BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3211 Length=527 Score E Sequences producing significant alignments: (Bits) Value gi|15610347|ref|NP_217727.1| ATP-dependent RNA helicase RhlE [My... 1056 0.0 gi|31794389|ref|NP_856882.1| ATP-dependent RNA helicase RhlE [My... 1054 0.0 gi|308370192|ref|ZP_07420594.2| ATP-dependent RNA helicase rhlE ... 1049 0.0 gi|289571435|ref|ZP_06451662.1| LOW QUALITY PROTEIN: ATP-depende... 982 0.0 gi|240172122|ref|ZP_04750781.1| putative ATP-dependent RNA helic... 786 0.0 gi|118618015|ref|YP_906347.1| ATP-dependent RNA helicase RhlE [M... 776 0.0 gi|183981369|ref|YP_001849660.1| ATP-dependent RNA helicase RhlE... 771 0.0 gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobac... 758 0.0 gi|342861169|ref|ZP_08717818.1| RhlE [Mycobacterium colombiense ... 726 0.0 gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD ... 725 0.0 gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellula... 713 0.0 gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacter... 687 0.0 gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. pa... 686 0.0 gi|336459520|gb|EGO38457.1| DNA/RNA helicase, superfamily II [My... 685 0.0 gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp.... 684 0.0 gi|333991566|ref|YP_004524180.1| ATP-dependent RNA helicase RhlE... 683 0.0 gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase domain-cont... 683 0.0 gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase-like protei... 682 0.0 gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase domain-c... 680 0.0 gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobac... 676 0.0 gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase domain-c... 676 0.0 gi|169630612|ref|YP_001704261.1| ATP-dependent DEAD-box RNA heli... 657 0.0 gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodoco... 643 0.0 gi|54026546|ref|YP_120788.1| putative ATP-dependent RNA helicase... 642 0.0 gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodo... 633 3e-179 gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rho... 630 1e-178 gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain-c... 597 1e-168 gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordoni... 596 4e-168 gi|289751901|ref|ZP_06511279.1| LOW QUALITY PROTEIN: ATP-depende... 594 1e-167 gi|343927604|ref|ZP_08767072.1| putative ATP-dependent RNA helic... 593 3e-167 gi|326383298|ref|ZP_08204986.1| DEAD/DEAH box helicase domain-co... 592 6e-167 gi|296138846|ref|YP_003646089.1| DEAD/DEAH box helicase [Tsukamu... 588 9e-166 gi|333921425|ref|YP_004495006.1| ATP-dependent RNA helicase DeaD... 585 5e-165 gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia ... 584 1e-164 gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amy... 580 2e-163 gi|226305684|ref|YP_002765644.1| ATP-dependent RNA helicase [Rho... 570 2e-160 gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily I... 570 3e-160 gi|229490988|ref|ZP_04384821.1| dead/deah box helicase [Rhodococ... 567 1e-159 gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-c... 559 5e-157 gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase domain-c... 553 2e-155 gi|325000518|ref|ZP_08121630.1| DEAD/DEAH box helicase domain pr... 552 5e-155 gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Str... 552 6e-155 gi|134097656|ref|YP_001103317.1| putative ATP-dependent RNA heli... 543 3e-152 gi|291006385|ref|ZP_06564358.1| putative ATP-dependent RNA helic... 543 4e-152 gi|296392647|ref|YP_003657531.1| DEAD/DEAH box helicase domain-c... 527 2e-147 gi|284992633|ref|YP_003411187.1| DEAD/DEAH box helicase domain-c... 525 7e-147 gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasp... 524 1e-146 gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helic... 520 2e-145 gi|317507502|ref|ZP_07965226.1| DEAD/DEAH box helicase [Segnilip... 