BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3209

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842796|ref|NP_337833.1|  hypothetical protein MT3305 [Mycoba...   355    2e-96
gi|15610345|ref|NP_217725.1|  hypothetical protein Rv3209 [Mycoba...   353    5e-96
gi|339633217|ref|YP_004724859.1|  hypothetical protein MAF_32180 ...   352    2e-95
gi|289444782|ref|ZP_06434526.1|  threonine and proline rich prote...   259    1e-67
gi|167968327|ref|ZP_02550604.1|  conserved threonine and proline ...   237    6e-61
gi|289575926|ref|ZP_06456153.1|  conserved hypothetical threonine...   235    2e-60
gi|240172124|ref|ZP_04750783.1|  putative threonine and proline r...   230    9e-59
gi|183981371|ref|YP_001849662.1|  putative threonine and proline ...   229    2e-58
gi|254552309|ref|ZP_05142756.1|  hypothetical protein Mtube_17963...   196    1e-48
gi|118618013|ref|YP_906345.1|  putative threonine and proline ric...   186    1e-45
gi|41409408|ref|NP_962244.1|  hypothetical protein MAP3310 [Mycob...   184    4e-45
gi|118464384|ref|YP_883305.1|  hypothetical protein MAV_4157 [Myc...   182    2e-44
gi|336459522|gb|EGO38459.1|  Mycobacterium membrane protein [Myco...   179    1e-43
gi|15827356|ref|NP_301619.1|  hypothetical protein ML0813 [Mycoba...   179    1e-43
gi|342861167|ref|ZP_08717816.1|  hypothetical protein MCOL_19887 ...   179    2e-43
gi|296169015|ref|ZP_06850680.1|  MmpS3 protein [Mycobacterium par...   178    3e-43
gi|254821956|ref|ZP_05226957.1|  hypothetical protein MintA_18632...   133    1e-29
gi|108798366|ref|YP_638563.1|  hypothetical protein Mmcs_1395 [My...   113    1e-23
gi|118470889|ref|YP_886299.1|  MmpS3 protein [Mycobacterium smegm...   113    1e-23
gi|126434050|ref|YP_001069741.1|  hypothetical protein Mjls_1449 ...   113    2e-23
gi|145225252|ref|YP_001135930.1|  hypothetical protein Mflv_4674 ...   107    7e-22
gi|315445549|ref|YP_004078428.1|  hypothetical protein Mspyr1_400...   107    7e-22
gi|120402792|ref|YP_952621.1|  hypothetical protein Mvan_1793 [My...   103    8e-21
gi|169630610|ref|YP_001704259.1|  hypothetical protein MAB_3529 [...  74.3    7e-12
gi|145223538|ref|YP_001134216.1|  hypothetical protein Mflv_2951 ...  63.5    1e-08
gi|315443884|ref|YP_004076763.1|  hypothetical protein Mspyr1_228...  63.5    1e-08
gi|296166068|ref|ZP_06848515.1|  conserved hypothetical protein [...  63.2    2e-08
gi|120404533|ref|YP_954362.1|  putative membrane protein MmpS3 [M...  62.8    2e-08
gi|118618840|ref|YP_907172.1|  membrane protein MmpS3 [Mycobacter...  62.0    4e-08
gi|183983233|ref|YP_001851524.1|  membrane protein MmpS3 [Mycobac...  62.0    4e-08
gi|336461922|gb|EGO40775.1|  Mycobacterium membrane protein [Myco...  62.0    4e-08
gi|108800262|ref|YP_640459.1|  hypothetical protein Mmcs_3296 [My...  60.5    1e-07
gi|342859909|ref|ZP_08716562.1|  membrane protein MmpS3 [Mycobact...  60.1    1e-07
gi|240168259|ref|ZP_04746918.1|  membrane protein MmpS3 [Mycobact...  60.1    2e-07
gi|294993583|ref|ZP_06799274.1|  hypothetical protein Mtub2_03509...  59.7    2e-07
gi|254822830|ref|ZP_05227831.1|  membrane protein MmpS3 [Mycobact...  59.7    2e-07
gi|41408036|ref|NP_960872.1|  MmpS3 [Mycobacterium avium subsp. p...  59.7    2e-07
gi|289762360|ref|ZP_06521738.1|  membrane protein mmpS3 [Mycobact...  59.3    2e-07
gi|15609335|ref|NP_216714.1|  membrane protein [Mycobacterium tub...  59.3    2e-07
gi|308370942|ref|ZP_07423296.2|  membrane protein mmpS3 [Mycobact...  58.2    6e-07
gi|333990344|ref|YP_004522958.1|  hypothetical protein JDM601_170...  57.4    9e-07
gi|15827400|ref|NP_301663.1|  hypothetical protein ML0877 [Mycoba...  57.0    1e-06
gi|118472224|ref|YP_888542.1|  MmpS3 protein [Mycobacterium smegm...  57.0    1e-06
gi|308375809|ref|ZP_07445176.2|  membrane protein mmpS3 [Mycobact...  56.6    2e-06
gi|169629050|ref|YP_001702699.1|  MmpS family protein [Mycobacter...  55.8    3e-06
gi|254821578|ref|ZP_05226579.1|  hypothetical protein MintA_16712...  55.1    4e-06
gi|333990038|ref|YP_004522652.1|  proline rich membrane protein [...  53.9    1e-05
gi|169628629|ref|YP_001702278.1|  hypothetical protein MAB_1539c ...  53.1    2e-05
gi|108800602|ref|YP_640799.1|  hypothetical protein Mmcs_3636 [My...  52.0    4e-05
gi|118469241|ref|YP_888980.1|  hypothetical protein MSMEG_4720 [M...  50.4    1e-04


>gi|15842796|ref|NP_337833.1| hypothetical protein MT3305 [Mycobacterium tuberculosis CDC1551]
 gi|254233821|ref|ZP_04927146.1| conserved hypothetical threonine and proline rich protein [Mycobacterium 
tuberculosis C]
 gi|13883123|gb|AAK47647.1| hypothetical protein MT3305 [Mycobacterium tuberculosis CDC1551]
 gi|124599350|gb|EAY58454.1| conserved hypothetical threonine and proline rich protein [Mycobacterium 
tuberculosis C]
Length=187

 Score =  355 bits (910),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 186/186 (100%), Positives = 186/186 (100%), Gaps = 0/186 (0%)

Query  1    VALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  60
            VALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP
Sbjct  2    VALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  61

Query  61   ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYT  120
            ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYT
Sbjct  62   ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYT  121

Query  121  DARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAI  180
            DARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAI
Sbjct  122  DARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAI  181

