LL+F+RRFP+A VV
Sbjct 230 VVDEYQDVTPLQQRLLDAWLGGRDDLTVVGDANQTIYSFGGASPKSLLEFTRRFPEATVV 289
Query 293 RLERDYRSTPQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVA 352
RLERDYRSTPQVV+LANRVI AARGR AGS+L+L GQR GP P F E+ DE AEA+ VA
Sbjct 290 RLERDYRSTPQVVALANRVIGAARGRPAGSRLKLIGQRPDGPEPRFAEYEDEAAEASAVA 349
Query 353 ASIARLIASGTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLA 412
+ L+ + P SE+A+L+RVNAQSE YE+ALT+AGI Y VRGGE FF R E++QA+ A
Sbjct 350 RRVRELLDADVPASEIAVLFRVNAQSEAYEQALTEAGIPYLVRGGERFFQRTEVRQAMAA 409
Query 413 LQRVSERDTDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPAL 472
L+ S T L VR+VLA +GLT QPP G A+ERW+AL AL EL ++ A
Sbjct 410 LRTASMEPTSLELVTAVRSVLARVGLTEQPPSGGAAKERWDALLALVELAEELAATVEDA 469
Query 473 QLPGLLAELRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGP 532
LP +AEL +RA A+HPP V+GVTLASLHAAKGLEWDAVFLVGL++GT+PI HA
Sbjct 470 DLPRFVAELEQRAAAQHPPTVEGVTLASLHAAKGLEWDAVFLVGLSEGTMPILHA---DG 526
Query 533 NSEPVEEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGT 592
+ +EEERRL YVG+TRAR HL+LSW+LSR PG ++R+ SRFL G+ P+ P
Sbjct 527 DDAAIEEERRLFYVGVTRAREHLSLSWSLSRGPGRGRNRRRSRFLYGLIPEDH--PAARV 584
Query 593 SRRNRGA-----AARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQ 647
+R + A ARCR+C L + V L RC C + VDEELL +LK+WR ++E
Sbjct 585 ARSQQTAKPGSKVARCRLCGGPLVQTMEVKLGRCGKCPSTVDEELLEKLKTWRGERSREL 644
Query 648 NVPAYVVFTDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVR 697
VPA+VVFTD TL+AIAE PTDD AL++I GIGA KLE++G++VL +VR
Sbjct 645 KVPAFVVFTDATLMAIAEQRPTDDGALVSISGIGATKLERFGAEVLDVVR 694
>gi|300779588|ref|ZP_07089444.1| excision endonuclease subunit UvrD [Corynebacterium genitalium
ATCC 33030]
gi|300533698|gb|EFK54757.1| excision endonuclease subunit UvrD [Corynebacterium genitalium
ATCC 33030]
Length=685
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/687 (59%), Positives = 482/687 (71%), Gaps = 18/687 (2%)
Query 12 LDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAGE 71
LD Q A APRGPVC+LAGAGTGKTRTIT+RIA L+ G VA +VLAVTFT RAAGE
Sbjct 11 LDPDQLVAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVAPQRVLAVTFTSRAAGE 70
Query 72 MRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVVARA 131
MR RLR + G+G VQA TFHAAA RQLRYFW +V D W L+D+KF +V RA
Sbjct 71 MRDRLRDM--------GIGGVQARTFHAAALRQLRYFWPQVAGDMPWHLIDNKFPLVGRA 122
Query 132 ASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSEYEA 191
A L + D VRDL EIEWAKASL+ PE Y +A +RR+PP DA ++AAVY YE
Sbjct 123 ARSVGLESHKDMVRDLLSEIEWAKASLVTPESYAETIANSRREPPTDAEKVAAVYKRYEQ 182
Query 192 LKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLSAW 251
K DG+ L DFDDLLLH A A+EN AVAEEF+ +Y+ FVVDEYQDVTPLQQRVL W
Sbjct 183 SKTSPDGMAL-DFDDLLLHVAGALENAPAVAEEFRTQYQTFVVDEYQDVTPLQQRVLEGW 241
Query 252 LGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANRV 311
LG RDDLTVVGDANQTIYSFTGASP +LL+FSR + A VV+L+RDYRSTP+V LAN V
Sbjct 242 LGQRDDLTVVGDANQTIYSFTGASPDYLLNFSRTYGHATVVKLQRDYRSTPEVTDLANTV 301
Query 312 IAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEVAIL 371
