BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3202c Length=1055 Score E Sequences producing significant alignments: (Bits) Value gi|294993861|ref|ZP_06799552.1| ATP-dependent DNA helicase [Myco... 2052 0.0 gi|15610338|ref|NP_217718.1| ATP-dependent DNA helicase [Mycobac... 2052 0.0 gi|31794379|ref|NP_856872.1| ATP-dependent DNA helicase [Mycobac... 2050 0.0 gi|289575917|ref|ZP_06456144.1| ATP-dependent DNA helicase [Myco... 2049 0.0 gi|289448885|ref|ZP_06438629.1| ATP-dependent DNA helicase [Myco... 2049 0.0 gi|336459531|gb|EGO38468.1| DNA/RNA helicase, superfamily I [Myc... 1456 0.0 gi|41409399|ref|NP_962235.1| hypothetical protein MAP3301c [Myco... 1449 0.0 gi|118466579|ref|YP_883296.1| helicase, UvrD/Rep family protein ... 1446 0.0 gi|240172136|ref|ZP_04750795.1| ATP-dependent DNA helicase [Myco... 1429 0.0 gi|342861157|ref|ZP_08717806.1| helicase, UvrD/Rep family protei... 1428 0.0 gi|289759337|ref|ZP_06518715.1| ATP-dependent DNA helicase [Myco... 1425 0.0 gi|183981381|ref|YP_001849672.1| ATP-dependent DNA helicase [Myc... 1422 0.0 gi|118618003|ref|YP_906335.1| ATP-dependent DNA helicase [Mycoba... 1420 0.0 gi|108798374|ref|YP_638571.1| UvrD/REP helicase [Mycobacterium s... 1212 0.0 gi|126434058|ref|YP_001069749.1| UvrD/REP helicase [Mycobacteriu... 1204 0.0 gi|289555475|ref|ZP_06444685.1| ATP-dependent DNA helicase [Myco... 1197 0.0 gi|333991557|ref|YP_004524171.1| ATP-dependent DNA helicase [Myc... 1196 0.0 gi|120402800|ref|YP_952629.1| UvrD/REP helicase [Mycobacterium v... 1195 0.0 gi|145225244|ref|YP_001135922.1| UvrD/REP helicase [Mycobacteriu... 1160 0.0 gi|315445541|ref|YP_004078420.1| DNA/RNA helicase, superfamily I... 1150 0.0 gi|118470846|ref|YP_886307.1| helicase, UvrD/Rep family protein ... 1124 0.0 gi|289747015|ref|ZP_06506393.1| UvrD/Rep family helicase [Mycoba... 975 0.0 gi|289763385|ref|ZP_06522763.1| hypothetical ATP-dependent DNA h... 974 0.0 gi|296169028|ref|ZP_06850690.1| UvrD/Rep family helicase [Mycoba... 963 0.0 gi|289747016|ref|ZP_06506394.1| UvrD/Rep family helicase [Mycoba... 957 0.0 gi|254776586|ref|ZP_05218102.1| helicase, UvrD/Rep family protei... 912 0.0 gi|169630597|ref|YP_001704246.1| ATP-dependent DNA helicase [Myc... 845 0.0 gi|226365846|ref|YP_002783629.1| ATP-dependent DNA helicase [Rho... 837 0.0 gi|111023338|ref|YP_706310.1| ATP-dependent DNA helicase [Rhodoc... 835 0.0 gi|226305705|ref|YP_002765665.1| ATP-dependent DNA helicase [Rho... 787 0.0 gi|229490969|ref|ZP_04384802.1| UvrD/REP helicase domain protein... 781 0.0 gi|312140618|ref|YP_004007954.1| uvrd/rep family ATP-dependent D... 778 0.0 gi|325675755|ref|ZP_08155439.1| UvrD/Rep family helicase [Rhodoc... 776 0.0 gi|333921407|ref|YP_004494988.1| putative ATP-dependent DNA heli... 763 0.0 gi|262203379|ref|YP_003274587.1| UvrD/REP helicase [Gordonia bro... 739 0.0 gi|343927590|ref|ZP_08767058.1| putative ATP-dependent DNA helic... 728 0.0 gi|257054746|ref|YP_003132578.1| DNA/RNA helicase, superfamily I... 724 0.0 gi|300783059|ref|YP_003763350.1| ATP-dependent DNA helicase [Amy... 714 0.0 gi|256374999|ref|YP_003098659.1| UvrD/REP helicase [Actinosynnem... 707 0.0 gi|326383309|ref|ZP_08204997.1| UvrD/REP helicase [Gordonia neof... 701 0.0 gi|291006368|ref|ZP_06564341.1| ATP-dependent DNA helicase [Sacc... 694 0.0 gi|134097673|ref|YP_001103334.1| ATP-dependent DNA helicase [Sac... 694 0.0 gi|302524414|ref|ZP_07276756.1| ATP-dependent DNA helicase [Stre... 685 0.0 gi|289751890|ref|ZP_06511268.1| UvrD/Rep family helicase [Mycoba... 642 0.0 gi|296138859|ref|YP_003646102.1| UvrD/REP helicase [Tsukamurella... 642 0.0 gi|331694961|ref|YP_004331200.1| UvrD/REP helicase [Pseudonocard... 627 3e-177 gi|289751891|ref|ZP_06511269.1| UvrD/Rep family helicase [Mycoba... 623 6e-176 gi|296169026|ref|ZP_06850689.1| UvrD/Rep family helicase [Mycoba... 568 2e-159 gi|297562751|ref|YP_003681725.1| UvrD/REP helicase [Nocardiopsis... 561 3e-157 gi|330469985|ref|YP_004407728.1| UvrD/REP helicase [Verrucosispo... 557 5e-156 >gi|294993861|ref|ZP_06799552.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210] gi|298526679|ref|ZP_07014088.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] gi|298496473|gb|EFI31767.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] gi|326902571|gb|EGE49504.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148] gi|339296033|gb|AEJ48144.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CCDC5079] gi|339299643|gb|AEJ51753.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CCDC5180] Length=1055 Score = 2052 bits (5317), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1054/1055 (99%), Positives = 1055/1055 (100%), Gaps = 0/1055 (0%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR Sbjct 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA Sbjct 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ Sbjct 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE Sbjct 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL Sbjct 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR Sbjct 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG Sbjct 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 Query 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS Sbjct 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 Query 481 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS Sbjct 481 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 Query 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV Sbjct 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 Query 601 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 660 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV Sbjct 601 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 660 Query 661 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD Sbjct 661 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720 Query 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA Sbjct 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780 Query 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS Sbjct 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840 Query 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL Sbjct 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 Query 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 T+VGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH Sbjct 901 TKVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 Query 961 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL 1020 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL Sbjct 961 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL 1020 Query 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP Sbjct 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 >gi|15610338|ref|NP_217718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv] gi|15842788|ref|NP_337825.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551] gi|148663061|ref|YP_001284584.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra] 35 more sequence titles Length=1055 Score = 2052 bits (5317), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1055/1055 (100%), Positives = 1055/1055 (100%), Gaps = 0/1055 (0%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR Sbjct 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA Sbjct 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ Sbjct 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE Sbjct 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL Sbjct 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR Sbjct 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG Sbjct 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 Query 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS Sbjct 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 Query 481 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS Sbjct 481 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 Query 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV Sbjct 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 Query 601 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 660 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV Sbjct 601 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 660 Query 661 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD Sbjct 661 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720 Query 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA Sbjct 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780 Query 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS Sbjct 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840 Query 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL Sbjct 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 Query 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH Sbjct 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 Query 961 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL 1020 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL Sbjct 961 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL 1020 Query 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP Sbjct 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 >gi|31794379|ref|NP_856872.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97] gi|121639087|ref|YP_979311.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991579|ref|YP_002646268.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] 14 more sequence titles Length=1055 Score = 2050 bits (5312), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1054/1055 (99%), Positives = 1054/1055 (99%), Gaps = 0/1055 (0%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR Sbjct 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA Sbjct 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ Sbjct 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE Sbjct 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL Sbjct 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR Sbjct 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG Sbjct 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 Query 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS Sbjct 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 Query 481 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS Sbjct 481 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 Query 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV Sbjct 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 Query 601 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 660 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV Sbjct 601 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 660 Query 661 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD Sbjct 661 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720 Query 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780 GDGEPVAMQPVSAPRVLSAAAVVGRLR VVCAPACAVDDADRDCAATQLARLAKAGVPGA Sbjct 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780 Query 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS Sbjct 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840 Query 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL Sbjct 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 Query 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH Sbjct 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 Query 961 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL 1020 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL Sbjct 961 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL 1020 Query 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP Sbjct 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 >gi|289575917|ref|ZP_06456144.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289540348|gb|EFD44926.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] Length=1055 Score = 2049 bits (5309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1053/1055 (99%), Positives = 1053/1055 (99%), Gaps = 0/1055 (0%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MSHIWGVEAGAAL PGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR Sbjct 1 MSHIWGVEAGAALVPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA Sbjct 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ Sbjct 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE Sbjct 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL Sbjct 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR Sbjct 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG Sbjct 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 Query 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS Sbjct 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 Query 481 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS Sbjct 481 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 Query 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV Sbjct 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 Query 601 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 660 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV Sbjct 601 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 660 Query 661 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD Sbjct 661 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720 Query 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780 GDGEPVAMQPVSAPRVLSAAAVVGRLR VVCAPACAVDDADRDCAATQLARLAKAGVPGA Sbjct 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780 Query 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS Sbjct 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840 Query 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL Sbjct 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 Query 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH Sbjct 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 Query 961 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL 1020 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL Sbjct 961 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL 1020 Query 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP Sbjct 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 >gi|289448885|ref|ZP_06438629.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|289421843|gb|EFD19044.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] Length=1055 Score = 2049 bits (5308), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1053/1055 (99%), Positives = 1053/1055 (99%), Gaps = 0/1055 (0%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR Sbjct 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA Sbjct 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ Sbjct 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRR GRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE Sbjct 181 LGRRPGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL Sbjct 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR Sbjct 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG Sbjct 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 Query 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS Sbjct 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 Query 481 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS Sbjct 481 RKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 Query 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV Sbjct 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 Query 601 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 660 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV Sbjct 601 VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 660 Query 661 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD Sbjct 661 TKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720 Query 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780 GDGEPVAMQPVSAPRVLSAAAVVGRLR VVCAPACAVDDADRDCAATQLARLAKAGVPGA Sbjct 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780 Query 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS Sbjct 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840 Query 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL Sbjct 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 Query 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH Sbjct 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 Query 961 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL 1020 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL Sbjct 961 AQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQL 1020 Query 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP Sbjct 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 >gi|336459531|gb|EGO38468.1| DNA/RNA helicase, superfamily I [Mycobacterium avium subsp. paratuberculosis S397] Length=1042 Score = 1456 bits (3768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 805/1057 (77%), Positives = 878/1057 (84%), Gaps = 21/1057 (1%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MS W +AGA LAPG+RG V VLGGPGTGKS+LLV+AAVA I AG +PESVLLLTGSGR Sbjct 1 MSFTWDAQAGAVLAPGVRGTVRVLGGPGTGKSSLLVDAAVAQIEAGVNPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 + M RSALTTALLRS GP A+REP+VRTVH YAYAVLR+AA+RAG+A PRL+TSA Sbjct 61 LPMAERSALTTALLRSAGAGP---AVREPLVRTVHGYAYAVLRRAAERAGEAPPRLVTSA 117 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGD DGP A T WPA LRPAL+TAGFATELRNLLARCAERG+DP L++ Sbjct 118 EQDAIIRELLAGDLADGPRAATAWPAALRPALSTAGFATELRNLLARCAERGVDPQALER 177 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRR RPEW+AAGQFA++YEQVMLLR AVG AAP+AT PAL AAELVGAALEAFAVD E Sbjct 178 LGRRCRRPEWVAAGQFARQYEQVMLLRAAVGTAAPEATTPALGAAELVGAALEAFAVDAE 237 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAER R+R LLVDDAQQLDPQAARLVR+LAAG +LALIAGDPNQAVFGFRGG+P LL Sbjct 238 LLAAERGRIRVLLVDDAQQLDPQAARLVRVLAAGADLALIAGDPNQAVFGFRGGDPGSLL 297 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 P+VTLT SHRCAPAVARAV+G+A RLPG S GRRIEG G GSV VR Sbjct 298 --------DGAAPAVTLTRSHRCAPAVARAVSGVAGRLPGSSAGRRIEGAGPGEGSVAVR 349 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPAV 419 LA SAHAEAA IADALRRAHL+DGVPWSQMAVIVRSVPRA RLPRALAAAGVPV PA Sbjct 350 LAASAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRAGARLPRALAAAGVPVTAPAA 409 Query 420 GGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQT 479 GPL+ +PAVRALLTVL ATADGLDG +AL LLTGPIG VDPVSLRQLRR LQRA G+ Sbjct 410 SGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLRRNLQRANAGRP 469 Query 480 SRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQR 539 F +LLVE L G APP G RALRRVRAVL AA RCHR G QDPR+ LWAAW R Sbjct 470 PGDFAELLVEALTGTAPPPGAQFRALRRVRAVLDAAGRCHRDG----QDPRYILWAAWHR 525 Query 540 SGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLP 599 SGLQRRWL+ SE GG AA QA RDL++VTALFDITD YVSRTSGASLRGLVEHV ALQLP Sbjct 526 SGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYVSRTSGASLRGLVEHVAALQLP 585 Query 600 VVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDG 659 PEP A EQV VLSAHAALG EWD VVIAGLQDGLWPNTVPRGGVLGTQRLLD LDG Sbjct 586 GAGPEPVATAEQVSVLSAHAALGREWDFVVIAGLQDGLWPNTVPRGGVLGTQRLLDVLDG 645 Query 660 VTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWA 719 V+ DAS+RAPLLAEERRLLV AMGRAR+RLLVTAVDSD G EA LPS F +EIAQWA Sbjct 646 VSADASVRAPLLAEERRLLVAAMGRARQRLLVTAVDSDTDGSDREAALPSPFCYEIAQWA 705 Query 720 DGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPG 779 D EP A+QPVSAPRVLSAAA+VGRLR VVCAP AVD+ DR CAATQLARLAKAGVPG Sbjct 706 GEDAEPAALQPVSAPRVLSAAALVGRLRGVVCAPDGAVDELDRRCAATQLARLAKAGVPG 765 Query 780 ADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVG 839 ADP+ WHGL PVST++PL D+VTLTPST+Q L DCPLRWLAERHGGT+ R+L SA+G Sbjct 766 ADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQTLTDCPLRWLAERHGGTDPRDLRSAIG 825 Query 840 SVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSE 899 SV+HAL A+P RS ++L+AELDRVW HLPF AQW+S NELARHRAM++AF QWRA +R Sbjct 826 SVVHALIAQPHRSPAELVAELDRVWRHLPFAAQWHSDNELARHRAMLEAFAQWRANTRGA 885 Query 900 LTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQ 959 LTEVGVEV+IDG L G G R++RLRGR DRLERD AGRLVIVD+KTGKTPVSKDDAQQ Sbjct 886 LTEVGVEVEIDGTLSTGDG--REVRLRGRVDRLERDAAGRLVIVDVKTGKTPVSKDDAQQ 943 Query 960 HAQLAMYQLAVAEGLVRA--GD-EPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNL 1016 HAQLA+YQLAVA GL+ A GD EPGGARLVYVGK+ A+GV ER+QDPLT AA D+WR Sbjct 944 HAQLALYQLAVAHGLLGAAGGDAEPGGARLVYVGKAAASGVVEREQDPLTAAAADQWREA 1003 Query 1017 VRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGS 1053 +R+ A ATAGPQFIARRNDGCTHCPLRP CPAH GS Sbjct 1004 LRRAADATAGPQFIARRNDGCTHCPLRPCCPAHADGS 1040 >gi|41409399|ref|NP_962235.1| hypothetical protein MAP3301c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398230|gb|AAS05851.1| hypothetical protein MAP_3301c [Mycobacterium avium subsp. paratuberculosis K-10] Length=1044 Score = 1449 bits (3750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 804/1057 (77%), Positives = 877/1057 (83%), Gaps = 23/1057 (2%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MS W +AGA LAPG+RG V VLGGPGTGKS+LLV+AAVA I AG +PESVLLLTGSGR Sbjct 5 MSFTWDAQAGAVLAPGVRGTVRVLGGPGTGKSSLLVDAAVAQIEAGVNPESVLLLTGSGR 64 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 + M RSALTTALLRS GP A+REP+VRTVH YAYAVLR+AA+RAG+A PRL+TSA Sbjct 65 LPMAERSALTTALLRSAGAGP---AVREPLVRTVHGYAYAVLRRAAERAGEAPPRLVTSA 121 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGD DGP A T WPA LRPAL+TAGFATELRNLLARCAERG+DP L++ Sbjct 122 EQDAIIRELLAGDLADGPRAATAWPAALRPALSTAGFATELRNLLARCAERGVDPQALER 181 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRR RPEW+AAGQFA++YEQVMLLR AVG AAP+AT PAL AAELVGAALEAFAVD E Sbjct 182 LGRRCRRPEWVAAGQFARQYEQVMLLRAAVGTAAPEATTPALGAAELVGAALEAFAVDAE 241 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAER R+R LLVDDAQQLDPQAARLVR+LAAG +LALIAGDPNQAVFGFRGG+P LL Sbjct 242 LLAAERGRIRVLLVDDAQQLDPQAARLVRVLAAGADLALIAGDPNQAVFGFRGGDPGSLL 301 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 P+VTLT SHRCAPAVARAV+G+A RLPG S GRRIEG G GSV VR Sbjct 302 --------DGAAPAVTLTRSHRCAPAVARAVSGVAGRLPGSSAGRRIEGAGPGEGSVAVR 353 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPAV 419 LA SAHAEAA