Query  181  IATCTR  186
            IATCTR
Sbjct  182  IATCTR  187


>gi|15610345|ref|NP_217725.1| hypothetical protein Rv3209 [Mycobacterium tuberculosis H37Rv]
 gi|31794387|ref|NP_856880.1| hypothetical protein Mb3235 [Mycobacterium bovis AF2122/97]
 gi|121639096|ref|YP_979320.1| threonin and proline rich protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 37 more sequence titles
 gi|148663070|ref|YP_001284593.1| hypothetical protein MRA_3248 [Mycobacterium tuberculosis H37Ra]
 gi|148824407|ref|YP_001289162.1| threonine and proline rich protein [Mycobacterium tuberculosis 
F11]
 gi|224991588|ref|YP_002646277.1| hypothetical threonine and proline rich protein [Mycobacterium 
bovis BCG str. Tokyo 172]
 gi|253800248|ref|YP_003033249.1| hypothetical protein TBMG_03254 [Mycobacterium tuberculosis KZN 
1435]
 gi|254365834|ref|ZP_04981879.1| conserved threonine and proline rich protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|289555484|ref|ZP_06444694.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
KZN 605]
 gi|289571433|ref|ZP_06451660.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
T17]
 gi|289747024|ref|ZP_06506402.1| conserved threonine and proline rich protein [Mycobacterium tuberculosis 
02_1987]
 gi|289751899|ref|ZP_06511277.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
T92]
 gi|289755329|ref|ZP_06514707.1| conserved threonine and proline rich protein [Mycobacterium tuberculosis 
EAS054]
 gi|289759345|ref|ZP_06518723.1| threonine/proline rich protein [Mycobacterium tuberculosis T85]
 gi|289763394|ref|ZP_06522772.1| conserved hypothetical threonine and proline rich protein [Mycobacterium 
tuberculosis GM 1503]
 gi|298526687|ref|ZP_07014096.1| conserved hypothetical threonine and proline rich protein [Mycobacterium 
tuberculosis 94_M4241A]
 gi|306799167|ref|ZP_07437469.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu006]
 gi|340628187|ref|YP_004746639.1| hypothetical protein MCAN_32261 [Mycobacterium canettii CIPT 
140010059]
 gi|2072676|emb|CAB08307.1| CONSERVED HYPOTHETICAL THREONIN AND PROLINE RICH PROTEIN [Mycobacterium 
tuberculosis H37Rv]
 gi|31619983|emb|CAD95327.1| CONSERVED HYPOTHETICAL THREONIN AND PROLINE RICH PROTEIN [Mycobacterium 
bovis AF2122/97]
 gi|121494744|emb|CAL73225.1| Conserved hypothetical threonin and proline rich protein [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 gi|134151347|gb|EBA43392.1| conserved threonine and proline rich protein [Mycobacterium tuberculosis 
str. Haarlem]
 gi|148507222|gb|ABQ75031.1| hypothetical protein MRA_3248 [Mycobacterium tuberculosis H37Ra]
 gi|148722934|gb|ABR07559.1| conserved threonine and proline rich protein [Mycobacterium tuberculosis 
F11]
 gi|224774703|dbj|BAH27509.1| hypothetical threonine and proline rich protein [Mycobacterium 
bovis BCG str. Tokyo 172]
 gi|253321750|gb|ACT26353.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
KZN 1435]
 gi|289440116|gb|EFD22609.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
KZN 605]
 gi|289545187|gb|EFD48835.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
T17]
 gi|289687552|gb|EFD55040.1| conserved threonine and proline rich protein [Mycobacterium tuberculosis 
02_1987]
 gi|289692486|gb|EFD59915.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
T92]
 gi|289695916|gb|EFD63345.1| conserved threonine and proline rich protein [Mycobacterium tuberculosis 
EAS054]
 gi|289710900|gb|EFD74916.1| conserved hypothetical threonine and proline rich protein [Mycobacterium 
tuberculosis GM 1503]
 gi|289714909|gb|EFD78921.1| threonine/proline rich protein [Mycobacterium tuberculosis T85]
 gi|298496481|gb|EFI31775.1| conserved hypothetical threonine and proline rich protein [Mycobacterium 
tuberculosis 94_M4241A]
 gi|308340588|gb|EFP29439.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu006]
 gi|326902562|gb|EGE49495.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
W-148]
 gi|328459982|gb|AEB05405.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
KZN 4207]
 gi|340006377|emb|CCC45557.1| conserved hypothetical threonin and proline rich protein [Mycobacterium 
canettii CIPT 140010059]
 gi|341603135|emb|CCC65813.1| conserved hypothetical threonin and proline rich protein [Mycobacterium 
bovis BCG str. Moreau RDJ]
 gi|344221042|gb|AEN01673.1| hypothetical protein MTCTRI2_3273 [Mycobacterium tuberculosis 
CTRI-2]
Length=186

 Score =  353 bits (907),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 185/186 (99%), Positives = 186/186 (100%), Gaps = 0/186 (0%)

Query  1    VALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  60
            +ALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP
Sbjct  1    MALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  60

Query  61   ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYT  120
            ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYT
Sbjct  61   ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYT  120

Query  121  DARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAI  180
            DARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAI
Sbjct  121  DARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAI  180

Query  181  IATCTR  186
            IATCTR
Sbjct  181  IATCTR  186


>gi|339633217|ref|YP_004724859.1| hypothetical protein MAF_32180 [Mycobacterium africanum GM041182]
 gi|339332573|emb|CCC28288.1| conserved hypothetical threonin and proline rich protein [Mycobacterium 
africanum GM041182]
Length=186

 Score =  352 bits (902),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 184/186 (99%), Positives = 185/186 (99%), Gaps = 0/186 (0%)

Query  1    VALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  60
            +ALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP
Sbjct  1    MALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  60

Query  61   ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYT  120
            ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPP APLNPRTVVYRVTGTKQLFDLVNVVYT
Sbjct  61   ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPQAPLNPRTVVYRVTGTKQLFDLVNVVYT  120

Query  121  DARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAI  180
            DARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAI
Sbjct  121  DARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAI  180

Query  181  IATCTR  186
            IATCTR
Sbjct  181  IATCTR  186


>gi|289444782|ref|ZP_06434526.1| threonine and proline rich protein [Mycobacterium tuberculosis 
T46]
 gi|308232379|ref|ZP_07415871.2| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu001]
 gi|308370191|ref|ZP_07666886.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu002]
 20 more sequence titles
 gi|308371276|ref|ZP_07667125.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu003]
 gi|308372465|ref|ZP_07667384.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu004]
 gi|308373673|ref|ZP_07667625.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu005]
 gi|308376029|ref|ZP_07445866.2| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu007]
 gi|308377265|ref|ZP_07441680.2| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu008]
 gi|308378232|ref|ZP_07668696.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu009]
 gi|308379449|ref|ZP_07486314.2| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu010]
 gi|308380611|ref|ZP_07490532.2| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu011]
 gi|289417701|gb|EFD14941.1| threonine and proline rich protein [Mycobacterium tuberculosis 
T46]
 gi|308214082|gb|EFO73481.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu001]
 gi|308325012|gb|EFP13863.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu002]
 gi|308329232|gb|EFP18083.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu003]
 gi|308333064|gb|EFP21915.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu004]
 gi|308336750|gb|EFP25601.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu005]
 gi|308344525|gb|EFP33376.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu007]
 gi|308348321|gb|EFP37172.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu008]
 gi|308353155|gb|EFP42006.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu009]
 gi|308356897|gb|EFP45748.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu010]
 gi|308360897|gb|EFP49748.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
SUMu011]
 gi|323718076|gb|EGB27258.1| proline and threonine rich protein [Mycobacterium tuberculosis 
CDC1551A]
Length=133

 Score =  259 bits (663),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 132/133 (99%), Positives = 133/133 (100%), Gaps = 0/133 (0%)

Query  54   LRPQLPPETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFD  113
            +RPQLPPETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFD
Sbjct  1    MRPQLPPETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFD  60

Query  114  LVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVV  173
            LVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVV
Sbjct  61   LVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVV  120

Query  174  ASTNNAIIATCTR  186
            ASTNNAIIATCTR
Sbjct  121  ASTNNAIIATCTR  133


>gi|167968327|ref|ZP_02550604.1| conserved threonine and proline rich protein [Mycobacterium tuberculosis 
H37Ra]
 gi|289448894|ref|ZP_06438638.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
CPHL_A]
 gi|297732855|ref|ZP_06961973.1| hypothetical protein MtubKR_17277 [Mycobacterium tuberculosis 
KZN R506]
 gi|313660188|ref|ZP_07817068.1| hypothetical protein MtubKV_17282 [Mycobacterium tuberculosis 
KZN V2475]
 gi|289421852|gb|EFD19053.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis 
CPHL_A]
Length=121

 Score =  237 bits (604),  Expect = 6e-61, Method: Compositional matrix adjust.
 Identities = 120/121 (99%), Positives = 121/121 (100%), Gaps = 0/121 (0%)

Query  66   VAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGF  125
            +APPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGF
Sbjct  1    MAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGF  60

Query  126  PVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCT  185
            PVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCT
Sbjct  61   PVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCT  120

Query  186  R  186
            R
Sbjct  121  R  121


>gi|289575926|ref|ZP_06456153.1| conserved hypothetical threonine and proline rich protein [Mycobacterium 
tuberculosis K85]
 gi|289540357|gb|EFD44935.1| conserved hypothetical threonine and proline rich protein [Mycobacterium 
tuberculosis K85]
Length=121

 Score =  235 bits (600),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 119/121 (99%), Positives = 120/121 (99%), Gaps = 0/121 (0%)

Query  66   VAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGF  125
            +APPGTGPTTVPTRTPTAAPPQTAVPP APLNPRTVVYRVTGTKQLFDLVNVVYTDARGF
Sbjct  1    MAPPGTGPTTVPTRTPTAAPPQTAVPPQAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGF  60

Query  126  PVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCT  185
            PVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCT
Sbjct  61   PVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCT  120

Query  186  R  186
            R
Sbjct  121  R  121


>gi|240172124|ref|ZP_04750783.1| putative threonine and proline rich protein [Mycobacterium kansasii 
ATCC 12478]
Length=283

 Score =  230 bits (586),  Expect = 9e-59, Method: Compositional matrix adjust.
 Identities = 141/196 (72%), Positives = 153/196 (79%), Gaps = 14/196 (7%)