I+ A GR AG++L L G R PGP P+F ++DEP EA VAA I LI G PP E+AIL
Sbjct 302 ISKATGRAAGTRLELQGMRAPGPEPTFASYADEPTEAREVAAQIRTLIDGGVPPREIAIL 361
Query 372 YRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDT--DAALSDVV 429
YR+NAQS V+E+ L+ AGI YQVRGGEGFFNR EI++A+ L + + R+ D ++ V
Sbjct 362 YRLNAQSAVFEQTLSDAGIVYQVRGGEGFFNRPEIREAIGVLVQATRRNDLPDDPVT-VA 420
Query 430 RAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAEARH 489
R APLGL+A P G + RERW+ L AL EL+ D + A LPG+L LR+RAE++
Sbjct 421 RTAFAPLGLSATEPEGAQQRERWQTLNALVELIADIVNTGEADSLPGVLQSLRQRAESKQ 480
Query 490 PPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYVGIT 549
PP V GVTLASLHAAKGLEWDAVFLVGL + TLPISHA+ G E +EEERRL YVGIT
Sbjct 481 PPAVDGVTLASLHAAKGLEWDAVFLVGLVEKTLPISHAIKAG--DEQIEEERRLFYVGIT 538
Query 550 RARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAARCRICNNE 609
RAR HL LSW+ +R GGR+SR SRFL+GIAPQ + P +R + RCR+C N
Sbjct 539 RAREHLHLSWSFARQEGGRKSRDRSRFLDGIAPQLDVETTPDRLKRPK----RCRVCGNP 594
Query 610 LNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIAELLPT 669
+ T A L R E C +E LK WRL TA+E+ P Y+VFTD TL+++ E +P
Sbjct 595 ITTPAEKTLGRHEECEPTYNEAAFTALKQWRLDTAREKQHPPYMVFTDATLLSVVEAMPA 654
Query 670 DDAALIAIPGIGARKLEQYGSDVLQLV 696
A L+ I GIG KLEQYG DVL ++
Sbjct 655 SLAELLDISGIGPSKLEQYGEDVLAVL 681
>gi|134097688|ref|YP_001103349.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL
2338]
gi|291006353|ref|ZP_06564326.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL
2338]
gi|133910311|emb|CAM00424.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL
2338]
Length=693
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/703 (60%), Positives = 499/703 (71%), Gaps = 23/703 (3%)
Query 3 IASDP-LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLA 61
+A P L+ GLD +QREAV+APRGPVCVLAGAGTGKTRTITHRIA LV G VA QVLA
Sbjct 1 MAEQPRLLEGLDPEQREAVVAPRGPVCVLAGAGTGKTRTITHRIAYLVQRGLVAPQQVLA 60
Query 62 VTFTQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLL 121
VTFT RAAGEMR+RLRAL G VQA TFHAAA+RQLRYFW RV W L
Sbjct 61 VTFTARAAGEMRTRLRAL--------GAAGVQAQTFHAAAFRQLRYFWPRVHDSQVWPLT 112
Query 122 DSKFAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQ 181
D+KF +V +AA R L + VRDLAGEIEW+KA L+GPE+Y A AAA RD P Q
Sbjct 113 DNKFRLVMQAAGRVGLPTEKESVRDLAGEIEWSKACLVGPEQYPAAAAAAGRDAPAPPEQ 172
Query 182 IAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVT 241
++ V++ YE LK +G +LDFDDLLLHTAA +E +AEEF+DRYR FVVDEYQDV
Sbjct 173 VSQVFAGYEKLK---NGAQVLDFDDLLLHTAAILEEHPEIAEEFRDRYRSFVVDEYQDVN 229
Query 242 PLQQRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRST 301
PLQQRVL AWLG RDDLTVVGDANQTIYSF GA+P++L+ F RRFP+A VVRLERDYRST
Sbjct 230 PLQQRVLDAWLGKRDDLTVVGDANQTIYSFAGAAPKWLVGFPRRFPEATVVRLERDYRST 289
Query 302 PQVVSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIAS 361
PQVV+LAN+VI AAR R +G++LRL GQR GP P+F E DEPAEA +A IA+L
Sbjct 290 PQVVALANQVIDAARERPSGTRLRLVGQRPDGPRPNFAEFDDEPAEAHAIAHKIAKLAKQ 349
Query 362 GTPPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER-D 420