520 2e-145 gi|334336351|ref|YP_004541503.1| DEAD/DEAH box helicase domain p... 519 6e-145 >gi|15610347|ref|NP_217727.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Rv] gi|15842798|ref|NP_337835.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis CDC1551] gi|121639098|ref|YP_979322.1| putative ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG str. Pasteur 1173P2] 64 more sequence titles Length=527 Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/527 (100%), Positives = 527/527 (100%), Gaps = 0/527 (0%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK Sbjct 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA Sbjct 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE Sbjct 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA Sbjct 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV Sbjct 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR Sbjct 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV Sbjct 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 Query 421 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSE 480 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSE Sbjct 421 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSE 480 Query 481 PGSGTASDSGSDVVSGSRSGNGEAARRRRRRRRRPTHAQDGFAARAN 527 PGSGTASDSGSDVVSGSRSGNGEAARRRRRRRRRPTHAQDGFAARAN Sbjct 481 PGSGTASDSGSDVVSGSRSGNGEAARRRRRRRRRPTHAQDGFAARAN 527 >gi|31794389|ref|NP_856882.1| ATP-dependent RNA helicase RhlE [Mycobacterium bovis AF2122/97] gi|31619985|emb|CAD95329.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium bovis AF2122/97] Length=527 Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/527 (99%), Positives = 526/527 (99%), Gaps = 0/527 (0%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MTAVKHTTESTFAKLG RDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK Sbjct 1 MTAVKHTTESTFAKLGARDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA Sbjct 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE Sbjct 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA Sbjct 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV Sbjct 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR Sbjct 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV Sbjct 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 Query 421 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSE 480 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSE Sbjct 421 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSE 480 Query 481 PGSGTASDSGSDVVSGSRSGNGEAARRRRRRRRRPTHAQDGFAARAN 527 PGSGTASDSGSDVVSGSRSGNGEAARRRRRRRRRPTHAQDGFAARAN Sbjct 481 PGSGTASDSGSDVVSGSRSGNGEAARRRRRRRRRPTHAQDGFAARAN 527 >gi|308370192|ref|ZP_07420594.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu002] gi|308378233|ref|ZP_07481964.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu009] gi|308380612|ref|ZP_07490534.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu011] gi|308406085|ref|ZP_07669502.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu012] gi|308325014|gb|EFP13865.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu002] gi|308353157|gb|EFP42008.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu009] gi|308360899|gb|EFP49750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu011] gi|308364543|gb|EFP53394.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis SUMu012] Length=524 Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/524 (99%), Positives = 524/524 (100%), Gaps = 0/524 (0%) Query 4 VKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFA 63 +KHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFA Sbjct 1 MKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFA 60 Query 64 FGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAV 123 FGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAV Sbjct 61 FGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAV 120 Query 124 RRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADE 183 RRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADE Sbjct 121 RRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADE 180 Query 184 MLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHD 243 MLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHD Sbjct 181 MLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHD 240 Query 244 ATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGD 303 ATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGD Sbjct 241 ATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGD 300 Query 304 LGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGR 363 LGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGR Sbjct 301 LGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGR 360 Query 364 AGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPA 423 AGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPA Sbjct 361 AGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPA 420 Query 424 RKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSEPGS 483 RKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSEPGS Sbjct 421 RKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSEPGS 480 Query 484 GTASDSGSDVVSGSRSGNGEAARRRRRRRRRPTHAQDGFAARAN 527 GTASDSGSDVVSGSRSGNGEAARRRRRRRRRPTHAQDGFAARAN Sbjct 481 GTASDSGSDVVSGSRSGNGEAARRRRRRRRRPTHAQDGFAARAN 524 >gi|289571435|ref|ZP_06451662.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17] gi|289545189|gb|EFD48837.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17] Length=489 Score = 982 bits (2539), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/489 (100%), Positives = 489/489 (100%), Gaps = 0/489 (0%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK Sbjct 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA Sbjct 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE Sbjct 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA Sbjct 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV Sbjct 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR Sbjct 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV Sbjct 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 Query 421 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSE 480 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSE Sbjct 421 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSE 480 Query 481 PGSGTASDS 489 PGSGTASDS Sbjct 481 PGSGTASDS 489 >gi|240172122|ref|ZP_04750781.1| putative ATP-dependent RNA helicase [Mycobacterium kansasii ATCC 12478] Length=504 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/467 (85%), Positives = 415/467 (89%), Gaps = 8/467 (1%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MTA+K TTE +FA+LGVRDEIVRAL E+GI+ PFAIQELTLPLAL GEDVIGQARTGMGK Sbjct 1 MTALKGTTELSFAQLGVRDEIVRALREKGIEHPFAIQELTLPLALAGEDVIGQARTGMGK 60 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 TFAFGVPLLQRITS RPLTG PRALVVVPTRELCLQVTDDLATA KYLTA Sbjct 61 TFAFGVPLLQRITSDTAARPLTGTPRALVVVPTRELCLQVTDDLATAAKYLTAEET---- 116 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 RRLSVVSIYGGR YEPQ+EALRAGADVVVGTPGRLLDL QQGHLQLGGLSVLVLDE Sbjct 117 ----RRLSVVSIYGGRAYEPQVEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDE 172 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERILRQIPA+RQSMLFSATMPDPIITLARTFMV+PTHIRAEAPHS A Sbjct 173 ADEMLDLGFLPDIERILRQIPAERQSMLFSATMPDPIITLARTFMVQPTHIRAEAPHSLA 232 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 VHD TEQFVYRAHALDKVELVSR+LQARDRGATMIFTRTKRTAQKVADEL ERGFAVGAV Sbjct 233 VHDTTEQFVYRAHALDKVELVSRILQARDRGATMIFTRTKRTAQKVADELKERGFAVGAV 292 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ+AREKALKAFR G ++VLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR Sbjct 293 HGDLGQIAREKALKAFRGGDVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 352 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAGRTGVAVTLVDWDEL RW+ ID ALGLGSPDPAETYSNSPHLYAEL+IPA A V Sbjct 353 TGRAGRTGVAVTLVDWDELDRWTTIDTALGLGSPDPAETYSNSPHLYAELSIPAEAAAAV 412 Query 421 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNP 467 GP R SQ +RR TD +GQ++ RR+RTRGGKPVTGHP P Sbjct 413 GPPRASQPKRRATDQEGQQSVTARSGARRRQRTRGGKPVTGHPAPGP 459 >gi|118618015|ref|YP_906347.