Query  1    VALGAVATAVIINSGDSTSTKAIVGAPA----PRTVISTSPRPTAPTSTSPHPSPS----  52
            VALGAVATAVIINSGDS +TKA VGAP     PRTV+ST+PR TAP STSP P PS    
Sbjct  92   VALGAVATAVIINSGDSATTKATVGAPVGAPMPRTVVSTTPRTTAPPSTSPSPPPSTSAR  151

Query  53   --TLRPQLPPETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQ  110
              T  PQL PETVTTV    T P+  PTR PTA PPQ   PP A L+PR VVY VTGTKQ
Sbjct  152  PSTSAPQLAPETVTTV----TIPSAAPTRIPTAVPPQPGTPPSAALSPRAVVYSVTGTKQ  207

Query  111  LFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQ  170
            L D+VNVVYTD RGFPVT+FNV+LPWTKMVVLNPGVQTESVVATS+YSRLNC+IVN   Q
Sbjct  208  LLDIVNVVYTDERGFPVTEFNVALPWTKMVVLNPGVQTESVVATSIYSRLNCAIVNAQGQ  267

Query  171  TVVASTNNAIIATCTR  186
             VVAST N+I+ATCTR
Sbjct  268  PVVASTTNSILATCTR  283


>gi|183981371|ref|YP_001849662.1| putative threonine and proline rich protein [Mycobacterium marinum 
M]
 gi|183174697|gb|ACC39807.1| conserved hypothetical threonine and proline rich protein [Mycobacterium 
marinum M]
Length=326

 Score =  229 bits (584),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 129/195 (67%), Positives = 143/195 (74%), Gaps = 17/195 (8%)

Query  6    VATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPT---------STSPHPSPSTLRP  56
            + TA++INSGDS +TK  VG P PRTVIST+ R TAP+         STS  P P T   
Sbjct  135  ITTALVINSGDSATTKGKVGVPTPRTVISTTARTTAPSAPPRTAPYPSTSTRPGPGTSAS  194

Query  57   QLPPETVTTVAPPGTGPTTVPTRTPTAAP-----PQTAVPPPAPLNPRTVVYRVTGTKQL  111
            QLPPET TTV PPG  PT  PT     AP     P  A PP A LNPRTV+YRVTGTKQL
Sbjct  195  QLPPETFTTVTPPGAAPTWPPT---AVAPLPGMQPLPAEPPSAALNPRTVIYRVTGTKQL  251

Query  112  FDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQT  171
             D+VN+VYTDARGFPVT+FNV+LPWTKMVVLNPGVQTESVVATS+Y RLNC+IVN   Q 
Sbjct  252  LDMVNIVYTDARGFPVTEFNVALPWTKMVVLNPGVQTESVVATSIYGRLNCAIVNAQGQL  311

Query  172  VVASTNNAIIATCTR  186
            VVASTN +IIATCTR
Sbjct  312  VVASTNTSIIATCTR  326


>gi|254552309|ref|ZP_05142756.1| hypothetical protein Mtube_17963 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=97

 Score =  196 bits (498),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 96/97 (99%), Positives = 97/97 (100%), Gaps = 0/97 (0%)

Query  90   VPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTE  149
            +PPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTE
Sbjct  1    MPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTE  60

Query  150  SVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCTR  186
            SVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCTR
Sbjct  61   SVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCTR  97


>gi|118618013|ref|YP_906345.1| putative threonine and proline rich protein [Mycobacterium ulcerans 
Agy99]
 gi|118570123|gb|ABL04874.1| conserved hypothetical threonine and proline rich protein [Mycobacterium 
ulcerans Agy99]
Length=184

 Score =  186 bits (473),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 97/134 (73%), Positives = 105/134 (79%), Gaps = 2/134 (1%)

Query  55   RPQLPPETVTTVAPPGTGPTTVPTRTP--TAAPPQTAVPPPAPLNPRTVVYRVTGTKQLF  112
            RP  PPET TTV PPG  PT  PT         P  A PP A LNPRTV+YRVTGTKQL 
Sbjct  51   RPNSPPETFTTVTPPGAAPTWPPTAVAPLQGMQPLPAEPPSAALNPRTVIYRVTGTKQLL  110

Query  113  DLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTV  172
            D+VN+VYTDARGFPVT+FNV+LPWTKMVVLNPGVQTESVVATS+Y RLNC+IVN   Q V
Sbjct  111  DMVNIVYTDARGFPVTEFNVALPWTKMVVLNPGVQTESVVATSIYGRLNCAIVNAQGQLV  170

Query  173  VASTNNAIIATCTR  186
            VASTN +IIATCTR
Sbjct  171  VASTNTSIIATCTR  184


>gi|41409408|ref|NP_962244.1| hypothetical protein MAP3310 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398239|gb|AAS05860.1| hypothetical protein MAP_3310 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=191

 Score =  184 bits (468),  Expect = 4e-45, Method: Compositional matrix adjust.
 Identities = 110/193 (57%), Positives = 128/193 (67%), Gaps = 10/193 (5%)

Query  1    VALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  60
            VALGA+ATAVIINSGDS STKA VGA AP +V S    P    ++ P  +  +    LP 
Sbjct  2    VALGAIATAVIINSGDSASTKATVGASAPHSVTSA---PATTKASVPPSASPSPSRPLPA  58

Query  61   ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAP-------LNPRTVVYRVTGTKQLFD  113
            ET TTV  P   P+  P+ TP  AP QT    P         ++PRTVVY V+G+KQL D
Sbjct  59   ETFTTVTSPSAAPSVAPSLTPGVAPAQTPTAAPPLAAAPTVTVDPRTVVYSVSGSKQLLD  118

Query  114  LVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVV  173
            LVNVVYTDA G P T+FNVSLPW+K+VVL PGVQTESVVATS Y RL+CSI N   Q VV
Sbjct  119  LVNVVYTDAHGVPQTEFNVSLPWSKVVVLEPGVQTESVVATSFYGRLSCSIFNAAGQRVV  178

Query  174  ASTNNAIIATCTR  186
            AS N + +ATC R
Sbjct  179  ASANASNMATCAR  191


>gi|118464384|ref|YP_883305.1| hypothetical protein MAV_4157 [Mycobacterium avium 104]
 gi|118165671|gb|ABK66568.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=245

 Score =  182 bits (461),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 110/193 (57%), Positives = 128/193 (67%), Gaps = 10/193 (5%)

Query  1    VALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  60
            VALGA+ATAVIINSGDS STKA VGA AP +V S    P    ++ P  +  +    LP 
Sbjct  56   VALGAIATAVIINSGDSASTKATVGASAPHSVTSA---PATTKASVPPSASPSPSRPLPA  112

Query  61   ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAP-------LNPRTVVYRVTGTKQLFD  113
            ET TTV  P   P+  P+ TP  AP QT    P         ++PRTVVY V+G+KQL D
Sbjct  113  ETFTTVTSPSAAPSVAPSLTPGVAPAQTPTAAPPLAAAPTVTVDPRTVVYSVSGSKQLLD  172

Query  114  LVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVV  173
            LVNVVYTDA G P T+FNVSLPW+K+VVL PGVQTESVVATS Y RL+CSI N   Q VV
Sbjct  173  LVNVVYTDAHGVPQTEFNVSLPWSKVVVLEPGVQTESVVATSFYGRLSCSIFNAAGQRVV  232

Query  174  ASTNNAIIATCTR  186
            AS N + +ATC R
Sbjct  233  ASANASNMATCAR  245


>gi|336459522|gb|EGO38459.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=251

 Score =  179 bits (455),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 109/193 (57%), Positives = 127/193 (66%), Gaps = 10/193 (5%)

Query  1    VALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  60
            VALGA+ATAVIINSGDS STKA VGA AP +V S    P    ++ P  +  +    LP 
Sbjct  62   VALGAIATAVIINSGDSASTKATVGASAPHSVTSA---PATTKASVPPSASPSPSRPLPA  118

Query  61   ETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAP-------LNPRTVVYRVTGTKQLFD  113
            ET TTV  P   P+  P+ T   AP QT    P         ++PRTVVY V+G+KQL D
Sbjct  119  ETFTTVTSPSAAPSVAPSLTSGVAPAQTPTAAPPLAAAPTVTVDPRTVVYSVSGSKQLLD  178

Query  114  LVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVV  173
            LVNVVYTDA G P T+FNVSLPW+K+VVL PGVQTESVVATS Y RL+CSI N   Q VV
Sbjct  179  LVNVVYTDAHGVPQTEFNVSLPWSKVVVLEPGVQTESVVATSFYGRLSCSIFNAAGQRVV  238