G SE+AIL+RVNAQSEVYE+AL A I YQVRGGE FF R E++QA++ L+ + R +
Sbjct 350 GVALSEMAILFRVNAQSEVYEKALADAEIPYQVRGGERFFARTEVRQAMVTLRAAASRYE 409
Query 421 TDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
L VR VL +GLT +PP G ARERWE+L AL EL ++ A P L +AE
Sbjct 410 QSGDLPADVREVLTEVGLTDEPPGGGAARERWESLIALVELAEELAATVPEADLARYVAE 469
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
L RAE++HPP V+GVTLASLHAAKGLEWDAVFL GL +GTLPI HA +EEE
Sbjct 470 LDVRAESQHPPTVEGVTLASLHAAKGLEWDAVFLAGLVEGTLPIQHA----DTPAAIEEE 525
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRLLYVG+TRAR HL LSWALSR+ GGR+ R+ SRF+ + P +P + A
Sbjct 526 RRLLYVGVTRAREHLQLSWALSRAEGGRRYRRRSRFVYNLVPDDHPAALPAKVKERETVA 585
Query 601 A------RCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVV 654
A RCR+CN L + + L RC C +DVDE LL QLK+WR A++ VP+YVV
Sbjct 586 APSKAKPRCRVCNTTLVNTMDIKLARCSDCPSDVDEGLLEQLKAWRSERARQLKVPSYVV 645
Query 655 FTDNTLIAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVR 697
FTD TL AIAE P+D+A L+ I GIGA KL ++G DVL LV+
Sbjct 646 FTDATLTAIAEQRPSDEAELVGISGIGASKLRKFGPDVLALVQ 688
>gi|19552005|ref|NP_600007.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
gi|62389668|ref|YP_225070.1| DNA helicase RECQ [Corynebacterium glutamicum ATCC 13032]
gi|21323545|dbj|BAB98172.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|41325003|emb|CAF19484.1| PUTATIVE DNA HELICASE RECQ [Corynebacterium glutamicum ATCC 13032]
Length=678
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/688 (59%), Positives = 495/688 (72%), Gaps = 22/688 (3%)
Query 12 LDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAGE 71
LD+ QR A APRGPVC+LAGAGTGKTRTIT+RIA L+ G V+ +VLAVTFT RAAGE
Sbjct 7 LDEDQRIAASAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTSRAAGE 66
Query 72 MRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVVARA 131
MR RL + G+G VQA TFHAAA +QL YFW +V + W+LLD+KF +V RA
Sbjct 67 MRHRLNLM--------GIGGVQARTFHAAARKQLLYFWPQVAGNLPWRLLDNKFQLVGRA 118
Query 132 ASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSEYEA 191
RL + T+ VRD+ GEIEWAKASLI PE+Y + R PP A +IA VY YE
Sbjct 119 VRGARLESQTEKVRDILGEIEWAKASLITPEQYPDRLGT--RTPPAPAEKIAEVYQRYEN 176
Query 192 LKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLSAW 251
+KA +G+ L DDLLLHTA A+EN AVAEEF+ +YR FVVDEYQDVTPLQQRVL AW
Sbjct 177 MKATPEGMLLDF-DDLLLHTAGALENSPAVAEEFRQQYRSFVVDEYQDVTPLQQRVLDAW 235
Query 252 LGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANRV 311
LGDRDDLTVVGDANQTIYSFTGA+P FLL+FSR++P+A VV+L+RDYRSTPQV +LAN V
Sbjct 236 LGDRDDLTVVGDANQTIYSFTGATPEFLLNFSRKYPEATVVKLQRDYRSTPQVTALANTV 295
Query 312 IAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEVAIL 371
I ARGRVAG++L L G R GP P F DEP EA VA I L+ +G SE+A+L
Sbjct 296 IGQARGRVAGTRLELQGMRIAGPEPEFSAFDDEPTEAREVAGRILTLLKNGVQASEIAVL 355
Query 372 YRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAALSDVVRA 431
YR+NAQS V+E+AL AGI YQVRGGEGFF R EI+QAL L R S+RD D SD+VR
Sbjct 356 YRINAQSAVFEQALADAGIVYQVRGGEGFFTRPEIRQALSQLIRTSQRDVDE--SDLVRL 413