IADALRRAHL+DGVPWSQMAVIVRSVPRA RLPRALAAAGVPV PA Sbjct 354 LAASAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRAGARLPRALAAAGVPVTAPAA 413 Query 420 GGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQT 479 GPL+ +PAVRALLTVL ATADGLDG +AL LLTGPIG VDPVSLRQLRR LQRA G+ Sbjct 414 SGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLRRNLQRANAGRP 473 Query 480 SRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQR 539 F +LLVE L G APP G RALRRVRAVL AA RCHR G QDPR+ LWAAW R Sbjct 474 PGDFAELLVEALTGTAPPPGAPFRALRRVRAVLDAAGRCHRDG----QDPRYILWAAWHR 529 Query 540 SGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLP 599 SGLQRRWL+ SE GG AA QA RDL++VTALFDITD YVSRTSGASLRGLVEHV ALQLP Sbjct 530 SGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYVSRTSGASLRGLVEHVAALQLP 589 Query 600 VVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDG 659 EP A EQV VLSAHAALG EWD VVIAGLQDGLWPNTVPRGGVLGTQRLLD LDG Sbjct 590 GA--EPVATAEQVSVLSAHAALGREWDFVVIAGLQDGLWPNTVPRGGVLGTQRLLDVLDG 647 Query 660 VTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWA 719 V+ DAS+RAPLLAEERRLLV AMGRAR+RLLVTAVDSD G EA LPS F +EIAQWA Sbjct 648 VSADASVRAPLLAEERRLLVAAMGRARQRLLVTAVDSDTDGSDREAALPSPFCYEIAQWA 707 Query 720 DGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPG 779 D EP A+QPVSAPRVLSAAA+VGRLR VVCAP AVD+ DR CAATQLARLAKAGVPG Sbjct 708 GEDAEPAALQPVSAPRVLSAAALVGRLRGVVCAPDGAVDELDRRCAATQLARLAKAGVPG 767 Query 780 ADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVG 839 ADP+ WHGL PVST++PL D+VTLTPST+Q L DCPLRWLAERHGGT+ R+L SA+G Sbjct 768 ADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQTLTDCPLRWLAERHGGTDPRDLRSAIG 827 Query 840 SVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSE 899 SV+HAL A+P RS ++L+AELDRVW HLPF AQW+S NELARHRAM++AF QWRA +R Sbjct 828 SVVHALIAQPHRSPAELVAELDRVWRHLPFAAQWHSDNELARHRAMLEAFAQWRANTRGA 887 Query 900 LTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQ 959 LTEVGVEV+IDG L G G R++RLRGR DRLERD AGRLVIVD+KTGKTPVSKDDAQQ Sbjct 888 LTEVGVEVEIDGTLSTGDG--REVRLRGRVDRLERDAAGRLVIVDVKTGKTPVSKDDAQQ 945 Query 960 HAQLAMYQLAVAEGLVRA--GD-EPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNL 1016 HAQLA+YQLAVA GL+ A GD EPGGARLVYVGK+ A+GV ER+QDPLT AA D+WR Sbjct 946 HAQLALYQLAVAHGLLGAAGGDAEPGGARLVYVGKAAASGVVEREQDPLTAAAADQWREA 1005 Query 1017 VRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGS 1053 +R+ A ATAGPQFIARRNDGCTHCPLRP CPAH GS Sbjct 1006 LRRAADATAGPQFIARRNDGCTHCPLRPCCPAHADGS 1042 >gi|118466579|ref|YP_883296.1| helicase, UvrD/Rep family protein [Mycobacterium avium 104] gi|118167866|gb|ABK68763.1| helicase, UvrD/Rep family protein [Mycobacterium avium 104] Length=1042 Score = 1446 bits (3743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 801/1057 (76%), Positives = 874/1057 (83%), Gaps = 21/1057 (1%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MS W +AGA LAPG G V VLGGPGTGKS+LLV+AAVA I AG +PESVLLLTGSGR Sbjct 1 MSFTWDAQAGAVLAPGAHGTVRVLGGPGTGKSSLLVDAAVAQIEAGVNPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 + M RSALTTALLRS GP A+REP+VRTVH YAYAVLR+AA+RAG+A PRL+TSA Sbjct 61 LPMAERSALTTALLRSAGAGP---AVREPLVRTVHGYAYAVLRRAAERAGEAPPRLVTSA 117 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGD DGP A T WPA LRPAL+TAGFATELRNLLARCAERG+DP L++ Sbjct 118 EQDAIIRELLAGDLADGPRAATAWPAALRPALSTAGFATELRNLLARCAERGVDPQALER 177 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRR RPEW+AAGQFA++YEQVMLLR AVG AAP+AT PAL AAELVGAALEAFAVD E Sbjct 178 LGRRCRRPEWVAAGQFARQYEQVMLLRAAVGTAAPEATTPALGAAELVGAALEAFAVDAE 237 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAER R+R LLVDDAQQLDPQAARLVR+LAAG +LALIAGDPNQAVFGFRGG+P LL Sbjct 238 LLAAERGRIRVLLVDDAQQLDPQAARLVRVLAAGADLALIAGDPNQAVFGFRGGDPGSLL 297 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 P+VTLT SHRCAPAVARAV+G+A RLPG S GRRIEG G GSV VR Sbjct 298 --------DGAAPAVTLTTSHRCAPAVARAVSGVAGRLPGSSAGRRIEGAGPGEGSVAVR 349 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPAV 419 LA SAHAEAA IADALRRAHL+DGVPWSQMAVIVRSVPRA RLPRALAAAGVPV PA Sbjct 350 LAASAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRAGARLPRALAAAGVPVTAPAA 409 Query 420 GGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQT 479 GPL+ +PAVRALLTVL ATADGLDG +AL LLTGPIG VDPVSLRQLRR LQRA G+ Sbjct 410 SGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLRRNLQRANAGRP 469 Query 480 SRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQR 539 F +LLVE L G APP G RALRRVRAVL AA RCHR G QDPR+ LWAAW R Sbjct 470 PGDFAELLVEALTGTAPPPGALFRALRRVRAVLDAAGRCHRDG----QDPRYILWAAWHR 525 Query 540 SGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLP 599 SGLQRRWL+ SE GG AA QA RDL++VTALFDITD YVSRTSGASLRGLVEHV ALQLP Sbjct 526 SGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYVSRTSGASLRGLVEHVAALQLP 585 Query 600 VVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDG 659 P P A EQV VLSAHAALG EWD VVIAGLQDGLWPNTVPRGGVLGTQRLLD LDG Sbjct 586 GAGPVPVATAEQVSVLSAHAALGREWDFVVIAGLQDGLWPNTVPRGGVLGTQRLLDVLDG 645 Query 660 VTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWA 719 V+ DAS+RAPLLAEERRLLV AMGRAR+RLLVTAVDSD G HEA LPS F +EIAQWA Sbjct 646 VSADASVRAPLLAEERRLLVAAMGRARQRLLVTAVDSDTDGSDHEAALPSPFCYEIAQWA 705 Query 720 DGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPG 779 D E A+QPVSAPRVLSAAA+VGRLR VVCAP AVD+ DR CAATQLARLA+AGVPG Sbjct 706 GEDVETAALQPVSAPRVLSAAALVGRLRGVVCAPDGAVDELDRRCAATQLARLAQAGVPG 765 Query 780 ADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVG 839 ADP+ WHGL PVST++PL D+VTLTPST+Q L DCPLRWLAERHGGT+ R+L SA+G Sbjct 766 ADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQTLTDCPLRWLAERHGGTDPRDLRSAIG 825 Query 840 SVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSE 899 SV+HAL A+P RS ++L+AELDR W HLPF AQW+S NELARHRAM++AF QWRA +R Sbjct 826 SVVHALIAQPHRSPAELVAELDRAWRHLPFAAQWHSDNELARHRAMLEAFAQWRANTRGA 885 Query 900 LTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQ 959 LTEVGVEV+IDG L G G R++RLRGR DRLERD AGRLVIVD+KTGKTPVSKDDAQQ Sbjct 886 LTEVGVEVEIDGTLSTGDG--REVRLRGRVDRLERDAAGRLVIVDVKTGKTPVSKDDAQQ 943 Query 960 HAQLAMYQLAVAEGLVRA--GD-EPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNL 1016 HAQLA+YQLAVA GL+ A GD EPGGARLVYVGK+ A+GV ER+QDPLT AA D+WR Sbjct 944 HAQLALYQLAVAHGLLGAAGGDAEPGGARLVYVGKAAASGVVEREQDPLTAAAADQWREA 1003 Query 1017 VRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGS 1053 +R+ A ATAGPQFIARRNDGCTHCPLRP CPAH GS Sbjct 1004 LRRAADATAGPQFIARRNDGCTHCPLRPCCPAHADGS 1040 >gi|240172136|ref|ZP_04750795.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478] Length=1051 Score = 1429 bits (3700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 792/1057 (75%), Positives = 864/1057 (82%), Gaps = 18/1057 (1%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MS W EA L PG+RG V VLGGPGTGKS+LL EAAVAHI AG DPESVLLLTGSGR Sbjct 1 MSLSWDAEARELLVPGMRGLVRVLGGPGTGKSSLLAEAAVAHIAAGADPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 +G+RARSALT+ALLRS G R+A+REP+VRTVH YAYA+LR+ A+R G+ PRLLTSA Sbjct 61 LGIRARSALTSALLRSSRIGSGRSAVREPLVRTVHGYAYALLRRNAERTGEGPPRLLTSA 120 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGD ED A+ + WP HL PAL+TAGFA ELRNLLARC ERG+DP +L++ Sbjct 121 EQDAIIRELLAGDLEDAAASQSAWPQHLWPALSTAGFANELRNLLARCFERGVDPWDLER 180 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRR G PEWIAAG+FA++YEQVMLLR A G+AAPQATA AL AAELVGAAL+AFAVDP Sbjct 181 LGRRCGHPEWIAAGRFARQYEQVMLLRSAAGMAAPQATARALGAAELVGAALDAFAVDPG 240 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAERARVR LLVDDAQQLDPQAARLVR L AGTE A++AGDPNQAVFGFRGGEP GLL Sbjct 241 LLAAERARVRLLLVDDAQQLDPQAARLVRALVAGTERAVVAGDPNQAVFGFRGGEPAGLL 300 Query 301 ADDPPPAGGAPIPS--VTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVT 358 GGA VTLTVSHRCAPAVARAV+GI RRLPG S G++IEGTG + GSV Sbjct 301 -------GGAVDGGRLVTLTVSHRCAPAVARAVSGITRRLPGGSAGKQIEGTGEQDGSVA 353 Query 359 VRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAA-GVPVAPP 417 VRLA SAHAEAAMIAD LRRAH+IDGVPWSQMAVIVRSVPRA AA GVPVA P Sbjct 354 VRLATSAHAEAAMIADTLRRAHVIDGVPWSQMAVIVRSVPRAAARLPRALAAAGVPVAMP 413 Query 418 AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPG 477 +GG LS EPA ALLTVL ATADGL G++AL LLTGPIG VDPV+LRQLRRTLQR R G Sbjct 414 TMGGSLSQEPAPAALLTVLAATADGLTGERALALLTGPIGRVDPVTLRQLRRTLQRGRSG 473 Query 478 QTSRKFGDLLVEVLGGDAPP----SGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTL 533 + FGD+L + L +A SGP + LRRVRAVL AAARCHR G QDPR+TL Sbjct 474 DSPGDFGDVLAQTLSPEAESHPQFSGPQAGPLRRVRAVLAAAARCHRQG----QDPRYTL 529 Query 534 WAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHV 593 WAAW RSGLQ RWL ASE GG A VQA RDLE VT LFDITD YVSRTSGASLRGL+E+V Sbjct 530 WAAWHRSGLQSRWLTASERGGPAGVQAARDLELVTTLFDITDQYVSRTSGASLRGLIEYV 589 Query 594 TALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRL 653 TALQLP V EP + T+QV VLSAHAALGHEWDLVVIAGLQ+GLWPNT+PRGGVL TQRL Sbjct 590 TALQLPPVSAEPVSQTQQVTVLSAHAALGHEWDLVVIAGLQEGLWPNTIPRGGVLATQRL 649 Query 654 LDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFF 713 LDELDGVT+ AS RAPLLAEERRLLV AMGRARRRLLVTAVD+DAGGGG E LPSAFFF Sbjct 650 LDELDGVTQSASARAPLLAEERRLLVAAMGRARRRLLVTAVDNDAGGGGQEPALPSAFFF 709 Query 714 EIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLA 773 EIA+ ADG GEP A Q SAPRVLSAAAVVGRLR VVCAP VDDA R CAATQLARLA Sbjct 710 EIARLADGGGEPAAAQAESAPRVLSAAAVVGRLRAVVCAPDGTVDDAARACAATQLARLA 769 Query 774 KAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRE 833 AGV GADP WHGL PVSTS+PL S D+VTLTPS+LQ L++CPLRWL ERHGG RE Sbjct 770 MAGVAGADPDGWHGLIPVSTSEPLYGSGDVVTLTPSSLQTLSECPLRWLTERHGGAKPRE 829 Query 834 LPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWR 893 L SAVGSVLHAL A PGRSE+ LLAELDRVW LPF A WYS+NELARHRAMIQ+FV+WR Sbjct 830 LRSAVGSVLHALIAGPGRSEAHLLAELDRVWRRLPFDASWYSSNELARHRAMIQSFVEWR 889 Query 894 AQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVS 953 A++R ELTEVGVE+++DG L+ KIRLRGR DRLERD AGRLVIVD+KTGKTPVS Sbjct 890 ARTRGELTEVGVEIEVDGVLQTRRDDGGKIRLRGRVDRLERDGAGRLVIVDVKTGKTPVS 949 Query 954 KDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEW 1013 KDDAQQHAQLAMYQLAVAEG+V AGDEPGGARLVY GK G ER+QDPLTPA RD+W Sbjct 950 KDDAQQHAQLAMYQLAVAEGMVPAGDEPGGARLVYPGKCATTGATERQQDPLTPATRDQW 1009 Query 1014 RNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHV 1050 R LVRQ A A AGPQFIARRND C++CP+RP CPAH Sbjct 1010 RGLVRQAAEAMAGPQFIARRNDSCSNCPIRPFCPAHT 1046 >gi|342861157|ref|ZP_08717806.1| helicase, UvrD/Rep family protein [Mycobacterium colombiense CECT 3035] gi|342131601|gb|EGT84871.1| helicase, UvrD/Rep family protein [Mycobacterium colombiense CECT 3035] Length=1044 Score = 1428 bits (3697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 810/1056 (77%), Positives = 882/1056 (84%), Gaps = 18/1056 (1%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 M++ W EA L PG RG + +LGGPGTGKS+LL++AA+A I AG PESVLLLTGSGR Sbjct 1 MAYTWDAEAHTVLDPGARGRLRILGGPGTGKSSLLIDAAIAQIDAGVGPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 +GM RSALTTALLRSR G RAA+ EP+VRTVH YAYAVLR+AA+RAG+A PRL+TSA Sbjct 61 IGMAERSALTTALLRSRPTGGGRAAVSEPLVRTVHGYAYAVLRRAAERAGEAPPRLVTSA 120 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGD EDGP A T WPA LRPAL+TAGFATELRNLLARCAERG+DP +L++ Sbjct 121 EQDAIIRELLAGDLEDGPRAATAWPAQLRPALSTAGFATELRNLLARCAERGVDPQDLER 180 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRR RPEW AAG+FA++YEQVMLLR AVG AAP+AT PAL AAELVGAALEAFAVDPE Sbjct 181 LGRRCRRPEWTAAGRFARQYEQVMLLRAAVGTAAPEATTPALGAAELVGAALEAFAVDPE 240 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLA ER R+R LLVDDAQQLDPQAARLVR+LAAG ELALIAGDPNQAVFGFRGGEP GLL Sbjct 241 LLATERGRIRILLVDDAQQLDPQAARLVRVLAAGAELALIAGDPNQAVFGFRGGEPAGLL 300 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 D P SVTLT S+RCAPAVARAV+GIA RLPG S GRRI+G G GSVTVR Sbjct 301 GGDGP--------SVTLTTSYRCAPAVARAVSGIAGRLPGGSAGRRIDGAGPGEGSVTVR 352 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPAV 419 LA SAHAEAA IADALRRAHL+DGVPWSQMAVIVRSVPRA RLPRALAAAGVPVA PAV Sbjct 353 LAASAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRAGARLPRALAAAGVPVAAPAV 412 Query 420 GGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQT 479 GPLS EPA RALLTVL ATADGLDG QAL LLTGPIG VDPVSLRQLRRTLQRA P +T Sbjct 413 PGPLSEEPAARALLTVLLATADGLDGQQALALLTGPIGRVDPVSLRQLRRTLQRANPDRT 472 Query 480 SRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQR 539 F +LLVE L G A P GP ALR+VRAVL AAAR HR+G DPR+TLWAAW R Sbjct 473 PADFAELLVEALSGAATPPGPQFAALRKVRAVLDAAARSHRAGD----DPRYTLWAAWHR 528 Query 540 SGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLP 599 SGLQRRWL SE GG AA QATRDLE+VTALFD+TD YVSRTSGASLRGLVEH+ AL LP Sbjct 529 SGLQRRWLTVSERGGPAAAQATRDLESVTALFDVTDDYVSRTSGASLRGLVEHIAALALP 588 Query 600 VVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDG 659 PEP AP EQV VLSAHAALGHEWD VVIAGLQDGLWPNTVPRGGVL TQRLLD LDG Sbjct 589 AAAPEPVAPAEQVRVLSAHAALGHEWDFVVIAGLQDGLWPNTVPRGGVLATQRLLDVLDG 648 Query 660 VTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWA 719 V DAS+RAPLLAEERRLLV AMGRARRRLLVTAVDSD GG G EA LPS FF EIA+WA Sbjct 649 VGADASVRAPLLAEERRLLVAAMGRARRRLLVTAVDSDTGGAGLEAALPSVFFAEIARWA 708 Query 720 DGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPG 779 D D + QPVSAPR+LSAAA+VGRLR VVCAP AVD+ RDCAATQLARLAKAGVPG Sbjct 709 DDDADDTGAQPVSAPRLLSAAALVGRLRGVVCAPEGAVDELARDCAATQLARLAKAGVPG 768 Query 780 ADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVG 839 ADP+ WHGL PVSTS+PL S D+VTLTPSTLQ LNDCPLRWLAERHGG R++ SA+G Sbjct 769 ADPAGWHGLTPVSTSEPLRGSGDVVTLTPSTLQTLNDCPLRWLAERHGGAAPRDVRSAIG 828 Query 840 SVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSE 899 SV+HAL AEP RS+++LLAELDR W HLPF AQW+S NELARHRAM++AF++WR Q+R Sbjct 829 SVVHALIAEPQRSQAELLAELDRAWKHLPFAAQWHSDNELARHRAMLEAFIEWRVQTRGA 888 Query 900 LTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQ 959 LTEVGVE +I+G + G G ++RLRGR DRLERD AGRLVIVDIKTGKTPVSKDDAQQ Sbjct 889 LTEVGVEAEIEGTVATGDGG--EVRLRGRVDRLERDAAGRLVIVDIKTGKTPVSKDDAQQ 946 Query 960 HAQLAMYQLAVAEGLVRAGD---EPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNL 1016 HAQLAMYQLAVAEGLV G EPGGARLVYVGK+GAAGVAER+QDPLT AARDEWR + Sbjct 947 HAQLAMYQLAVAEGLVDNGSGNAEPGGARLVYVGKAGAAGVAEREQDPLTAAARDEWREV 1006 Query 1017 VRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 + + A AT+GPQFIARRNDGCTHCP+RP CPAH G Sbjct 1007 IGRAAGATSGPQFIARRNDGCTHCPIRPNCPAHADG 1042 >gi|289759337|ref|ZP_06518715.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T85] gi|289714901|gb|EFD78913.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T85] Length=729 Score = 1425 bits (3689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 727/729 (99%), Positives = 729/729 (100%), Gaps = 0/729 (0%) Query 327 VARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADALRRAHLIDGVP 386 +ARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADALRRAHLIDGVP Sbjct 1 MARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADALRRAHLIDGVP 60 Query 387 WSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLEATADGLDGD 446 WSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLEATADGLDGD Sbjct 61 WSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLEATADGLDGD 120 Query 447 QALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALR 506 QALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALR Sbjct 121 QALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALR 180 Query 507 RVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLET 566 RVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLET Sbjct 181 RVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLET 240 Query 567 VTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWD 626 VTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWD Sbjct 241 VTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWD 300 Query 627 LVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRAR 686 LVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRAR Sbjct 301 LVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRAR 360 Query 687 RRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRL 746 RRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRL Sbjct 361 RRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRL 420 Query 747 RVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTL 806 RVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTL Sbjct 421 RVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTL 480 Query 807 TPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGH 866 TPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGH Sbjct 481 TPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGH 540 Query 867 LPFGAQWYSANELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLR 926 LPFGAQWYSANELARHRAMIQAFVQWRAQSRSELT+VGVEVDIDGALEDGSGQARKIRLR Sbjct 541 LPFGAQWYSANELARHRAMIQAFVQWRAQSRSELTKVGVEVDIDGALEDGSGQARKIRLR 600 Query 927 GRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARL 986 GRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARL Sbjct 601 GRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARL 660 Query 987 VYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGC 1046 VYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGC Sbjct 661 VYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGC 720 Query 1047 PAHVRGSAP 1055 PAHVRGSAP Sbjct 721 PAHVRGSAP 729 >gi|183981381|ref|YP_001849672.1| ATP-dependent DNA helicase [Mycobacterium marinum M] gi|183174707|gb|ACC39817.1| ATP-dependent DNA helicase [Mycobacterium marinum M] Length=1057 Score = 1422 bits (3682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 813/1061 (77%), Positives = 882/1061 (84%), Gaps = 20/1061 (1%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MS WG EA L PG RG V VLGGPGTGKS LLV+AA+AHI AG DPESVLLLTGSGR Sbjct 1 MSLSWGAEARELLTPGSRGLVRVLGGPGTGKSALLVQAAIAHIAAGADPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 MGM ARS+LTTALLRS T G RAA+REP+VR+VHSYAYAVLR+AA+R GDA PRLLTSA Sbjct 61 MGMWARSSLTTALLRSHTTGTGRAAVREPLVRSVHSYAYAVLRRAAERTGDAPPRLLTSA 120 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGD EDGP+A + WP HL PALTTAGFATELRNLLARCAERG+DP+EL++ Sbjct 121 EQDAIIRELLAGDLEDGPSARSAWPRHLLPALTTAGFATELRNLLARCAERGVDPMELER 180 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRR GRPEW AAG+FA++YEQVMLLR AVG A PQATAPAL AAELVG+ALEAFA DPE Sbjct 181 LGRRSGRPEWAAAGRFARQYEQVMLLRAAVGTATPQATAPALGAAELVGSALEAFASDPE 240 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAERAR+R LLVDDAQQLDPQAARLV +LAAG E ALIAGDPNQAVFGFRGGEP GLL Sbjct 241 LLAAERARLRFLLVDDAQQLDPQAARLVEVLAAGAEFALIAGDPNQAVFGFRGGEPAGLL 300 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 P+VTLT+SHRCAPAVARAV+GIARRLPG S GR I+GTGTE GSVTVR Sbjct 301 G-----GPLDGGPAVTLTMSHRCAPAVARAVSGIARRLPGGSAGRHIDGTGTEDGSVTVR 355 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPR-AVRLPRALAAAGVPVAPPAV 419 LA +AHAEAA IADALRRAHL+DGVPWSQMAVIVRSVPR A RLPRALAAAGVPV+ P + Sbjct 356 LAATAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRVAARLPRALAAAGVPVSIPPI 415 Query 420 GGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQT 479 GG L+ EPAV ALLTVL ATA+GL+ DQAL L+TGPIG VDPV+LRQLRRTL+RA G++ Sbjct 416 GGSLAEEPAVGALLTVLAATAEGLNADQALALITGPIGRVDPVTLRQLRRTLRRAVAGRS 475 Query 480 SRKFGDLLVEVLGGDAPPS----------GPGSRALRRVRAVLTAAARCHRSGSLGGQDP 529 FGDLLV L D P+ GP LRRVRAVL AA RCHR+G QDP Sbjct 476 PEDFGDLLVATLSEDGRPAVGSAGSNQPPGPQFGPLRRVRAVLAAATRCHRAG----QDP 531 Query 530 RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGL 589 R+ LWAAW RSGLQ RWLAA + GG A VQATR+LE VTALFDITD YVSRTSGASL GL Sbjct 532 RYILWAAWHRSGLQNRWLAAIDRGGPAGVQATRNLEAVTALFDITDQYVSRTSGASLSGL 591 Query 590 VEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLG 649 +EHV ALQLP V EP A EQV VLSAHAALGHEWDLVVIAGLQDGLWPNT+PRGGVL Sbjct 592 LEHVAALQLPRVSEEPVAQNEQVRVLSAHAALGHEWDLVVIAGLQDGLWPNTIPRGGVLA 651 Query 650 TQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPS 709 TQRLLDELDGV+ +AS RAPLLAEERRLL+ AMGRARR+LLVTAVD D GGG +A LPS Sbjct 652 TQRLLDELDGVSGNASARAPLLAEERRLLLAAMGRARRQLLVTAVDGDTSGGGQQAALPS 711 Query 710 AFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQL 769 FFFEIAQWA+GD + VA PVSAPRVLSAAAVVGRLR VVCAP AVDDA R CAATQL Sbjct 712 EFFFEIAQWANGDSQAVAAPPVSAPRVLSAAAVVGRLRGVVCAPDGAVDDAARQCAATQL 771 Query 770 ARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGT 829 ARLAKAGV GADP+ WHGL PVST+ L + D+VTLTPSTLQ LNDCPLRWLAERHGGT Sbjct 772 ARLAKAGVAGADPAGWHGLIPVSTTAALYGAGDVVTLTPSTLQTLNDCPLRWLAERHGGT 831 Query 830 NTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAF 889 N R+L + +GSVLHAL AEPG SE QLLAEL RVW LPF A W+S+NELARHRAMIQAF Sbjct 832 NPRDLRATIGSVLHALIAEPGASEEQLLAELARVWKLLPFEADWFSSNELARHRAMIQAF 891 Query 890 VQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGK 949 V+WR Q+RSELTEVGVE+DIDG L+ IRLRGR DRLERD AGRLVIVDIKT K Sbjct 892 VEWRGQTRSELTEVGVEIDIDGVLDAARDDGGAIRLRGRVDRLERDGAGRLVIVDIKTAK 951 Query 950 TPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAA 1009 TPVSKDDAQQ+AQLAMYQLAVAEG+V AG EPGGARLVY GKS AAG A+R QDPLTPAA Sbjct 952 TPVSKDDAQQNAQLAMYQLAVAEGMVEAGAEPGGARLVYPGKSAAAGAAQRDQDPLTPAA 1011 Query 1010 RDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHV 1050 RD+WRNLVRQ A A AGP FIARRNDGC+HCP+RP CPAH Sbjct 1012 RDQWRNLVRQAAEAAAGPHFIARRNDGCSHCPIRPSCPAHT 1052 >gi|118618003|ref|YP_906335.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99] gi|118570113|gb|ABL04864.