Query  174  ASTNNAIIATCTR  186
            AS N + +ATC R
Sbjct  239  ASANASNMATCAR  251


>gi|15827356|ref|NP_301619.1| hypothetical protein ML0813 [Mycobacterium leprae TN]
 gi|221229834|ref|YP_002503250.1| hypothetical protein MLBr_00813 [Mycobacterium leprae Br4923]
 gi|13092905|emb|CAC30323.1| putative membrane protein [Mycobacterium leprae]
 gi|219932941|emb|CAR70908.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=195

 Score =  179 bits (455),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 108/185 (59%), Positives = 129/185 (70%), Gaps = 26/185 (14%)

Query  2    ALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPPE  61
            AL A+ATAVIINSGD+ +TKAIVGAP PR V++T   P+ P   +P  +P  L   L P+
Sbjct  37   ALCAIATAVIINSGDNATTKAIVGAPTPRPVLTT---PSIPLPATPSSTPPLL---LLPD  90

Query  62   TVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTD  121
            T T          T+P +   AAPP         L+PRTVVY VTG K+L DLV VVYTD
Sbjct  91   TATA---------TIPHK---AAPPA--------LHPRTVVYNVTGMKELLDLVTVVYTD  130

Query  122  ARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAII  181
            ARG+P T+FNV LPWTK VVLN GV+T+SVVATS +S+L+CSIVN   Q VVASTNNA+I
Sbjct  131  ARGYPKTEFNVVLPWTKAVVLNLGVKTQSVVATSFHSQLHCSIVNAEGQPVVASTNNAVI  190

Query  182  ATCTR  186
            ATCTR
Sbjct  191  ATCTR  195


>gi|342861167|ref|ZP_08717816.1| hypothetical protein MCOL_19887 [Mycobacterium colombiense CECT 
3035]
 gi|342131611|gb|EGT84881.1| hypothetical protein MCOL_19887 [Mycobacterium colombiense CECT 
3035]
Length=248

 Score =  179 bits (454),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 118/187 (64%), Positives = 130/187 (70%), Gaps = 5/187 (2%)

Query  1    VALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  60
            VALGA+ATAVIINSGDS STKA +GAPAP+ V S      A T  S  P  ST   QLP 
Sbjct  66   VALGAIATAVIINSGDSASTKATLGAPAPQPVTSAP----ATTKASAPPKASTGPSQLPA  121

Query  61   ETVTTV-APPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVY  119
            ET TTV  P            PT APP  A PP A LNPRTV+Y V GTKQL DLVNVVY
Sbjct  122  ETFTTVTTPSAAPVAPPAVAAPTVAPPLAAAPPTAALNPRTVLYSVNGTKQLLDLVNVVY  181

Query  120  TDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNA  179
            TDARG P T+FNVSLPW+K+VVLNPGVQTESVVATS Y +L+CSI N   Q V+ASTN +
Sbjct  182  TDARGVPQTEFNVSLPWSKVVVLNPGVQTESVVATSFYGQLSCSIFNAAGQRVIASTNVS  241

Query  180  IIATCTR  186
             +ATC R
Sbjct  242  NMATCAR  248


>gi|296169015|ref|ZP_06850680.1| MmpS3 protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896312|gb|EFG75969.1| MmpS3 protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=239

 Score =  178 bits (452),  Expect = 3e-43, Method: Compositional matrix adjust.
 Identities = 113/188 (61%), Positives = 129/188 (69%), Gaps = 5/188 (2%)

Query  1    VALGAVATAVIINSGDSTSTKAIVG-APAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLP  59
            VA+GA+ATAVIINSGDS STKA +G AP P T    + + +AP S  P PS   +  QLP
Sbjct  55   VAVGAIATAVIINSGDSASTKATIGPAPQPVTSAPATTKASAPPSAQPSPS---VTQQLP  111

Query  60   PETVTTVAPPGTGPTTVPT-RTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVV  118
            PETVTTV  P   P+  PT     A P     PP A LNPRTVVY VTG+KQL DLVN+V
Sbjct  112  PETVTTVTTPSAAPSLAPTGTPTAAPPLTLTPPPAAALNPRTVVYSVTGSKQLLDLVNIV  171

Query  119  YTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNN  178
            YTD +G   T+FNVSLPWTK V+LNPG+Q  SVVATS Y RLNCSIVN   Q V A  NN
Sbjct  172  YTDGQGRSQTEFNVSLPWTKAVILNPGIQNPSVVATSFYGRLNCSIVNAAGQLVAAQANN  231

Query  179  AIIATCTR  186
            A +A+CTR
Sbjct  232  ASLASCTR  239


>gi|254821956|ref|ZP_05226957.1| hypothetical protein MintA_18632 [Mycobacterium intracellulare 
ATCC 13950]
Length=106

 Score =  133 bits (335),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 62/90 (69%), Positives = 76/90 (85%), Gaps = 0/90 (0%)

Query  97   NPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSL  156
            NPRTVVY V+GTKQL DLVNVVYTDARG P ++FNVSLPW+K+VVLNPGVQTESVVATS 
Sbjct  17   NPRTVVYSVSGTKQLLDLVNVVYTDARGVPQSEFNVSLPWSKVVVLNPGVQTESVVATSF  76

Query  157  YSRLNCSIVNTGAQTVVASTNNAIIATCTR  186
            Y +L+CS+ N   Q ++AS + + +ATC+R
Sbjct  77   YGQLSCSVFNAAGQRIMASGSPSNMATCSR  106


>gi|108798366|ref|YP_638563.1| hypothetical protein Mmcs_1395 [Mycobacterium sp. MCS]
 gi|119867463|ref|YP_937415.1| hypothetical protein Mkms_1413 [Mycobacterium sp. KMS]
 gi|108768785|gb|ABG07507.1| hypothetical protein Mmcs_1395 [Mycobacterium sp. MCS]
 gi|119693552|gb|ABL90625.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=282

 Score =  113 bits (283),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 84/184 (46%), Positives = 110/184 (60%), Gaps = 12/184 (6%)

Query  6    VATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRP---QLPPET  62
            + T VI+  GDS S  A VG        S   RP A T+T+PH + + L P    L PET
Sbjct  108  ICTLVILGGGDSGSVSATVG-------TSAQSRPPA-TATAPHDTSAALPPPTASLAPET  159

Query  63   VTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDA  122
            +TTV P    P+   + TP  AP   A PPPA   PR + Y VTG +QL D V V+YTD 
Sbjct  160  ITTVTPTAP-PSPSASATPDPAPSAVAPPPPAAATPRAITYTVTGNRQLIDFVTVIYTDQ  218

Query  123  RGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIA  182
            +G   T+ NVSLPW+K VVL+PGV+ +SV ATS+  +LNC+I +     +V   NN++IA
Sbjct  219  QGALQTEVNVSLPWSKTVVLDPGVELKSVTATSVGGQLNCAITDAAGAALVTQNNNSMIA  278

Query  183  TCTR  186
            TCT+
Sbjct  279  TCTQ  282


>gi|118470889|ref|YP_886299.1| MmpS3 protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172176|gb|ABK73072.1| MmpS3 protein [Mycobacterium smegmatis str. MC2 155]
Length=274

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 85/182 (47%), Positives = 103/182 (57%), Gaps = 7/182 (3%)

Query  6    VATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPST-LRPQLPPETVT  64
            + T VI+  GDS S  A V  P      ++ P  TAP   S  P P   + P L PETVT
Sbjct  99   ICTVVILGGGDSGSVSATVADPTQ----TSQPATTAPQDASSTPRPLPPVAPSLSPETVT  154

Query  65   TVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARG  124
            TV P  T      T  P    P     PP  +NPR V Y VTG +QL DLV +VYTD RG
Sbjct  155  TVTPSPT--APAATAEPAPVAPPAEAAPPPAVNPRAVTYTVTGNRQLIDLVTIVYTDERG  212

Query  125  FPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATC  184
               TD NV+LPWTK VVL+PGV+ +SV ATS+  +LNCSI +     +V   NN +IATC
Sbjct  213  ALQTDINVALPWTKTVVLDPGVELKSVTATSVAGQLNCSITDAAGNVLVNQANNTMIATC  272

Query  185  TR  186
            T+
Sbjct  273  TQ  274


>gi|126434050|ref|YP_001069741.1| hypothetical protein Mjls_1449 [Mycobacterium sp. JLS]
 gi|126233850|gb|ABN97250.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=282