Query 432 ---VLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAEAR 488
L PLGL+++ P G + RERW++L AL +LV D + P L L GLL +LR R EA+
Sbjct 414 TQRTLVPLGLSSEEPSGAQERERWQSLNALVDLVKDLVKATPDLDLTGLLLKLRERQEAK 473
Query 489 HPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYVGI 548
HPP V+GVTLASLHAAKGLEWDAVFLVGL D TLPISHA+ G E +EEERRL YVG+
Sbjct 474 HPPTVEGVTLASLHAAKGLEWDAVFLVGLVDSTLPISHAIKSG--DEAIEEERRLFYVGV 531
Query 549 TRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAARCRICNN 608
TRAR HL SWAL+R GGR+SRK SRFL+GI + ++ GT R NR CR+C +
Sbjct 532 TRAREHLHCSWALARQEGGRKSRKRSRFLDGIVVEMASE--SGTPRSNR--PKNCRVCGS 587
Query 609 ELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIAELLP 668
L++ A + RC +C DE + QL++WR TAK +N AY+VF++ TL+AIAE+ P
Sbjct 588 VLSSPAEKAVGRCASCPIQADERVFEQLRTWRNDTAKRENKAAYMVFSNATLMAIAEMNP 647
Query 669 TDDAALIAIPGIGARKLEQYGSDVLQLV 696
T++ L+++PG+G K+E YG DVL ++
Sbjct 648 TNENELLSVPGVGPMKIENYGDDVLAIL 675
>gi|227502915|ref|ZP_03932964.1| helicase [Corynebacterium accolens ATCC 49725]
gi|227076337|gb|EEI14300.1| helicase [Corynebacterium accolens ATCC 49725]
Length=684
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/697 (56%), Positives = 490/697 (71%), Gaps = 22/697 (3%)
Query 5 SDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTF 64
+ P ++ LD+ QR A APRGPVC+LAGAGTGKTRTIT+RIA++V G V +VLAVTF
Sbjct 2 NKPDLSLLDEDQRRAATAPRGPVCILAGAGTGKTRTITYRIANMVDQGFVNPQRVLAVTF 61
Query 65 TQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSK 124
T RAAGEMR RLR + GV VQA TFHAAA RQL+YFW +V D W LLD+K
Sbjct 62 TARAAGEMRDRLRMM--------GVAGVQAQTFHAAARRQLKYFWPQVAGDLPWTLLDNK 113
Query 125 FAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAA 184
F +VARA L S D +RD+ EIEWAK++L+ E+Y + +A R P DAA++A
Sbjct 114 FPLVARAVRSVGLDNSKDMIRDVLAEIEWAKSALVSAEDYESVIAETDRTAPADAAKVAE 173
Query 185 VYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQ 244
+ YE KA D + LDFDDLL+H A AIEN A+AE F+++YR FVVDEYQDVTPLQ
Sbjct 174 AFRRYEKAKATPD-MMHLDFDDLLMHIAGAIENVPAIAETFREQYRTFVVDEYQDVTPLQ 232
Query 245 QRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQV 304
QRVL+AWLGDRDDLTVVGDANQTIYSF GASP +LL+FSR +PD +V+L+RDYRSTPQV
Sbjct 233 QRVLNAWLGDRDDLTVVGDANQTIYSFNGASPEYLLNFSRSYPDGTIVKLQRDYRSTPQV 292
Query 305 VSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTP 364
LANRVI A GR AG++L L G REPGP P+F + E EA VA + L+ G P
Sbjct 293 TDLANRVIGKATGRAAGTRLELQGMREPGPEPTFKAYESEENEAQEVAGQVLTLLNQGVP 352
Query 365 PSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAA 424
SE+AILYR+NAQSE +E+AL AG+ YQVRGGEGFF R EI +A+ L + RD
Sbjct 353 ASEIAILYRINAQSEQFEQALADAGVVYQVRGGEGFFRRPEILEAIRVLIAATRRDD--- 409
Query 425 LSD----VVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
L + + RA LGL+A P G +ARERW++L AL L++ + P + L G+L E
Sbjct 410 LPEDPVAIARAAFVELGLSATEPQGAQARERWQSLNALVGLIEKIVESTPGIDLNGVLGE 469
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LRRR+ + P ++GVTLA++HAAKGLEWDAVFLVGL++ +PI+HA+ G +E +EEE