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99] gi|118570125|gb|ABL04876.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99] Length=517 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/534 (79%), Positives = 453/534 (85%), Gaps = 24/534 (4%) Query 1 MTAVKHTTEST---FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTG 57 MTA+K TTE+T FA+LGVRDEIVRALGE I+ PFAIQELTLPLAL G+D+IGQARTG Sbjct 1 MTALKSTTETTPKTFAELGVRDEIVRALGERDIEGPFAIQELTLPLALAGDDLIGQARTG 60 Query 58 MGKTFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDT 117 MGKTFAFGVPLLQR++SG G RPLTGAPRALVVVPTRELCLQVT+DLA A KYLTA +T Sbjct 61 MGKTFAFGVPLLQRVSSGTGVRPLTGAPRALVVVPTRELCLQVTEDLAVAAKYLTATTET 120 Query 118 DDAAAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLV 177 D +R LSVVSIYGGR YEPQIEALRAGADVVVGTPGRLLDL QQGHLQLGGL VLV Sbjct 121 GD----QRPLSVVSIYGGRAYEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLYVLV 176 Query 178 LDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPH 237 LDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFM++PTHIRAEAPH Sbjct 177 LDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMIQPTHIRAEAPH 236 Query 238 SSAVHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAV 297 S AVHD TEQFVYRAHALDKVELV+RVLQAR+RGATMIFTRTKRTAQKVADEL ERGFAV Sbjct 237 SLAVHDTTEQFVYRAHALDKVELVTRVLQARERGATMIFTRTKRTAQKVADELNERGFAV 296 Query 298 GAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHR 357 GAVHGDLGQ+AREKALK+FR G ++VLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHR Sbjct 297 GAVHGDLGQVAREKALKSFRRGSVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHR 356 Query 358 IGRTGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAG 417 IGRTGRAGRTGVAVTLVDWDELPRW+MID+ALGLGSPDPAETYS+SPHLY EL+IP A Sbjct 357 IGRTGRAGRTGVAVTLVDWDELPRWTMIDKALGLGSPDPAETYSSSPHLYTELSIPTDAA 416 Query 418 GTVGPARKSQGRRRDT----DCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIV 473 GTVGP KS + R T D G+K+ + + RRRRTRGGKPVTGHP T P++S Sbjct 417 GTVGPPSKSGSKPRTTEKQDDQQGEKSGRARSDAGRRRRTRGGKPVTGHPATTPVAS--- 473 Query 474 GGDATSEPGSGTASDSGSDVVSGSRSGNGEAARRRRRRRRRPTHAQDGFAARAN 527 TA+++GS + S SGN A RRRRRRR+P QD AA AN Sbjct 474 ---------GETATETGSGFGASSPSGNA-GATRRRRRRRKPAGVQDNAAASAN 517 >gi|183981369|ref|YP_001849660.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M] gi|183174695|gb|ACC39805.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M] Length=517 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/477 (84%), Positives = 427/477 (90%), Gaps = 11/477 (2%) Query 1 MTAVKHTTEST---FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTG 57 MTA+K TTE+T FA+LGVRDEIVRALGE I+ PFAIQELTLPLAL G+D+IGQARTG Sbjct 1 MTALKSTTETTPKTFAELGVRDEIVRALGERDIECPFAIQELTLPLALAGDDLIGQARTG 60 Query 58 MGKTFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDT 117 MGKTFAFGVPLLQR++SG G RPLTGAPRALVVVPTRELCLQVT+DLA A KYLTA +T Sbjct 61 MGKTFAFGVPLLQRVSSGTGVRPLTGAPRALVVVPTRELCLQVTEDLAVAAKYLTATTET 120 Query 118 DDAAAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLV 177 D +R LSVVSIYGGR YEPQIEALRAGADVVVGTPGRLLDL QQGHLQLGGLSVLV Sbjct 121 GD----QRPLSVVSIYGGRAYEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLV 176 Query 178 LDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPH 237 LDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFM++PTHIRAEAPH Sbjct 177 LDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMIQPTHIRAEAPH 236 Query 238 SSAVHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAV 297 S AVHD TEQFVYRAHALDKVELV+RVLQAR+RGATMIFTRTKRTAQKVADEL ERGFAV Sbjct 237 SLAVHDTTEQFVYRAHALDKVELVTRVLQARERGATMIFTRTKRTAQKVADELNERGFAV 296 Query 298 GAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHR 357 GAVHGDLGQ+AREKALK+FR+G ++VLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHR Sbjct 297 GAVHGDLGQVAREKALKSFRSGSVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHR 356 Query 358 IGRTGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAG 417 IGRTGRAGRTGVAVTLVDWDELPRW+MID+ALGLGSPDPAETYS+SPHLY EL+IP A Sbjct 357 IGRTGRAGRTGVAVTLVDWDELPRWTMIDKALGLGSPDPAETYSSSPHLYTELSIPTDAA 416 Query 418 GTVGPARKSQGRRRDT----DCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISS 470 GTVGP KS + R T D G+K+ + + RRRRTRGGKPVTGHP T P++S Sbjct 417 GTVGPPSKSGSKPRTTEKQDDQQGEKSGRARSDAGRRRRTRGGKPVTGHPATTPVAS 473 >gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN] gi|221229833|ref|YP_002503249.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923] gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae] gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923] Length=544 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/500 (78%), Positives = 414/500 (83%), Gaps = 18/500 (3%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MTA T E FAKLGVRDEIVRAL E GI++PFAIQELTLPLAL G+DVIGQARTGMGK Sbjct 23 MTAPTSTAEPAFAKLGVRDEIVRALAERGIQQPFAIQELTLPLALAGDDVIGQARTGMGK 82 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 TFAFGVPLLQRI+ RPL+GAPR LVVVPTRELCLQV DDLAT KYLTA D Sbjct 83 TFAFGVPLLQRISVTTTARPLSGAPRGLVVVPTRELCLQVADDLATVAKYLTADDDN--- 139 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 RR SVVSIYGGR YEPQIEAL+ GADVVV TPGRLLDLCQQGHLQL GLSVLVLDE Sbjct 140 ----RRFSVVSIYGGRAYEPQIEALQTGADVVVSTPGRLLDLCQQGHLQLSGLSVLVLDE 195 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGF PDIER+L QIP DRQSMLFSATMPDPIITLARTFM +P HIRAEAPHS A Sbjct 196 ADEMLDLGFFPDIERLLGQIPTDRQSMLFSATMPDPIITLARTFMDQPIHIRAEAPHSLA 255 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 VHD T+QFVYRAHALDKVEL+SR+LQAR RGATMIFTRTKRTAQKV +EL ERGFAVGAV Sbjct 256 VHDTTQQFVYRAHALDKVELISRILQARGRGATMIFTRTKRTAQKVTNELNERGFAVGAV 315 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ+ARE AL+AFRTG +DVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR Sbjct 316 HGDLGQIARENALEAFRTGNVDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 375 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAGRTGVAVTLVDWDEL RW ID+ALGLG+PDPAETYSNSPHLY ELAIPA A GTV Sbjct 376 TGRAGRTGVAVTLVDWDELHRWETIDKALGLGTPDPAETYSNSPHLYTELAIPAEASGTV 435 Query 421 GPARKSQGRRRDTDCDGQK---TAQHAR-----NTPRRRRTRGGKPVTGHPGTNPISSPI 472 G RK+Q +RR TD DG K +AQ A+ N+ +R R RGG+PVTGHP NP + + Sbjct 436 GTPRKAQVKRRKTDRDGDKSGTSAQAAKAARTSNSVQRHRIRGGQPVTGHPTNNPSADSL 495 Query 473 -VGGDATSE--PGSGTASDS 489 G +E P S + S S Sbjct 496 ATNGKVVAETLPNSSSGSPS 515 >gi|342861169|ref|ZP_08717818.1| RhlE [Mycobacterium colombiense CECT 3035] gi|342131613|gb|EGT84883.1| RhlE [Mycobacterium colombiense CECT 3035] Length=518 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/487 (80%), Positives = 417/487 (86%), Gaps = 12/487 (2%) Query 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71 FA+LGVRDEIVRAL E+GI+ PFAIQELTLP+AL G+D+IGQARTGMGKTFAFGVPLLQR Sbjct 14 FAQLGVRDEIVRALAEKGIESPFAIQELTLPMALAGDDLIGQARTGMGKTFAFGVPLLQR 73 Query 72 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131 ITSG RPL G PRAL+VVPTRELCLQVTDDL A KYL+A D DDA R LSVV Sbjct 74 ITSGTAARPLNGTPRALIVVPTRELCLQVTDDLTLAAKYLSA--DKDDAGR-DRALSVVP 130 Query 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191 IYGGRPYEPQIEALRAGADVVVGTPGRLLDL QQ HLQLGGLSVLVLDEADEMLDLGFLP Sbjct 131 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLSQQNHLQLGGLSVLVLDEADEMLDLGFLP 190 Query 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251 DIERILRQIP DRQSMLFSATMPDPIITLARTFM +PTHIRAEAPHS+A HD T Q+VYR Sbjct 191 DIERILRQIPTDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYR 250 Query 252 AHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREK 311 AHALDKVELVSRVLQA RGATMIFTRTKRTAQKVADEL ERGFAVGAVHGDLGQ AREK