 Score =  113 bits (282),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 84/184 (46%), Positives = 110/184 (60%), Gaps = 12/184 (6%)

Query  6    VATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRP---QLPPET  62
            + T VI+  GDS S  A VG        S   RP A T+T+PH + + L P    L PET
Sbjct  108  ICTLVILGGGDSGSVSATVG-------TSAQSRPPA-TATAPHDTSAALPPPTASLAPET  159

Query  63   VTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDA  122
            +TTV P    P+   + TP  AP   A PPPA   PR + Y VTG +QL D V V+YTD 
Sbjct  160  ITTVTPTAP-PSPSASATPDPAPSAVAPPPPAAATPRAITYTVTGNRQLIDFVTVIYTDQ  218

Query  123  RGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIA  182
            +G   T+ NVSLPW+K VVL+PGV+ +SV ATS+  +LNC+I +     +V   NN++IA
Sbjct  219  QGALQTEVNVSLPWSKTVVLDPGVELKSVTATSVGGQLNCAITDAAGAALVTQNNNSMIA  278

Query  183  TCTR  186
            TCT+
Sbjct  279  TCTQ  282


>gi|145225252|ref|YP_001135930.1| hypothetical protein Mflv_4674 [Mycobacterium gilvum PYR-GCK]
 gi|145217738|gb|ABP47142.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=282

 Score =  107 bits (267),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 79/181 (44%), Positives = 99/181 (55%), Gaps = 6/181 (3%)

Query  6    VATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPPETVTT  65
            +  ++I+  GDS S  A V AP P    S++P P+A  S       S     LP ETVTT
Sbjct  108  ITVSMILGGGDSGSVSATVAAPLP---TSSAPEPSAAPSPRAAAPASP---SLPAETVTT  161

Query  66   VAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGF  125
            V P    P   P       P   A PPPA   P TV YR+TG + L DLV ++YTD +G 
Sbjct  162  VTPTAETPAPAPVAPSPLLPAPQAAPPPAAAAPGTVTYRITGNRALLDLVTIIYTDEQGA  221

Query  126  PVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCT  185
              TD N +LPWTK VVLNPGV   SV ATS+  +LNC+I++     +    NN+II  CT
Sbjct  222  LKTDVNAALPWTKTVVLNPGVTLSSVTATSVSGQLNCAILDANGSLIAVQNNNSIITNCT  281

Query  186  R  186
            R
Sbjct  282  R  282


>gi|315445549|ref|YP_004078428.1| hypothetical protein Mspyr1_40060 [Mycobacterium sp. Spyr1]
 gi|315263852|gb|ADU00594.1| hypothetical protein Mspyr1_40060 [Mycobacterium sp. Spyr1]
Length=282

 Score =  107 bits (267),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 79/181 (44%), Positives = 99/181 (55%), Gaps = 6/181 (3%)

Query  6    VATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPPETVTT  65
            +  ++I+  GDS S  A V AP P    S++P P+A  S       S     LP ETVTT
Sbjct  108  ITVSMILGGGDSGSVSATVAAPLP---TSSAPEPSAAPSPRAAAPASP---SLPAETVTT  161

Query  66   VAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGF  125
            V P    P   P       P   A PPPA   P TV YR+TG + L DLV ++YTD +G 
Sbjct  162  VTPTAETPAPAPVAPSPLLPAPQAAPPPAAAAPGTVTYRITGNRALLDLVTIIYTDEQGA  221

Query  126  PVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTNNAIIATCT  185
              TD N +LPWTK VVLNPGV   SV ATS+  +LNC+I++     +    NN+II  CT
Sbjct  222  LKTDVNAALPWTKTVVLNPGVTLSSVTATSVSGQLNCAILDANGSLIAVQNNNSIITNCT  281

Query  186  R  186
            R
Sbjct  282  R  282


>gi|120402792|ref|YP_952621.1| hypothetical protein Mvan_1793 [Mycobacterium vanbaalenii PYR-1]
 gi|119955610|gb|ABM12615.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=260

 Score =  103 bits (258),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 66/129 (52%), Positives = 80/129 (63%), Gaps = 0/129 (0%)

Query  58   LPPETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLVNV  117
            LP ETVTTV P    PT  PT      P   A PPPA   P TV YR+TG + L DLV V
Sbjct  132  LPAETVTTVTPTAEIPTPAPTTPAPLLPAPQAAPPPASAAPGTVTYRITGNRALLDLVTV  191

Query  118  VYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLYSRLNCSIVNTGAQTVVASTN  177
            +YTDA+G   TD N +LPW+K +VLNPGV   SV ATS+  +LNC+I++     + A  N
Sbjct  192  IYTDAQGALQTDVNAALPWSKTIVLNPGVTLSSVTATSMSGQLNCAILDANGSLIAAQNN  251

Query  178  NAIIATCTR  186
            N+II  CTR
Sbjct  252  NSIITNCTR  260


>gi|169630610|ref|YP_001704259.1| hypothetical protein MAB_3529 [Mycobacterium abscessus ATCC 19977]
 gi|169242577|emb|CAM63605.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=244

 Score = 74.3 bits (181),  Expect = 7e-12, Method: Compositional matrix adjust.
 Identities = 37/92 (41%), Positives = 52/92 (57%), Gaps = 0/92 (0%)

Query  95   PLNPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVAT  154
            P+ P    Y VTG +   DL+ + YTD  G   T    SLPWT +V  +PG+   S+ AT
Sbjct  153  PITPAAFAYYVTGNQTPGDLLTITYTDGNGMTRTVLGASLPWTMIVTPSPGITGGSITAT  212

Query  155  SLYSRLNCSIVNTGAQTVVASTNNAIIATCTR  186
            S  S++NCSI N+  Q +    +N+IIA C +
Sbjct  213  SFASQVNCSITNSENQMLAVQNSNSIIARCAK  244


>gi|145223538|ref|YP_001134216.1| hypothetical protein Mflv_2951 [Mycobacterium gilvum PYR-GCK]
 gi|145216024|gb|ABP45428.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=268

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 39/91 (43%), Positives = 54/91 (60%), Gaps = 6/91 (6%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTE--SVVATS  155
            PR V Y VTGTK   D++ V Y DA G   T  NV +PW+  + + P  Q+E  SV A+S
Sbjct  180  PRQVTYSVTGTKAPGDIITVTYIDASGRSRTQRNVYIPWS--LTVTPISQSEVGSVQASS  237

Query  156  LY--SRLNCSIVNTGAQTVVASTNNAIIATC  184
            L+  S+LNCSI  +  Q + ++T NA   +C
Sbjct  238  LFLVSKLNCSITTSDGQVLSSNTGNAAQTSC  268


>gi|315443884|ref|YP_004076763.1| hypothetical protein Mspyr1_22830 [Mycobacterium sp. Spyr1]
 gi|315262187|gb|ADT98928.1| hypothetical protein Mspyr1_22830 [Mycobacterium sp. Spyr1]
Length=268

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 39/91 (43%), Positives = 54/91 (60%), Gaps = 6/91 (6%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTE--SVVATS  155
            PR V Y VTGTK   D++ V Y DA G   T  NV +PW+  + + P  Q+E  SV A+S
Sbjct  180  PRQVTYSVTGTKAPGDIITVTYIDASGRSRTQRNVYIPWS--LTVTPISQSEVGSVQASS  237

Query  156  LY--SRLNCSIVNTGAQTVVASTNNAIIATC  184
            L+  S+LNCSI  +  Q + ++T NA   +C
Sbjct  238  LFLVSKLNCSITTSDGQVLSSNTGNAAQTSC  268


>gi|296166068|ref|ZP_06848515.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898589|gb|EFG78148.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=96

 Score = 63.2 bits (152),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 39/96 (41%), Positives = 52/96 (55%), Gaps = 2/96 (2%)

Query  91   PPPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTES  150
            P   P  PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         S
Sbjct  1    PTTTPTGPRQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGS  60

Query  151  VVATSLY--SRLNCSIVNTGAQTVVASTNNAIIATC  184
            V A+SL+  SRLNCSI  +    + ++TN+A   +C
Sbjct  61   VEASSLFRVSRLNCSITTSDGTVLSSNTNDAPQTSC  96


>gi|120404533|ref|YP_954362.1| putative membrane protein MmpS3 [Mycobacterium vanbaalenii PYR-1]
 gi|119957351|gb|ABM14356.1| putative conserved membrane protein MmpS3 [Mycobacterium vanbaalenii 
PYR-1]
Length=274