Sbjct 470 LRRRSTDKQAPAMEGVTLATVHAAKGLEWDAVFLVGLSEKLMPINHAIKAG--NEQIEEE 527
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRL YVGITRAR HLALSWAL+++ G R SR+ +RFL+GIAP + G SRR +
Sbjct 528 RRLFYVGITRAREHLALSWALAKTAGSRASRERTRFLDGIAPGVESAAGSGRSRRPK--- 584
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
RCR+C+ L T A ++ R E C + D+E+ L+SWR A+E+ VPAYV+FTD TL
Sbjct 585 -RCRVCSGVLETPAEKVIGRHEDCEGNGDDEVFSALRSWRAQVAREEKVPAYVIFTDATL 643
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVR 697
AI+E LP D+A L++I GIG KLE+YG +L+++R
Sbjct 644 QAISEELPADEAELLSISGIGPNKLERYGEQILEVIR 680
>gi|306835518|ref|ZP_07468532.1| excision endonuclease subunit UvrD [Corynebacterium accolens
ATCC 49726]
gi|304568575|gb|EFM44126.1| excision endonuclease subunit UvrD [Corynebacterium accolens
ATCC 49726]
Length=684
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/697 (56%), Positives = 490/697 (71%), Gaps = 22/697 (3%)
Query 5 SDPLIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTF 64
+ P ++ LD+ QR A APRGPVC+LAGAGTGKTRTIT+RIA++V G V +VLAVTF
Sbjct 2 NKPDLSLLDEDQRRAATAPRGPVCILAGAGTGKTRTITYRIANMVDQGFVNPQRVLAVTF 61
Query 65 TQRAAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSK 124
T RAAGEMR RLR + GV VQA TFHAAA RQL+YFW +V D W LLD+K
Sbjct 62 TARAAGEMRDRLRMM--------GVAGVQAQTFHAAARRQLKYFWPQVAGDLPWTLLDNK 113
Query 125 FAVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAA 184
F +VARA L S D +RD+ EIEWAK++L+ E+Y + +A R P DAA++A
Sbjct 114 FPLVARAVRSVGLDNSKDMIRDVLAEIEWAKSALVSAEDYESVIAETDRTAPADAAKVAE 173
Query 185 VYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQ 244
+ YE KA D + LDFDDLL+H A AIEN A+AE F+++YR FVVDEYQDVTPLQ
Sbjct 174 AFRRYEKAKATPD-MMHLDFDDLLMHIAGAIENVPAIAETFREQYRTFVVDEYQDVTPLQ 232
Query 245 QRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQV 304
QRVL+AWLGDRDDLTVVGDANQTIYSF GASP +LL+FSR +PD +V+L+RDYRSTPQV
Sbjct 233 QRVLNAWLGDRDDLTVVGDANQTIYSFNGASPEYLLNFSRSYPDGTIVKLQRDYRSTPQV 292
Query 305 VSLANRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTP 364
LANRVI A GR AG++L L G REPGP P+F + E EA VA + L+ G P
Sbjct 293 TDLANRVIGKATGRAAGTRLELQGMREPGPEPTFKAYESEENEAQEVAGQVLTLLNQGVP 352
Query 365 PSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAA 424
SE+AILYR+NAQSE +E+AL AG+ YQVRGGEGFF R EI +A+ L + RD
Sbjct 353 ASEIAILYRINAQSEQFEQALADAGVVYQVRGGEGFFRRPEILEAIRVLIAATRRDD--- 409
Query 425 LSD----VVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAE 480
L + + RA LGL+A P G +ARERW++L AL L++ + P + L G+L E
Sbjct 410 LPEDPVAIARAAFVELGLSATEPQGAQARERWQSLNALVGLIEKIVESTPGIDLNGVLGE 469
Query 481 LRRRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEE 540
LRRR+ + P ++GVTLA++HAAKGLEWDAVFLVGL++ +PI+HA+ G +E +EEE
Sbjct 470 LRRRSTDKQAPAMEGVTLATVHAAKGLEWDAVFLVGLSEKLMPINHAIKAG--NEQIEEE 527
Query 541 RRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAA 600
RRL YVGITRAR HLALSWAL+++ G R SR+ +RFL+GIAP + G SRR +
Sbjct 528 RRLFYVGITRAREHLALSWALAKTAGSRASRERTRFLDGIAPGVESAAGSGRSRRPK--- 584
Query 601 ARCRICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTL 660