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99] Length=1057 Score = 1420 bits (3677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 811/1061 (77%), Positives = 880/1061 (83%), Gaps = 20/1061 (1%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MS WG EA L PG RG V VLGGPGTGKS LLV+AA+AHI AG DPESVLLLTGSGR Sbjct 1 MSLSWGAEARELLTPGSRGLVRVLGGPGTGKSALLVQAAIAHIAAGADPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 MGMRARS+LTTALLRS T G RAA+REP+VR+VHSYAYAVLR+AA+R GDA PRLLTSA Sbjct 61 MGMRARSSLTTALLRSHTTGTGRAAVREPLVRSVHSYAYAVLRRAAERTGDAPPRLLTSA 120 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGD EDGP+A + WP HL PALTTAGFATELRNLLARCAERG+DP+EL++ Sbjct 121 EQDAIIRELLAGDLEDGPSAGSAWPRHLLPALTTAGFATELRNLLARCAERGVDPMELER 180 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRR GRPEW AAG+FA++YEQVMLLR AVG A PQATAPAL AELVG+ALEAFA DPE Sbjct 181 LGRRSGRPEWAAAGRFARQYEQVMLLRAAVGTATPQATAPALGVAELVGSALEAFASDPE 240 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAERAR+R LLVDDAQQLDPQAARLV +LAAG E ALIAGDPNQAVFGFRGGEP GLL Sbjct 241 LLAAERARLRFLLVDDAQQLDPQAARLVEVLAAGAEFALIAGDPNQAVFGFRGGEPAGLL 300 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 P+VTLT+SHRCAPAVARAV+GIARRLPG S GR I+GTGTE GSVTVR Sbjct 301 G-----GPLDGGPAVTLTMSHRCAPAVARAVSGIARRLPGGSAGRHIDGTGTEDGSVTVR 355 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPR-AVRLPRALAAAGVPVAPPAV 419 LA +AHAEAA IADALRRAHL+DGVPWSQMAVIVRSVPR A RLPRALAAAGVPV+ P + Sbjct 356 LAATAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRVAARLPRALAAAGVPVSIPPI 415 Query 420 GGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQT 479 GG L+ EPAV ALLTVL ATA+GL+ DQAL L+TGPIG VDPV LRQLRRTL+RA G++ Sbjct 416 GGSLAEEPAVGALLTVLAATAEGLNADQALALITGPIGRVDPVRLRQLRRTLRRAVAGRS 475 Query 480 SRKFGDLLVEVLGGDAPPS----------GPGSRALRRVRAVLTAAARCHRSGSLGGQDP 529 FGDLLV L D P+ GP LRRVRAVL AA RCHR+G QDP Sbjct 476 PEDFGDLLVATLSEDGRPAVGSAGSNQPPGPQFGPLRRVRAVLAAATRCHRAG----QDP 531 Query 530 RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGL 589 R+ LWAAW RSGLQ RWLAA + GG A VQATR+LE VTALFDITD YVSRTSGASL GL Sbjct 532 RYILWAAWHRSGLQNRWLAAIDRGGPAGVQATRNLEAVTALFDITDQYVSRTSGASLSGL 591 Query 590 VEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLG 649 +EHV ALQLP V EP A EQV VLSAHAALGHEWDLVVIAGLQDG WPNT+PRGGVL Sbjct 592 LEHVAALQLPRVSEEPVAQNEQVGVLSAHAALGHEWDLVVIAGLQDGSWPNTIPRGGVLA 651 Query 650 TQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPS 709 TQRLLDELDGV+ +AS RAPLLAEERRLL+ AMGRARR+LLVTAVD D GGG +A LPS Sbjct 652 TQRLLDELDGVSGNASARAPLLAEERRLLLAAMGRARRQLLVTAVDGDTSGGGQQAALPS 711 Query 710 AFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQL 769 FFFEIAQWA+GD + VA PVSAPRVLSAAAVVGRLR VVCAP AVDDA R CAATQL Sbjct 712 EFFFEIAQWANGDSQAVAAPPVSAPRVLSAAAVVGRLRGVVCAPDGAVDDAARQCAATQL 771 Query 770 ARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGT 829 ARLAKAGV GADP+ WHGL PVST+ L + D+VTLTPSTLQ LNDCPLRWLAERHGGT Sbjct 772 ARLAKAGVAGADPAGWHGLIPVSTTAALYGAGDVVTLTPSTLQTLNDCPLRWLAERHGGT 831 Query 830 NTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAF 889 N R+L + +GSVLHAL AEPG SE QLLAEL RVW LPF A W+S+NELARHRAMIQAF Sbjct 832 NPRDLRATIGSVLHALIAEPGASEEQLLAELARVWKLLPFEADWFSSNELARHRAMIQAF 891 Query 890 VQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGK 949 V+WR Q+RSELTEVGVE+DIDG L+ IRLRGR DRLERD AGRLVI+DIKT K Sbjct 892 VEWRGQTRSELTEVGVEIDIDGVLDAARDDGGAIRLRGRVDRLERDGAGRLVILDIKTAK 951 Query 950 TPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAA 1009 TPVSKDDAQQ+AQLAMYQLAVAEG+V AG EPGGARLVY GKS AAG A+R QDPLTPAA Sbjct 952 TPVSKDDAQQNAQLAMYQLAVAEGMVEAGAEPGGARLVYPGKSAAAGAAQRDQDPLTPAA 1011 Query 1010 RDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHV 1050 RD+WRNLVRQ A A AGP FIARRNDGC+HCP+RP CPAH Sbjct 1012 RDQWRNLVRQAAEAAAGPHFIARRNDGCSHCPIRPSCPAHT 1052 >gi|108798374|ref|YP_638571.1| UvrD/REP helicase [Mycobacterium sp. MCS] gi|119867471|ref|YP_937423.1| UvrD/REP helicase [Mycobacterium sp. KMS] gi|108768793|gb|ABG07515.1| UvrD/REP helicase [Mycobacterium sp. MCS] gi|119693560|gb|ABL90633.1| UvrD/REP helicase [Mycobacterium sp. KMS] Length=1051 Score = 1212 bits (3136), Expect = 0.0, Method: Compositional matrix adjust. Identities = 690/1057 (66%), Positives = 799/1057 (76%), Gaps = 43/1057 (4%) Query 13 LAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTA 72 L PG RG V + GGPGTGKSTLLV+ A AHI AG DPESVLLLTGS + AR+A+T Sbjct 20 LEPGRRGVVRLFGGPGTGKSTLLVDTAAAHIAAGVDPESVLLLTGSASLRSAARAAVTRR 79 Query 73 LLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAG 132 LL +G R +R P+VRTVHSYA+AVLR AAQR GDA PRL+TSAEQD IIRELLAG Sbjct 80 LL----DGGARQVVRAPLVRTVHSYAFAVLRLAAQRNGDAPPRLITSAEQDGIIRELLAG 135 Query 133 DAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIA 192 D EDG + WPA LRPALTTAGFATELR+L+ARC ERG+DP+ LQ+LGR RPEW A Sbjct 136 DLEDGDRSAVAWPAALRPALTTAGFATELRDLMARCTERGVDPVALQRLGRLSRRPEWAA 195 Query 193 AGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTL 252 AG+FAQ YEQ+MLLR AVG+AAPQAT PAL AAELVGAALEAFA+D +LLAAER R+ L Sbjct 196 AGRFAQAYEQIMLLRSAVGMAAPQATTPALGAAELVGAALEAFAMDADLLAAERNRIGLL 255 Query 253 LVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPI 312 LVDDAQ LDPQAARLVR+LAAG +L + AGDP+Q+VFG+RG +P L ++ G A Sbjct 256 LVDDAQHLDPQAARLVRVLAAGADLTVFAGDPDQSVFGYRGADPALLRTEE----GSA-- 309 Query 313 PSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVG----SVTVRLAGSAHAE 368 + LT SHRCAPAVARA++GIARRLPG R E G E G SV VR+A +AHAE Sbjct 310 --IVLTRSHRCAPAVARAMSGIARRLPGP----RPEFVGNEDGRGDGSVAVRVAATAHAE 363 Query 369 AAMIADALRRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPAVGGPLSAEP 427 +A+IADALRRAHL+DGVPWS+MAVIVRS+PRA L RAL AAGVPV PA PL EP Sbjct 364 SALIADALRRAHLVDGVPWSEMAVIVRSLPRAGAPLARALTAAGVPVDLPA-AAPLVEEP 422 Query 428 AVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLL 487 A RALLTVLEATADGL G QA LL+GP+G VDPV++RQ+RR L+RA Q R+F DLL Sbjct 423 AARALLTVLEATADGLTGAQAEALLSGPVGRVDPVTMRQVRRALRRADGSQPPREFTDLL 482 Query 488 VEVLGGDAPPSGPGS----RALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQ 543 V+ L G P + S R LRRVR+VL AA R G DPRHTLW AW RSGLQ Sbjct 483 VDALTGPLPAASDVSAELQRPLRRVRSVLAAARRSVDDG----LDPRHTLWQAWHRSGLQ 538 Query 544 RRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRP 603 RRWLAASE GGAA QA RDL+ VTALFD+ D YV+RT+GAS+RGL++HV AL LP R Sbjct 539 RRWLAASERGGAAGAQADRDLDAVTALFDVADQYVTRTAGASVRGLLDHVAALGLPPGRR 598 Query 604 EPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKD 663 E V VLSAHAAL EWDLVV+AGLQ+GLWPNT+PRGGVLGTQRL+D LDGVT Sbjct 599 GERRDPEAVAVLSAHAALAGEWDLVVVAGLQEGLWPNTIPRGGVLGTQRLVDVLDGVTDS 658 Query 664 AS----MRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWA 719 AS RAPLLAEERRLL+ A+GRARRR+LVTAVDSD+G EA+LPS F E+ A Sbjct 659 ASDAVSTRAPLLAEERRLLIAALGRARRRVLVTAVDSDSGA---EAMLPSPFCQELTALA 715 Query 720 D--GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGV 777 GDG P PV APRVL+ +A+VGRLR VVCAP AVDDA R+CAA QLARLA AGV Sbjct 716 TDPGDGPPA---PVRAPRVLAPSALVGRLRAVVCAPDGAVDDAARECAAAQLARLAAAGV 772 Query 778 PGADPSEWHGLAPVSTSDPL-CDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPS 836 PGADP +WH + +ST +PL D +VTL+PSTLQAL DCPLRWL ERHGG + R++ S Sbjct 773 PGADPGQWHAMTALSTDEPLWNDEQQVVTLSPSTLQALTDCPLRWLLERHGGRDGRDVRS 832 Query 837 AVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQS 896 AVGS+LHAL +EPGR+ESQLL +L+RVW LP+ AQW++ NEL RH+AM+ AF QWRAQ+ Sbjct 833 AVGSLLHALVSEPGRTESQLLNDLERVWADLPYEAQWHADNELTRHQAMLSAFEQWRAQT 892 Query 897 RSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDD 956 R ELTEVG E+D+DG + D +R+RGR DRLERD AGRLV+VDIKTGK+PV+KDD Sbjct 893 RRELTEVGTEIDVDGVVCDADDGRPAVRVRGRLDRLERDSAGRLVVVDIKTGKSPVTKDD 952 Query 957 AQQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNL 1016 AQ+HAQLAMYQLAVA GL+ GD PGG +LVY+GKSGAAG ER+QD LTP +WR Sbjct 953 AQRHAQLAMYQLAVAAGLLAEGDVPGGGKLVYLGKSGAAGPTEREQDALTPETVAQWRQD 1012 Query 1017 VRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGS 1053 V + AAAT GP F+AR ND C HCP+R CPA G Sbjct 1013 VGEAAAATQGPGFVARVNDSCAHCPVRSSCPAQSAGE 1049 >gi|126434058|ref|YP_001069749.1| UvrD/REP helicase [Mycobacterium sp. JLS] gi|126233858|gb|ABN97258.1| UvrD/REP helicase [Mycobacterium sp. JLS] Length=1051 Score = 1204 bits (3115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 686/1052 (66%), Positives = 795/1052 (76%), Gaps = 33/1052 (3%) Query 13 LAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTA 72 L PG RG V + GGPGTGKSTLLV+ A AHI AG DPESVLLLTGS + AR+A+T Sbjct 20 LEPGQRGVVRLFGGPGTGKSTLLVDTAAAHIAAGVDPESVLLLTGSASLRSAARAAVTRR 79 Query 73 LLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAG 132 LL +G R +R P+VRTVHSYA+AVLR AAQR GDA PRL+TSAEQD IIRELLAG Sbjct 80 LL----DGGARQVVRAPLVRTVHSYAFAVLRLAAQRNGDAPPRLITSAEQDGIIRELLAG 135 Query 133 DAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIA 192 D EDG + WPA LRPALTTAGFATELR+L+ARC ERG+DP+ LQ+LGR RPEW A Sbjct 136 DLEDGDRSAVAWPAALRPALTTAGFATELRDLMARCTERGVDPVALQRLGRLSRRPEWAA 195 Query 193 AGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTL 252 AG+FAQ YEQ+MLLR AVG+AAPQAT PAL AAELVGAALEAFA+D +LLAAER+R+ L Sbjct 196 AGRFAQAYEQIMLLRSAVGMAAPQATTPALGAAELVGAALEAFAMDADLLAAERSRIGLL 255 Query 253 LVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPI 312 LVDDAQ LDPQAARLVR+LAAG +L++ AGDP+Q+VFGFRG +P L ++ G A Sbjct 256 LVDDAQHLDPQAARLVRVLAAGADLSVFAGDPDQSVFGFRGADPALLHMEE----GSA-- 309 Query 313 PSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMI 372 V LT SHRCA AVARA++GIARRLPG+ G GSV VR+A +AHAE+A+I Sbjct 310 --VVLTRSHRCASAVARAISGIARRLPGQRQEFVGSEDGGGDGSVAVRVAATAHAESALI 367 Query 373 ADALRRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPAVGGPLSAEPAVRA 431 ADALRRAHL+DGV WS+MAVIVRS+PRA L RAL AAGVPV PA PL EPA RA Sbjct 368 ADALRRAHLVDGVAWSEMAVIVRSLPRAGAPLARALTAAGVPVDLPA-AAPLVEEPAARA 426 Query 432 LLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVL 491 LLTVLEATADGL G QA LL+GP+G VDPV++RQ+RR L+RA Q R+F DLLVE L Sbjct 427 LLTVLEATADGLTGAQAEALLSGPVGRVDPVTMRQVRRALRRADGSQPPREFTDLLVEAL 486 Query 492 GGDAPPSGPGS----RALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWL 547 G P + S R LRRVR+VL AA R G DPRHTLW AW RSGLQRRWL Sbjct 487 TGPLPAASDVSAELQRPLRRVRSVLAAARRSVDDG----LDPRHTLWQAWHRSGLQRRWL 542 Query 548 AASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAA 607 AASE GGAA +A RDL+ VTALFD+ D YV+RT+GAS+RGL++HV AL LP R Sbjct 543 AASERGGAAGARADRDLDAVTALFDVADQYVTRTAGASVRGLLDHVAALGLPPGRRGERR 602 Query 608 PTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDAS-- 665 E V VLSAHAAL EWD VVIAGLQ+GLWPNT+PRGGVLGTQRL+D LDGVT AS Sbjct 603 DPEAVAVLSAHAALAGEWDFVVIAGLQEGLWPNTIPRGGVLGTQRLVDVLDGVTDSASDA 662 Query 666 --MRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWA-DGD 722 RAPLLAEERRLL+ A GRARRR+LVTAVDSD+G EA+LPS F E+ A D D Sbjct 663 VSTRAPLLAEERRLLIAAFGRARRRVLVTAVDSDSGA---EALLPSPFCQELTALATDPD 719 Query 723 GEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADP 782 P A P+ APRVL+ +A+VGRLR VVCAP AVDDA R+CAA QLARLA AGVPGADP Sbjct 720 DGPPA--PLRAPRVLAPSALVGRLRAVVCAPDGAVDDAARECAAAQLARLAAAGVPGADP 777 Query 783 SEWHGLAPVSTSDPL-CDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSV 841 +WH + +ST +PL D +VTL+PSTLQAL DCPLRWL ERHGG + R++ SAVGS+ Sbjct 778 GQWHAMTTLSTDEPLWNDEQQVVTLSPSTLQALTDCPLRWLLERHGGRDGRDVRSAVGSL 837 Query 842 LHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSELT 901 LHAL +EPGR+ESQLL +L+RVW LP+ AQW++ NEL RH+AM+ AF QWRAQ+R ELT Sbjct 838 LHALVSEPGRTESQLLNDLERVWADLPYEAQWHADNELTRHQAMLSAFEQWRAQTRRELT 897 Query 902 EVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA 961 EVG E+D+DG + D +R+RGR DRLERD AGRLV+VDIKTGK+PV+KDDAQ+HA Sbjct 898 EVGTEIDVDGVVCDADDGRPAVRVRGRLDRLERDSAGRLVVVDIKTGKSPVTKDDAQRHA 957 Query 962 QLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQLA 1021 QLAMYQLAVA GL+ GD PGG +LVY+GKSGAAG ER+QD LTP +WR V + A Sbjct 958 QLAMYQLAVAAGLLAEGDVPGGGKLVYLGKSGAAGPTEREQDALTPDTVAQWRQDVGEAA 1017 Query 1022 AATAGPQFIARRNDGCTHCPLRPGCPAHVRGS 1053 AAT GP F+AR ND C HCP+R CPA G Sbjct 1018 AATQGPGFVARVNDSCAHCPVRSSCPAQSAGE 1049 >gi|289555475|ref|ZP_06444685.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605] gi|289440107|gb|EFD22600.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605] Length=656 Score = 1197 bits (3098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 605/605 (100%), Positives = 605/605 (100%), Gaps = 0/605 (0%) Query 451 LLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRA 510 LLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRA Sbjct 52 LLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRA 111 Query 511 VLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTAL 570 VLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTAL Sbjct 112 VLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTAL 171 Query 571 FDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVI 630 FDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVI Sbjct 172 FDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVI 231 Query 631 AGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLL 690 AGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLL Sbjct 232 AGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLL 291 Query 691 VTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVV 750 VTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVV Sbjct 292 VTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVV 351 Query 751 CAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPST 810 CAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPST Sbjct 352 CAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPST 411 Query 811 LQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFG 870 LQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFG Sbjct 412 LQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFG 471 Query 871 AQWYSANELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRAD 930 AQWYSANELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRAD Sbjct 472 AQWYSANELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRAD 531 Query 931 RLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVG 990 RLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVG Sbjct 532 RLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVG 591 Query 991 KSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHV 1050 KSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHV Sbjct 592 KSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHV 651 Query 1051 RGSAP 1055 RGSAP Sbjct 652 RGSAP 656 >gi|333991557|ref|YP_004524171.1| ATP-dependent DNA helicase [Mycobacterium sp. JDM601] gi|333487525|gb|AEF36917.1| ATP-dependent DNA helicase [Mycobacterium sp. JDM601] Length=1044 Score = 1196 bits (3094), Expect = 0.0, Method: Compositional matrix adjust. Identities = 688/1063 (65%), Positives = 800/1063 (76%), Gaps = 31/1063 (2%) Query 1 MSHIWGVEAG---AALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTG 57 M+ W AG AAL P RG + V GGPGTGK++LL+E A AH+ AG D +S+LLLTG Sbjct 1 MTQHWEPYAGEVAAALDPLRRGVLQVRGGPGTGKTSLLLEVAAAHVAAGADADSLLLLTG 60 Query 58 SGRMGMRARSALTTALLRSRTNGPCRA-AIREPVVRTVHSYAYAVLRKAAQRAGDALPRL 116 SGR+ AR ALT LL + GP AIREP+VRTVH YA+AVL++AA+RA A PRL Sbjct 61 SGRLPAAARGALTATLLAA--GGPAATRAIREPLVRTVHGYAFAVLQRAARRAEAAPPRL 118 Query 117 LTSAEQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPL 176 +T AEQD++IRELLAGD WP+ L AL T GFATELR+L+ARCAERG+DP Sbjct 119 VTGAEQDSVIRELLAGDG------ARAWPSSLHAALGTDGFATELRDLMARCAERGVDPA 172 Query 177 ELQQLGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFA 236 EL +LG+R RPEW AAG+FA++YEQVMLLR AVG AAPQAT PAL AAELVGAALEAFA Sbjct 173 ELVRLGKRYRRPEWTAAGRFARQYEQVMLLRAAVGTAAPQATTPALGAAELVGAALEAFA 232 Query 237 VDPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEP 296 DP LL ER+R+R LLVDDAQ LDPQAARLVR+LAAG + +IAGDP+QAVFGFRG EP Sbjct 233 ADPGLLVEERSRLRLLLVDDAQLLDPQAARLVRVLAAGVQRTVIAGDPDQAVFGFRGAEP 292 Query 297 TGLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGS 356 LL+DDP P G P+V LT SHRCAPAV RAV IA RLPGRS RR+E G + GS Sbjct 293 AALLSDDPTPGGA---PTVHLTASHRCAPAVIRAVNTIAARLPGRSATRRLEAVGPDAGS 349 Query 357 VTVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAV-RLPRALAAAGVPVA 415 VTVR A S HAEAA+IAD LRRAHL+DGVPWSQMAVIVRSVPRA RLPR L AAGVPVA Sbjct 350 VTVRTAVSGHAEAALIADTLRRAHLVDGVPWSQMAVIVRSVPRAAARLPRTLTAAGVPVA 409 Query 416 PPAVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRAR 475 P GG L+ +PAV ALLTVL+ A+G+DG +AL LLTGPIG VDP+SLRQL+R L+R Sbjct 410 LPIAGGLLAQQPAVAALLTVLQCAAEGVDGPRALALLTGPIGRVDPISLRQLQRVLRRGA 469 Query 476 PGQTSRKFGDLLVEVLGGDA---PPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHT 532 GD LV VL G+A P + +RALRRVRAVL AAAR H G +DP HT Sbjct 470 AADPESDPGDRLVAVLRGEAGQLPVAH--ARALRRVRAVLQAAARSHADG----RDPHHT 523 Query 533 LWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEH 592 LW AW RSGLQ+RWL+A++ GG A QA RDL+ VTALFD+T+HYV+RT+GA+L GL+EH Sbjct 524 LWQAWNRSGLQQRWLSATQRGGPAGAQAGRDLDAVTALFDLTEHYVARTAGATLTGLIEH 583 Query 593 VTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQR 652 VTA+QL + R E AA E V VLSAHAALG EWDLVVIAG+Q+GLWPNTVPRGGVLGTQR Sbjct 584 VTAMQLVMPRTEAAAGVEAVEVLSAHAALGREWDLVVIAGVQEGLWPNTVPRGGVLGTQR 643 Query 653 LLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFF 712 LLD L G+ + S RAPLLAEERRLLV AMGRAR RL++TAVD + GG E LPS F Sbjct 644 LLDSLHGLGDEVSARAPLLAEERRLLVAAMGRARHRLMITAVDGEGDGGATEEQLPSEFH 703 Query 713 FEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARL 772 E+A A DG P PV+AP VLSAA VVGRLR VCAP V D++R AATQLARL Sbjct 704 AELAACATPDGVPAPAPPVAAPPVLSAAGVVGRLRAAVCAPDGVVTDSERADAATQLARL 763 Query 773 AKAGVPGADPSEWHGLAPVSTSDPLCDSD--DLVTLTPSTLQALNDCPLRWLAERHGGTN 830 +AGVPGADP++WHG APVST +PL ++ +VTL+PS LQ+L DCPLRWLAERHGGT+ Sbjct 764 VRAGVPGADPADWHGTAPVSTEEPLWRTEGGQVVTLSPSALQSLLDCPLRWLAERHGGTD 823 Query 831 TRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFV 890 R+L S +GS++HAL AE S +LLAELDR W LPF + W+SANE RHRAMI+ F+ Sbjct 824 GRDLRSTIGSLMHALVAESAVSREELLAELDRAWRQLPFESPWHSANEQDRHRAMIETFL 883 Query 891 QWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKT 950 WRAQ+R ELTEVG E+ DG ++ G G +RLRGR DR+ERD AGRLV+VD+KT KT Sbjct 884 AWRAQTRDELTEVGTEIAFDGVIDAGEG----VRLRGRIDRIERDAAGRLVVVDVKTAKT 939 Query 951 PVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAAR 1010 PVSKDDAQQHAQLA+YQLAV GLV ++PGGARLVY K+ A G ER+QDPLTP + Sbjct 940 PVSKDDAQQHAQLAVYQLAVEAGLVGPDEQPGGARLVYPAKTAAGGATEREQDPLTPESG 999 Query 1011 DEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGS 1053 +WR + AAATAGPQF AR NDGC HCP+RP CPAH GS Sbjct 1000 RDWRERIAAAAAATAGPQFTARVNDGCRHCPIRPICPAHTGGS 1042 >gi|120402800|ref|YP_952629.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1] gi|119955618|gb|ABM12623.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1] Length=1038 Score = 1195 bits (3092), Expect = 0.0, Method: Compositional matrix adjust. Identities = 667/1044 (64%), Positives = 789/1044 (76%), Gaps = 35/1044 (3%) Query 17 LRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALLRS 76 +RG V VLGGPGTGKS+LLV+ A AHI AG DPESVLLLTGS R+ +AR+A+TTALL Sbjct 18 VRGTVRVLGGPGTGKSSLLVDTAAAHIAAGCDPESVLLLTGSSRLSAQARAAITTALL-- 75 Query 77 RTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAED 136 R+A+REP+VRTVHSYA+AVLR AAQR G PRL+TSAEQD IIRELLAGD ED Sbjct 76 --GAGARSAVREPLVRTVHSYAFAVLRLAAQRNGSPPPRLITSAEQDGIIRELLAGDVED 133 Query 137 GPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQF 196 G A+ WP LRPAL+T GFATELR+L+ARC+ERG+DPL LQ++GR GRPEW AAG+F Sbjct 134 GDASPVRWPERLRPALSTVGFATELRDLMARCSERGVDPLALQRIGRAAGRPEWQAAGRF 193 Query 197 AQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDD 256 AQ YEQVMLLR AVG+AAPQAT PAL AAELVGAALEAFA D +LLAAERARV+ LLVDD Sbjct 194 AQAYEQVMLLRAAVGMAAPQATVPALGAAELVGAALEAFATDADLLAAERARVQLLLVDD 253 Query 257 AQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVT 316 AQ LDPQAARLV +LA G ELA+IAGDP+Q VFG+RG +P L + P ++T Sbjct 254 AQHLDPQAARLVEVLATGAELAVIAGDPHQTVFGYRGADPALLRGEGP---------ALT 304 Query 317 LTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADAL 376 LT SHRCA VA A+ + RRLPG R G+ GSVTV++A S HAE+A+IADAL Sbjct 305 LTRSHRCANPVADAIGAVGRRLPGAEATREFTGSDAP-GSVTVQIAASPHAESALIADAL 363 Query 377 RRAHLIDGVPWSQMAVIVRSVPR-AVRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTV 435 RRAHL+DGVPWSQMAVIVRSVPR L RAL AAGVP+ P PL+ +PAVRALLTV Sbjct 364 RRAHLVDGVPWSQMAVIVRSVPRMGAALGRALTAAGVPLDLPQPEVPLAEQPAVRALLTV 423 Query 436 LEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGGDA 495 LEATADGLDG++AL L+TGPIG VDP+SLRQLRR L+RA P ++ F DLLV+ L D Sbjct 424 LEATADGLDGERALALVTGPIGRVDPISLRQLRRALRRAAP-ESPGGFSDLLVDALQRDT 482 Query 496 PPSGPG-SRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHGG 554 P G +RALRRV AVLTAA R R GS DPRHTLW AW RSGLQ+RWLAASE GG Sbjct 483 PALADGQARALRRVCAVLTAARRSAREGS----DPRHTLWQAWHRSGLQKRWLAASERGG 538 Query 555 AAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMV 614 A QA RDL+ VTA+FD+ + YV+RT+GASLRGLV+H+TAL LP R + AAP + V + Sbjct 539 PAGAQADRDLDAVTAMFDVAEQYVARTAGASLRGLVDHITALALPPARRDEAAP-DAVAL 597 Query 615 LSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVT----KDASMRAPL 670 LSAH+ALGHEW+ VV+AG+Q+GLWPN PRGGVL TQ+L+D +DGV S RAPL Sbjct 598 LSAHSALGHEWEFVVLAGVQEGLWPNVSPRGGVLATQQLVDVIDGVCAPGQHTLSSRAPL 657 Query 671 LAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQ- 729 LAEE RLL+ AMGRAR RLLVTAVDSD G +A+LPS+F E+A A EP + Sbjct 658 LAEEWRLLIAAMGRARSRLLVTAVDSDCG---DDAMLPSSFCHELAALAT---EPQSQPA 711 Query 730 -PVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGL 788 PV APRVL+ +A+VGRLR VVCA AVDD +RDCAA QLARLA+AGV GADP+ W+G Sbjct 712 PPVRAPRVLAPSALVGRLRSVVCAAPGAVDDVERDCAAAQLARLAEAGVHGADPASWYGS 771 Query 789 APVSTSDPLC-DSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFA 847 +S+++PL D + +VTL+PSTLQ L+DCPLRWL ERHGG+ R++ S +GS++HAL + Sbjct 772 RELSSAEPLWEDGEQVVTLSPSTLQMLSDCPLRWLLERHGGSRGRDVRSTLGSLVHALVS 831 Query 848 EPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSELTEVGVEV 907 E GR+ESQLL L++VW LPF AQWYS NE RH M+ F++WR +R ELTEVG E+ Sbjct 832 ESGRTESQLLNGLEKVWEELPFDAQWYSDNERVRHLEMLSTFLRWREGTRGELTEVGTEI 891 Query 908 DIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQ 967 ++DG + G+ +RLRGR DRLERD GRLV++D+KTGK+PVSKDDAQ HAQLAMYQ Sbjct 892 EVDGQIAAPDGELPAVRLRGRLDRLERDSEGRLVVIDLKTGKSPVSKDDAQSHAQLAMYQ 951 Query 968 LAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAGP 1027 LAVA GL+ GDEPGG RLVY+GK+ G ER QD LTP R EW V + AAAT GP Sbjct 952 LAVAAGLLADGDEPGGGRLVYLGKTTGGGATERHQDALTPDGRAEWDEQVHRAAAATQGP 1011 Query 1028 QFIARRNDGCTHCPLRPGCPAHVR 1051 QF AR NDGC HCP+R CPA R Sbjct 1012 QFTARVNDGCAHCPVRAMCPAQNR 1035 >gi|145225244|ref|YP_001135922.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] gi|145217730|gb|ABP47134.