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 39/91 (43%), Positives = 54/91 (60%), Gaps = 6/91 (6%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTE--SVVATS  155
            PR V Y VTGTK   D++ V Y DA G   T  NV +PW+  + + P  Q+E  SV A+S
Sbjct  186  PRQVTYSVTGTKAPGDIITVTYIDASGRSRTQRNVYIPWS--LTVTPISQSEVGSVQASS  243

Query  156  LY--SRLNCSIVNTGAQTVVASTNNAIIATC  184
            L+  SRLNCSI  +    + ++T+NA   +C
Sbjct  244  LFMVSRLNCSITTSDGTVLSSNTSNAAQTSC  274


>gi|118618840|ref|YP_907172.1| membrane protein MmpS3 [Mycobacterium ulcerans Agy99]
 gi|118570950|gb|ABL05701.1| conserved membrane protein MmpS3 [Mycobacterium ulcerans Agy99]
Length=315

 Score = 62.0 bits (149),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 50/90 (56%), Gaps = 2/90 (2%)

Query  97   NPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSL  156
             PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+SL
Sbjct  226  GPRQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSL  285

Query  157  Y--SRLNCSIVNTGAQTVVASTNNAIIATC  184
            +  SRLNCSI  +    + +++N+A   +C
Sbjct  286  FRVSRLNCSITTSDGTVLSSNSNDAPQTSC  315


>gi|183983233|ref|YP_001851524.1| membrane protein MmpS3 [Mycobacterium marinum M]
 gi|183176559|gb|ACC41669.1| conserved membrane protein MmpS3 [Mycobacterium marinum M]
Length=315

 Score = 62.0 bits (149),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 36/89 (41%), Positives = 50/89 (57%), Gaps = 2/89 (2%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY  157
            PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+SL+
Sbjct  227  PRQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF  286

Query  158  --SRLNCSIVNTGAQTVVASTNNAIIATC  184
              SRLNCSI  +    + +++N+A   +C
Sbjct  287  RVSRLNCSITTSDGTVLSSNSNDAPQTSC  315


>gi|336461922|gb|EGO40775.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=320

 Score = 62.0 bits (149),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 36/89 (41%), Positives = 50/89 (57%), Gaps = 2/89 (2%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY  157
            PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+SL+
Sbjct  232  PRQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF  291

Query  158  --SRLNCSIVNTGAQTVVASTNNAIIATC  184
              SRLNCSI  +    + +++N+A   +C
Sbjct  292  RVSRLNCSITTSDGTVLSSNSNDAPQTSC  320


>gi|108800262|ref|YP_640459.1| hypothetical protein Mmcs_3296 [Mycobacterium sp. MCS]
 gi|119869390|ref|YP_939342.1| hypothetical protein Mkms_3358 [Mycobacterium sp. KMS]
 gi|126435885|ref|YP_001071576.1| hypothetical protein Mjls_3307 [Mycobacterium sp. JLS]
 gi|108770681|gb|ABG09403.1| putative conserved membrane protein MmpS3 [Mycobacterium sp. 
MCS]
 gi|119695479|gb|ABL92552.1| putative conserved membrane protein MmpS3 [Mycobacterium sp. 
KMS]
 gi|126235685|gb|ABN99085.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=297

 Score = 60.5 bits (145),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 38/92 (42%), Positives = 53/92 (58%), Gaps = 6/92 (6%)

Query  97   NPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTE--SVVAT  154
             PR V Y VTGTK   D++ V Y DA G   T  NV +PW+  + + P  Q+E  SV A+
Sbjct  208  GPRQVTYSVTGTKAPGDIITVTYVDASGRRRTQRNVYIPWS--LTVTPISQSEVGSVQAS  265

Query  155  SLY--SRLNCSIVNTGAQTVVASTNNAIIATC  184
            SL+  S+LNCSI  +    + ++T NA   +C
Sbjct  266  SLFLVSKLNCSITTSDGTVLSSNTGNAAQTSC  297


>gi|342859909|ref|ZP_08716562.1| membrane protein MmpS3 [Mycobacterium colombiense CECT 3035]
 gi|342133041|gb|EGT86261.1| membrane protein MmpS3 [Mycobacterium colombiense CECT 3035]
Length=311

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 35/89 (40%), Positives = 50/89 (57%), Gaps = 2/89 (2%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY  157
            PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+SL+
Sbjct  223  PRQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF  282

Query  158  --SRLNCSIVNTGAQTVVASTNNAIIATC  184
              SRLNCSI  +    + +++N++   +C
Sbjct  283  RVSRLNCSITTSDGTVLSSNSNDSPQTSC  311


>gi|240168259|ref|ZP_04746918.1| membrane protein MmpS3 [Mycobacterium kansasii ATCC 12478]
Length=311

 Score = 60.1 bits (144),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 38/83 (46%), Positives = 48/83 (58%), Gaps = 3/83 (3%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY  157
            PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+SL+
Sbjct  223  PRQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF  282

Query  158  --SRLNCSIVNTGAQTVVASTNN  178
              S+LNCSI  T   TV++S NN
Sbjct  283  RVSKLNCSIT-TSDGTVLSSNNN  304


>gi|294993583|ref|ZP_06799274.1| hypothetical protein Mtub2_03509 [Mycobacterium tuberculosis 
210]
Length=299

 Score = 59.7 bits (143),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/89 (39%), Positives = 49/89 (56%), Gaps = 2/89 (2%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY  157
            PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+SL+
Sbjct  211  PRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF  270

Query  158  --SRLNCSIVNTGAQTVVASTNNAIIATC  184
              S+LNCSI  +    + +++N+    +C
Sbjct  271  RVSKLNCSITTSDGTVLSSNSNDGPQTSC  299


>gi|254822830|ref|ZP_05227831.1| membrane protein MmpS3 [Mycobacterium intracellulare ATCC 13950]
Length=92

 Score = 59.7 bits (143),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/92 (40%), Positives = 51/92 (56%), Gaps = 2/92 (2%)

Query  95   PLNPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVAT  154
            P  PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+
Sbjct  1    PAGPRQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEAS  60

Query  155  SLY--SRLNCSIVNTGAQTVVASTNNAIIATC  184
            SL+  SRLNCSI  +    + +++N++   +C
Sbjct  61   SLFRVSRLNCSITTSDGTVLSSNSNDSPQTSC  92


>gi|41408036|ref|NP_960872.1| MmpS3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118463396|ref|YP_881497.1| MmpS3 protein [Mycobacterium avium 104]
 gi|41396391|gb|AAS04255.1| MmpS3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118164683|gb|ABK65580.1| MmpS3 protein [Mycobacterium avium 104]
Length=266

 Score = 59.7 bits (143),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 35/88 (40%), Positives = 49/88 (56%), Gaps = 2/88 (2%)

Query  99   RTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY-  157
            R V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+SL+ 
Sbjct  179  RQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFR  238

Query  158  -SRLNCSIVNTGAQTVVASTNNAIIATC  184
             SRLNCSI  +    + +++N+A   +C
Sbjct  239  VSRLNCSITTSDGTVLSSNSNDAPQTSC  266


>gi|289762360|ref|ZP_06521738.1| membrane protein mmpS3 [Mycobacterium tuberculosis GM 1503]
 gi|289709866|gb|EFD73882.1| membrane protein mmpS3 [Mycobacterium tuberculosis GM 1503]
Length=296

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/89 (39%), Positives = 49/89 (56%), Gaps = 2/89 (2%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY  157
            PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+SL+
Sbjct  208  PRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF  267

Query  158  --SRLNCSIVNTGAQTVVASTNNAIIATC  184
              S+LNCSI  +    + +++N+    +C
Sbjct  268  RVSKLNCSITTSDGTVLSSNSNDGPQTSC  296