RCR+C+ L T A ++ R E C + D+E+ L+SWR A+E+ VPAYV+FTD TL
Sbjct 585 -RCRVCSGVLETPAEKVIGRHEDCEGNGDDEVFSALRSWRAQVAREEKVPAYVIFTDATL 643
Query 661 IAIAELLPTDDAALIAIPGIGARKLEQYGSDVLQLVR 697
AI+E LP D+A L++I GIG KLE+YG +L+++R
Sbjct 644 QAISEELPVDEAELLSISGIGPNKLERYGEQILEVIR 680
>gi|296118831|ref|ZP_06837407.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM
20306]
gi|295968320|gb|EFG81569.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM
20306]
Length=692
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/694 (56%), Positives = 489/694 (71%), Gaps = 16/694 (2%)
Query 9 IAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRA 68
+ LDD QR A APRGPVC+LAGAGTGKTRTIT+RIA +V G V+ +VLAVTFT +A
Sbjct 8 LEALDDDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHMVDQGFVSPQRVLAVTFTSKA 67
Query 69 AGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVV 128
AGEMR RL ++ GV VQA TFHAAA RQLRYFW +V D W+L+D+KF +V
Sbjct 68 AGEMRDRLLSM--------GVTGVQARTFHAAALRQLRYFWPQVAGDLPWRLVDNKFPIV 119
Query 129 ARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSE 188
+RA + S + VRD+ EIEWAKASLI + YV A+ A R P D ++A VY
Sbjct 120 SRAVRNVGMDPSKETVRDILSEIEWAKASLISADGYVEALKAHDRIAPKDPLKVAKVYQR 179
Query 189 YEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVL 248
YE K++ DG+ LLDFDDLL+H A A+EN AVAEEF+ +YR FVVDEYQDVTPLQQRVL
Sbjct 180 YEEFKSQPDGM-LLDFDDLLIHVAGALENAPAVAEEFRQQYRTFVVDEYQDVTPLQQRVL 238
Query 249 SAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLA 308
+AWLG+RDDLTVVGDANQTIYSFTGASP FLLDFS+ + +A VV+L+RDYRSTPQV LA
Sbjct 239 NAWLGERDDLTVVGDANQTIYSFTGASPDFLLDFSKTYDNATVVKLQRDYRSTPQVTDLA 298
Query 309 NRVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEV 368
N VI A GR AG++L L G REPGPVP FH + E EA VA I L+ G SE+
Sbjct 299 NTVIDKAVGRAAGTRLSLEGMREPGPVPKFHAYESEEIEAKEVAGEILTLLNQGVAASEI 358
Query 369 AILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSER-DTDAALSD 427
AILYR N QS V+EEAL AGI YQVRGG+GFF+RQEI +A +L R + R D
Sbjct 359 AILYRTNFQSAVFEEALADAGIVYQVRGGDGFFHRQEILEATRSLHRAARRTDLPNDPVA 418
Query 428 VVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAEA 487
+ +A +GL+A P G +ARERW++L+AL +L+ + P + LPG++ +L+RRA
Sbjct 419 IAKAAFVDIGLSATEPEGAQARERWQSLSALVDLISTIVRDHPGIDLPGVIVDLQRRASN 478
Query 488 RHPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGP---NSEPVEEERRLL 544
+ P ++GVTL++LHAAKGLEWDAVFLVGL + LPI+ A+ + E +EEERRL
Sbjct 479 KQTPTMEGVTLSTLHAAKGLEWDAVFLVGLTEKLLPINQAIKAQDDRGDDEAIEEERRLF 538
Query 545 YVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAARCR 604
YVGITRAR+HL SWAL+++ G R SR+ +RFL+G+ P+ D +SR +R RCR
Sbjct 539 YVGITRARIHLLCSWALAKTTGSRASRQRTRFLDGVVPEL-GDSSAHSSRVSR--PKRCR 595
Query 605 ICNNELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIA 664
+CN LN A +L R ETC + DEE+ L+ WR +K+ PAYVVFTD TL++I+
Sbjct 596 VCNGYLNAPADKVLGRHETCESLADEEVFTALRQWRARVSKDIGKPAYVVFTDATLLSIS 655
Query 665 ELLPTDDAALIAIPGIGARKLEQYGSDVLQLVRG 698
E LPTD +L++I G+G RK+EQYG +VL+++RG