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] Length=1038 Score = 1160 bits (3001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 653/1049 (63%), Positives = 774/1049 (74%), Gaps = 38/1049 (3%) Query 17 LRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALLRS 76 LRG V VLGGPGTGKS+LLV+ AVAHI AG DPESVLLLTGS R+ ++ R+++T+ALL Sbjct 18 LRGTVRVLGGPGTGKSSLLVDTAVAHIAAGCDPESVLLLTGSARLSVQVRASITSALL-- 75 Query 77 RTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAED 136 RAA+REP+VRTVHSYA+ VLR AAQR G PRL+TSAEQD IIRELLAGD ED Sbjct 76 --GAGGRAAVREPLVRTVHSYAFGVLRLAAQRNGSPPPRLITSAEQDGIIRELLAGDVED 133 Query 137 GPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQF 196 GPA+ WP LRPAL+T GFATELR+L+ARC+ERG+DP+ LQ++GR GRPEW AAG+F Sbjct 134 GPASPVRWPEQLRPALSTVGFATELRDLMARCSERGIDPVALQRIGRHAGRPEWQAAGRF 193 Query 197 AQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDD 256 AQ YEQ+MLLR AVG+AAPQAT PAL AAELVGAALEAFA+D +LL+AER+RV+ LLVDD Sbjct 194 AQAYEQIMLLRSAVGMAAPQATVPALGAAELVGAALEAFAMDADLLSAERSRVQLLLVDD 253 Query 257 AQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVT 316 AQ LDPQAARLV +LAAG EL +IAGDP+Q VFG+RG +P L D P ++ Sbjct 254 AQHLDPQAARLVEVLAAGAELTVIAGDPHQTVFGYRGADPALLRGDGP---------ALI 304 Query 317 LTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADAL 376 L SHRCA +A A+ I RRLPG R G E G++ VR+A S HAE+A+IADAL Sbjct 305 LNRSHRCAAPLADAIAAITRRLPGADASREFTGRA-EQGTLAVRIAASPHAESALIADAL 363 Query 377 RRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTV 435 RRAHL+DGVPW +MAVIVRSVPR L RALAAAGVPV P PL+ +PAV+ALLTV Sbjct 364 RRAHLVDGVPWDRMAVIVRSVPRTGASLGRALAAAGVPVEDPHPDVPLANQPAVQALLTV 423 Query 436 LEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS--RKFGDLLVEVLGG 493 LEATA+ LDG++AL L+TGPIG VDPVSLRQ + R G T+ R FG+LLVE L Sbjct 424 LEATAEKLDGERALALVTGPIGRVDPVSLRQ---LRRTLRRGVTAPDRGFGELLVEALER 480 Query 494 D-APPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEH 552 D A +RALRR+RAVLT+A RS GG DPR TLW AW RSGLQ+RWLAA+E Sbjct 481 DVAALPDEHARALRRLRAVLTSA---RRSAEQGG-DPRQTLWQAWNRSGLQKRWLAAAER 536 Query 553 GGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQV 612 GG AA QA RDL+ VTALFD+ + YV RT+GASLRGL++H+T L LP R + A + V Sbjct 537 GGPAAAQAERDLDAVTALFDVAEQYVERTAGASLRGLIDHITGLSLPPARGD-ARSGDAV 595 Query 613 MVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVT---KDASMRAP 669 ++SAHAAL EWD VV+AGLQ+GLWPN PRGGVL TQ L+D +DGV + S RAP Sbjct 596 ALISAHAALSGEWDFVVLAGLQEGLWPNVSPRGGVLATQHLVDVIDGVAAPGQRLSSRAP 655 Query 670 LLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVA-- 727 LLAEERRLL+ AMGRAR R+LVTAVDSD+G EA LPS F E+A A EPV Sbjct 656 LLAEERRLLIAAMGRARSRVLVTAVDSDSG---DEAALPSPFCHELAAMAT---EPVPEP 709 Query 728 MQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHG 787 P+ APRVLS AAVVGRLR VVCA + V + +R CAA QLARLA AGV GADPS W+G Sbjct 710 ALPIRAPRVLSPAAVVGRLRSVVCAGSDEVSEDERVCAAAQLARLATAGVHGADPSSWYG 769 Query 788 LAPVSTSDPLCDSDD-LVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALF 846 +S+ +PL D DD +VTL+PSTLQ L DCPLRWL ERHGG R++ S +GS++HAL Sbjct 770 ARELSSDEPLWDGDDHVVTLSPSTLQMLADCPLRWLLERHGGARGRDVRSTLGSLVHALV 829 Query 847 AEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSELTEVGVE 906 +E G +ES LL ELD+VWG LPF AQW+S NE RH M+ F++WR+ +R ELTEVG E Sbjct 830 SESGTAESVLLDELDKVWGKLPFDAQWHSDNERIRHLEMLATFLKWRSDTRGELTEVGTE 889 Query 907 VDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMY 966 +D+DG + G G +R+RGR DRLERD GRLV+VD+KTGK+PVSKDDAQ HAQLAMY Sbjct 890 IDVDGVVAGGEGDGPGVRVRGRLDRLERDSEGRLVVVDVKTGKSPVSKDDAQAHAQLAMY 949 Query 967 QLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAG 1026 QLAVA GL+ GDEPGG RLVY+GK+ ER QD +TP R+ W V + AAAT G Sbjct 950 QLAVAAGLIADGDEPGGGRLVYLGKTTGGRATERHQDAVTPEVRELWEARVHEAAAATQG 1009 Query 1027 PQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 P F+AR NDGC HCP+R CPA S P Sbjct 1010 PSFVARVNDGCAHCPVRATCPAQNSRSQP 1038 >gi|315445541|ref|YP_004078420.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] gi|315263844|gb|ADU00586.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] Length=1038 Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 655/1049 (63%), Positives = 774/1049 (74%), Gaps = 38/1049 (3%) Query 17 LRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALLRS 76 LRG V VLGGPGTGKS+LLV+ AVAHI AG DPESVLLLTGS R+ + R+++T+ALL Sbjct 18 LRGTVRVLGGPGTGKSSLLVDTAVAHIAAGCDPESVLLLTGSARLSAQVRASITSALL-- 75 Query 77 RTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAED 136 RAA+REP+VRTVHSYA+ VLR AAQR G PRL+TSAEQD IIRELLAGD ED Sbjct 76 --GAGGRAAVREPLVRTVHSYAFGVLRLAAQRNGSPPPRLITSAEQDGIIRELLAGDVED 133 Query 137 GPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQF 196 GPA+ WP LRPAL+T GFATELR+L+ARC+ERG+DP+ LQ++GR GRPEW AAG+F Sbjct 134 GPASPVRWPEQLRPALSTVGFATELRDLMARCSERGIDPVALQRIGRHAGRPEWQAAGRF 193 Query 197 AQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDD 256 AQ YEQ+MLLR AVG+AAPQAT PAL AAELVGAALEAFA+D +LL+AER+RV+ LLVDD Sbjct 194 AQAYEQIMLLRSAVGMAAPQATVPALGAAELVGAALEAFAMDADLLSAERSRVQLLLVDD 253 Query 257 AQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVT 316 AQ LDPQAARLV +LAAG EL +IAGDP+Q VFG+RG +P L D P ++ Sbjct 254 AQHLDPQAARLVEVLAAGAELTVIAGDPHQTVFGYRGADPALLRGDGP---------ALI 304 Query 317 LTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADAL 376 L SHRCA +A A+ I RRLPG R G G E G++ VR+A S HAE+A+IADAL Sbjct 305 LNRSHRCAAPLADAIAAITRRLPGADASREFTGRG-EQGTLAVRIAASPHAESALIADAL 363 Query 377 RRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTV 435 RRAHL+DGVPW +MAVIVRSVPR L RALAAAGVPV P PL+ +PAV+ALLTV Sbjct 364 RRAHLVDGVPWDRMAVIVRSVPRTGASLGRALAAAGVPVEDPHPDVPLANQPAVQALLTV 423 Query 436 LEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS--RKFGDLLVEVLGG 493 LEATA+ LDG++AL L+TGPIG VDPVSLRQ + R G T+ R FG+LLVE LG Sbjct 424 LEATAEKLDGERALALVTGPIGRVDPVSLRQ---LRRTLRRGVTAPDRGFGELLVEALGR 480 Query 494 D-APPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEH 552 D A +RALRR+RAVLTAA RS GG DPR TLW AW RSGLQ+RWLAA+E Sbjct 481 DVAALPDEHARALRRLRAVLTAA---RRSAEQGG-DPRQTLWQAWNRSGLQKRWLAAAER 536 Query 553 GGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQV 612 GG AA QA RDL+ VTALFD+ + YV RT+GASLRGL++H+T L LP R + A + + Sbjct 537 GGPAAAQAERDLDAVTALFDVAEQYVERTAGASLRGLIDHITGLSLPPARDD-ARSGDAI 595 Query 613 MVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDA---SMRAP 669 ++SAHAAL EWD VV+AGLQ+GLWPN PRGGVL TQ L+D +DGV S RAP Sbjct 596 SLISAHAALSGEWDFVVLAGLQEGLWPNVSPRGGVLATQHLVDVIDGVAAPGHRLSSRAP 655 Query 670 LLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVA-- 727 LLAEERRLL+ AMGRAR R+LVTAVDSD+G EA LPS F E+A A EPV Sbjct 656 LLAEERRLLIAAMGRARSRVLVTAVDSDSG---DEAALPSPFCHELAAMAT---EPVPEP 709 Query 728 MQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHG 787 P+ APRVLS AAVVGRLR VVCA + V + +R CAA QLARLA AGV GADPS W+G Sbjct 710 ALPIRAPRVLSPAAVVGRLRSVVCAGSDEVSEDERVCAAAQLARLATAGVHGADPSSWYG 769 Query 788 LAPVSTSDPLCDSDD-LVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALF 846 +S+ +PL D DD +VTL+PSTLQ L DCPLRWL ERHGG R++ S +GS++HAL Sbjct 770 ARELSSDEPLWDGDDHVVTLSPSTLQMLADCPLRWLLERHGGARGRDVRSTLGSLVHALV 829 Query 847 AEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSELTEVGVE 906 +E G +ES LL ELD+VWG LPF AQW+S NE RH M+ F++WR+ +R ELTEVG E Sbjct 830 SESGTAESVLLDELDKVWGKLPFDAQWHSDNERIRHLEMLATFLKWRSDTRGELTEVGTE 889 Query 907 VDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMY 966 +D+DG + G G +R+RGR DRLERD GRLV+VD+KTGK+PVSKDDAQ HAQLAMY Sbjct 890 IDVDGVVAGGDGDGPGVRVRGRLDRLERDSEGRLVVVDVKTGKSPVSKDDAQAHAQLAMY 949 Query 967 QLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAG 1026 QLAVA GL+ GDEPGG RLVY+GK+ ER QD +TP R+ W V + AAAT G Sbjct 950 QLAVAAGLIADGDEPGGGRLVYLGKTTGGRATERHQDAVTPEVRELWEARVHEAAAATQG 1009 Query 1027 PQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 P F+AR NDGC HCP+R CPA S P Sbjct 1010 PSFVARVNDGCAHCPVRATCPAQNSRSQP 1038 >gi|118470846|ref|YP_886307.1| helicase, UvrD/Rep family protein [Mycobacterium smegmatis str. MC2 155] gi|118172133|gb|ABK73029.1| helicase, UvrD/Rep family protein [Mycobacterium smegmatis str. MC2 155] Length=1045 Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 660/1057 (63%), Positives = 781/1057 (74%), Gaps = 34/1057 (3%) Query 9 AGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSA 68 A L PG G V +LGGPGTGKS+LLV+ AV HI AG DPESVLLLTGS R+ AR+A Sbjct 13 ASTLLEPGSNGVVRLLGGPGTGKSSLLVDTAVQHILAGADPESVLLLTGSARLRTAARAA 72 Query 69 LTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRE 128 +T LL + T G +REP+VRTVHSYA+AVLR AAQR GD PRL+TSAEQD IIRE Sbjct 73 ITARLLGAGTVG----VVREPLVRTVHSYAFAVLRLAAQRNGDPPPRLITSAEQDGIIRE 128 Query 129 LLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRP 188 LLAGD EDG + WP L PALTTAGFATELR+L+ARC ERG+DP+ LQ+LGR RP Sbjct 129 LLAGDLEDGHRSPVGWPEQLWPALTTAGFATELRDLMARCTERGVDPIALQRLGRTAKRP 188 Query 189 EWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERAR 248 EW+AAG+FAQ YEQ+MLLR AVG+AAPQAT PAL AAELVGAALEA D ELL ER R Sbjct 189 EWLAAGRFAQAYEQIMLLRSAVGMAAPQATVPALGAAELVGAALEALGADDELLDTERNR 248 Query 249 VRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAG 308 ++ LLVDDAQ LDPQAARLVR LAAGT L +IAGDP+Q+VFG+RG +P LL DD PA Sbjct 249 IKLLLVDDAQHLDPQAARLVRALAAGTGLTVIAGDPDQSVFGYRGADPV-LLRDDTHPA- 306 Query 309 GAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAE 368 +TLT S+RCAP +A A+TG+ +RLPG S R G G+VTVRLA S HAE Sbjct 307 ------ITLTQSYRCAPEIASAITGLGQRLPGVSDTRHWTGNPQREGTVTVRLAASTHAE 360 Query 369 AAMIADALRRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPAVGGPLSAEP 427 MIADALRRAHL+DG+PWSQMAVIVRSVPR L RAL AAGVPV P+ +P Sbjct 361 GTMIADALRRAHLVDGIPWSQMAVIVRSVPRVGTALARALTAAGVPVQDNGTDVPVGRQP 420 Query 428 AVRALLTVLEATADG-LDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDL 486 A ALLTVL+ TA G LD D A+ LLTGPIG VDPV+LRQLRR L+RA Q R FGDL Sbjct 421 AAAALLTVLDVTATGHLDADSAVALLTGPIGRVDPVTLRQLRRALRRADGSQPPRDFGDL 480 Query 487 LVEVLGGDAPPSG---PGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQ 543 LV+ + + P G +R LRR+RAVLTAA R SG+ DPR+TLW AW SGLQ Sbjct 481 LVDAI--EREPKGLSAEHARTLRRLRAVLTAARRSDASGA----DPRYTLWQAWHASGLQ 534 Query 544 RRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRP 603 RRWLAASE GG+ QA RDL+ VT LFD+ D YV+RT+GASLRGLV+HVT L V R Sbjct 535 RRWLAASERGGSVGAQADRDLDAVTTLFDVADQYVNRTAGASLRGLVDHVTRLGAAVART 594 Query 604 EPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVT-- 661 EP E V VLS H AL EWD VVIAG+Q+GLWPN +PRGGVLGTQ L+D LDGV Sbjct 595 EPETAAEAVAVLSVHGALAGEWDFVVIAGVQEGLWPNMIPRGGVLGTQHLVDVLDGVADM 654 Query 662 --KDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWA 719 + S RAPL+AEERRLL+ AMGRAR R+++TAVDSD G E++LPS F EI+ WA Sbjct 655 TDRTVSTRAPLVAEERRLLMAAMGRARTRVMITAVDSDTG---DESLLPSPFCAEISAWA 711 Query 720 DGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPG 779 EPVA P+ APRVL+ +A+VGRLR VVCAP AVDD R CAA QLARLA AGVPG Sbjct 712 T---EPVAEPPLVAPRVLAPSALVGRLRAVVCAPDGAVDDDARACAAAQLARLAAAGVPG 768 Query 780 ADPSEWHGLAPVSTSDPL-CDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAV 838 ADPS+WH + ++T +PL + +VTL+PSTLQ L DCPLRWL ERHGG + R++ S V Sbjct 769 ADPSQWHAMTSLTTEEPLWSEPGHVVTLSPSTLQMLTDCPLRWLLERHGGDDGRDVRSTV 828 Query 839 GSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRS 898 GS++HAL +EPG++ESQL+ EL++VW LP+ A+WYS NELARHRAM++ F +WR +R Sbjct 829 GSLVHALVSEPGKTESQLVNELEKVWDDLPYDAKWYSDNELARHRAMLETFTRWREDTRR 888 Query 899 ELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQ 958 +LTEV E+ ++G + + +R+RGR DRLERD AGRLV+VD+KTGK+PV+KDDAQ Sbjct 889 QLTEVATEIPVEGIVVEPGENTPGVRVRGRLDRLERDEAGRLVVVDLKTGKSPVTKDDAQ 948 Query 959 QHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLVR 1018 HAQLAMYQLAVA GL+ GDEPGG +LVY+GK+GAAG ER+QDPLTP R EW V Sbjct 949 NHAQLAMYQLAVAAGLLDDGDEPGGGKLVYLGKAGAAGATEREQDPLTPDKRAEWLETVG 1008 Query 1019 QLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 + AAATAGP+F+AR N+GC +CP+R CPA G P Sbjct 1009 EAAAATAGPRFVARVNNGCANCPVRSSCPAQANGDRP 1045 >gi|289747015|ref|ZP_06506393.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] gi|289687543|gb|EFD55031.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] Length=489 Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/489 (99%), Positives = 489/489 (100%), Gaps = 0/489 (0%) Query 567 VTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWD 626 +TALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWD Sbjct 1 MTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWD 60 Query 627 LVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRAR 686 LVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRAR Sbjct 61 LVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRAR 120 Query 687 RRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRL 746 RRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRL Sbjct 121 RRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRL 180 Query 747 RVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTL 806 RVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTL Sbjct 181 RVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTL 240 Query 807 TPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGH 866 TPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGH Sbjct 241 TPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGH 300 Query 867 LPFGAQWYSANELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLR 926 LPFGAQWYSANELARHRAMIQAFVQWRAQSRSELT+VGVEVDIDGALEDGSGQARKIRLR Sbjct 301 LPFGAQWYSANELARHRAMIQAFVQWRAQSRSELTKVGVEVDIDGALEDGSGQARKIRLR 360 Query 927 GRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARL 986 GRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARL Sbjct 361 GRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARL 420 Query 987 VYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGC 1046 VYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGC Sbjct 421 VYVGKSGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGC 480 Query 1047 PAHVRGSAP 1055 PAHVRGSAP Sbjct 481 PAHVRGSAP 489 >gi|289763385|ref|ZP_06522763.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] gi|289710891|gb|EFD74907.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] Length=540 Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/518 (96%), Positives = 501/518 (97%), Gaps = 5/518 (0%) Query 541 GLQRRWLAASE---HGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQ 597 GLQRRWLAA GG + + + + LFDITDHYVSRTSGASLRGLVEHVTALQ Sbjct 25 GLQRRWLAAKRAWWCGGCS--KPPGNWKRGPPLFDITDHYVSRTSGASLRGLVEHVTALQ 82 Query 598 LPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDEL 657 LPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDEL Sbjct 83 LPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDEL 142 Query 658 DGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQ 717 DGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQ Sbjct 143 DGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQ 202 Query 718 WADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGV 777 WADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGV Sbjct 203 WADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGV 262 Query 778 PGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSA 837 PGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSA Sbjct 263 PGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSA 322 Query 838 VGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSR 897 VGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSR Sbjct 323 VGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSR 382 Query 898 SELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDA 957 SELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDA Sbjct 383 SELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDA 442 Query 958 QQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLV 1017 QQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLV Sbjct 443 QQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRNLV 502 Query 1018 RQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 1055 RQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP Sbjct 503 RQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSAP 540 >gi|296169028|ref|ZP_06850690.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896287|gb|EFG75946.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=638 Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/642 (78%), Positives = 546/642 (86%), Gaps = 5/642 (0%) Query 413 PVAPPAVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQ 472 PVA PA GGPLS EPA RALLTVL ATADGLDG++AL LLTGPIGGVDPVSLRQLRRTLQ Sbjct 1 PVAAPAAGGPLSEEPAARALLTVLAATADGLDGERALALLTGPIGGVDPVSLRQLRRTLQ 60 Query 473 RARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHT 532 RA P + F DLL + L G APP GP R ++RVRAVL AAARCHR+G QDPR+T Sbjct 61 RAHPDRAPGDFADLLADTLAGAAPPVGPQFRPVQRVRAVLDAAARCHRAG----QDPRYT 116 Query 533 LWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEH 592 LWAAW RSGLQRRWL+A+E GG A QATRDL+ VTALFDITD YVSRTSGASLRGLV+H Sbjct 117 LWAAWHRSGLQRRWLSAAERGGPAGAQATRDLDAVTALFDITDQYVSRTSGASLRGLVDH 176 Query 593 VTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQR 652 V AL LP VR EP + EQV VLSAHAALGHEWDLVVIAGLQ+GLWPNTVPRGGVLGTQR Sbjct 177 VAALHLPGVRQEPVSTVEQVRVLSAHAALGHEWDLVVIAGLQEGLWPNTVPRGGVLGTQR 236 Query 653 LLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFF 712 LLD LDGVT DAS+RAPLLAEERRLLV AMGRARRRLLVTAVD D GG EA LPS F+ Sbjct 237 LLDVLDGVTGDASVRAPLLAEERRLLVAAMGRARRRLLVTAVDGDPGGADGEAALPSTFY 296 Query 713 FEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARL 772 +E+AQWA D + A QPVSAPRVLSAAA+VGRLR VVCAP VDDADR CAATQLARL Sbjct 297 YEVAQWAGDDADAAASQPVSAPRVLSAAALVGRLRGVVCAPDGTVDDADRACAATQLARL 356 Query 773 AKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTR 832 A+AGV GADP+ WHGL PVST++PLC DD VTLTPSTLQ LNDCPLRWLAERHGGTN R Sbjct 357 ARAGVAGADPASWHGLVPVSTAEPLCGGDDAVTLTPSTLQMLNDCPLRWLAERHGGTNPR 416 Query 833 ELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQW 892 L S +GS+LHAL AEPGR+ES+LLAELDR W HLPF A+W+SANELARHRAMI+AF++W Sbjct 417 ALRSTIGSLLHALLAEPGRTESELLAELDRAWRHLPFEAEWHSANELARHRAMIEAFLEW 476 Query 893 RAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPV 952 RAQ+R LTEVGVEV+IDGAL SG ++RLRGR DRLERD AGRLVIVDIKTGKTPV Sbjct 477 RAQTRGALTEVGVEVEIDGALA-ASGDRGEVRLRGRVDRLERDAAGRLVIVDIKTGKTPV 535 Query 953 SKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDE 1012 SKDDAQQHAQLAMYQLAVAEGLV AG EPGGARLVY+GK+GA+GV ER+QDPLTPAARDE Sbjct 536 SKDDAQQHAQLAMYQLAVAEGLVDAGTEPGGARLVYLGKTGASGVTEREQDPLTPAARDE 595 Query 1013 WRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSA 1054 WR LVR+ A ATAGP+F+ARRNDGC+HCPLRP CPAH G+A Sbjct 596 WRRLVRRAAEATAGPRFVARRNDGCSHCPLRPSCPAHADGAA 637 >gi|289747016|ref|ZP_06506394.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] gi|289687544|gb|EFD55032.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] Length=522 Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/505 (100%), Positives = 505/505 (100%), Gaps = 0/505 (0%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR Sbjct 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA Sbjct 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ Sbjct 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE Sbjct 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL Sbjct 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 Query 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR Sbjct 301 ADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVR 360 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG Sbjct 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVG 420 Query 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS Sbjct 421 GPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 Query 481 RKFGDLLVEVLGGDAPPSGPGSRAL 505 RKFGDLLVEVLGGDAPPSGPGSRAL Sbjct 481 RKFGDLLVEVLGGDAPPSGPGSRAL 505 >gi|254776586|ref|ZP_05218102.1| helicase, UvrD/Rep family protein [Mycobacterium avium subsp. avium ATCC 25291] Length=655 Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/646 (75%), Positives = 529/646 (82%), Gaps = 9/646 (1%) Query 411 GVPVAPPAVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT 470 GVPV PA GPL+ +PAVRALLTVL ATADGLDG +AL LLTGPIG VDPVSLRQLRR Sbjct 14 GVPVTAPAASGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLRRN 73 Query 471 LQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPR 530 LQRA G+ F +LLVE L G APP G RALRRVRAVL AA CHR G QDPR Sbjct 74 LQRANAGRPPGDFAELLVEALTGTAPPPGAPFRALRRVRAVLDAAGCCHRDG----QDPR 129 Query 531 HTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLV 590 + LWAAW +SGLQRRWL+ SE GG AA QA RDL++VTALFDITD YVSRTSGASLRGLV Sbjct 130 YILWAAWHQSGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYVSRTSGASLRGLV 189 Query 591 EHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGT 650 EHV ALQLP PE A EQV VLSAHAALG EWD VVIAGLQDGLWPNTVPRGGVLGT Sbjct 190 EHVAALQLPGAGPESVATAEQVSVLSAHAALGREWDFVVIAGLQDGLWPNTVPRGGVLGT 249 Query 651 QRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSA 710 QRLLD LDGV+ DAS+RAPLLAEERRLLV AMGRARRRLLVTAVDSD G EA LPS Sbjct 250 QRLLDVLDGVSADASVRAPLLAEERRLLVAAMGRARRRLLVTAVDSDTDGSDREAALPSP 309 Query 711 FFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLA 770 F +EIAQWA D EP A+QPVSAPRVLSAAA+VGRLR VVCAP AVD+ +R CAATQLA Sbjct 310 FCYEIAQWAGEDAEPAALQPVSAPRVLSAAALVGRLRGVVCAPDGAVDELERRCAATQLA 369 Query 771 RLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTN 830 RLA+AGVPGADP+ WHGL PVST++PL D+VTLTPST+Q L DCPLRWLAERHGGT+ Sbjct 370 RLAQAGVPGADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQTLTDCPLRWLAERHGGTD 429 Query 831 TRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFV 890 R+L SA+GSV+HAL A+P RS ++L+AELDR W HLPF AQW+S NELARHRAM++AF Sbjct 430 PRDLRSAIGSVVHALIAQPHRSPAELVAELDRAWRHLPFAAQWHSDNELARHRAMLEAFA 489 Query 891 QWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKT 950 QWRA +R LTEVGVEV+IDG L G G R++RLRGR DR+ERD AGRLVIVD+KTGKT Sbjct 490 QWRANTRGALTEVGVEVEIDGTLSTGDG--REVRLRGRVDRVERDAAGRLVIVDVKTGKT 547 Query 951 PVSKDDAQQHAQLAMYQLAVAEGLVRA--GD-EPGGARLVYVGKSGAAGVAERKQDPLTP 1007 PVSKDDAQQHAQLA+YQLAVA GL+ A GD EPGGARLVYVGK+ A+GV ER+QDPLT Sbjct 548 PVSKDDAQQHAQLALYQLAVAHGLLGAAGGDAEPGGARLVYVGKTAASGVVEREQDPLTA 607 Query 1008 AARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGS 1053 AA D+WR +R+ A ATAGPQFIARRNDGCTHCP RP CPAH GS Sbjct 608 AAADQWREALRRAADATAGPQFIARRNDGCTHCPXRPCCPAHADGS 653 >gi|169630597|ref|YP_001704246.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977] gi|169242564|emb|CAM63592.