Sbjct 251 AHALDKVELVSRVLQAEGRGATMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQAAREK 310 Query 312 ALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAV 371 ALKAFRTG IDVLVATDVAARGIDIDD+THVINYQ PEDE+ YVHRIGRTGRAG+TG+AV Sbjct 311 ALKAFRTGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAV 370 Query 372 TLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQGRRR 431 TLVDWDELPRWS+ID+ALGL P+PAETYSNSPHL+AEL IPA AGGTVG ARK QG+RR Sbjct 371 TLVDWDELPRWSLIDKALGLDCPEPAETYSNSPHLHAELGIPAEAGGTVGAARKPQGQRR 430 Query 432 DTDCDG------QKTAQHARNTPRRRRTRGGKPVTGHPGTNPISSPIVGGDATSE-PGSG 484 + D QK+ + AR + RRRTRGG+PV+ HP N +S G+AT+E P + Sbjct 431 SSSSDRSGKKPEQKSERPARRSGTRRRTRGGQPVSAHPSGNGTAS--ANGEATAEAPAAS 488 Query 485 TASDSGS 491 ++GS Sbjct 489 PPGNAGS 495 >gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum ATCC BAA-614] Length=443 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/458 (80%), Positives = 392/458 (86%), Gaps = 15/458 (3%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 M+ + TTE TFA LGVRDEIVRAL E+GI+RPFAIQELTLPLAL G+D+IGQARTGMGK Sbjct 1 MSTLDGTTELTFANLGVRDEIVRALAEKGIERPFAIQELTLPLALAGDDLIGQARTGMGK 60 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 T AFGVPLL RIT+G G R L G PRALVVVPTRELCLQV DL+ A KYL A D Sbjct 61 TLAFGVPLLNRITAGVGVRALNGTPRALVVVPTRELCLQVHGDLSDAAKYLKAEGD---- 116 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 R LSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDL QQGHLQLGGLS+LVLDE Sbjct 117 ----RPLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSMLVLDE 172 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERILRQIP +RQSMLFSATMP PIITLARTFM +PTHIRAEAPHS+A Sbjct 173 ADEMLDLGFLPDIERILRQIPEERQSMLFSATMPGPIITLARTFMNQPTHIRAEAPHSAA 232 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 HD TEQFVYRAHALDKVE+VSR+LQA RGATMIFTRTKRTAQKVADEL ERGF VGAV Sbjct 233 THDTTEQFVYRAHALDKVEMVSRILQAEGRGATMIFTRTKRTAQKVADELAERGFKVGAV 292 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ+AREKALKAFR G IDVLVATDVAARGIDIDD+THVINYQ PEDE+ YVHRIGR Sbjct 293 HGDLGQIAREKALKAFRNGDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGR 352 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAG+TG+AVTLVDWDELPRWSMID+ALGL SPDPAETYSNSPHLY E+ IPA AGG + Sbjct 353 TGRAGKTGIAVTLVDWDELPRWSMIDKALGLDSPDPAETYSNSPHLYEEMGIPAEAGGAI 412 Query 421 GPARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKP 458 G +K QG+RR T+ DGQKT R R+R G P Sbjct 413 GTPKKPQGQRRKTERDGQKTE-------RSGRSRSGAP 443 >gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950] Length=452 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/435 (83%), Positives = 385/435 (89%), Gaps = 8/435 (1%) Query 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71 FA+LGVRDEIVRAL E+GI+ PFAIQELTLPLAL G+D+IGQARTGMGKTFAFGVPLLQR Sbjct 12 FAQLGVRDEIVRALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71 Query 72 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131 ITSG RPL G PRAL+VVPTRELCLQVTDDLA A K+LTA D+ RRLSVV Sbjct 72 ITSGTAARPLNGTPRALIVVPTRELCLQVTDDLALAAKHLTA----DEG----RRLSVVP 123 Query 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191 IYGGRPYE QIEALRAGADVVVGTPGRLLDL QQGHLQLGGLSVLVLDEADEMLDLGFLP Sbjct 124 IYGGRPYEAQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLP 183 Query 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251 DIERILRQIP DRQSMLFSATMPDPIITLARTFM +PTHIRAEAPHS+A HD T Q+ YR Sbjct 184 DIERILRQIPVDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYAYR 243 Query 252 AHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREK 311 AHALDKVELVSR+LQA RGATMIFTRTKRTAQKVADEL ERGFAVGAVHGDLGQ+AREK Sbjct 244 AHALDKVELVSRILQAEGRGATMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREK 303 Query 312 ALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAV 371 ALKAFRTG IDVLVATDVAARGIDIDDVTHVINYQ PEDE+ YVHRIGRTGRAG+TGVAV Sbjct 304 ALKAFRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAV 363 Query 372 TLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQGRRR 431 TLVDWDEL RW++ID+ALGL +P+PAETYS+SPHLY EL+IPA AGGTVG ARK+QG RR Sbjct 364 TLVDWDELTRWALIDKALGLDNPEPAETYSSSPHLYDELSIPADAGGTVGAARKAQGARR 423 Query 432 DTDCDGQKTAQHARN 446 + QK Q + Sbjct 424 TGERATQKPGQKSEK 438 >gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155] gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155] Length=502 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/473 (76%), Positives = 392/473 (83%), Gaps = 15/473 (3%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MT + H+ FA+LGVRDEIVRAL E GI+ PFAIQELTLPLAL G+D+IGQARTGMGK Sbjct 1 MTQLNHS----FAELGVRDEIVRALAENGIEHPFAIQELTLPLALAGDDLIGQARTGMGK 56 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 T+AFGVPLL R++S D RPLTGAPRALVVVPTRELCLQV +DLA A K+L T+D Sbjct 57 TYAFGVPLLHRVSS-DENRPLTGAPRALVVVPTRELCLQVYNDLAGAAKHLP----TNDG 111 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 R+ +V SIYGGRPYEPQIEALR G DVVVGTPGRLLDL QQGHLQLGGLSVLVLDE Sbjct 112 ----RKFTVTSIYGGRPYEPQIEALRKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDE 167 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERIL+ P RQ+MLFSATMPDPIITLARTFM +PTHIRAEAPHS+A Sbjct 168 ADEMLDLGFLPDIERILQLTPDSRQAMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAA 227 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 HD T Q+ YRAHALDKVELVSR+LQAR RGATM+FTRTKRTAQKV+DEL ERGF VGAV Sbjct 228 THDTTAQYAYRAHALDKVELVSRILQARGRGATMVFTRTKRTAQKVSDELAERGFKVGAV 287 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ AREKALK+FRTG IDVLVATDVAARGIDIDDVTHVINYQCPEDE+ YVHRIGR Sbjct 288 HGDLGQGAREKALKSFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGR 347 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAG+TGVA+TLVDWDEL RW MID+AL LG+PDPAETYS+SPHLY +L IP A GTV Sbjct 348 TGRAGKTGVAITLVDWDELARWEMIDKALNLGNPDPAETYSSSPHLYEDLDIPTDATGTV 407 Query 421 GPARKSQGRRRDTDCDGQKTAQH--ARNTPRRRRTRGGKPVTGHPGTNPISSP 471 G K + D D +A T RRRTRGGKP+TGHP ++P + P Sbjct 408 GKPAKRATKASDEDEHRISSADRPARTRTRSRRRTRGGKPLTGHPESHPEAHP 460 >gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10] Length=505 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/498 (77%), Positives = 405/498 (82%), Gaps = 33/498 (6%) Query 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71 FA+LGVRDEIVRAL E+GI+ PFAIQELTLPLAL G+D+IGQARTGMGKTFAFGVPLLQR Sbjct 12 FAQLGVRDEIVRALDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71 Query 72 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131 IT+G R L G PRALVVVPTRELCLQVTDDL A K+LTA D R LSVV Sbjct 72 ITAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTA-----DGG---RPLSVVP 123 Query 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191 IYGGRPYEPQI+ALRAGADVVVGTPGRLLDL QQGHLQLGGLSVLVLDEADEMLDLGFLP Sbjct 124 IYGGRPYEPQIDALRAGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLP 183 Query 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251 DIERILRQIP DRQSMLFSATMPDPIITLARTFM +PTHIRAEAPHS+A HD T Q+VYR Sbjct 184 DIERILRQIPDDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYR 243 Query 252 AHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREK 311 AHALDKVELVSRVLQA RGATMIFTRTKRTAQKVADEL ERGF VGAVHGDLGQ+AREK Sbjct 244 AHALDKVELVSRVLQAESRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREK 303 Query 312 ALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAV 371 ALKAFRTG IDVLVATDVAARGIDIDDVTHVINYQ PEDE+ YVHRIGRTGRAG+ GVAV Sbjct 304 ALKAFRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAV 363 Query 372 TLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQGRRR 431 TLVDWDEL RW++ID+ALGL P+PAETYSNSPHLY EL IPA AGG VG ARK QG RR Sbjct 364 TLVDWDELARWALIDKALGLDVPEPAETYSNSPHLYEELGIPAGAGGRVGAARKPQGPRR 423 Query 432 DTDCDGQKTAQHARNT-----PRRRRTRGGKPVTGHPGTNPISSPIVGGDATSEPGSGTA 486 + K Q + RRRRTRGG+PV+GHP G+G A Sbjct 424 SAERATGKPDQKSETATRRSGTRRRRTRGGQPVSGHPS-----------------GNGAA 466 Query 487 SDSG---SDVVSGSRSGN 501 S +G +D +GS GN Sbjct 467 SSNGEAAADAPAGSPPGN 484 >gi|336459520|gb|EGO38457.