Sbjct 656 EALPTDKNSLLSISGVGPRKIEQYGDEVLEVIRG 689
>gi|145294942|ref|YP_001137763.1| hypothetical protein cgR_0888 [Corynebacterium glutamicum R]
gi|140844862|dbj|BAF53861.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043720|gb|EGV39408.1| hypothetical protein CgS9114_13116 [Corynebacterium glutamicum
S9114]
Length=678
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/688 (59%), Positives = 495/688 (72%), Gaps = 22/688 (3%)
Query 12 LDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAGE 71
LD+ QR A APRGPVC+LAGAGTGKTRTIT+RIA L+ G V+ +VLAVTFT RAAGE
Sbjct 7 LDEDQRIAASAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTSRAAGE 66
Query 72 MRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAVVARA 131
MR RL + G+G VQA TFHAAA +QL YFW +V + W+LLD+KF +V RA
Sbjct 67 MRHRLNLM--------GIGGVQARTFHAAARKQLLYFWPQVAGNLPWRLLDNKFQLVGRA 118
Query 132 ASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSEYEA 191
RL + T+ VRD+ GEIEWAKASLI PE+Y + R PP A +IA VY YE
Sbjct 119 VRGARLESQTEKVRDILGEIEWAKASLITPEQYPDRLGT--RTPPAPAEKIAEVYQRYEN 176
Query 192 LKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLSAW 251
+KA +G+ L DDLLLHTA A+EN AVAEEF+ +YR FVVDEYQDVTPLQQRVL AW
Sbjct 177 MKATPEGMLLDF-DDLLLHTAGALENSPAVAEEFRQQYRSFVVDEYQDVTPLQQRVLDAW 235
Query 252 LGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANRV 311
LGDRDDLTVVGDANQTIYSFTGA+P +LL+FSR++P+A VV+L+RDYRSTPQV +LAN V
Sbjct 236 LGDRDDLTVVGDANQTIYSFTGATPEYLLNFSRKYPEATVVKLQRDYRSTPQVTALANTV 295
Query 312 IAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEVAIL 371
I ARGRVAG++L L G R GP P F DEP EA VA I L+ +G SE+A+L
Sbjct 296 IGQARGRVAGTRLELQGMRIAGPEPEFSAFDDEPTEAREVAGRILTLLKNGVQASEIAVL 355
Query 372 YRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAALSDVVRA 431
YR+NAQS V+E+AL AGI YQVRGGEGFF R EI+QAL L R S+RD D SD+VR
Sbjct 356 YRINAQSAVFEQALADAGIVYQVRGGEGFFTRPEIRQALSQLIRTSQRDVDE--SDLVRL 413
Query 432 ---VLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQLPGLLAELRRRAEAR 488
L PLGL+++ P G + RERW++L AL +LV D + P L L GLL +LR R EA+
Sbjct 414 TQRTLVPLGLSSEEPSGAQERERWQSLNALVDLVKDLVKATPDLDLTGLLLKLRERQEAK 473
Query 489 HPPVVQGVTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYVGI 548
HPP V+GVTLASLHAAKGLEWDAVFLVGL D TLPISHA+ G E +EEERRL YVG+
Sbjct 474 HPPTVEGVTLASLHAAKGLEWDAVFLVGLVDSTLPISHAIKSG--DEAIEEERRLFYVGV 531
Query 549 TRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVPGTSRRNRGAAARCRICNN 608
TRAR HL SWAL+R GGR+SRK SRFL+GI + ++ GT R NR CR+C +
Sbjct 532 TRAREHLHCSWALARQEGGRKSRKRSRFLDGIVVEMASE--SGTPRSNR--PKNCRVCGS 587
Query 609 ELNTSAAVMLRRCETCAADVDEELLLQLKSWRLSTAKEQNVPAYVVFTDNTLIAIAELLP 668
L++ A + RC +C DE + QL++WR TAK +N AY+VF++ TL+AIAE+ P
Sbjct 588 VLSSPAEKAVGRCASCPIQADERVFEQLRTWRNDTAKRENKAAYMVFSNATLMAIAEMNP 647
Query 669 TDDAALIAIPGIGARKLEQYGSDVLQLV 696
T++ L+++PG+G K+E YG DVL ++
Sbjct 648 TNENELLSVPGVGPMKIENYGDDVLAIL 675
Lambda K H
0.319 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1648559162026
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40