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus] Length=1058 Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/1072 (51%), Positives = 687/1072 (65%), Gaps = 44/1072 (4%) Query 2 SHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRM 61 S W A L P G +V+GG GTGK++LLV+ AH AG +P SVL+LTGS R Sbjct 8 SRYWDGAAACLLDPDRTGRFVVVGGSGTGKTSLLVDIVAAHTAAGVNPASVLVLTGSNRA 67 Query 62 GMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAE 121 R+ ++ A+ R G AIREP+VRTVHSYA+AVL A G+ PRL+T+AE Sbjct 68 SAELRNRISAAVF-ERCAG---VAIREPMVRTVHSYAFAVLAAHAACQGNPPPRLITAAE 123 Query 122 QDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQL 181 QD+I+RELL G+AED + +WPA LRPAL TAGFAT +R+L+ARC ERG+D EL+ + Sbjct 124 QDSIVRELLCGNAEDN---SGSWPASLRPALATAGFATGVRDLMARCTERGVDARELRAI 180 Query 182 GRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPEL 241 GRR RPEWIA A+ YE+VMLLR AVG+AAPQAT PAL AAELVG+ALE FAV+P + Sbjct 181 GRRHNRPEWIAVAGLAREYEEVMLLRSAVGMAAPQATVPALGAAELVGSALETFAVEPGM 240 Query 242 LAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLA 301 LAAER R+ LLVDDAQ LDPQAA LVR+LA +IAGDPNQ VFGFRG + T LL Sbjct 241 LAAERDRIELLLVDDAQHLDPQAALLVRLLAERAGFCVIAGDPNQTVFGFRGAD-TQLLQ 299 Query 302 DDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRL 361 + + + L SHRCA +A +ARRLPG S R I G E G VRL Sbjct 300 ----VSADSRTTMIELDGSHRCAAPIAELANSVARRLPGSSPARVIH--GVENGPAAVRL 353 Query 362 AG--SAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPA 418 A + AEA+++ D LRR+HLIDGVPWS+MAVIVRSVPR+ L RAL +AGVPV + Sbjct 354 AAVPTETAEASLVVDLLRRSHLIDGVPWSRMAVIVRSVPRSGAALCRALQSAGVPVHAES 413 Query 419 VGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQ 478 GP+++ PAV ALL + A G+ + A+ L TGP+G VDPV+LR+LRR L RA Sbjct 414 YDGPVASVPAVHALLLAVSAAQGGVTHEDAVTLATGPLGRVDPVALRRLRRQLLRAEEAA 473 Query 479 -TSRKFGDLLVEVL-----GGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHT 532 R +LL VL A + + LRRVRAV+ AA R + G Sbjct 474 GGERGSAELLRAVLVEADETHLAALTDIQAAPLRRVRAVIGAA----REATASGASVLDV 529 Query 533 LWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEH 592 LWAAW RSGLQRRW S+ GG QA RDL+ V++LFD+ +V+RT G + GL++H Sbjct 530 LWAAWTRSGLQRRWDGLSQRGGPLGAQADRDLDAVSSLFDLASEHVARTPGIGVTGLIDH 589 Query 593 VTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQR 652 + +L L R P + V ++SAHAA+G EWD+V I G+Q+GLWPNT RGGVL TQ Sbjct 590 IRSLALVGQRTTRLEP-DAVAIVSAHAAVGREWDVVAIPGVQEGLWPNTAVRGGVLRTQE 648 Query 653 LLDELDGVTKDASM--RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSA 710 L+D L G+ A + A LAEERRLL+ A+GRA RR+L+TAV+++ G + S Sbjct 649 LMDVLAGIEHAAHVDGSAVALAEERRLLLLAVGRAARRVLITAVENENADMGGGPAMASR 708 Query 711 FFFEIA----QWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAA 766 F E+ +W + P A Q RVL+AA +VG LR VV AP AV DA R AA Sbjct 709 FLTELMAAHPEWVISEYRPGAAQ----SRVLTAANLVGELRAVVTAPVEAVTDARRRAAA 764 Query 767 TQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQALNDCPLRWLAER 825 QLARLA AGVPGADP W+GL VS PL ++D V ++PS ++ L CPLRW+ ER Sbjct 765 RQLARLAAAGVPGADPESWYGLGDVSDERPLWLAEDGPVRVSPSNVETLMACPLRWMLER 824 Query 826 HGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAM 885 HGGT+ + A+G+++H L + LD+ W +PF +QWY+ NEL RH + Sbjct 825 HGGTDLTDPRRALGTLVHELVGVHAEDSDAMCRALDKAWESMPFESQWYARNELRRHHEL 884 Query 886 IQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDI 945 ++AF WRA +R ELTEVG E+ +DG L +GQ ++RL GR DRLERD GR V++DI Sbjct 885 LEAFTTWRASTRGELTEVGREIGVDGVLSR-AGQP-QVRLVGRIDRLERDAEGRPVVIDI 942 Query 946 KTGKTPVSKDDAQQHAQLAMYQLAVAEGLV--RAGDEPGGARLVYVGKSGA-AGVAERKQ 1002 KTGK+P +KDDAQQHAQLA YQ+A AEGL+ PGG RLVY+ K G +R Q Sbjct 943 KTGKSPATKDDAQQHAQLAAYQVAAAEGLIEGEPAGAPGGGRLVYIAKPNLDDGATQRHQ 1002 Query 1003 DPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGSA 1054 DPLTPAA+D WR + AA+T GP F+AR NDGC HCPLR CPA G A Sbjct 1003 DPLTPAAQDAWRESIHNAAASTQGPIFVARVNDGCGHCPLRTCCPAQTDGQA 1054 >gi|226365846|ref|YP_002783629.1| ATP-dependent DNA helicase [Rhodococcus opacus B4] gi|226244336|dbj|BAH54684.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4] Length=1108 Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/1067 (51%), Positives = 667/1067 (63%), Gaps = 55/1067 (5%) Query 19 GPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALL-RSR 77 P VLGGPGTGK++LLV+ AV I G DPESVL+LT S R R R +T AL+ Sbjct 58 NPWQVLGGPGTGKTSLLVDVAVDRIAGGEDPESVLVLTQSKRAAGRVREEVTAALIGHDE 117 Query 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDG 137 +GP A REP+VRTVHSYA+AVLR A G+ PRL+T AEQDA++RE+L GD DG Sbjct 118 HHGP--RATREPLVRTVHSYAFAVLRLQAAAHGNPPPRLITGAEQDAVLREMLQGDIADG 175 Query 138 PAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFA 197 WP LRPAL GFA ELR+L+ R +ERGL P +L +LGRR R EW+AAG FA Sbjct 176 ---GEMWPERLRPALPLGGFAVELRDLMLRSSERGLGPEDLIELGRRHDRTEWVAAGMFA 232 Query 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDA 257 RYE MLLRGAVG+ AP+ATAPAL AAEL+GAAL AFA DP+LL AER RVR LLVDDA Sbjct 233 ARYEHGMLLRGAVGVEAPEATAPALDAAELIGAALTAFATDPDLLRAERDRVRHLLVDDA 292 Query 258 QQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGL--LADDPPPAGGAPIPSV 315 Q LDPQAA LVR++ GT ++AGDP+Q+++GFRG +PT L LAD P V Sbjct 293 QHLDPQAAELVRLVGTGTRTTVVAGDPDQSIYGFRGADPTFLAHLADKGDPR------QV 346 Query 316 TLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADA 375 L V+ R + VA I RLPG + RI + G + R+ G+A EAA+IAD Sbjct 347 LLPVNFRSSADVATTAARITSRLPGH-LPHRIWTPAQDGGRTSARVLGTAAKEAALIADT 405 Query 376 LRRAHLIDGVPWSQMAVIVRSVPRAVR-LPRALAAAGVPVAPPAVGGPLSAEPAVRALLT 434 LRRAHL+DGVPWS+MAVIVRSVPRA+ L RAL AGVPV A PL+ + V L+ Sbjct 406 LRRAHLLDGVPWSEMAVIVRSVPRALAPLRRALLGAGVPVTTAASELPLARQHGVSGLML 465 Query 435 VLEA-TADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQ-TSRKFGDLLVEVLG 492 VL A + G+ AL LL GP+GG +PV+LR+LRR L+RA R +LL +L Sbjct 466 VLRALSGQEFTGEDALALLAGPVGGAEPVALRRLRRGLRRAELASGGDRDSAELLRLLLV 525 Query 493 GDAPPSGPGSRALRRVRAVLT--AAARCHRSGSL---------GGQDPRHTLWAAWQRSG 541 G+ + + RRV A LT AA +R S+ G+ LWAAWQ +G Sbjct 526 GE-------TGSTRRVTAKLTDVEAASLNRVLSVLRKARVPLERGRGIEDVLWAAWQATG 578 Query 542 LQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVV 601 L+RRW AAS GG QA RDL+ V ALFD YV R A L G V+++T +P Sbjct 579 LERRWSAASARGGPIGAQADRDLDAVVALFDAAASYVDRLPRAQLAGFVDYLTGQAIPTA 638 Query 602 RPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVT 661 R P + V VLSAHAA G EWD+V +AG+Q+GLWP+ RG +LGT+ L+D GV+ Sbjct 639 RTVSVVPRDAVSVLSAHAAAGREWDVVAVAGVQEGLWPSLRARGSLLGTEALIDLTSGVS 698 Query 662 KDA-------SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFE 714 + S APLLAEERRL + A RARR LLVTAVDS +G ++ S F E Sbjct 699 DGSETAADRMSRTAPLLAEERRLFLVACSRARRSLLVTAVDSASGDAD---LVHSRFVDE 755 Query 715 -IAQWADGDGEPVAMQPVS-APRVLSAAAVVGRLRVVVCAPACAVDD-ADRDCAATQLAR 771 +A D D E A+ V A RVL+ A+V LR VVC P A D A ++ AA QLAR Sbjct 756 LLAGEQDSDAEEAALPAVDPATRVLALPALVAELRSVVCDPDVADSDPARQERAARQLAR 815 Query 772 LAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQALNDCPLRWLAERHGGTN 830 LA+AGV GA P +W+G A ST L +++D V+L+PST+ LN CPLRWL ERHGG + Sbjct 816 LAEAGVRGAHPDQWYGTAEPSTGVALWNAEDGPVSLSPSTVDLLNTCPLRWLLERHGGRD 875 Query 831 TRELPSAVGSVLHALF-AEPGR-SESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQA 888 + G+++H L A GR Q+ L+ W + G+QWYS EL R R M+ Sbjct 876 GDNTHAIAGTLVHTLVQALAGRIPADQVERALENAWESIDLGSQWYSRRELDRTRDMLAT 935 Query 889 FVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTG 948 F W +RSELTEVGVEV +DG LE + IRLRGR DRLERD GR VIVD+KT Sbjct 936 FTAWLGNTRSELTEVGVEVAVDGVLEPREEGSPTIRLRGRIDRLERDAEGRPVIVDVKTA 995 Query 949 KTPVSKDDAQQHAQLAMYQLAVAEGLV--RAGDEPGGARLVYVGK-SGAAGVAERKQDPL 1005 ++PV+KD+AQQHAQLA YQ+A A G + +PGGARLV+V K G +R Q PL Sbjct 996 RSPVTKDNAQQHAQLAAYQVAAAIGAIDGEPASKPGGARLVFVAKPHQKEGATQRVQAPL 1055 Query 1006 TPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 + A + W ++ AAAT GP+F+AR NDGC HCP+R CPAH G Sbjct 1056 SEEALESWLAVIHAAAAATKGPEFLARVNDGCRHCPVRTSCPAHDEG 1102 >gi|111023338|ref|YP_706310.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110822868|gb|ABG98152.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length=1098 Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust. Identities = 535/1068 (51%), Positives = 661/1068 (62%), Gaps = 57/1068 (5%) Query 19 GPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALL-RSR 77 P VLGGPGTGK++LLV+ AV I G DPESVL+LT S R R R +T AL+ Sbjct 48 NPWQVLGGPGTGKTSLLVDVAVDRIAGGEDPESVLVLTQSKRAAGRVREEVTAALIGHDE 107 Query 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDG 137 +GP A REP+VRTVHSYA+AVLR A G+ PRL+T AEQDA++RE+L GD DG Sbjct 108 HHGP--RATREPLVRTVHSYAFAVLRLQAAAHGNPPPRLITGAEQDAVLREMLHGDIADG 165 Query 138 PAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFA 197 WP LRPAL GFA ELR+L+ R +ERGL P +L +LG+R RPEW+AAG FA Sbjct 166 ---GEMWPERLRPALALGGFAVELRDLMLRSSERGLGPEDLIRLGQRHSRPEWVAAGMFA 222 Query 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDA 257 RYE MLLRGAVG+ AP+ATAPAL AAEL+GAAL AFA DP+LL ERARVR LLVDDA Sbjct 223 ARYEHGMLLRGAVGVEAPEATAPALDAAELIGAALTAFATDPDLLRTERARVRHLLVDDA 282 Query 258 QQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGL--LADDPPPAGGAPIPSV 315 Q LDPQAA LVR+L GT ++AGDP+Q+++GFRG +PT L LAD P V Sbjct 283 QHLDPQAAELVRLLGTGTRTTVVAGDPDQSIYGFRGADPTFLADLADKGDPR------QV 336 Query 316 TLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADA 375 L V+ R + VA I RLPG + R + G +VR+ + EAA++AD Sbjct 337 LLPVNFRSSAEVATTAARITSRLPGH-LPHRSWSPAQDGGRTSVRVLSTVAKEAALVADT 395 Query 376 LRRAHLIDGVPWSQMAVIVRSVPRAVR-LPRALAAAGVPVAPPAVGGPLSAEPAVRALLT 434 LRRAHL+DGVPWS+MAVIVRSVPRA+ L RAL AGVPV A PL+ + V L+ Sbjct 396 LRRAHLLDGVPWSEMAVIVRSVPRALAPLRRALLGAGVPVTTAASELPLARQHGVSGLML 455 Query 435 VLEA-TADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQ-TSRKFGDLLVEVLG 492 VL A + G+ AL LL GP+GG +PV+LR+LRR L+RA R +LL VL Sbjct 456 VLRALSGQEFTGEDALALLAGPVGGAEPVALRRLRRGLRRAELASGGDRDSAELLRLVLV 515 Query 493 GDAPPSGPGSRALRRVRAVLT--AAARCHRSGSL---------GGQDPRHTLWAAWQRSG 541 G+ + + RRV A LT AA +R S+ G+ LWAAWQ +G Sbjct 516 GE-------TDSTRRVTAKLTDVEAASLNRVLSVLRKAKVPLDRGRGIEDVLWAAWQATG 568 Query 542 LQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVV 601 L+RRW A S GG QA RDL+ V ALFD YV R A L G V+++T +P Sbjct 569 LERRWSAVSARGGPIGAQADRDLDAVVALFDAAASYVDRLPRAQLAGFVDYLTGQAIPTT 628 Query 602 RPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVT 661 R A P + V VLSAH+A G EWD+V +AG+Q+GLWP+ RG +LGT+ L+D GV+ Sbjct 629 RNVSAVPVDAVSVLSAHSAAGREWDVVAVAGVQEGLWPSLRARGSLLGTEALIDLTAGVS 688 Query 662 KDA-------SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFE 714 + S APLLAEERRL + A RARR LLVTAVDS +G +A L + F + Sbjct 689 DGSETAADWMSRTAPLLAEERRLFLVACSRARRSLLVTAVDSASG----DADLVHSRFVD 744 Query 715 IAQWADGDG---EPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDD-ADRDCAATQLA 770 D D E V A RVL+ A+V LR VVC P A D A ++ AA QLA Sbjct 745 ELLSGDQDSDVVEAVVQAEDPATRVLALPALVAELRSVVCDPDVAESDPARQERAARQLA 804 Query 771 RLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQALNDCPLRWLAERHGGT 829 RLA AGV GA P +W+G A ST L + +D V+L+PST+ LN CPLRWL ERHGGT Sbjct 805 RLADAGVRGAHPDQWYGTAEPSTGVALWNEEDGPVSLSPSTIDLLNTCPLRWLLERHGGT 864 Query 830 NTRELPSAVGSVLHALF-AEPGR-SESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQ 887 + + G+++H L A GR Q+ L+ W + G+QWYS EL R R M+ Sbjct 865 DGDNTHAIAGTLVHTLVQALAGRIPPDQVARALENAWDSIDLGSQWYSRRELDRTRDMLA 924 Query 888 AFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKT 947 F W +RSELTEVGVEV +DG LE + IRLRGR DRLERD GR VIVD+KT Sbjct 925 TFTAWLGNTRSELTEVGVEVAVDGVLEPREEGSPTIRLRGRIDRLERDAEGRPVIVDVKT 984 Query 948 GKTPVSKDDAQQHAQLAMYQLAVAEGLV--RAGDEPGGARLVYVGKSG-AAGVAERKQDP 1004 ++PV+KDDAQQHAQLA YQ+A A G + +PGGARLV+V K G +R Q P Sbjct 985 ARSPVTKDDAQQHAQLAAYQVAAAVGAIDGEPASKPGGARLVFVAKPHRKEGATQRVQAP 1044 Query 1005 LTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 L+ + W ++ AAAT GP+F+AR NDGC HCP+R CPAH G Sbjct 1045 LSDEDLETWLAVIHAAAAATKGPEFLARVNDGCRHCPVRTSCPAHDEG 1092 >gi|226305705|ref|YP_002765665.1| ATP-dependent DNA helicase [Rhodococcus erythropolis PR4] gi|226184822|dbj|BAH32926.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4] Length=1103 Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/1082 (48%), Positives = 661/1082 (62%), Gaps = 76/1082 (7%) Query 19 GPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALL-RSR 77 P VLG PGTGK++LLV+ AV I G DPESVL+LT S R + R +T LL + Sbjct 45 NPWQVLGSPGTGKTSLLVDLAVQKISGGEDPESVLVLTQSRRAATQVREQITAGLLGYEQ 104 Query 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDG 137 GP A REP+VRTVHSYA+AVLR A G+A PRL+T AEQD+++RE+L GD EDG Sbjct 105 ERGP--QATREPLVRTVHSYAFAVLRLQAAAHGNAPPRLITGAEQDSVLREMLRGDIEDG 162 Query 138 PAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFA 197 WP LRPAL GFA ELR+L+ R ERGL P +L +LG++RGRPEW+AAG+FA Sbjct 163 ---ALRWPERLRPALGLNGFAVELRDLMLRANERGLGPEDLVKLGKKRGRPEWVAAGRFA 219 Query 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDA 257 + YEQ +LLRG+VG+ AP+ATAPAL AAEL+GAAL AFA DPELL +ERAR+R LLVDDA Sbjct 220 EAYEQGVLLRGSVGVEAPEATAPALDAAELIGAALTAFATDPELLRSERARIRHLLVDDA 279 Query 258 QQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVTL 317 Q LDPQAA+LVR++ GT +IAGDP+Q+VFGFRG + LL A + L Sbjct 280 QHLDPQAAQLVRLIGTGTAGTVIAGDPDQSVFGFRGADSAFLLG----LAERGDERQIVL 335 Query 318 TVSHRCAPAVARAVTGIARRLPGRSVGRRI----EGTGTEVGSVTVRLAGSAHAEAAMIA 373 V++R VA IA RLPG ++ RI + T G +VR+ G+ EAA++A Sbjct 336 PVTYRNNADVASIAAKIAARLPG-NLAHRIAVPSDLTDENPGRASVRVLGTTAKEAAVVA 394 Query 374 DALRRAHLIDGVPWSQMAVIVRSVPRAVR-LPRALAAAGVPVAPPAVGGPLSAEPAVRAL 432 D LRRAHL+DG+ WS MAVIVRSVPR + L RAL AAGVPV A PL+ + V L Sbjct 395 DTLRRAHLLDGIAWSDMAVIVRSVPRTLAPLRRALLAAGVPVTTAATELPLARQHGVSGL 454 Query 433 LTVLEAT-ADGLDGDQALLLLTGPIGGVDPV---------------------SLRQLRRT 470 L VL A D GD AL L+ GPIGG +PV S LR Sbjct 455 LLVLRALGGDQFTGDDALALMAGPIGGAEPVTLRRLRRGLRRVELASGSDRDSSELLRLI 514 Query 471 LQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPR 530 L Q+ R G L + + AL RV +VL AR LG ++ Sbjct 515 LIDEDRAQSKRLMGKL-----------TDVEAAALNRVLSVLR-KARVPLERGLGVEE-- 560 Query 531 HTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLV 590 LWAAWQ +GL+RRW AAS GG QA RDL+ V ALFD +YV R + L G V Sbjct 561 -VLWAAWQATGLERRWAAASARGGPIGSQADRDLDAVVALFDAAANYVDRLPRSQLSGFV 619 Query 591 EHVTALQLPV-VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLG 649 +++T+ ++P R + V V+SAHAA G EW +V +AG+Q+GLWP+ RG +L Sbjct 620 DYLTSQEIPTDSRSRSVIAPDAVTVVSAHAAAGREWAVVAVAGVQEGLWPSLRARGSLLR 679 Query 650 TQRLLDELDGVTKDA-------SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGG 702 T+ L+D ++GV+ + S APLLAEERRL + A RARRRLL+TAV+S G Sbjct 680 TEALIDLVNGVSDGSDSAAERLSRTAPLLAEERRLFLVACSRARRRLLITAVES---ASG 736 Query 703 HEAVLPSAFFFEIAQWADGDGEPVAMQPVSAP-----RVLSAAAVVGRLRVVVCAPACAV 757 ++PS F E+ + +P + V AP RVLS A+V +LR VVC P A Sbjct 737 DTDLVPSRFVDELIRGDAYSDDPSSDLDVVAPETGDTRVLSLPALVAQLRSVVCDPDIAH 796 Query 758 DDADRDC-AATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQALN 815 D ++ AA QLARLA AGV GA P +W+G A ST+ P+ +D V+L+PST++ L Sbjct 797 FDPEKHSRAARQLARLAAAGVRGAHPDQWYGTAEPSTAAPMWQPEDGPVSLSPSTIELLE 856 Query 816 DCPLRWLAERHGGTNTRELPSAVGSVLHALF-AEPGR-SESQLLAELDRVWGHLPFGAQW 873 CPLRW+ ERHGG++ + G+++H L A GR Q+ L+ W + G+QW Sbjct 857 TCPLRWVFERHGGSDGDNTHAIAGTLVHTLVQALAGRIPPDQVEKALENAWESIDLGSQW 916 Query 874 YSANELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLE 933 YS EL R R M+ F W +R ELTEVGVEV ++G LE A ++LRGR DRLE Sbjct 917 YSRRELNRTREMLATFTAWMNATRGELTEVGVEVAVEGVLEPREEGAPAVKLRGRIDRLE 976 Query 934 RDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRA--GDEPGGARLVYVGK 991 RD GR V+VD+KT + PVS + AQ HAQLA YQ+A AEG + +PGGARLV+V K Sbjct 977 RDTQGRPVVVDVKTARNPVSNEAAQSHAQLAAYQVAAAEGAIAGEPATQPGGARLVFVAK 1036 Query 992 SGAA-GVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHV 1050 S G A+R Q PLT A + WR+++ AAAT GPQ++AR NDGC HCP+R CPAH Sbjct 1037 SNKKDGAAQRVQPPLTAEAVEMWRDVIHNAAAATQGPQYLARVNDGCRHCPVRSSCPAHD 1096 Query 1051 RG 1052 G Sbjct 1097 EG 1098 >gi|229490969|ref|ZP_04384802.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121] gi|229322085|gb|EEN87873.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121] Length=1120 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/1081 (48%), Positives = 659/1081 (61%), Gaps = 76/1081 (7%) Query 20 PVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALL-RSRT 78 P VLG PGTGK++LLV+ AV I G DPESVL+LT S R + R +T LL + Sbjct 63 PWQVLGSPGTGKTSLLVDLAVQKISGGEDPESVLVLTQSRRAATQVREQITAGLLGYEQE 122 Query 79 NGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGP 138 GP A REP+VRTVHSYA+AVLR A G+A PRL+T AEQD+++RE+L GD EDG Sbjct 123 RGP--QATREPLVRTVHSYAFAVLRLQAAAHGNAPPRLITGAEQDSVLREMLRGDIEDG- 179 Query 139 AATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFAQ 198 WP LRPAL GFA ELR+L+ R ERGL P +L +LG++RGRPEW+AAG+FA+ Sbjct 180 --ALRWPERLRPALGLNGFAVELRDLMLRANERGLGPEDLVKLGKKRGRPEWVAAGRFAE 237 Query 199 RYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDAQ 258 YEQ +LLRG+VG+ AP+ATAPAL AAEL+GAAL AFA DPELL +ERAR+R LLVDDAQ Sbjct 238 AYEQGVLLRGSVGVEAPEATAPALDAAELIGAALTAFATDPELLRSERARIRYLLVDDAQ 297 Query 259 QLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVTLT 318 LDPQAA+LVR++ T +IAGDP+Q+VFGFRG + LL A + L Sbjct 298 HLDPQAAQLVRLIGTATAGTVIAGDPDQSVFGFRGADSAFLLG----LAERGDERQIVLP 353 Query 319 VSHRCAPAVARAVTGIARRLPGRSVGRRI----EGTGTEVGSVTVRLAGSAHAEAAMIAD 374 + R VA IA RLPG ++ RI + T + G +VR+ G+ EAA++AD Sbjct 354 TTFRNNADVASIAAKIAARLPG-NLAHRIAVPSDLTDEDPGRASVRVLGTTAKEAAVVAD 412 Query 375 ALRRAHLIDGVPWSQMAVIVRSVPRAVR-LPRALAAAGVPVAPPAVGGPLSAEPAVRALL 433 LRRAHL+DG+ WS MAVIVRSVPR + L RAL AAGVPV A PL+ + V LL Sbjct 413 TLRRAHLLDGIAWSDMAVIVRSVPRTLAPLRRALLAAGVPVTTAATELPLARQHGVSGLL 472 Query 434 TVLEAT-ADGLDGDQALLLLTGPIGGVDPV---------------------SLRQLRRTL 471 VL A D GD AL L+ GPIGG +PV S LR L Sbjct 473 LVLRALGGDQFTGDDALALMAGPIGGAEPVTLRRLRRGLRRVELASGSDRDSSELLRLIL 532 Query 472 QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRH 531 Q+ R G L + + AL RV +VL AR LG ++ Sbjct 533 IDEDRAQSKRLMGKL-----------TDVEAAALNRVLSVLR-KARVPLERGLGVEE--- 577 Query 532 TLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVE 591 LWAAWQ +GL+RRW AAS GG QA RDL+ V ALFD +YV R + L G V+ Sbjct 578 VLWAAWQATGLERRWAAASARGGPIGSQADRDLDAVVALFDAAANYVDRLPRSQLAGFVD 637 Query 592 HVTALQLPV-VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGT 650 ++T+ ++P R + V V+SAHAA G EW +V +AG+Q+GLWP+ RG +L T Sbjct 638 YLTSQEIPTDSRSRSVITPDAVTVVSAHAAAGREWAVVAVAGVQEGLWPSLRARGSLLRT 697 Query 651 QRLLDELDGVTKDA-------SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGH 703 + L+D ++GV+ + S APLLAEERRL + A RARRRLL+TAV+S G Sbjct 698 EALIDLVNGVSDGSDSAAERLSRTAPLLAEERRLFLVACSRARRRLLITAVES---ASGD 754 Query 704 EAVLPSAFFFEIAQWADGDGEPVAMQPVSAP-----RVLSAAAVVGRLRVVVCAPACAVD 758 ++PS F E+ + +P + V AP RVLS A+V +LR VVC P A Sbjct 755 TDLVPSRFVDELIRGDVYADDPSSDLDVVAPETGDTRVLSLPALVAQLRSVVCDPDIAHF 814 Query 759 DADRDC-AATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQALND 816 D ++ AA QLARLA AGV GA P +W+G A ST+ P+ +D V+L+PST++ L Sbjct 815 DPEKHSRAARQLARLAAAGVRGAHPDQWYGTAEPSTAAPMWQPEDGPVSLSPSTIELLET 874 Query 817 CPLRWLAERHGGTNTRELPSAVGSVLHALF-AEPGR-SESQLLAELDRVWGHLPFGAQWY 874 CPLRW+ ERHGG++ + G+++H L A GR Q+ L+ W + G+QWY Sbjct 875 CPLRWVFERHGGSDGDNTHAIAGTLVHTLVQALAGRIPPDQVEKALENAWESIDLGSQWY 934 Query 875 SANELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLER 934 S EL R R M+ F W +R ELTEVGVEV ++G LE A ++LRGR DRLER Sbjct 935 SRRELNRTREMLATFTAWMNATRGELTEVGVEVAVEGVLEPREEGAPAVKLRGRIDRLER 994 Query 935 DPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRA--GDEPGGARLVYVGKS 992 D GR V+VD+KT + PVS + AQ HAQLA YQ+A AEG + +PGGARLV+V KS Sbjct 995 DTEGRPVVVDVKTARNPVSNEAAQSHAQLAAYQVAAAEGAIAGEPATQPGGARLVFVAKS 1054 Query 993 GAA-GVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVR 1051 G A+R Q PLT A + WR+++ AAAT GPQ++AR NDGC HCP+R CPAH Sbjct 1055 NKKDGAAQRVQPPLTAEAVEMWRDVIHNAAAATQGPQYLARVNDGCRHCPVRSSCPAHDE 1114 Query 1052 G 1052 G Sbjct 1115 G 1115 >gi|312140618|ref|YP_004007954.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] gi|311889957|emb|CBH49274.1| putative UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] Length=1105 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/1075 (49%), Positives = 652/1075 (61%), Gaps = 52/1075 (4%) Query 14 APGLRG--PVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTT 71 AP RG P +LGGPGTGK+TLLV+AAVA I AG DPESVL+LT S R R +T Sbjct 41 APPGRGWHPWQILGGPGTGKTTLLVDAAVARIVAGEDPESVLVLTQSRRAATAIREQITE 100 Query 72 ALLRSRTN----GPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIR 127 LL + + G A REP+VRTVHSYA+AVLR A G+ PRL+T AEQDA++R Sbjct 101 RLLAAEHDPESPGVQPRATREPLVRTVHSYAFAVLRLQAAAHGNPPPRLITGAEQDAVLR 160 Query 128 ELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGR 187 ELL GD DG WP LRPAL GFA ELRNL+ R ERGL P +L LG + Sbjct 161 ELLRGDIADGGG---MWPERLRPALGMTGFAVELRNLMLRANERGLGPEDLIDLGYAHDK 217 Query 188 PEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERA 247 EW+AAG+FA YEQ MLLRGAVG+ AP+ATAPAL AAEL+ AAL AFA D +LL ERA Sbjct 218 AEWVAAGRFAAHYEQGMLLRGAVGMEAPEATAPALDAAELISAALTAFATDRDLLRRERA 277 Query 248 RVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGL--LADDPP 305 RVR LLVDDAQ LDPQAA+LVR++ GT IAGDP+QA+F FRG +P L LAD Sbjct 278 RVRHLLVDDAQHLDPQAAQLVRLIGTGTASTAIAGDPDQAIFAFRGADPRFLTGLADRGD 337 Query 306 PAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTE---VGSVTVRLA 362 PA V L + R APAVAR IA LPG R TE G VR+ Sbjct 338 PA------QVILDTNFRAAPAVARVAGRIAGLLPGNPPHRGAAVPVTEDDTDGRAVVRVL 391 Query 363 GSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAV-RLPRALAAAGVPVAPPAVGG 421 + EAA++AD LRRAHLIDGVPWS+MA++ RSVPR + L RAL +AGVPV A Sbjct 392 STPAKEAALVADTLRRAHLIDGVPWSEMAIVARSVPRVLPPLRRALLSAGVPVTTAASEL 451 Query 422 PLSAEPAVRALLTVLEATADG-LDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 PL+ + V LL+V+ A G G+ A+ LL+GPIGG +PVSLR+LRR L+R Sbjct 452 PLAKQHGVAGLLSVMRALVGGEFTGEDAIALLSGPIGGAEPVSLRRLRRGLRRVELASGG 511 Query 481 RKFGDLLVEVLGGDAPPSG------PG-----SRALRRVRAVLTAAARCHRSGSLGGQDP 529 + L+ L D P + PG S +LRRV VL R R G+ Sbjct 512 DRDSAELLRALIVDGPDADGVAHLLPGLTDVESLSLRRVLKVL----RRARVPLQRGRGI 567 Query 530 RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGL 589 LWAAWQ +GL+RRW AAS GG QA RDL+ V ALFD +YV R A L G Sbjct 568 EEVLWAAWQATGLERRWAAASAFGGPIGAQADRDLDAVVALFDAAANYVDRLPRAQLSGF 627 Query 590 VEHVTALQLPVVRPEPA-APTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVL 648 V+++ +P P A A E V VLSAH+A G +W +VV+ G+Q+GLWP+ RG +L Sbjct 628 VDYLVEQAIPGPAPMRAVASQETVTVLSAHSAAGRQWRVVVVLGVQEGLWPSLGARGTLL 687 Query 649 GTQRLLDELDG---VTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEA 705 GT+ L++ G V K S APLLAEERRL + A RAR LLVTAVDS + G Sbjct 688 GTEELIEITSGLGEVDKTLSRTAPLLAEERRLFLVACSRARDSLLVTAVDSSS---GDTE 744 Query 706 VLPSAFFFEIAQWADG-DGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDC 764 ++ S F ++ + AD D + VA PRVL+ A+V LR VVC P AV D +R Sbjct 745 LVRSRFVDDLLRGADDLDVDEVAPVTDDTPRVLALPALVAELRSVVCDPDVAVADPERQQ 804 Query 765 -AATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQALNDCPLRWL 822 AA QLARLA+AGV GA P +W+G + S+ L D +D V L+PST++ + +CPLRW+ Sbjct 805 RAAHQLARLAEAGVRGAHPDQWYGTSAPSSDVGLWDPEDGPVPLSPSTIELIANCPLRWM 864 Query 823 AERHGGTNTRELPSAVGSVLHALF-AEPGR-SESQLLAELDRVWGHLPFGAQWYSANELA 880 ERHGG++ + G+++H L A G Q+ L+ W + G++W+S EL Sbjct 865 LERHGGSDGDNTHAIAGTLVHTLVQALAGHIPPDQVDHALETAWDSVDLGSEWFSRRELE 924 Query 881 RHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRL 940 R R M+ F W +RSELTE+GVEV +DG LE + +R+RGR DRLERD GR Sbjct 925 RTRGMLDNFADWLRGTRSELTEIGVEVAVDGVLEPRTEGEATVRIRGRIDRLERDSDGRP 984 Query 941 VIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRA--GDEPGGARLVYVGK-SGAAGV 997 V++D+KT K V+K+ A+QHAQLA YQ+A A GL+ +PGGARLV+V K G Sbjct 985 VVIDVKTAKAAVTKEQAEQHAQLAAYQVAAARGLIDGVPASQPGGARLVFVAKPHKKEGS 1044 Query 998 AERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 +R Q L W N++ AAAT GP F+AR NDGC HCP+ CPAH G Sbjct 1045 TQRIQSALDDDGVALWENVIHDAAAATRGPTFLARINDGCRHCPVLSSCPAHDEG 1099 >gi|325675755|ref|ZP_08155439.