>gi|15609335|ref|NP_216714.1| membrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15841689|ref|NP_336726.1| hypothetical protein MT2254 [Mycobacterium tuberculosis CDC1551]
 gi|31793377|ref|NP_855870.1| membrane protein [Mycobacterium bovis AF2122/97]
 65 more sequence titles
 gi|121638079|ref|YP_978303.1| putative membrane protein mmpS3 [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|148662015|ref|YP_001283538.1| putative membrane protein MmpS3 [Mycobacterium tuberculosis H37Ra]
 gi|148823405|ref|YP_001288159.1| membrane protein mmpS3 [Mycobacterium tuberculosis F11]
 gi|167969409|ref|ZP_02551686.1| membrane protein mmpS3 [Mycobacterium tuberculosis H37Ra]
 gi|224990573|ref|YP_002645260.1| hypothetical protein JTY_2208 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253798737|ref|YP_003031738.1| hypothetical protein TBMG_01783 [Mycobacterium tuberculosis KZN 
1435]
 gi|254232351|ref|ZP_04925678.1| membrane protein mmpS3 [Mycobacterium tuberculosis C]
 gi|254364995|ref|ZP_04981041.1| membrane protein mmpS3 [Mycobacterium tuberculosis str. Haarlem]
 gi|254551238|ref|ZP_05141685.1| hypothetical protein Mtube_12363 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289443705|ref|ZP_06433449.1| membrane protein mmpS3 [Mycobacterium tuberculosis T46]
 gi|289447826|ref|ZP_06437570.1| membrane protein mmpS3 [Mycobacterium tuberculosis CPHL_A]
 gi|289554015|ref|ZP_06443225.1| membrane protein mmpS3 [Mycobacterium tuberculosis KZN 605]
 gi|289570314|ref|ZP_06450541.1| membrane protein mmpS3 [Mycobacterium tuberculosis T17]
 gi|289574884|ref|ZP_06455111.1| membrane protein mmpS3 [Mycobacterium tuberculosis K85]
 gi|289745471|ref|ZP_06504849.1| membrane protein [Mycobacterium tuberculosis 02_1987]
 gi|289750792|ref|ZP_06510170.1| membrane protein mmpS3 [Mycobacterium tuberculosis T92]
 gi|289754306|ref|ZP_06513684.1| membrane protein [Mycobacterium tuberculosis EAS054]
 gi|289758318|ref|ZP_06517696.1| membrane protein mmpS3 [Mycobacterium tuberculosis T85]
 gi|297634787|ref|ZP_06952567.1| hypothetical protein MtubK4_11721 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297731778|ref|ZP_06960896.1| hypothetical protein MtubKR_11843 [Mycobacterium tuberculosis 
KZN R506]
 gi|298525690|ref|ZP_07013099.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306776450|ref|ZP_07414787.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu001]
 gi|306780227|ref|ZP_07418564.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu002]
 gi|306789341|ref|ZP_07427663.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu004]
 gi|306793666|ref|ZP_07431968.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu005]
 gi|306968335|ref|ZP_07480996.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu009]
 gi|307084859|ref|ZP_07493972.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu012]
 gi|313659112|ref|ZP_07815992.1| hypothetical protein MtubKV_11853 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339632226|ref|YP_004723868.1| hypothetical protein MAF_22090 [Mycobacterium africanum GM041182]
 gi|340627203|ref|YP_004745655.1| hypothetical protein MCAN_22201 [Mycobacterium canettii CIPT 
140010059]
 gi|54037802|sp|P65379.1|MMPS3_MYCBO RecName: Full=Putative membrane protein mmpS3
 gi|54041466|sp|P65378.1|MMPS3_MYCTU RecName: Full=Putative membrane protein mmpS3
 gi|1237051|emb|CAA94267.1| PROBABLE CONSERVED MEMBRANE PROTEIN MMPS3 [Mycobacterium tuberculosis 
H37Rv]
 gi|13881944|gb|AAK46540.1| hypothetical protein MT2254 [Mycobacterium tuberculosis CDC1551]
 gi|31618969|emb|CAD97074.1| PROBABLE CONSERVED MEMBRANE PROTEIN MMPS3 [Mycobacterium bovis 
AF2122/97]
 gi|121493727|emb|CAL72202.1| Probable conserved membrane protein mmpS3 [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|124601410|gb|EAY60420.1| membrane protein mmpS3 [Mycobacterium tuberculosis C]
 gi|134150509|gb|EBA42554.1| membrane protein mmpS3 [Mycobacterium tuberculosis str. Haarlem]
 gi|148506167|gb|ABQ73976.1| putative conserved membrane protein MmpS3 [Mycobacterium tuberculosis 
H37Ra]
 gi|148721932|gb|ABR06557.1| membrane protein mmpS3 [Mycobacterium tuberculosis F11]
 gi|224773686|dbj|BAH26492.1| putative membrane protein [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253320240|gb|ACT24843.1| membrane protein mmpS3 [Mycobacterium tuberculosis KZN 1435]
 gi|289416624|gb|EFD13864.1| membrane protein mmpS3 [Mycobacterium tuberculosis T46]
 gi|289420784|gb|EFD17985.1| membrane protein mmpS3 [Mycobacterium tuberculosis CPHL_A]
 gi|289438647|gb|EFD21140.1| membrane protein mmpS3 [Mycobacterium tuberculosis KZN 605]
 gi|289539315|gb|EFD43893.1| membrane protein mmpS3 [Mycobacterium tuberculosis K85]
 gi|289544068|gb|EFD47716.1| membrane protein mmpS3 [Mycobacterium tuberculosis T17]
 gi|289685999|gb|EFD53487.1| membrane protein [Mycobacterium tuberculosis 02_1987]
 gi|289691379|gb|EFD58808.1| membrane protein mmpS3 [Mycobacterium tuberculosis T92]
 gi|289694893|gb|EFD62322.1| membrane protein [Mycobacterium tuberculosis EAS054]
 gi|289713882|gb|EFD77894.1| membrane protein mmpS3 [Mycobacterium tuberculosis T85]
 gi|298495484|gb|EFI30778.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308215091|gb|EFO74490.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu001]
 gi|308326843|gb|EFP15694.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu002]
 gi|308334033|gb|EFP22884.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu004]
 gi|308337841|gb|EFP26692.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu005]
 gi|308354028|gb|EFP42879.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu009]
 gi|308365567|gb|EFP54418.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu012]
 gi|323719098|gb|EGB28243.1| membrane protein mmpS3 [Mycobacterium tuberculosis CDC1551A]
 gi|326903812|gb|EGE50745.1| membrane protein mmpS3 [Mycobacterium tuberculosis W-148]
 gi|328458500|gb|AEB03923.1| membrane protein mmpS3 [Mycobacterium tuberculosis KZN 4207]
 gi|339331582|emb|CCC27279.1| putative conserved membrane protein MMPS3 [Mycobacterium africanum 
GM041182]
 gi|340005393|emb|CCC44552.1| putative conserved membrane protein MMPS3 [Mycobacterium canettii 
CIPT 140010059]
 gi|341602117|emb|CCC64791.1| probable conserved membrane protein mmpS3 [Mycobacterium bovis 
BCG str. Moreau RDJ]
 gi|344220020|gb|AEN00651.1| membrane protein [Mycobacterium tuberculosis CTRI-2]
Length=299

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/89 (39%), Positives = 49/89 (56%), Gaps = 2/89 (2%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY  157
            PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+SL+
Sbjct  211  PRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF  270

Query  158  --SRLNCSIVNTGAQTVVASTNNAIIATC  184
              S+LNCSI  +    + +++N+    +C
Sbjct  271  RVSKLNCSITTSDGTVLSSNSNDGPQTSC  299


>gi|308370942|ref|ZP_07423296.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu003]
 gi|308374522|ref|ZP_07436359.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu006]
 gi|308379144|ref|ZP_07485223.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu010]
 gi|308330196|gb|EFP19047.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu003]
 gi|308341601|gb|EFP30452.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu006]
 gi|308357969|gb|EFP46820.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu010]
 gi|339295112|gb|AEJ47223.1| membrane protein mmpS3 [Mycobacterium tuberculosis CCDC5079]
 gi|339298733|gb|AEJ50843.1| membrane protein mmpS3 [Mycobacterium tuberculosis CCDC5180]
Length=268

 Score = 58.2 bits (139),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 34/90 (38%), Positives = 49/90 (55%), Gaps = 2/90 (2%)

Query  97   NPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSL  156
             PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A+SL
Sbjct  179  GPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSL  238

Query  157  Y--SRLNCSIVNTGAQTVVASTNNAIIATC  184
            +  S+LNCSI  +    + +++N+    +C
Sbjct  239  FRVSKLNCSITTSDGTVLSSNSNDGPQTSC  268


>gi|333990344|ref|YP_004522958.1| hypothetical protein JDM601_1704 [Mycobacterium sp. JDM601]
 gi|333486312|gb|AEF35704.1| membrane protein MmpS3 [Mycobacterium sp. JDM601]
Length=298

 Score = 57.4 bits (137),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 35/92 (39%), Positives = 51/92 (56%), Gaps = 6/92 (6%)

Query  97   NPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTE--SVVAT  154
             P  V Y VTGTK  FD + + Y DA G   T  N  +PW+    L P  Q+E  SV A+
Sbjct  209  KPMQVTYSVTGTKAPFDQITITYVDASGQRRTQRNAYIPWS--FTLTPISQSEIGSVEAS  266