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707] gi|325553726|gb|EGD23404.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707] Length=1094 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/1075 (49%), Positives = 652/1075 (61%), Gaps = 52/1075 (4%) Query 14 APGLRG--PVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTT 71 AP RG P +LGGPGTGK+TLLV+AAVA I AG DPESVL+LT S R R +T Sbjct 30 APPGRGWHPWQILGGPGTGKTTLLVDAAVARIVAGEDPESVLVLTQSRRAATAIREQITE 89 Query 72 ALLRSRTN----GPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIR 127 LL + + G A REP+VRTVHSYA+AVLR A G+ PRL+T AEQDA++R Sbjct 90 RLLAAEHDPESPGVQPRATREPLVRTVHSYAFAVLRLQAAAHGNPPPRLITGAEQDAVLR 149 Query 128 ELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGR 187 ELL GD DG WP LRPAL GFA ELRNL+ R ERGL P +L LG + Sbjct 150 ELLRGDIADGGG---MWPERLRPALGMTGFAVELRNLMLRANERGLGPEDLIDLGYAHDK 206 Query 188 PEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERA 247 EW+AAG+FA YEQ MLLRGAVG+ AP+ATAPAL AAEL+ AAL AFA D +LL ERA Sbjct 207 AEWVAAGRFAAHYEQGMLLRGAVGMEAPEATAPALDAAELISAALTAFATDRDLLRRERA 266 Query 248 RVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGL--LADDPP 305 RVR LLVDDAQ LDPQAA+LVR++ GT IAGDP+QA+F FRG +P L LAD Sbjct 267 RVRHLLVDDAQHLDPQAAQLVRLIGTGTASTAIAGDPDQAIFAFRGADPRFLTGLADRGD 326 Query 306 PAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTE---VGSVTVRLA 362 PA V L + R APAVAR IA LPG R TE G VR+ Sbjct 327 PA------QVILDTNFRAAPAVARVAGRIAGLLPGNPPHRGAAVPVTEDDTDGRAVVRVL 380 Query 363 GSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAV-RLPRALAAAGVPVAPPAVGG 421 + EAA++AD LRRAHLIDGVPWS+MA++ RSVPR + L RAL +AGVPV A Sbjct 381 STPAKEAALVADTLRRAHLIDGVPWSEMAIVARSVPRVLPPLRRALLSAGVPVTTAASEL 440 Query 422 PLSAEPAVRALLTVLEATADG-LDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTS 480 PL+ + V LL+V+ A G G+ A+ LL+GPIGG +PVSLR+LRR L+R Sbjct 441 PLAKQHGVAGLLSVMRALVGGEFTGEDAIALLSGPIGGAEPVSLRRLRRGLRRVELASGG 500 Query 481 RKFGDLLVEVLGGDAPPSG------PG-----SRALRRVRAVLTAAARCHRSGSLGGQDP 529 + L+ L D P + PG S +LRRV VL R R G+ Sbjct 501 DRDSAELLRALLVDGPDADGVAHLLPGLTDVESLSLRRVLKVL----RRARVPLQRGRGI 556 Query 530 RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGL 589 LWAAWQ +GL+RRW AAS GG QA RDL+ V ALFD +YV R A L G Sbjct 557 EEVLWAAWQATGLERRWAAASAFGGPIGAQADRDLDAVVALFDAAANYVDRLPRAQLSGF 616 Query 590 VEHVTALQLPVVRPEPA-APTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVL 648 V+++ +P P A A E V VLSAH+A G +W +VV+ G+Q+GLWP+ RG +L Sbjct 617 VDYLVEQAIPGPAPMRAVASQETVTVLSAHSAAGRQWRVVVVLGVQEGLWPSLGARGTLL 676 Query 649 GTQRLLDELDG---VTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEA 705 GT+ L++ G V K S APLLAEERRL + A RAR LLVTAVDS + G Sbjct 677 GTEELIEITSGLGEVDKTLSRTAPLLAEERRLFLVACSRARDSLLVTAVDSSS---GDTE 733 Query 706 VLPSAFFFEIAQWADG-DGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDC 764 ++ S F ++ + AD D + VA PRVL+ A+V LR VVC P AV D +R Sbjct 734 LVRSRFVDDLLRGADDLDVDEVAPVTDDTPRVLALPALVAELRSVVCDPDVAVADPERQQ 793 Query 765 -AATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQALNDCPLRWL 822 AA QLARLA+AGV GA P +W+G + S+ L D +D V L+PST++ + +CPLRW+ Sbjct 794 RAAHQLARLAEAGVRGAHPDQWYGTSAPSSDVGLWDPEDGPVPLSPSTIELIANCPLRWM 853 Query 823 AERHGGTNTRELPSAVGSVLHALF-AEPGR-SESQLLAELDRVWGHLPFGAQWYSANELA 880 ERHGG++ + G+++H L A G Q+ L+ W + G++W+S EL Sbjct 854 LERHGGSDGDNTHAIAGTLVHTLVQALAGHIPPDQVDHALETAWDSVDLGSEWFSRRELE 913 Query 881 RHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRL 940 R R M+ F W +RSELTE+GVEV +DG LE + +R+RGR DRLERD GR Sbjct 914 RTRGMLDNFADWLRGTRSELTEIGVEVAVDGVLEPRTEGEATVRIRGRIDRLERDSDGRP 973 Query 941 VIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRA--GDEPGGARLVYVGK-SGAAGV 997 V++D+KT K V+K+ A+QHAQLA YQ+A A GL+ +PGGARLV+V K G Sbjct 974 VVIDVKTAKAAVTKEQAEQHAQLAAYQVAAARGLIDGVPASQPGGARLVFVAKPHKKEGS 1033 Query 998 AERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 +R Q L W N++ AAAT GP F+AR NDGC HCP+ CPAH G Sbjct 1034 TQRIQSALDDDGVALWENVIHDAAAATRGPTFLARINDGCRHCPVLSSCPAHDEG 1088 >gi|333921407|ref|YP_004494988.1| putative ATP-dependent DNA helicase [Amycolicicoccus subflavus DQS3-9A1] gi|333483628|gb|AEF42188.1| putative ATP-dependent DNA helicase [Amycolicicoccus subflavus DQS3-9A1] Length=1052 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/1069 (46%), Positives = 645/1069 (61%), Gaps = 69/1069 (6%) Query 23 VLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALLRSRTNGPC 82 +LGGPGTGK+ L + AVA + AG DPES+L+LT S R +T+ALL + P Sbjct 3 LLGGPGTGKTAYLADLAVAMMAAGVDPESILVLTHSRAASTSMREVITSALLAEGGSAP- 61 Query 83 RAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGPAATT 142 A REP+VRTVHSYA+AVLR A + G+ PRL+TS+EQDA+ RE+L GD EDG Sbjct 62 -QATREPLVRTVHSYAFAVLRLQAAQYGNPPPRLITSSEQDAVFREMLHGDIEDG---AD 117 Query 143 TWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFAQRYEQ 202 WP LRPAL AGFA+ELR LL R AERGL P +L +LGR+ + EW+AAG+FA YEQ Sbjct 118 YWPTELRPALGLAGFASELRGLLRRSAERGLGPEDLVKLGRKHRKAEWVAAGRFAAVYEQ 177 Query 203 VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDAQQLDP 262 LLRG+VG+ PQATAPAL AAELV +A+ A ++DP+LL ER RVR LLVDDAQ LDP Sbjct 178 STLLRGSVGMEVPQATAPALDAAELVSSAVTALSIDPDLLQRERQRVRYLLVDDAQHLDP 237 Query 263 QAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGL--LADDPPPAGGAPIPSVTLTVS 320 QAA L+ +L GTEL +IAGD +Q+VF FRG EP L LAD+ A + + Sbjct 238 QAAWLIELLGTGTELTVIAGDSDQSVFRFRGAEPAFLERLADNETAA------RIVFAEN 291 Query 321 HRCAPAVARAVTGIARRLPGRSVGRRIEGTG--TEVGSVTVRLAGSAHAEAAMIADALRR 378 HR AP + AV +A +LPG R++ E G VR+ + EAA +AD LRR Sbjct 292 HRSAPEIVAAVARVAAKLPGMQPQRKVFTVSPAKETGRAMVRVLSTPAREAAAVADTLRR 351 Query 379 AHLIDGVPWSQMAVIVRSVPR-AVRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLE 437 AHL D VPWS+MAVIVRSVP+ + L RAL AAGVPV P PL + A R+LL VL+ Sbjct 352 AHLHDEVPWSRMAVIVRSVPQLSAPLRRALLAAGVPVNTPVPELPLGRQRASRSLLLVLK 411 Query 438 ATA------DGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQ-TSRKFGDLLVEV 490 A A L ++ L LL GPIGG DP++LR++RR ++RA + R +L + Sbjct 412 AVAGPPGQESSLTAEEVLELLAGPIGGADPLTLRRMRRGIRRAEVARGGDRDSAVVLTRL 471 Query 491 LGGDAPPSGPG---------SRALRRVRAVLTAAARCHRSGSLGGQDPRH-----TLWAA 536 + + G + + R+R VL A + RH LW Sbjct 472 ICSPETSADSGILGALTPVEAAPVERLRKVLRRARKVRE---------RHRGLEAVLWEV 522 Query 537 WQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTAL 596 W+ +G +R+W+ + GG A QA RDL+ V ALFD +YV R AS+ G +++ Sbjct 523 WRAAGRERQWVRQALRGGPAGAQADRDLDAVVALFDAAANYVDRLPAASIAGFADYIAHQ 582 Query 597 QL---PVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRL 653 +L PVVR A + V +LSAHAA G+EWD+V +AG+Q+G+WP+ RG VL + Sbjct 583 ELPAEPVVRNVTRA--DSVTLLSAHAAAGNEWDVVAVAGVQEGVWPSLRGRGSVLNAGDI 640 Query 654 LD----ELDGVTKDASMR-APLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLP 708 D ++ G + R APLLA+ER+L + A RARR+LLVTA S + G ++P Sbjct 641 DDVMRRDMTGESATPVSRLAPLLADERKLFLVACSRARRQLLVTAAQSVS---GQSDLVP 697 Query 709 SAFFFEIAQWADGDGE--PVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAA 766 S F E+ A E P + + VL+ A+V +LR VVC+P C + D AA Sbjct 698 SRFIDELGLGASAGQEEAPRSERSEEPETVLALPALVAKLRAVVCSP-CESEGRKSD-AA 755 Query 767 TQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQALNDCPLRWLAER 825 QL RLA+AGVPGA P EW+GL ++T + ++D V ++PST+ L+ CPLRWL ER Sbjct 756 VQLGRLAEAGVPGAHPQEWYGLRSITTDRAMWTAEDGPVRMSPSTVDQLSKCPLRWLLER 815 Query 826 HGGTNTRELPSAVGSVLHALF-AEPGR-SESQLLAELDRVWGHLPFGAQWYSANELARHR 883 HGG++ + + G ++H L A G S++Q+ L + W + G+ WY+ +E AR Sbjct 816 HGGSDGNDASAVKGVLVHTLTQAIAGNISDAQVREALVQAWDKVDLGSPWYARHERARIE 875 Query 884 AMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIV 943 M+ F +W +SR+ELTE GVEV +DG L D +G+ +RLRGR DRLE D GR VIV Sbjct 876 NMLSHFDEWLRRSRTELTEAGVEVAVDGVLADPTGEGPDVRLRGRIDRLEHDTEGRPVIV 935 Query 944 DIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLV--RAGDEPGGARLVYVGK-SGAAGVAER 1000 D+KT +TPVS A HAQLA YQ+A A GL+ EPGGARLV+V K G AER Sbjct 936 DVKTARTPVSATSALDHAQLATYQVAAASGLIDGEPAAEPGGARLVFVAKPHKNTGAAER 995 Query 1001 KQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAH 1049 Q LT +W +L+R A AT GP F AR NDGC+HCP+R CPA Sbjct 996 SQPALTAEQVQQWISLIRDAAKATRGPAFEARINDGCSHCPVRSSCPAQ 1044 >gi|262203379|ref|YP_003274587.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247] gi|262086726|gb|ACY22694.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247] Length=1129 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/1091 (47%), Positives = 636/1091 (59%), Gaps = 77/1091 (7%) Query 20 PVLVLGGPGTGKSTLLVEAAVAHIGA-GTDPESVLLLTGSGRMGMRARSALTTALLRSRT 78 P+ + GGPG+GK+ L+V+AAVA + A +PESVL+L S + R +T +L Sbjct 56 PIRIHGGPGSGKTALIVDAAVARLRAPDVEPESVLVLASSRQAAATLREEITRRVLAGSD 115 Query 79 NGPCR----AAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDA 134 R A+REP+VRTVHSYA+A+LR A + PRL+T +EQD ++RELLAGD Sbjct 116 ATDGRRALGGALREPLVRTVHSYAFAILRLQASAHNNPPPRLITGSEQDVVLRELLAGDI 175 Query 135 EDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAG 194 EDG WPAHLRPAL T GFA LR+L+ R AERG P EL LGRR RPEW+AA Sbjct 176 EDG---AGYWPAHLRPALGTDGFAQALRDLMMRAAERGAGPEELAALGRRHRRPEWVAAA 232 Query 195 QFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLV 254 + +YEQ MLLRGAVGL AP A+APA+ AAELVG+AL AFA DPELL A+RAR+R LLV Sbjct 233 RAYAQYEQNMLLRGAVGLEAPGASAPAVDAAELVGSALSAFATDPELLIAQRARIRHLLV 292 Query 255 DDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPS 314 DDAQ LDPQAA+LV+++ GT LIA D +Q+VFGFRG +P ADD G Sbjct 293 DDAQHLDPQAAQLVKLIGTGTTSTLIAADTDQSVFGFRGADPR--FADDLAEPGSDR--D 348 Query 315 VTLTVSHRCAPAVARAVTGIARRLPGRSVGRR----IEGTGTEVGSVTVRLAGSAHAEAA 370 + L + R + R +A RLPG E T G V VR+ GS+ EA Sbjct 349 ILLDTNFRSEAQIERVGRVLASRLPGARPHPYPQAPAESPATGAGGVQVRVFGSSAKEAT 408 Query 371 MIADALRRAHLIDGVPWSQMAVIVRSVPRAVR-LPRALAAAGVPVAPPAVGGPLSAEPAV 429 +AD LRRAHL DGVPWS+MAVIVRSV A+ L RA +AGVP+ PA G PL + AV Sbjct 409 AVADLLRRAHLFDGVPWSRMAVIVRSVSLALPPLRRAFRSAGVPLTTPASGLPLHRQRAV 468 Query 430 RALLTVLE--------ATADGLDGDQALLLLTGPIGGVDPVSLRQLR-----RTLQRARP 476 AL+ VL A AD D + A LL+GPIG DP ++R+LR + +R Sbjct 469 VALMLVLRVVAARTTPAQADDFDIEDAAALLSGPIGAADPGAMRRLRRGVRRSSEKRGDD 528 Query 477 GQTSRKFGDLLVEVLGGDAPPSGPGSRA---------LRRVRAVLTAAARCHRSGSLGGQ 527 G L +L P R L RV V+ AA + H +G + Sbjct 529 GAQQDSLTALRSAILD---PLLAARYREDLTDAERAPLDRVLDVVAAAEKVHTAG----R 581 Query 528 DPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLR 587 TLWA WQ +GL+RRW A++ GG QA RDL+ V A+F+ ++ A Sbjct 582 GLEETLWAGWQATGLERRWAASAVRGGPGGEQADRDLDAVMAMFEAAANFADTLPAAGPA 641 Query 588 GLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGV 647 G V ++ LQ+P A ++ V VLSAHAA+G EWD+V +AG+ DGLWP+ RG V Sbjct 642 GFVHYLGQLQIPRDSRTATAASDSVTVLSAHAAVGREWDVVAVAGVLDGLWPSLRSRGSV 701 Query 648 LGTQRLLDELDGVTKDASMR----APLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGH 703 L T +L+D LDGV DA + A +A+ERRLL+ A RARRRLLVTAV+ +G Sbjct 702 LATGQLVDLLDGVDPDAVDKLARPAAAIADERRLLLVACTRARRRLLVTAVEDGSGEAS- 760 Query 704 EAVLPSAFFFEIA-------QWADGDG---EPVAMQPVSAPRVLSAAAVVGRLRVVVCAP 753 PS F EIA Q AD D E + + P RVLS ++V LR VV A Sbjct 761 ----PSRFIGEIADALAGSTQDADADTPAPEELPLDP-GVDRVLSLPSLVATLRSVVTAG 815 Query 754 ACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQ 812 + D AA LARLA A VPGA P +W+GLA S+ PL DD V L+PS + Sbjct 816 VGEMPDERTMAAARLLARLADADVPGAHPRDWYGLAAPSSDAPLWTPDDGAVVLSPSNVD 875 Query 813 ALNDCPLRWLAERHGGTNTRELPSAVGSVLHALF-AEPGRSESQLLAE-LDRVWGHLPFG 870 AL C LRWL ER+GG + P+ GS++H L A G + + E L +W + G Sbjct 876 ALTRCSLRWLLERNGGRDGDGTPALTGSLVHTLVQAVAGELDPTEVTEALRAIWDRVDTG 935 Query 871 AQWYSANELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRAD 930 A WYSA EL R +M+ F +W SRS+L EVGVE+ +D + + +RLRGR D Sbjct 936 AGWYSARELERAESMLVNFREWLRISRSDLDEVGVELAVDATIP-ATPDDPAVRLRGRMD 994 Query 931 RLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGD------EPGGA 984 RLERD AGR V+VD+KT KTP+SK DAQ HAQLA YQ+A+A G + D EPGGA Sbjct 995 RLERDGAGRPVVVDVKTAKTPISKADAQDHAQLAAYQVALAHGGLTGADDAVVSAEPGGA 1054 Query 985 RLVYVGKSG-AAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLR 1043 RLVYV + +G AER Q PL+P DEW +VR A A+ GP + A N GC HC L Sbjct 1055 RLVYVSSANRNSGAAERVQAPLSPELLDEWITVVRHAARASVGPVYAATPNPGCGHCALA 1114 Query 1044 PGCPAHVRGSA 1054 CPA +RG A Sbjct 1115 ASCPAQIRGKA 1125 >gi|343927590|ref|ZP_08767058.1| putative ATP-dependent DNA helicase [Gordonia alkanivorans NBRC 16433] gi|343762231|dbj|GAA13984.1| putative ATP-dependent DNA helicase [Gordonia alkanivorans NBRC 16433] Length=1133 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/1092 (46%), Positives = 635/1092 (59%), Gaps = 75/1092 (6%) Query 20 PVLVLGGPGTGKSTLLVEAAVAHI-GAGTDPESVLLLTGSGRMGMRARSALTTALLRSRT 78 PV V GGPG+GK+ L+V+AAVA + TDPESVL+L S R + R +T +L + Sbjct 56 PVRVHGGPGSGKTALIVDAAVARLLDPATDPESVLVLASSRRAAVALREEITRRVLSANA 115 Query 79 NG--PCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAED 136 G A+REP+VRTVHSYA+A+LR A G+ PRL+T +EQD ++RELLAGD ED Sbjct 116 TGRRVLGGALREPLVRTVHSYAFAILRLQASAHGNPPPRLITGSEQDVVLRELLAGDIED 175 Query 137 GPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQF 196 G WPAHLRPAL T GFA LR+L+ R AERG+ P EL LGR RPEW AA + Sbjct 176 G---AEYWPAHLRPALGTDGFAQALRDLMMRAAERGVGPEELAALGREHKRPEWTAAARA 232 Query 197 AQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDD 256 +YEQ MLLRGAVGL P A+APA+ AAEL+G+AL AFA DPELL+ ER R+R LLVDD Sbjct 233 YAQYEQNMLLRGAVGLETPGASAPAVDAAELIGSALSAFATDPELLSGERRRIRHLLVDD 292 Query 257 AQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVT 316 AQ LDPQAA+L+R++ GT +IA D +Q+VFGFRG P AD AG + Sbjct 293 AQHLDPQAAQLIRLVGTGTTSTIIAADTDQSVFGFRGASPR--FADGLAEAGSE--RDIV 348 Query 317 LTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGS------VTVRLAGSAHAEAA 370 L R P +AR IA RLPG + TE + VR+ GSA EA Sbjct 349 LEHDFRSHPDLARLGRAIAARLPGARPHAYPQPVQTESAAGVPRDVAAVRVYGSAAKEAT 408 Query 371 MIADALRRAHLIDGVPWSQMAVIVRSVPRAV-RLPRALAAAGVPVAPPAVGGPLSAEPAV 429 IAD LRRAHL DGVPWSQMAVIVRSV A+ L RA +AGVPV PA PL + AV Sbjct 409 AIADLLRRAHLFDGVPWSQMAVIVRSVSLALPPLRRAFRSAGVPVTTPASDLPLHRQRAV 468 Query 430 RALLTVLEATA----------------DGLDGDQALLLLTGPIGGVDPVSLRQL------ 467 AL+ VL A + + L LL+GP+G DP ++R+L Sbjct 469 IALMLVLRVVAARREDPSTRSEATPQRELFTTEDTLTLLSGPVGAADPGAMRRLRRGIRR 528 Query 468 --RRTLQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRA--LRRVRAVLTAAARCHRSGS 523 + A+P + LL LG + + A L RV V+ A R H + Sbjct 529 LDEKNDPTAQPDSLTSLTRALLDPELGARYRRALTVTEAAPLARVLDVVAAGQRAHDA-- 586 Query 524 LGGQDPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSG 583 G+ TLWAAWQ +GL+RRW A++ GG A QA RDL+ V A+F+ ++ Sbjct 587 --GRGVEETLWAAWQATGLERRWAASAVRGGPAGEQADRDLDAVMAMFEAAANFADTLPA 644 Query 584 ASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVP 643 A G V +++ LQ+P A +E V VLSAHAA+G EW++V +AG+QDGLWP+ Sbjct 645 AGPAGFVHYLSQLQIPRDSRTATAASESVTVLSAHAAVGREWEVVAVAGVQDGLWPSLRS 704 Query 644 RGGVLGTQRLLDELDGVTKDA----SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699 RGGVL T L+D LDG+ A + A LA+ERRL + A RAR RLLVTAV+ +G Sbjct 705 RGGVLSTGALVDILDGMDAGAVDTVARGATALADERRLFLVACTRARSRLLVTAVEDGSG 764 Query 700 GGGHEAVLPSAFFFEIAQWAD--GDGEPVA---MQPVSAPRVLSAAAVVGRLRVVVCAPA 754 PS F E+A D D P A + P RVLS ++V LR VV A Sbjct 765 DAS-----PSRFLTELADLVDDPDDEAPQAELRLDP-GVDRVLSLPSLVATLRSVVMGGA 818 Query 755 CAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQA 813 DD R AA LA LA + +PGA P +W GLA ST PL D V L+PS ++A Sbjct 819 HEPDDRTR-AAARLLAELADSDIPGAHPRDWFGLAEPSTDAPLWTPDTGPVVLSPSNVEA 877 Query 814 LNDCPLRWLAERHGGTNTRELPSAVGSVLHALF-AEPGRSE-SQLLAELDRVWGHLPFGA 871 LN C LRW+ ER+GG + P+ GS++H L A G+ + +++ A L +W + GA Sbjct 878 LNRCSLRWVLERNGGRDGDGTPALTGSLVHTLVQAVAGQLDPAEVTAALRGIWDRVDTGA 937 Query 872 QWYSANELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDG------SGQARKIRL 925 WYSA EL R +M+ F W SR++L EVGVE+ +D + G S A +RL Sbjct 938 GWYSARELERAESMLGHFRDWLRISRADLEEVGVELPVDATVPGGPTGDPDSADAPDVRL 997 Query 926 RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLV-RAGD-EPGG 983 RGR DRLE D AGR V+VD+KT K ++K +A +HAQ+A YQ+A+A G V + GD PGG Sbjct 998 RGRVDRLETDSAGRPVVVDVKTSKNAITKAEADEHAQMAAYQVALAHGGVPQFGDVPPGG 1057 Query 984 ARLVYVGKSG-AAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPL 1042 ARLVYV + +G AER Q PLTP DEW +VR+ A A+ GP F A N GC HC L Sbjct 1058 ARLVYVSTANRNSGAAERVQSPLTPEMLDEWIGVVRRAARASIGPTFHATPNPGCVHCNL 1117 Query 1043 RPGCPAHVRGSA 1054 CPA + G A Sbjct 1118 TTSCPAKIPGKA 1129 >gi|257054746|ref|YP_003132578.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017] gi|256584618|gb|ACU95751.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017] Length=1066 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/1061 (48%), Positives = 626/1061 (60%), Gaps = 51/1061 (4%) Query 18 RGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALL--R 75 RG V VLG PGTGK+TLL A A I G D ESVL+LT S + R+ +T L R Sbjct 25 RGFVRVLGAPGTGKTTLLAATAAARIAEGADEESVLVLTASRQAADALRADITRRLTGHR 84 Query 76 SRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAE 135 G R +REP+VRTVHSYA+AVLR A R G +PRLL+ EQD ++RELLAGD E Sbjct 85 GERAGEVRT-VREPIVRTVHSYAFAVLRLQAVRDGLPVPRLLSGPEQDVVVRELLAGDLE 143 Query 136 DGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQ 195 G WP LRPAL GFA ELR+LL R AERGL P +L +LG R+GR EW+AAG+ Sbjct 144 RG---APDWPEPLRPALAVPGFAEELRDLLLRAAERGLGPEDLIKLGHRQGRDEWVAAGR 200 Query 196 FAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVD 255 F ++YE+V LL+G G A ++ APAL AAELV +AL DPELLA E+ARVR L VD Sbjct 201 FWRQYEEVTLLQGVGGHAVGESGAPALDAAELVASALVELEGDPELLAGEQARVRHLFVD 260 Query 256 DAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSV 315 DAQ LDP RLVR+LA A++AGDP+Q+VF FRG +P L AD P +V Sbjct 261 DAQHLDPLQYRLVRLLAETASDAVLAGDPDQSVFSFRGADPR-LFADADPDGDR----TV 315 Query 316 TLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTE----VGSVTVRLAGSAHAEAAM 371 LT SHR P V AV IA LPG S R T T G V RL+ + AEAA Sbjct 316 VLTRSHRLDPVVHEAVGRIAATLPGTSAHRASVPTPTRGREGRGKVRTRLSPTPAAEAAW 375 Query 372 IADALRRAHLIDGVPWSQMAVIVRSVPRAV-RLPRALAAAGVPVAPPAVGGPLSAEPAVR 430 IAD LRRAHL+DGVPWSQMAV++RSV R++ L RAL AG+PVA PL+ +PAVR Sbjct 376 IADQLRRAHLLDGVPWSQMAVLMRSVSRSLPVLQRALTMAGIPVAAVTEELPLARQPAVR 435 Query 431 ALLTVLEATADG--LDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARP-GQTSRKFGDLL 487 LLTVL A AD LD + A +LL+ P+GG DP++LR+LRR L+R R +LL Sbjct 436 PLLTVLWAAADPRVLDAETAEMLLSSPLGGADPLALRRLRRGLRRLELVAGGERSSDELL 495 Query 488 VEVL-GGDAPPSGPGSRA--LRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQR 544 VE L GD + A +RRV +LT A RSG+ G +D LW WQ SGLQ Sbjct 496 VEALRDGDVLAGLADAEAAPVRRVSRLLTVAREAMRSGA-GVED---VLWQVWQASGLQD 551 Query 545 RWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPE 604 R +A + GG ++A RDL+ V ALFD YV R A + G VE++++ + Sbjct 552 RLVAQAAKGGTLGMRADRDLDAVVALFDAARRYVDRLPKAGVLGFVEYLSSQHIAGDSLA 611 Query 605 PAAPT-EQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKD 663 P A V +L+AH A+G EW +V I GLQ+G+WP+ RG VLG +RL+D L GV D Sbjct 612 PVAVRGSGVSLLTAHGAVGREWSVVAILGLQEGMWPDLRLRGSVLGVERLVDLLSGVDDD 671 Query 664 A----SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEI---- 715 A S APLLAEERRL A RAR LLV+AV E PS FFF++ Sbjct 672 AVATVSATAPLLAEERRLFYVAASRARHTLLVSAVQG-------EDEQPSRFFFDLVDAG 724 Query 716 AQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKA 775 G G V + V+ R L+ A +VG LR V ++ R AA QLARLA+ Sbjct 725 VDTERGGGPDVRL--VARERGLTLAELVGELRAAVT--DTELEPRRRKLAARQLARLARD 780 Query 776 GVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELP 835 GVPGA P +W+GLA S+ PL + D+++ ++PS + L CPLRWL ERHGGT+ +L Sbjct 781 GVPGAHPEQWYGLAGNSSDRPLREPDEVIRVSPSVVDTLVKCPLRWLLERHGGTDPAQLS 840 Query 836 SAVGSVLHAL--FAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWR 893 + G+++HAL A G E L ELD W + GA W+S E R M+++F+ W Sbjct 841 AVTGTLVHALAQAAAEGTDEQTLWKELDEAWAKVDAGAPWFSRKERVRVEGMVRSFLTWL 900 Query 894 AQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVS 953 QSR ELT+ VE D+ +L + G+ + L GR DRLE D GR V++D+KT K+PV+ Sbjct 901 RQSRDELTQHAVEQDMRVSLPEAEGEP-SVALTGRVDRLELDAEGRPVVIDLKTSKSPVA 959 Query 954 KDDAQQHAQLAMYQLAVAEGLVRAGD-EPGGARLVYVGKSGA-AGVAERKQDPLTPAARD 1011 KD A +H QLA+YQLA G GGARL+YVGK A G R+Q L Sbjct 960 KDAAAEHPQLAVYQLATLLGAFSGHKGHTGGARLLYVGKPNAKTGATVREQPALDEETAR 1019 Query 1012 EWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 W N VR+ A T GP + R N C+ CP R CP G Sbjct 1020 RWLNEVRKAAVDTVGPTYPVRENVDCSRCPSRSACPLRPEG 1060 >gi|300783059|ref|YP_003763350.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] gi|299792573|gb|ADJ42948.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] gi|340524438|gb|AEK39643.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei S699] Length=1057 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/1067 (47%), Positives = 624/1067 (59%), Gaps = 41/1067 (3%) Query 2 SHIWGVEAGAAL-APGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 S W A L APG G + VLGGPGTGK+ LL AA I G DPESVL+LT S + Sbjct 10 SFTWDAGARRVLSAPG--GFLRVLGGPGTGKTALLASAATRRIAEGADPESVLVLTTSRK 67 Query 61 MGMRARSALTTALLRSRTNG-PCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTS 119 R+ +T L P +REP+VRTVHSYAY++LR A PRLL Sbjct 68 SADALRADITRRLTADPEQARPLPRTVREPLVRTVHSYAYSLLRLEAMAEELPPPRLLAG 127 Query 120 AEQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQ 179 AEQD ++RELLAGD ++ WP LRPAL GFA ELR+LL R AERGL P +L Sbjct 128 AEQDVVVRELLAGDLDE---EAEYWPEQLRPALLVPGFAEELRDLLMRAAERGLGPGDLA 184 Query 180 QLGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDP 239 +LGRRRGR EWIAAGQF +YE+V L+GA G A A+APAL AAELV +AL A D Sbjct 185 ELGRRRGREEWIAAGQFWAQYEEVTQLQGAGGNALGVASAPALDAAELVTSALLALEDDD 244 Query 240 ELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGL 299 EL ER RVR L VDDA LDP LVRM+ ++AGDP+Q VF FRG + L Sbjct 245 ELRERERTRVRHLFVDDAHHLDPLQTSLVRMIGHTAAEFVVAGDPDQNVFSFRGAD-ARL 303 Query 300 LADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRI-EGTGTEVGSVT 358 AD P +VTLT +HR APAV AV I LPG S R+I G G+V Sbjct 304 FADADPDGSR----TVTLTTAHRLAPAVRLAVAKIGATLPGASPHRKIVPPAGASGGTVR 359 Query 359 VRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPP 417 VR+ + AEA+ IAD LRRAHL+DGVPWS++AV+VRS R + L RAL AAGVP+ Sbjct 360 VRVMPTPAAEASWIADQLRRAHLVDGVPWSEIAVLVRSPARTFLVLQRALRAAGVPIGSA 419 Query 418 AVGGPLSAEPAVRALLTVLE--ATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRAR 475 PL+ +PAVR LL VL+ + + LD D A +LL+ +GG DP++LR+LRR L+R Sbjct 420 TEELPLAKQPAVRPLLAVLKLAPSPELLDIDLAEMLLSSALGGADPLALRRLRRGLRRLE 479 Query 476 P-GQTSRKFGDLLVEVL-GGD--APPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRH 531 G R +LLVE L GGD A + + +RRV +L R G+ Sbjct 480 LAGGGQRSSDELLVEALRGGDILAGLADAEAEPVRRVGGLL----RVTHQAVARGEGVEQ 535 Query 532 TLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVE 591 LW W+ SGLQ + L +E GG+ QA RDL+ V ALFD YV R +S+ + Sbjct 536 VLWQLWRESGLQDKLLKQAERGGSLGAQADRDLDAVVALFDAAGRYVDRLPRSSVASFAD 595 Query 592 HVTALQLPVVRPEPAA-PTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGT 650 ++ A ++ PAA P++ V +L+AHAA G EW +V +AG+Q+G WP+ RG VLG Sbjct 596 YLGAQRIAGDTLAPAAVPSDGVSLLTAHAAAGREWTVVAVAGVQEGAWPDLRLRGSVLGV 655 Query 651 QRLLDELDGVTKDA-SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPS 709 +RL D + GV DA S AP+LAEERRL AM RA++ LLVTAV E PS Sbjct 656 ERLKDLMAGVDDDAVSQTAPILAEERRLFYLAMSRAKQTLLVTAVSG-------EDEQPS 708 Query 710 AFFFEIAQ-WADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQ 768 F ++ + AD G M+P R L A +VG LR VVC A R AA Q Sbjct 709 RFLDDLEENGADDGGLDSRMKPPG--RSLVLAELVGELREVVCDDKADP--ARRRRAAKQ 764 Query 769 LARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGG 828 LARLA+A VPGA PS W+GL P S+ +P+ DL+ ++PST++ L CPLRW+ ERHGG Sbjct 765 LARLAEARVPGAHPSTWYGLLPASSDEPVHPPGDLIRISPSTVEILTKCPLRWMIERHGG 824 Query 829 TNTRELPSAVGSVLHAL--FAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMI 886 ++ +L + G+++H L G ++++L A LD W + GA W+S E R M+ Sbjct 825 SDPAQLAAVTGTLVHGLAQAVASGSTDAELQAALDEAWVRVDAGAPWFSRRERRRVEQML 884 Query 887 QAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIK 946 + F W QSR EL E GVE DI+ L GS ++ LRGR DR+E D GR VIVDIK Sbjct 885 RNFTTWLEQSRKELKEAGVEQDIEVELPAGSEDEVRVLLRGRVDRVELDAEGRPVIVDIK 944 Query 947 TGKTPVSKDDAQQHAQLAMYQLAVAEGLVRAGDEPGGARLVYVGK-SGAAGVAERKQDPL 1005 TGK PVS +A+ H QLA YQLAV G + E GGARLVYV K + G ER Q PL Sbjct 945 TGKVPVSGAEAEAHPQLAAYQLAVLLGAIEGRTEAGGARLVYVAKANNKTGATERSQPPL 1004 Query 1006 TPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 +W LV++ AA+ AGP + A+ N C CP R CP G Sbjct 1005 DEVGGKQWLELVQKAAASAAGPDYQAQENPDCDRCPARGCCPLRPEG 1051 >gi|256374999|ref|YP_003098659.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827] gi|255919302|gb|ACU34813.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827] Length=1050 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/1052 (47%), Positives = 617/1052 (59%), Gaps = 59/1052 (5%) Query 19 GPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALLRSRT 78 GP+ VLGGPGTGK+TL+ E A + AG PESVL+LT + R R+ LT AL+R Sbjct 35 GPLRVLGGPGTGKTTLIAETAARRVHAGAAPESVLVLTANRRAAESLRAHLT-ALIRRTP 93 Query 79 NGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGP 138 +G +REP+VRTVHSYA+AVLR A R G+ PRLL EQDA++REL+ GD E G Sbjct 94 DGELLPVVREPLVRTVHSYAFAVLRARAVRDGEPPPRLLAGPEQDAVVRELITGDVEAG- 152 Query 139 AATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFAQ 198 WP LRPAL GFA ELR+LL R ERGL P +L LG GR EW+AAG F + Sbjct 153 --ARDWPERLRPALALPGFAGELRDLLLRAVERGLAPEDLVALGEGHGRDEWVAAGLFGE 210 Query 199 RYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDAQ 258 +YEQV LL A Q APA AAELV AL AF D ELL+ ERARVR + VDDAQ Sbjct 211 QYEQVSLL-------ASQGLAPAYDAAELVDNALLAFENDEELLSGERARVRHVYVDDAQ 263 Query 259 QLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVTLT 318 LDP L+R + + + L+ GDP+QAVF FRG +P L+ D P V L+ Sbjct 264 HLDPLQHALIRAVGSAADEFLLFGDPDQAVFSFRGADPRLLVDGDSP--------QVVLS 315 Query 319 VSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADALRR 378 SHR AV A G+A RLPG S R + G E G+ VRL S EA+ +AD LRR Sbjct 316 RSHRLPSAVRAATAGLASRLPGASPAREVSPVG-EGGTTQVRLFASEAQEASWVADRLRR 374 Query 379 AHLIDGVPWSQMAVIVRSVPRAV-RLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLE 437 AHL+DGVPWS+MAV+VRS R++ + RAL AAGVPVA P PL+ +PAV LL +L Sbjct 375 AHLVDGVPWSRMAVVVRSATRSLPVIQRALLAAGVPVAVPGTDLPLARQPAVTPLLALLR 434 Query 438 ATA--DGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRAR-PGQTSRKFGDLLVEVLGG- 493 A LD D A +LL+ P+GG DP++LR+LRR L+R R G+LLVEV+ Sbjct 435 CAAVPGSLDEDTAAMLLSSPLGGADPLALRRLRRGLRRLEIAAGRDRPSGELLVEVIEDR 494 Query 494 ------DAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWL 547 + S P R R +R TA R S+ LW WQ +GLQ RW+ Sbjct 495 DRLAALEDAESAPARRVARLLR---TARDSIRRGSSV-----EVVLWDLWQDTGLQDRWV 546 Query 548 AASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAA 607 A S G +QA RDL+ V ALF+ YV R GAS G +++ A + AA Sbjct 547 AMSSRHGTTGMQADRDLDAVVALFETAAKYVDRLPGASPDGFADYLEAQHIVGDTLAAAA 606 Query 608 PT-EQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASM 666 P E V VL+AHA+ G EW++V + G+Q+G WP+ RG +LG +RL+D + GV AS Sbjct 607 PVGEAVAVLTAHASAGQEWEVVAVPGVQEGTWPDLRLRGSLLGVERLVDLVSGVGAGASA 666 Query 667 RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPV 726 APLLAEERRLL+ A RARR LLV+AV E PS F E+ +G+ E Sbjct 667 VAPLLAEERRLLLVATSRARRVLLVSAVRG-------EDAQPSRFLDELEDAGEGETERR 719 Query 727 AMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWH 786 P R L A +VG LR VVC P + D DR AATQLARLA GVPGA P W+ Sbjct 720 ITPP---ERGLVLAELVGELRRVVCDPGESEDRRDR--AATQLARLAADGVPGAHPDTWY 774 Query 787 GLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLH--A 844 GLAPV+T PL + V+++PST++ L+ CP+RW+ ERHGG + EL S G+++H A Sbjct 775 GLAPVTTDVPLWTEEHTVSVSPSTVETLSKCPVRWVVERHGGQDPAELASITGTLVHALA 834 Query 845 LFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSELTEVG 904 A G E++L +LD W + GA W+S E R M+ AF+ W + SR +LT+V Sbjct 835 QAAASGAGEAELKEKLDEAWTAVDAGAPWFSRRERMRVERMLDAFLAWLSASRGQLTQVS 894 Query 905 VEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLA 964 VE +I L G R +++RGR DRLE D GR V+VDIKT KTPVS+ DAQ+H QLA Sbjct 895 VEEEISVDLPKVEGGPR-LKVRGRVDRLETDRDGRPVVVDIKTAKTPVSRKDAQEHPQLA 953 Query 965 MYQLAVA-EGLVRAG--DEPGGARLVYVGKSG-AAGVAERKQDPLTPAARDEWRNLVRQL 1020 +YQLA A G G +PGGA L+YV K G A+ +Q PL W V++ Sbjct 954 VYQLASALGGFTHLGLATDPGGAALLYVAKENKKTGAAQLEQTPLDEQGVRVWLERVQEA 1013 Query 1021 AAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 A ++ GP + A N C CP R CP H G Sbjct 1014 AGSSVGPGYRAEENPDCDRCPARTSCPVHASG 1045 >gi|326383309|ref|ZP_08204997.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] gi|326198059|gb|EGD55245.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] Length=1101 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/1081 (46%), Positives = 634/1081 (59%), Gaps = 72/1081 (6%) Query 20 PVLVLGGPGTGKSTLLVEAAVAHI-GAGTDPESVLLLTGSGRMGMRARSALTTALLRSRT 78 P V GGPGTGK++L+V+ AVA + G DPESVL+L + R + R+ +T +L + Sbjct 43 PWRVHGGPGTGKTSLIVDTAVARLLDPGVDPESVLVLAANRRAATQLRAEITRRVLSA-- 100 Query 79 NGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGP 138 G A+REP+VRTVHSYA+AVLR A G+ PRL+T +EQD I+RELLAGD EDG Sbjct 101 GGSLGGALREPLVRTVHSYAFAVLRLQASAHGNPPPRLITGSEQDVILRELLAGDVEDG- 159 Query 139 AATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFAQ 198 WPA LRPALTT GFA LR+L+ R AERGL P +L +LGR RPEW+AAG + Sbjct 160 --ADYWPASLRPALTTDGFAQALRDLMMRAAERGLGPQDLAELGRTHDRPEWVAAGHAFR 217 Query 199 RYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDAQ 258 +YE+ MLLRGAVGL AP+A+ A+ AAEL+G+AL AFA DP++LA +R R+R +LVDDAQ Sbjct 218 QYEEGMLLRGAVGLDAPEASVTAVDAAELIGSALSAFATDPDVLAGQRQRIRHVLVDDAQ 277 Query 259 QLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEP--TGLLADDPPPAGGAPIPSVT 316 LDPQAA L+R++ G + ++A D +Q+VFGFRG +P +ADD P + Sbjct 278 HLDPQAASLIRLIGTGADSTVVASDTDQSVFGFRGADPRFANAVADDDPDR------DIL 331 Query 317 LTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEV----GSVTVRLAGSAHAEAAMI 372 L R +PAV +A RLPG R + G VR+ SA EA + Sbjct 332 LENDFRGSPAVNAVGRALALRLPGARPHRYPTAAEPDDPEHRGHADVRVFSSAAKEATAV 391 Query 373 ADALRRAHLIDGVPWSQMAVIVRSVPRAV-RLPRALAAAGVPVAPPAVGGPLSAEPAVRA 431 AD +RRAHL DGVPWS+MAVIVRSVPRA+ + RA ++AGVP+A PA P+ + AV A Sbjct 392 ADMMRRAHLFDGVPWSEMAVIVRSVPRALPAIRRAFSSAGVPMATPATDIPIHRQRAVAA 451 Query 432 LLTVLEATADG--LDGDQALLLLTGPIGGVDPVSLRQLRRTLQ-----RARPGQT----S 480 VL G LD D+ LLTGP+G DP +LR+LRR ++ R R + + Sbjct 452 FSLVLRVAGGGPPLDADEVTALLTGPVGAADPTNLRRLRRGIRRIDEARGREADSLDSLA 511 Query 481 RKFGD--LLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQ 538 R D L+ LGG + + AL++VR V+ AA H +G +G ++ TLW AW Sbjct 512 RALDDPELMGTYLGG---LTDFEAIALKQVRKVVDAARTAHTAG-VGVEE---TLWRAWS 564 Query 539 RSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQL 598 SGL+RRW A S GG QA RD++ + A+F+ + A + G V+++ LQ+ Sbjct 565 ASGLERRWTAQSLRGGRGGDQADRDMDAMLAMFEAAGTFADNLPAAGVLGFVDYLGQLQI 624 Query 599 PVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELD 658 P + E V V+SAHAA G EWD+V + G+ DGLWP+ RG VL T L+D L Sbjct 625 PRESRVAVSGVESVAVVSAHAAAGREWDVVAVPGVLDGLWPSLRSRGSVLHTPALIDLLS 684 Query 659 GVTKDA----SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFE 714 GV DA + A +LA+ERRLL+ A RAR RLLVTA++ +G PS F E Sbjct 685 GVGADAVDTVARGAVMLADERRLLLVACTRARSRLLVTAIEDGSGDAS-----PSRFVPE 739 Query 715 IAQWADGDGEPVAMQPVSAP---------RVLSAAAVVGRLRVVVCAPACAVDDADR--D 763 IA+ G G A +P SA RVLS ++V LR V A A A D Sbjct 740 IAEALGGYG---ATEPESADEIPLDPGVRRVLSLPSLVAELRAVAVAGADASGGPDERTR 796 Query 764 CAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQALNDCPLRWL 822 AA LA LA+AGV GA P++W GL ST PL ++ TL+PS + AL C LRW+ Sbjct 797 VAAALLADLAQAGVSGAAPADWFGLVGPSTEVPLWTPENGPRTLSPSNVDALTKCSLRWM 856 Query 823 AERHGGTNTRELPSAVGSVLHALF-AEPGR-SESQLLAELDRVWGHLPFGAQWYSANELA 880 ERHGG + + G+++H L A G +++ A L VW + AQWYSA EL Sbjct 857 LERHGGRDGDAEQAVTGTLVHTLVQAVAGNLDRTEVNAALHEVWERVSSPAQWYSARELE 916 Query 881 RHRAMIQAFVQWRAQSRSELTEVGVEVDIDGAL----EDGSGQARKIRLRGRADRLERDP 936 R M+ F W SR +LT GVEV++D L +D +RL GR DRLE D Sbjct 917 RAEGMLTNFRDWLRISREDLTAAGVEVEVDATLPTGVDDHGNALLPVRLVGRMDRLETDS 976 Query 937 AGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEGLVR--AGDEPGGARLVYVGKSG- 993 GR V+VD+KTGK PV DA+ H QLA YQLA+ G V EPGG RLVYV + Sbjct 977 RGRPVVVDVKTGKNPVRAVDAEVHPQLATYQLALRLGGVTGLGSTEPGGGRLVYVASANK 1036 Query 994 AAGVAERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRGS 1053 G A+R Q PLTP DEW ++VR+ A A+ GP F A N GC+HC L CPA +RG Sbjct 1037 KTGAAQRVQPPLTPEQVDEWISVVREAARASVGPVFTATPNSGCSHCSLVQSCPAQLRGK 1096 Query 1054 A 1054 A Sbjct 1097 A 1097 >gi|291006368|ref|ZP_06564341.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length=1058 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/1056 (48%), Positives = 623/1056 (59%), Gaps = 59/1056 (5%) Query 19 GPVLVLGGPGTGKSTLLVEAAVAHI-GAGTDPESVLLLTGSGRMGMRARSALTTALLRSR 77 G + VLGGPGTGKSTL+ E A I G PE+VL+L S R R R+ +T L + Sbjct 35 GFLRVLGGPGTGKSTLIAEVAADRIRHGGVAPENVLVLCASRRAAARMRAEITRRL--TA 92 Query 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDG 137 ++ R A EP+VRTVHSYA+AVLR A R PRLL +QDA++R+LL GD E+G Sbjct 93 SDDGLRTAP-EPLVRTVHSYAFAVLRLQAVREQMPAPRLLNGPDQDALVRDLLQGDLEEG 151 Query 138 PAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFA 197 WP LRPAL+ GFA ELR+LL R AERG+ P L +LGRR RPEW+AAG+FA Sbjct 152 ---APDWPERLRPALSVPGFAEELRDLLLRAAERGVGPDGLVELGRRHDRPEWVAAGRFA 208 Query 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDA 257 ++YEQV LLRG A + AAELV +AL AF DP+LL ER RVR LLVDDA Sbjct 209 RQYEQVTLLRGG-------GDAAGMDAAELVSSALLAFDTDPDLLHVERQRVRHLLVDDA 261 Query 258 QQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVTL 317 Q LDPQ L++ L + ++AGDP+QAVF FRG +P G + D P G +V L Sbjct 262 QHLDPQQYWLLQRLGSTAAEFVLAGDPDQAVFTFRGADP-GSVRDADPDGGN----TVVL 316 Query 318 TVSHRCAPAVARAVTGIARRLPGRSVGRRI-EGTGTEVGSVTVRLAGSAHAEAAMIADAL 376 TV HR + AV AV +A RLPG RR+ E GSV VRL S EAA +AD L Sbjct 317 TVDHRMSKAVRAAVQRLAERLPGAGPQRRLAEPEDCPGGSVQVRLHASEAQEAAWVADQL 376 Query 377 RRAHLIDGVPWSQMAVIVRSVPRAVRLP---RALAAAGVPVAPPAVGGPLSAEPAVRALL 433 RRAHL+DGVPWS MAV+VRS + LP RAL AA VP+ P PL+ AVR LL Sbjct 377 RRAHLLDGVPWSDMAVVVRST--GLSLPVLRRALLAASVPLVLPVDDVPLAQRTAVRPLL 434 Query 434 TVLEATA--DGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQT-SRKFGDLLVEV 490 T+L LD D A LL +GG DP++LR+LRR L+R SR GDLLVEV Sbjct 435 TLLRCAGRPQALDPDSAAELLASSLGGADPLALRRLRRGLRRLELAAGGSRSSGDLLVEV 494 Query 491 LGGD---APPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWL 547 L GD A + R+V +L A R G+ LW WQ SGLQ+RWL Sbjct 495 LRGDDALAALDDSSAGPARKVAHLLKVA----REAVDDGRSVEEVLWRVWQASGLQQRWL 550 Query 548 AASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAA 607 +E GG QA RDL+ V +LF+ YV R GA + G +++T Q+ P+A Sbjct 551 TVAERGGITGAQADRDLDAVVSLFEAAAQYVDRLPGADVAGFADYLTGQQIAGSSLAPSA 610 Query 608 PTEQ-VMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV--TKDA 664 P E V VL+AHAA G EW++V I G+Q+G WP+ RG +LG +RL+D L GV Sbjct 611 PKENAVSVLTAHAAAGQEWEVVAIPGVQEGTWPDLRLRGSLLGVERLVDVLSGVDAADRV 670 Query 665 SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEI-AQWADGDG 723 S APLLAEERRLL+ A RAR LLV+AV E PS F E+ +D D Sbjct 671 SATAPLLAEERRLLLVAASRARSGLLVSAVRG-------EDEQPSRFLDELEGVVSDPDS 723 Query 724 EPVAMQPVSAP-RVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADP 782 A +P++ P R L A +VG LR VVC R+ AA QLARLA AGVPGA P Sbjct 724 ---AERPIARPERGLVLAELVGELRQVVCD--VQAPARRRERAAAQLARLADAGVPGAHP 778 Query 783 SEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVL 842 W+GL P S PL + D+ V ++PST+ L+ CPLRW+AERHGG +T EL S G+++ Sbjct 779 DTWYGLPPSSCQSPLVEGDEPVRVSPSTVDTLSKCPLRWMAERHGGQDTAELASVTGTLV 838 Query 843 HALF--AEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 HAL A G +E QL LD W + GA W+S E AR MI++F W SR+EL Sbjct 839 HALVQAAADGATEEQLHRALDEAWESVDAGAPWFSRKERARVERMIESFQAWLVASRAEL 898 Query 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 T+VGVE D+D +E G +RLRGR DRLE D GR V+VD+KTGKTPVSK+DA++H Sbjct 899 TQVGVERDLDLTIE-GRDGGPSLRLRGRVDRLEADGEGRPVVVDVKTGKTPVSKNDAEEH 957 Query 961 AQLAMYQLAVAEGLVRAG--DEPGGARLVYVGKSGA--AGVAERKQDPLTPAARDEWRNL 1016 QLA+YQLA A G G EPGGARL+YV K A ER Q L W ++ Sbjct 958 PQLAVYQLAAALGAFNDGAWTEPGGARLLYVAKPEARTGAATERVQRGLDRDRVQVWLDV 1017 Query 1017 VRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 V AA++ GP ++A N C CP R CP H G Sbjct 1018 VHDAAASSVGPAYVASENADCPRCPARTCCPVHPAG 1053 >gi|134097673|ref|YP_001103334.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133910296|emb|CAM00409.1| possible ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length=1051 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/1058 (48%), Positives = 626/1058 (60%), Gaps = 63/1058 (5%) Query 19 GPVLVLGGPGTGKSTLLVEAAVAHI-GAGTDPESVLLLTGSGRMGMRARSALTTALLRSR 77 G + VLGGPGTGKSTL+ E A I G PE+VL+L S R R R+ +T L + Sbjct 28 GFLRVLGGPGTGKSTLIAEVAADRIRHGGVAPENVLVLCASRRAAARMRAEITRRL--TA 85 Query 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDG 137 ++ R A EP+VRTVHSYA+AVLR A R PRLL +QDA++R+LL GD E+G Sbjct 86 SDDGLRTAP-EPLVRTVHSYAFAVLRLQAVREQMPAPRLLNGPDQDALVRDLLQGDLEEG 144 Query 138 PAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFA 197 WP LRPAL+ GFA ELR+LL R AERG+ P L +LGRR RPEW+AAG+FA Sbjct 145 ---APDWPERLRPALSVPGFAEELRDLLLRAAERGVGPDGLVELGRRHDRPEWVAAGRFA 201 Query 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDA 257 ++YEQV LLRG A + AAELV +AL AF DP+LL ER RVR LLVDDA Sbjct 202 RQYEQVTLLRGG-------GDAAGMDAAELVSSALLAFDTDPDLLHVERQRVRHLLVDDA 254 Query 258 QQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVTL 317 Q LDPQ L++ L + ++AGDP+QAVF FRG +P G + D P G +V L Sbjct 255 QHLDPQQYWLLQRLGSTAAEFVLAGDPDQAVFTFRGADP-GSVRDADPDGGN----TVVL 309 Query 318 TVSHRCAPAVARAVTGIARRLPGRSVGRRI-EGTGTEVGSVTVRLAGSAHAEAAMIADAL 376 TV HR + AV AV +A RLPG RR+ E GSV VRL S EAA +AD L Sbjct 310 TVDHRMSKAVRAAVQRLAERLPGAGPQRRLAEPEDCPGGSVQVRLHASEAQEAAWVADQL 369 Query 377 RRAHLIDGVPWSQMAVIVRSVPRAVRLP---RALAAAGVPVAPPAVGGPLSAEPAVRALL 433 RRAHL+DGVPWS MAV+VRS + LP RAL AA VP+ P PL+ AVR LL Sbjct 370 RRAHLLDGVPWSDMAVVVRST--GLSLPVLRRALLAASVPLVLPVDDVPLAQRTAVRPLL 427 Query 434 TVLEATA--DGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQT-SRKFGDLLVEV 490 T+L LD D A LL +GG DP++LR+LRR L+R SR GDLLVEV Sbjct 428 TLLRCAGRPQALDPDSAAELLASSLGGADPLALRRLRRGLRRLELAAGGSRSSGDLLVEV 487 Query 491 LGGD---APPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWL 547 L GD A + R+V +L A R G+ LW WQ SGLQ+RWL Sbjct 488 LRGDDALAALDDSSAGPARKVAHLLKVA----REAVDDGRSVEEVLWRVWQASGLQQRWL 543 Query 548 AASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAA 607 +E GG QA RDL+ V +LF+ YV R GA + G +++T Q+ P+A Sbjct 544 TVAERGGITGAQADRDLDAVVSLFEAAAQYVDRLPGADVAGFADYLTGQQIAGSSLAPSA 603 Query 608 PTEQ-VMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV--TKDA 664 P E V VL+AHAA G EW++V I G+Q+G WP+ RG +LG +RL+D L GV Sbjct 604 PKENAVSVLTAHAAAGQEWEVVAIPGVQEGTWPDLRLRGSLLGVERLVDVLSGVDAADRV 663 Query 665 SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEI-AQWADGDG 723 S APLLAEERRLL+ A RAR LLV+AV E PS F E+ +D D Sbjct 664 SATAPLLAEERRLLLVAASRARSGLLVSAVRG-------EDEQPSRFLDELEGVVSDPDS 716 Query 724 EPVAMQPVSAP-RVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADP 782 A +P++ P R L A +VG LR VVC R+ AA QLARLA AGVPGA P Sbjct 717 ---AERPIARPERGLVLAELVGELRQVVCD--VQAPARRRERAAAQLARLADAGVPGAHP 771 Query 783 SEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVL 842 W+GL P S PL + D+ V ++PST+ L+ CPLRW+AERHGG +T EL S G+++ Sbjct 772 DTWYGLPPSSCQSPLVEGDEPVRVSPSTVDTLSKCPLRWMAERHGGQDTAELASVTGTLV 831 Query 843 HALF--AEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 HAL A G +E QL LD W + GA W+S E AR MI++F W SR+EL Sbjct 832 HALVQAAADGATEEQLHRALDEAWESVDAGAPWFSRKERARVERMIESFQAWLVASRAEL 891 Query 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQH 960 T+VGVE D+D +E G +RLRGR DRLE D GR V+VD+KTGKTPVSK+DA++H Sbjct 892 TQVGVERDLDLTIE-GRDGGPSLRLRGRVDRLEADGEGRPVVVDVKTGKTPVSKNDAEEH 950 Query 961 AQLAMYQLAVAEGLVRAG--DEPGGARLVYVGK----SGAAGVAERKQDPLTPAARDEWR 1014 QLA+YQLA A G G EPGGARL+YV K +GAA ER Q L W Sbjct 951 PQLAVYQLAAALGAFNDGAWTEPGGARLLYVAKPEARTGAA--TERVQRGLDRDRVQVWL 1008 Query 1015 NLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 ++V AA++ GP ++A N C CP R CP H G Sbjct 1009 DVVHDAAASSVGPAYVASENADCPRCPARTCCPVHPAG 1046 >gi|302524414|ref|ZP_07276756.1| ATP-dependent DNA helicase [Streptomyces sp. AA4] gi|302433309|gb|EFL05125.1| ATP-dependent DNA helicase [Streptomyces sp. AA4] Length=1057 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/1046 (47%), Positives = 610/1046 (59%), Gaps = 40/1046 (3%) Query 23 VLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALLRS-RTNGP 81 VLGGPGTGK+ LL AA I G DPESVLLLT S R R+ LT L P Sbjct 30 VLGGPGTGKTALLATAAARRIAEGADPESVLLLTTSRRAADALRADLTRRLTSDPDQESP 89 Query 82 CRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGPAAT 141 + EP+VRTVHSYA+++LR A+ PRLL AEQD ++RELL GD E+G Sbjct 90 LPRTVSEPLVRTVHSYAFSLLRLEARAEELPPPRLLAGAEQDVVVRELLEGDLEEG---A 146 Query 142 TTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFAQRYE 201 T+WP LRPALT GFA ELR+LL R AERGL P +L +LG R+ R EW+AAGQF +YE Sbjct 147 TSWPEQLRPALTVPGFAEELRDLLMRAAERGLGPEDLTELGHRQDREEWVAAGQFWAQYE 206 Query 202 QVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDAQQLD 261 +V L+GA G A APAL AAELV +AL A D EL ER RVR L VDDA LD Sbjct 207 EVTQLQGAGGNALGLPAAPALDAAELVTSALLALEDDEELRERERGRVRHLFVDDAHHLD 266 Query 262 PQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVTLTVSH 321 P +L+R + E ++AGDP+Q+VF FRG +P L AD + +V LT SH Sbjct 267 PLQVQLIRTIGHTAEEFVVAGDPDQSVFSFRGADPK-LFAD----SDNDGDRTVMLTTSH 321 Query 322 RCAPAVARAVTGIARRLPGRSVGRR-IEGTGTEVGSVTVRLAGSAHAEAAMIADALRRAH 380 R AP V AV + LPG S R+ + G G V VRL + AEA+ IAD LRRAH Sbjct 322 RLAPTVRAAVAKLGATLPGASPHRKLVTPPGKRGGKVRVRLMPTPAAEASWIADQLRRAH 381 Query 381 LIDGVPWSQMAVIVRSVPRA-VRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLEAT 439 L+DGVPWS+MAV+VRS R + L RAL AAGVP+ PL+ AVR LL VL Sbjct 382 LVDGVPWSEMAVLVRSPARTFLVLQRALRAAGVPIGSATEELPLAKHSAVRPLLAVLRIA 441 Query 440 ADG--LDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARP-GQTSRKFGDLLVEVL-GGDA 495 A+ LD D A +LL+ +GG DP++LR+LRR L+R G R +LLVE L GGD Sbjct 442 AEPELLDVDIAEMLLSSSLGGADPLALRRLRRGLRRLELAGGGQRSSDELLVEALRGGDI 501 Query 496 PPSGPGSRAL--RRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHG 553 + AL RRV +L+ H++ S G+ LW WQ SGLQ R L + G Sbjct 502 LVGLADNEALPVRRVGNLLSI---THQAVSR-GEGVEQVLWELWQASGLQERLLRLVDRG 557 Query 554 GAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAA-PTEQV 612 G+ QA RDL+ V ALFD Y R AS+ +++++ + PAA P E V Sbjct 558 GSLGAQADRDLDAVVALFDSAGRYADRLPKASVAAFADYLSSQNIAGDTLAPAAIPGEGV 617 Query 613 MVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTK--DASMRAPL 670 +L+AHA+ G EW +V +AG+Q+G WP+ RG +LG +RL+D L GV + S AP+ Sbjct 618 SLLTAHASAGREWTVVAVAGVQEGAWPDLRLRGSLLGVERLVDLLSGVDEHDKVSAIAPI 677 Query 671 LAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVA-MQ 729 LAEERRL A RARR LLVTAV AG E PS F ++ + DG + M+ Sbjct 678 LAEERRLFYLAASRARRTLLVTAV---AG----EDEQPSRFLDDLEENGADDGMLDSRMK 730 Query 730 PVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLA 789 P R L A +VG LR VVC D R AA QLARLA AGVPGA P W+GL Sbjct 731 PPG--RSLVLAELVGELREVVCDDKA--DPERRKRAAKQLARLAAAGVPGAHPDTWYGLP 786 Query 790 PVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEP 849 ST DP+ DL+ ++PST++ L CPLRWL ERHGG++ +L + G+++H L Sbjct 787 EASTEDPVHGPGDLMRISPSTVEILVKCPLRWLIERHGGSDPAQLAAVTGTLVHGLAQAI 846 Query 850 --GRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSELTEVGVEV 907 G +E Q+ A LD W + GA W+S E +R M++ FV W +SR EL E GVE Sbjct 847 AGGSTEEQIQAALDEAWVRVDAGAPWFSRRERSRVEQMLRNFVSWLEKSRQELIEAGVEQ 906 Query 908 DIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQ 967 DI+ L G + R + LRGR DR+E D GR VIVDIKTGK PVS DA++H QLA YQ Sbjct 907 DIEVELPMGDEEVR-VLLRGRVDRVEMDKDGRPVIVDIKTGKVPVSGADAEKHPQLAAYQ 965 Query 968 LAVAEGLVRAGDEPGGARLVYVGK-SGAAGVAERKQDPLTPAARDEWRNLVRQLAAATAG 1026 LAV G V + PGGA+LVYV K + G +R Q P+ EW LVR AAA G Sbjct 966 LAVLLGAVEGKNTPGGAKLVYVAKGNNKTGATQRDQPPMDEDNGREWLELVRSAAAAAVG 1025 Query 1027 PQFIARRNDGCTHCPLRPGCPAHVRG 1052 P + A N C CP R CP G Sbjct 1026 PDYQAHENADCDRCPARGCCPLRPEG 1051 >gi|289751890|ref|ZP_06511268.