Query  155  SL--YSRLNCSIVNTGAQTVVASTNNAIIATC  184
            S+   S+LNCSI ++  + + +++N+A    C
Sbjct  267  SMLRLSKLNCSITSSDGRVLSSNSNDAPATRC  298


>gi|15827400|ref|NP_301663.1| hypothetical protein ML0877 [Mycobacterium leprae TN]
 gi|221229877|ref|YP_002503293.1| hypothetical protein MLBr_00877 [Mycobacterium leprae Br4923]
 gi|13092950|emb|CAC31258.1| putative membrane protein [Mycobacterium leprae]
 gi|219932984|emb|CAR70972.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=293

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 34/89 (39%), Positives = 48/89 (54%), Gaps = 2/89 (2%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY  157
            PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V         SV A SL+
Sbjct  205  PRQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEAFSLF  264

Query  158  --SRLNCSIVNTGAQTVVASTNNAIIATC  184
              S+LNC I  +    + +++N+A   +C
Sbjct  265  RVSKLNCLITTSDGTVLSSNSNDAPQTSC  293


>gi|118472224|ref|YP_888542.1| MmpS3 protein [Mycobacterium smegmatis str. MC2 155]
 gi|118173511|gb|ABK74407.1| MmpS3 protein [Mycobacterium smegmatis str. MC2 155]
Length=297

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 34/89 (39%), Positives = 46/89 (52%), Gaps = 2/89 (2%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY  157
            PR V Y VTGTK   D++ + Y D  G   T  NV +PWT  +         SV A+SL+
Sbjct  209  PRQVTYSVTGTKAPGDIITITYVDGNGNRRTLRNVYIPWTFTMTPISNSDVGSVEASSLF  268

Query  158  --SRLNCSIVNTGAQTVVASTNNAIIATC  184
              SRLNCSI  +    + ++ NN+    C
Sbjct  269  LVSRLNCSITASDGTVLSSNANNSAQTAC  297


>gi|308375809|ref|ZP_07445176.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu007]
 gi|308380295|ref|ZP_07489439.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu011]
 gi|308345008|gb|EFP33859.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu007]
 gi|308361903|gb|EFP50754.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu011]
Length=229

 Score = 56.6 bits (135),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 36/91 (40%), Positives = 53/91 (59%), Gaps = 6/91 (6%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTE--SVVATS  155
            PR V Y VTGTK   D+++V Y DA G   T  NV +PW+  V   P  Q++  SV A+S
Sbjct  141  PRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVT--PISQSDVGSVEASS  198

Query  156  LY--SRLNCSIVNTGAQTVVASTNNAIIATC  184
            L+  S+LNCSI  +    + +++N+    +C
Sbjct  199  LFRVSKLNCSITTSDGTVLSSNSNDGPQTSC  229


>gi|169629050|ref|YP_001702699.1| MmpS family protein [Mycobacterium abscessus ATCC 19977]
 gi|169241017|emb|CAM62045.1| Putative membrane protein, MmpS family [Mycobacterium abscessus]
Length=288

 Score = 55.8 bits (133),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 31/89 (35%), Positives = 49/89 (56%), Gaps = 2/89 (2%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSL-  156
            PR + Y VTG+K   D +++ +TD  G    + NV +PW+  V      +  SV A+S  
Sbjct  200  PRQITYSVTGSKAPLDRISITWTDGSGRTRVNPNVYIPWSITVTPISNSEIGSVSASSFL  259

Query  157  -YSRLNCSIVNTGAQTVVASTNNAIIATC  184
              S+LNC+I  +  Q + ++ NN+  ATC
Sbjct  260  RLSQLNCTITTSDGQVLSSNNNNSAQATC  288


>gi|254821578|ref|ZP_05226579.1| hypothetical protein MintA_16712 [Mycobacterium intracellulare 
ATCC 13950]
Length=123

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 38/61 (63%), Positives = 42/61 (69%), Gaps = 5/61 (8%)

Query  1    VALGAVATAVIINSGDSTSTKAIVGAPAPRTVISTSPRPTAPTSTSPHPSPSTLRPQLPP  60
            VA+GA+ATAVIINSGDS STKA +GAPAP  V S      A T  S  PSPS +  QLPP
Sbjct  61   VAVGAIATAVIINSGDSASTKATLGAPAPHPVTSAP----ATTKASAPPSPSRVA-QLPP  115

Query  61   E  61
            E
Sbjct  116  E  116


>gi|333990038|ref|YP_004522652.1| proline rich membrane protein [Mycobacterium sp. JDM601]
 gi|333486006|gb|AEF35398.1| proline rich membrane protein [Mycobacterium sp. JDM601]
Length=258

 Score = 53.9 bits (128),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 31/88 (36%), Positives = 47/88 (54%), Gaps = 6/88 (6%)

Query  98   PRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVLN-PGVQTESVVATSL  156
            P T+VY VTGT +    +++ Y D  G   T+FNV+LPW+K V L  P  +  +V   + 
Sbjct  172  PETIVYSVTGTGRA---LSIAYIDDDGVLKTEFNVALPWSKQVTLTPPATKAAAVTVVNF  228

Query  157  YSRLNCSIVNTGAQTVVASTNNAIIATC  184
              ++ CS+   GAQ  V     +I+  C
Sbjct  229  GEQITCSLSVDGAQ--VRQRTGSILTVC  254


>gi|169628629|ref|YP_001702278.1| hypothetical protein MAB_1539c [Mycobacterium abscessus ATCC 
19977]
 gi|169240596|emb|CAM61624.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=247

 Score = 53.1 bits (126),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 38/104 (37%), Positives = 53/104 (51%), Gaps = 16/104 (15%)

Query  92   PPAPLNP---------RTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVL  142
            PP P+NP          +VVY V G       +NV Y DA G    +FNV LPW K V L
Sbjct  147  PPIPVNPPTQGSQAATESVVYEVGGRG---PALNVTYFDASGSLQMEFNVKLPWRKEVKL  203

Query  143  NPGVQTESVVATSLYSR-LNCSIVNTGAQTVVASTNNAIIATCT  185
            N    T +VV  + +S  ++C+++  GAQ    S  +  +ATC+
Sbjct  204  NTEQVTNAVVIAADFSHDVSCTLLVNGAQK---SATSGKMATCS  244


>gi|108800602|ref|YP_640799.1| hypothetical protein Mmcs_3636 [Mycobacterium sp. MCS]
 gi|119869741|ref|YP_939693.1| hypothetical protein Mkms_3709 [Mycobacterium sp. KMS]
 gi|126436218|ref|YP_001071909.1| hypothetical protein Mjls_3641 [Mycobacterium sp. JLS]
 gi|108771021|gb|ABG09743.1| putative conserved proline rich membrane protein [Mycobacterium 
sp. MCS]
 gi|119695830|gb|ABL92903.1| putative conserved proline rich membrane protein [Mycobacterium 
sp. KMS]
 gi|126236018|gb|ABN99418.1| putative conserved proline rich membrane protein [Mycobacterium 
sp. JLS]
Length=253

 Score = 52.0 bits (123),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 29/80 (37%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query  92   PPAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVL-NPGVQTES  150
            PP   +  TV Y V G  ++   +N+ YTD  G P T+FNV+LPW+K V L +P   +  
Sbjct  161  PPPSESTETVTYDVVGEGRV---INITYTDTGGVPQTEFNVALPWSKQVELPSPARSSAR  217

Query  151  VVATSLYSRLNCSIVNTGAQ  170
            +   ++   + CS+   GAQ
Sbjct  218  ISIINVGRDVTCSVTINGAQ  237


>gi|118469241|ref|YP_888980.1| hypothetical protein MSMEG_4720 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118170528|gb|ABK71424.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=267

 Score = 50.4 bits (119),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 28/74 (38%), Positives = 39/74 (53%), Gaps = 4/74 (5%)

Query  99   RTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVL-NPGVQTESVVATSLY  157
             TVVY V G  +    +N+ Y D  G   T+FNV LPW+K V L  P  +T SV   +  
Sbjct  181  ETVVYEVAGEGRA---INITYLDTGGMLQTEFNVLLPWSKQVELPEPAKETASVSVLNFG  237

Query  158  SRLNCSIVNTGAQT  171
              ++C++   G QT
Sbjct  238  PEVSCTVTVDGVQT  251



Lambda     K      H
   0.312    0.126    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 177363380150


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40