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92] gi|289692477|gb|EFD59906.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92] Length=324 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/324 (99%), Positives = 322/324 (99%), Gaps = 0/324 (0%) Query 596 LQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLD 655 +QLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLD Sbjct 1 MQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLD 60 Query 656 ELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEI 715 ELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEI Sbjct 61 ELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEI 120 Query 716 AQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKA 775 AQWADGDGEPVAMQPVSAPRVLSAAAVVGRLR VVCAPACAVDDADRDCAATQLARLAKA Sbjct 121 AQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDDADRDCAATQLARLAKA 180 Query 776 GVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELP 835 GVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELP Sbjct 181 GVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELP 240 Query 836 SAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQ 895 SAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQ Sbjct 241 SAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQ 300 Query 896 SRSELTEVGVEVDIDGALEDGSGQ 919 SRSELTEVGV VDIDGALEDGSGQ Sbjct 301 SRSELTEVGVGVDIDGALEDGSGQ 324 >gi|296138859|ref|YP_003646102.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162] gi|296026993|gb|ADG77763.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162] Length=1094 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/1067 (45%), Positives = 614/1067 (58%), Gaps = 51/1067 (4%) Query 12 ALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHI-GAGTDPESVLLLTGSGRMGMRARSALT 70 AL G P + GGPGTGK++ L++ AVA + +PESVL+LTGS R + R L+ Sbjct 47 ALDVGGWAPYRIRGGPGTGKTSALIDIAVAKLTDPFVEPESVLILTGSKRSAVALRRELS 106 Query 71 TALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELL 130 +L R A+ EP+VRTVHS A+AVLR A AG PRL+T +EQDA++RELL Sbjct 107 ARVLADRGRAGVHAS-GEPLVRTVHSLAFAVLRLQAAHAGAPPPRLITGSEQDAVVRELL 165 Query 131 AGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEW 190 G +DG A WP LRPAL T GFA LR+L A+ A+RG P E+ +L R RPEW Sbjct 166 RGHVDDGGA---FWPERLRPALVTGGFAGALRDLFAQAAQRGAGPEEIDELAARYDRPEW 222 Query 191 IAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVR 250 AA + Y+Q LLRG+VGLA P A APA+ AAEL+ AA+ A A D LLA +R R+R Sbjct 223 AAAAAALREYQQTTLLRGSVGLAGPTAVAPAVDAAELIDAAVTALAGDDALLAQQRERIR 282 Query 251 TLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGA 310 LLVDDAQ LDP A+ L+R+L GTEL +IAGDP+QA+ FRG L + D P Sbjct 283 FLLVDDAQNLDPLASALIRLLGTGTELTVIAGDPDQAINSFRGASTRFLQSLDVPAER-- 340 Query 311 PIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAA 370 + L S R + V ++ RLP R + GS VRL +A EA Sbjct 341 ---DIVLERSFRFGEEITATVNRVSSRLPNRFGS--VAPERPRPGSAAVRLFSTAAKEAD 395 Query 371 MIADALRRAHLIDGVPWSQMAVIVRSVPRAVR-LPRALAAAGVPVAPPAVGGPLSAEPAV 429 IA LRR H++ GVPW MA++VRSV +V L RALA AGVPV A PL+ + AV Sbjct 396 AIAAMLRREHVLGGVPWEDMAIVVRSVSASVAPLRRALAYAGVPVTVAADDVPLARQRAV 455 Query 430 RALLTVLEATA--DGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLL 487 ALL+ + A + LD +A+ LL+GP+GG DP++LR++RR ++RA P R ++L Sbjct 456 HALLSTVRAACEPESLDPAEAVALLSGPVGGGDPLTLRRVRRAVRRADPSD-ERGSAEIL 514 Query 488 VEVLGG--DAPPSGPG-----SRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRS 540 V+ G D P + + RV A + AA G++ LWAAW + Sbjct 515 GAVVAGSVDFAPYRAALTELEAEPVERVLAAVHAARAAAVEGTV-----EEVLWAAWSVT 569 Query 541 GLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPV 600 GL RW A + GG+ QA RDL+ V LFD + AS +E++ L +P Sbjct 570 GLSGRWGALALRGGSVGEQADRDLDAVMGLFDAAADFTDTLPTASPARFIEYIEQLHIPR 629 Query 601 V-----RPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLD 655 R P P V V+SAH A G EWD+V +AG+Q+G WPN RGG+LGT+ LLD Sbjct 630 ASGGGRRETPTTPG--VTVVSAHGAAGREWDVVAVAGVQEGRWPNLRRRGGLLGTEELLD 687 Query 656 ELDGVTKDA----SMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAF 711 LDG+ A S PLLAEERRLL+ A RARR LL+TAVD+ G G ++PS F Sbjct 688 ALDGIDPAALPTVSRSLPLLAEERRLLLVACSRARRTLLITAVDTADGDGD---LVPSRF 744 Query 712 FFEIAQWADGDGEPVAMQPVSAPRV-LSAAAVVGRLRVVVCAPACAVDDADRDCAATQLA 770 IA + D E S P L +V LR C P ++++R AA QLA Sbjct 745 LQGIAPSGEEDPETYTPAVESEPAASLDLRTLVATLRAAACDPRR--EESERAHAARQLA 802 Query 771 RLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD-LVTLTPSTLQALNDCPLRWLAERHGGT 829 RLA VPGA P W+GLA ST DPL DD V L+PS ++AL+ C LRW+ ER GG+ Sbjct 803 RLAADRVPGAHPDSWYGLAGASTDDPLWQPDDGPVALSPSNVEALSACALRWMLERFGGS 862 Query 830 NTRELPSAVGSVLHALF-AEPGR-SESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQ 887 + A G+++H L A GR + ++ L++VW + A W++ EL R M++ Sbjct 863 DGDSAKQATGNLVHTLVQAVAGRIPKDEVTRSLEKVWDRVDLEADWFARRELIRTEEMLE 922 Query 888 AFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKT 947 +F W A SRSELTE GVEV ID +E G+ A +++RGR DRLERDP GR V+VD+KT Sbjct 923 SFRAWLAGSRSELTEAGVEVPIDTVIE-GTDGAPDVQIRGRVDRLERDPLGRTVVVDVKT 981 Query 948 GKTPVSKDDAQQHAQLAMYQLAVAE-GLVRAGDEPGGARLVYVGK-SGAAGVAERKQDPL 1005 G+T S+ D Q HAQL YQ+A+A GL + PGG +L+YV K G R+QD L Sbjct 982 GRTLPSQADGQAHAQLRTYQVAIAHGGLGGVPETPGGGKLLYVAKPHNKTGATVREQDAL 1041 Query 1006 TPAARDEWRNLVRQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 TPA DEW ++R+ A T GP+F A N C HC + CP +G Sbjct 1042 TPADVDEWLGVIREAARRTRGPEFAATLNASCQHCAVASCCPVVDKG 1088 >gi|331694961|ref|YP_004331200.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190] gi|326949650|gb|AEA23347.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190] Length=1106 Score = 627 bits (1618), Expect = 3e-177, Method: Compositional matrix adjust. Identities = 505/1098 (46%), Positives = 609/1098 (56%), Gaps = 91/1098 (8%) Query 19 GPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGMRARSALTTALLRSRT 78 GP+ V+GGPGTGK+T+L+ A + G PE+VLLL GS R R LT LL Sbjct 30 GPLRVVGGPGTGKTTVLLAALAERVREGVAPENVLLLVGSRRAAADMRERLTP-LLHPHG 88 Query 79 NGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGP 138 P + RE +VRTVHSYA+ VLR A R GD PRLL AEQD ++RELLAG+ E G Sbjct 89 GDP-ESTTRELLVRTVHSYAFGVLRLHAARHGDPPPRLLAGAEQDVVVRELLAGEIE-GD 146 Query 139 AATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFAQ 198 A + WP LRPAL GFA ELR LL R AERGL P EL LG R G EW AAG+F + Sbjct 147 APDSGWPDRLRPALGLPGFAAELRELLLRAAERGLGPEELFALGERHGVDEWRAAGRFFR 206 Query 199 RYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDAQ 258 YEQV+LLRGA G APQATAPAL +AELV AAL+ A DP+L AAE+ RVR L VDDAQ Sbjct 207 VYEQVVLLRGAAGRGAPQATAPALDSAELVAAALDTLAADPDLRAAEQRRVRHLFVDDAQ 266 Query 259 QLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAPIPSVTLT 318 LDPQ LV L + L+AGD +QAV FRG +P GL A + +V L Sbjct 267 DLDPQQLELVATLGSTASTTLLAGDADQAVLAFRGADPQGLRAVE--------AETVVLD 318 Query 319 VSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTE--VGSVTVRLAGSAHAEAAMIADAL 376 V HR AV A +A RLPG GR G E G V VR+ GS AEAA IAD L Sbjct 319 VDHRSRAAVRAATGRLAARLPGAGAGRVRVAAGPEDDEGQVLVRVFGSVAAEAAWIADRL 378 Query 377 RRAHLIDGVPWSQMAVIVRSVPRAV-RLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTV 435 R AHL+DGVPWS+MAV+ RS R++ L RAL A GVP+ P PL+ +PAV LL V Sbjct 379 RCAHLVDGVPWSEMAVLSRSTRRSLPALRRALVAGGVPIVAPPDELPLARQPAVVPLLMV 438 Query 436 LEATA--DGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQR-------------------- 473 L A + LD D A LLT P+G DP+ +R+LRR L R Sbjct 439 LRAATRPEELDADAAAALLTSPLGSGDPMRMRRLRRGLLRLRAAAEPDPPAAHATGGTAA 498 Query 474 -ARPGQTSRKFGDLLVEVLGGDA----------PPSGPGSRALRRVRAVLTAAARCHRSG 522 A G LLVE L A PPS + LRRV A+L AA R G Sbjct 499 LADVGAERVSSDPLLVEALRAAAAGEPDPLAALPPS--ETAPLRRVGALLATAAAAARDG 556 Query 523 SLGGQDPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTS 582 + LW WQ++GL RW AAS GG A A RDL+ V ALFD Y R Sbjct 557 A----SVEEVLWQVWQQTGLADRWSAASGRGGPAGAAADRDLDAVLALFDAAARYSDRLP 612 Query 583 GASLRGLVEHVTALQLPVVRPEPAAP-TEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNT 641 GA + G +++ QLP P AP + V +L+AHAA G EW +V + G+Q+G WP+ Sbjct 613 GADVAGFTDYLADQQLPTDSLAPRAPGGDAVALLTAHAARGREWRVVAVPGVQEGSWPDL 672 Query 642 VPRGGVLGTQRLLDELDGVTK---DASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDA 698 RG +LG +RL+D L GV + S APLLAEERRL A RA LLV+AV Sbjct 673 RLRGSLLGNERLVDLLAGVAEPDGSVSRVAPLLAEERRLFYVACSRASHTLLVSAVQG-- 730 Query 699 GGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAP-RVLSAAAVVGRLRVVVCAPACA- 756 E PS F E+ G E + V P R L A +VG LR VC P Sbjct 731 -----EDEQPSRFLDELDPLPAGAAE---TRTVHRPGRSLVLAELVGELRRAVCTPGDEP 782 Query 757 VDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALND 816 A R+ AA QLARLA GVPGA P EW+GLAPVST PL ++V ++PS ++ + Sbjct 783 AAVARRERAAAQLARLAADGVPGARPDEWYGLAPVSTDAPLRVPGEVVPVSPSDVERIVA 842 Query 817 CPLRWLAERHGGTNTRELPSAVGSVLHALF--AEPGRSESQLLAELDRVWGHLPFGAQWY 874 CPLRW+ ERHGG + L + GS++HAL + G ++L L W HL GA W+ Sbjct 843 CPLRWVLERHGGGDVGALAAVTGSLVHALVQASAAGAQPAELEDALRSAWSHLDAGAPWF 902 Query 875 SANELARHRAMIQAFVQWRAQSRSE-LTEVGVE--VDIDGALE-----DGSGQARK---- 922 EL R RAM+ AF W SR + L V VE V +D +E DGS Q Sbjct 903 GRRELERVRAMLAAFDDWVRTSRDQGLRLVAVEQPVRLDLPVEGDLPPDGSAQPEVGRSG 962 Query 923 ---IRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEG----LV 975 ++LRGR DRLE D GR V+VD+KTGKT VS A +H QLA+YQLA A G L+ Sbjct 963 GPWLQLRGRVDRLEVDSEGRPVVVDVKTGKTAVSARAAAEHPQLAVYQLAAALGAFGRLL 1022 Query 976 RAGDEPGGARLVYVGKSGAAGVA-ERKQDPLTPAARDEWRNLVRQLAAATAGPQFIARRN 1034 G PGGARLVY+ A+G A E Q PL A WR +V A T+G F+AR + Sbjct 1023 EKGVTPGGARLVYLADRKASGQAKEPSQPPLDAAELARWRGVVATCAEETSGSAFVARVS 1082 Query 1035 DGCTHCPLRPGCPAHVRG 1052 C CP+R CPA G Sbjct 1083 ADCERCPVRTSCPAREAG 1100 >gi|289751891|ref|ZP_06511269.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92] gi|289692478|gb|EFD59907.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92] Length=364 Score = 623 bits (1606), Expect = 6e-176, Method: Compositional matrix adjust. Identities = 330/331 (99%), Positives = 330/331 (99%), Gaps = 0/331 (0%) Query 132 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGR RGRPEWI Sbjct 34 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRCRGRPEWI 93 Query 192 AAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRT 251 AAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRT Sbjct 94 AAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRT 153 Query 252 LLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAP 311 LLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAP Sbjct 154 LLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDPPPAGGAP 213 Query 312 IPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAM 371 IPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAM Sbjct 214 IPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAM 273 Query 372 IADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGGPLSAEPAVRA 431 IADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGGPLSAEPAVRA Sbjct 274 IADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGGPLSAEPAVRA 333 Query 432 LLTVLEATADGLDGDQALLLLTGPIGGVDPV 462 LLTVLEATADGLDGDQALLLLTGPIGGVDPV Sbjct 334 LLTVLEATADGLDGDQALLLLTGPIGGVDPV 364 >gi|296169026|ref|ZP_06850689.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896308|gb|EFG75966.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=402 Score = 568 bits (1464), Expect = 2e-159, Method: Compositional matrix adjust. Identities = 319/404 (79%), Positives = 347/404 (86%), Gaps = 10/404 (2%) Query 1 MSHIWGVEAGAALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGR 60 MS+ WG EA LAPG+RGPV VLGGPGTGKS+LLV AA+A I AG DP SVLLLTGSGR Sbjct 1 MSYTWGPEARVLLAPGVRGPVRVLGGPGTGKSSLLVAAALAQIDAGLDPGSVLLLTGSGR 60 Query 61 MGMRARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSA 120 +G++AR ALTTALLR R G RAA+REP+VRTVH YAYAVLR+AA+RAG+A PRL+TSA Sbjct 61 LGVQARGALTTALLRPRCAG--RAAVREPLVRTVHGYAYAVLRRAAERAGEAPPRLVTSA 118 Query 121 EQDAIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQ 180 EQDAIIRELLAGD EDGP A WPAHL+PAL TAGFATELRN+LARCAERG+DP EL++ Sbjct 119 EQDAIIRELLAGDLEDGPRAAAAWPAHLQPALATAGFATELRNMLARCAERGVDPQELER 178 Query 181 LGRRRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPE 240 LGRR RPEW AAGQFA++YEQVMLLR AVG AAPQAT PAL AAELVGAALEAFA+DPE Sbjct 179 LGRRCRRPEWAAAGQFARQYEQVMLLRAAVGTAAPQATTPALGAAELVGAALEAFAIDPE 238 Query 241 LLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLL 300 LLAAER RVR LLVDDAQQLDPQAARLVR+LAAG +LALIAGDPNQAVFGFRGGE GL Sbjct 239 LLAAERGRVRVLLVDDAQQLDPQAARLVRVLAAGADLALIAGDPNQAVFGFRGGESAGL- 297 Query 301 ADDPPPAGGAP----IPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGS 356 P +G P PSVTLTVSHRCAPAVARAV+GIA RLPG S GRRIEGTG + GS Sbjct 298 ---SPASGWCPQDDDAPSVTLTVSHRCAPAVARAVSGIAHRLPGGSGGRRIEGTGPDEGS 354 Query 357 VTVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRA 400 VTVRLA SAHAEAAMIADALRRAHL+DGVPWSQMAV+VRSVPRA Sbjct 355 VTVRLAASAHAEAAMIADALRRAHLVDGVPWSQMAVVVRSVPRA 398 >gi|297562751|ref|YP_003681725.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847199|gb|ADH69219.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=1060 Score = 561 bits (1445), Expect = 3e-157, Method: Compositional matrix adjust. Identities = 434/1096 (40%), Positives = 558/1096 (51%), Gaps = 126/1096 (11%) Query 19 GPVLVLGGPGTGKSTLLVEAAVAHIGA-GTDPESVLLLTGSGRMGMRARSALTTALLRSR 77 GP+LVL GPGTGK+T +VE+ V I GTDP VL+LT S + R +T L R+ Sbjct 26 GPLLVLAGPGTGKTTTIVESVVDRIDHRGTDPSRVLVLTFSRKAAQELRERITARLRRT- 84 Query 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDG 137 REP+ T HSYAYA++R+ QR GD PRLL+ EQ +RELL G+A DG Sbjct 85 --------TREPLALTFHSYAYALIRREFQRMGDLPPRLLSGPEQLMEVRELLRGEALDG 136 Query 138 PAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWIAAGQFA 197 A WP LRPAL T GFA ELR+ L R ERG+ P EL LGR R R +W+AA F Sbjct 137 AA---DWPERLRPALETRGFAEELRDFLMRAQERGMGPDELAALGRDRDRDDWVAAAGFL 193 Query 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLAAERARVRTLLVDDA 257 RY + A P L+ AELV A + DP + ERA + VD+ Sbjct 194 DRYTGRFDI----------APVPTLNYAELVRVAANLLS-DPGVRERERAAHEAVFVDEY 242 Query 258 QQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGLLADDP---PPAGGAPIPS 314 Q DP L+R LA + GDP+Q+++ FRG E G+L D P P A P Sbjct 243 QDTDPAQEELLRALAGDGRDLVAVGDPDQSIYAFRGAEVRGIL-DFPRRFPTARRTEAPV 301 Query 315 VTLTVSHRCAPAVARAVTGIARRLPGRSVGR--------RIEGTGTEVGSVTVRLAGSAH 366 V L R A+ A G+ RRLP + R G G V V LA SA Sbjct 302 VALRTCRRSGRALLSASRGLTRRLPAVASARGHVNEHRDLTPAEGVPDGEVRVLLADSAA 361 Query 367 AEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAV-RLPRALAAAGVPVAPPAVGGPLSA 425 EAA+IAD LRRAHL+DGVPWS MAV+VRS R + L RAL AA VPVA A P++A Sbjct 362 QEAAVIADTLRRAHLVDGVPWSDMAVLVRSSTRQLPVLRRALTAASVPVAVGADDLPVAA 421 Query 426 EPAVRALLTVLE---ATADGLDGDQALLLLTGPIGGVDPVSLRQL--------------- 467 EP VR +L ++ A A+ LD D A LLT P G D V LR+L Sbjct 422 EPIVRPMLALIRYGLAPAE-LDEDAARELLTSPFGEADTVRLRRLVRALRRLDLDRAHDG 480 Query 468 ------------RRTLQRARPGQTSRKFGDLLVEVLGG-------DAPPSGPGSRALRRV 508 R + R G R LLV+ L D + P +R + + Sbjct 481 GAHGGAPEGDASREGAREERSG-AYRPSAQLLVDALRDPAELTLVDPEIAAPATRVAQAL 539 Query 509 RAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVT 568 R V AR G D LW W+ SGL R L AS GG A RDL+ V Sbjct 540 RTVRDLNAR--------GADAEQVLWELWRDSGLADRLLRASLAGGRRGAAADRDLDAVV 591 Query 569 ALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPT-EQVMVLSAHAALGHEWDL 627 ALF+ Y R S G +E + A ++P AP E V +L+AH + G EW L Sbjct 592 ALFESAARYCDRLPPGSPAGFLEDLAAQEIPGDSLAERAPEGEAVRILTAHRSKGLEWGL 651 Query 628 VVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDAS---MRAPLLAEERRLLVTAMGR 684 VV+AG Q+G WP+ RG +LG + L+D D + D+S + + LL EERRL A+ R Sbjct 652 VVVAGAQEGDWPDLRLRGSLLGVEELVD-TDVHSADSSGAALASKLLDEERRLFYVALTR 710 Query 685 ARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAP-RVLSAAAVV 743 ARR L+VTAV GG PS F E+ G GEP +PVS R LS ++V Sbjct 711 ARRTLVVTAV-----GGEDTDERPSRFLNEM-----GVGEP---EPVSTGLRWLSLPSLV 757 Query 744 GRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDL 803 LR VV P + R+ AAT LARLA+ GV GADP+EW+ L P + PL + +D Sbjct 758 ADLRSVVTDPGAP--EPLREAAATHLARLAEEGVRGADPAEWYALTPFTDDRPLAEEEDT 815 Query 804 VTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS--VLHALFAEPGRSESQLLAELD 861 + ++PS +++ +C LRWL ER G ++ + SA+G+ A+ G + ++ +D Sbjct 816 IRVSPSQVESFTNCQLRWLLERAAGASSGDSASALGTVVHAVAVLVAQGSTPDEISGRMD 875 Query 862 RVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL--TEVGVEVDIDGALEDGSGQ 919 +W L FG W + + R M++ V W A + EL TE G VD+ G Sbjct 876 EIWADLDFGGPWQARAQRDRADTMVRKLVDWEAANDRELVVTEEGFRVDVGG-------- 927 Query 920 ARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHAQLAMYQLAVAEG-LVRAG 978 I + GR DRLERD GR V+VDIKTGK DD +H QL +YQ+AV +G + G Sbjct 928 ---IEITGRVDRLERDDQGRAVVVDIKTGKN--KADDLARHPQLGVYQMAVLKGAFAKLG 982 Query 979 -DEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWR-NLVRQLAAATAGPQFIARRNDG 1036 EPGGA LV VG+ E+ Q PL+ W LVR++A G +F A RN G Sbjct 983 LTEPGGAALVQVGEK-IQRAREQPQPPLSEDPDPGWAGTLVREVATGMGGSRFTATRNKG 1041 Query 1037 CTHCPLRPGCPAHVRG 1052 C C +R CP G Sbjct 1042 CRSCAVRACCPVQDEG 1057 >gi|330469985|ref|YP_004407728.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] gi|328812956|gb|AEB47128.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] Length=1190 Score = 557 bits (1435), Expect = 5e-156, Method: Compositional matrix adjust. Identities = 432/1115 (39%), Positives = 579/1115 (52%), Gaps = 85/1115 (7%) Query 5 WGVEAG-AALAPGLRGPVLVLGGPGTGKSTLLVEAAVAHIGAGTDPESVLLLTGSGRMGM 63 W +AG A + GP+LVLGGPGTGK++ LVEA + + G DPE +L+LT S R Sbjct 78 WVADAGQAEVVAHTDGPMLVLGGPGTGKTSTLVEAVASRVAEGVDPERILVLTFSRRGAA 137 Query 64 RARSALTTALLRSRTNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQD 123 R + +R + +REP+VRT +YA+ +LR+AA G+ PRLLT EQD Sbjct 138 DLRHRI-----EARIAADGQRVLREPLVRTFPAYAFGLLRRAAAERGEPSPRLLTGPEQD 192 Query 124 AIIRELLAGDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGR 183 IIRELL E+ WP LRPAL T FA +LR+LL R AERG+ P+EL +LG Sbjct 193 LIIRELLDVVGEESGDDPVGWPEDLRPALRTRAFAAQLRDLLMRAAERGVGPVELARLGE 252 Query 184 RRGRPEWIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFAVDPELLA 243 + GR +W AA +F + Y V+ LR + A AELV AA DPELLA Sbjct 253 KLGRADWPAAARFLREYVAVLALRDVANRG-----SVAYDPAELVRAATGMLRDDPELLA 307 Query 244 AERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPTGL--LA 301 ER R+ + VD+ DP L+ +A G + DP+ + + FRG +PTG+ Sbjct 308 VERRRLAYVYVDELADTDPAQRDLLETVAGGGLTLVAFADPDSSTYAFRGADPTGVTTFP 367 Query 302 DDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGT-GTEVGSVTVR 360 A GAP V LT S+RC + A +ARRL G + RR+ GT GS+ + Sbjct 368 HRFRTASGAPAAQVLLTTSYRCGERLLAASARLARRLRGPAAHRRMRPVPGTPPGSMEIH 427 Query 361 LAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAV-RLPRALAAAGVPVAPPAV 419 SA +EAA +A ALR AHL+ G+PW++MAV+VRS R + L RAL AAGVP Sbjct 428 TFRSATSEAAWLAHALREAHLLGGLPWARMAVLVRSTGRQLPTLRRALHAAGVPTVVHGE 487 Query 420 GGPLSAEPAVRALLTVLEAT--ADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQR-ARP 476 PL +PAV LL +L D LD + A+ LL P+GG DP++ R+LR+ L+ A Sbjct 488 DLPLHLQPAVAPLLLLLRCALEPDRLDEEAAVALLHSPLGGADPLAERRLRQGLRALALA 547 Query 477 GQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAA 536 R G+L+VE L A +G R + V A + + G LWA Sbjct 548 AGDRRPSGELIVEALRDPAELAGVERRWAEPAQTVAGLLAVARETAARPGATAEDVLWAV 607 Query 537 WQRSGLQRRWLAASEHGGAAAVQ-----------ATRDLETVTALFDITDHYVSRTSGAS 585 W+ SGL W AA G + A + A RDL+ V LFD + R GA Sbjct 608 WRASGLAELWSAALTRGPSVAGEGDLARRRRAEAADRDLDAVMVLFDAAARFTDRLPGAR 667 Query 586 LRGLVEHVTALQLPVVRPEPAAPT-EQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPR 644 ++HV +LP P A + V +L+AHAA G EWDLV +AG+Q+G+WP+ R Sbjct 668 TEVFLDHVLGQELPADTLAPTADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLR 727 Query 645 GGVLGTQRLLDEL----DGVTKDASM---RAPLLAEERRLLVTAMGRARRRLLVTAVDSD 697 G +LG++RL+D L DG A++ + LL EERRL A+ RARRRLLV+AV S Sbjct 728 GSLLGSERLVDVLAGRADGAGTVATLVGQTSALLDEERRLFHVAVTRARRRLLVSAVASA 787 Query 698 AGGGGHEAVLPSAFFFEI---------AQWADGDGEPVA--------------------- 727 + GG PS F +E+ A A GD EP+ Sbjct 788 SVGGDDHDEQPSRFLYELGPGDTPTDEAPTASGDPEPLPAGIETSGTEPPGSETSTSEAG 847 Query 728 ---MQPVS-APRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPS 783 PVS PR L+ A+V LR + PA + A R AA +LARL AGV GA P Sbjct 848 GSRTLPVSRPPRALTLPALVAELRTALVDPAAPL--ARRQAAAAELARLGAAGVSGAHPD 905 Query 784 EWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLH 843 +W GL P+S PL D + V +TPS +++ C LRWL ERHGG+ VG+++H Sbjct 906 DWWGLRPLSDDRPLVDEGEPVRVTPSGMESALRCSLRWLLERHGGSTPASAAQGVGNLVH 965 Query 844 --ALFAEPGRSE-SQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQWRAQSRSEL 900 A+ AE R++ S LL + + + A+W E AR AM+ ++W A + L Sbjct 966 AAAMLAEDARADRSALLEYVAARFDAIELAARWMVGPERARAEAMVDKLLRWLAANPRRL 1025 Query 901 TEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGK-TPVSKDDAQQ 959 + +E + L+D R + L GR DRLE D GRLV++D+KTGK T V++ + + Sbjct 1026 --LAIEHEFAVRLDDPH---RPVDLVGRVDRLEVDEDGRLVVIDLKTGKSTTVTEREVVE 1080 Query 960 HAQLAMYQLAVAEG-LVRAGDEPGGARLVYVGKSGAAGVAERKQDPLTPAARDEWRN-LV 1017 H QL YQ AV G GDE GGA LV +G +GA E+ Q P T W LV Sbjct 1081 HPQLGAYQAAVEAGAFAEFGDESGGAALVQLG-TGARDAREQSQPPATDGPEAGWATALV 1139 Query 1018 RQLAAATAGPQFIARRNDGCTHCPLRPGCPAHVRG 1052 R+ A A F A N C CP+R CP +G Sbjct 1140 RRTADTMAASTFAAVANSKCRVCPVRTSCPVSGQG 1174 Lambda K H 0.319 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2656565677640 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40