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp. paratuberculosis S397] Length=505 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/498 (76%), Positives = 405/498 (82%), Gaps = 33/498 (6%) Query 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71 FA+LGVRDEIVRAL E+GI+ PFAIQELTLPLAL G+D+IGQARTGMGKTFAFGVPLLQR Sbjct 12 FAQLGVRDEIVRALDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71 Query 72 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131 IT+G R L G PRALVVVPTRELCLQVTDDL A K+LTA D R LSVV Sbjct 72 ITAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTA-----DGG---RPLSVVP 123 Query 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191 IYGGRPYEPQI+ALRAGADVVVGTPGRLLDL QQGHLQLGGLSVLVLDEADEMLDLGFLP Sbjct 124 IYGGRPYEPQIDALRAGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLP 183 Query 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251 DIERILRQIP DRQSMLFSATMPDPIITLARTFM +PTHIRAEAPHS+A HD T Q+VYR Sbjct 184 DIERILRQIPDDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYR 243 Query 252 AHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREK 311 AHALDKVELVSRVLQA RGATM+FTRTKRTAQKVADEL ERGF VGAVHGDLGQ+AREK Sbjct 244 AHALDKVELVSRVLQAESRGATMLFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREK 303 Query 312 ALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAV 371 ALKAFRTG IDVLVATDVAARGIDIDDVTHVINYQ PEDE+ YVHRIGRTGRAG+ GVAV Sbjct 304 ALKAFRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAV 363 Query 372 TLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQGRRR 431 TLVDWDEL RW++ID+ALGL P+PAETYSNSPHLY EL IPA AGG VG ARK QG RR Sbjct 364 TLVDWDELARWALIDKALGLDVPEPAETYSNSPHLYEELGIPAGAGGRVGAARKPQGPRR 423 Query 432 DTDCDGQKTAQHARNT-----PRRRRTRGGKPVTGHPGTNPISSPIVGGDATSEPGSGTA 486 + K Q + RRRRTRGG+PV+GHP G+G A Sbjct 424 SAERATGKPDQKSETATRRSGTRRRRTRGGQPVSGHPS-----------------GNGAA 466 Query 487 SDSG---SDVVSGSRSGN 501 S +G +D +GS GN Sbjct 467 SSNGEAAADAPAGSPPGN 484 >gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291] Length=505 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/498 (76%), Positives = 404/498 (82%), Gaps = 33/498 (6%) Query 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71 FA+LGVRDEIVRAL E+GI+ FAIQELTLPLAL G+D+IGQARTGMGKTFAFGVPLLQR Sbjct 12 FAQLGVRDEIVRALDEKGIQHSFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQR 71 Query 72 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131 IT+G R L G PRALVVVPTRELCLQVTDDL A K+LTA D R LSVV Sbjct 72 ITAGTAPRALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTA-----DGG---RPLSVVP 123 Query 132 IYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLP 191 IYGGRPYEPQI+ALRAGADVVVGTPGRLLDL QQGHLQLGGLSVLVLDEADEMLDLGFLP Sbjct 124 IYGGRPYEPQIDALRAGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLP 183 Query 192 DIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251 DIERILRQIP DRQSMLFSATMPDPIITLARTFM +PTHIRAEAPHS+A HD T Q+VYR Sbjct 184 DIERILRQIPDDRQSMLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYR 243 Query 252 AHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREK 311 AHALDKVELVSRVLQA RGATMIFTRTKRTAQKVADEL ERGF VGAVHGDLGQ+AREK Sbjct 244 AHALDKVELVSRVLQAESRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREK 303 Query 312 ALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAV 371 ALKAFRTG IDVLVATDVAARGIDIDDVTHVINYQ PEDE+ YVHRIGRTGRAG+ GVAV Sbjct 304 ALKAFRTGDIDVLVATDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAV 363 Query 372 TLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQGRRR 431 TLVDWDEL RW++ID+ALGL P+PAETYSNSPHLY EL IPA AGG VG ARK QG RR Sbjct 364 TLVDWDELARWALIDKALGLDVPEPAETYSNSPHLYEELGIPAGAGGRVGAARKPQGPRR 423 Query 432 DTDCDGQKTAQHARNT-----PRRRRTRGGKPVTGHPGTNPISSPIVGGDATSEPGSGTA 486 + K Q + RRRRTRGG+PV+GHP G+G A Sbjct 424 SAERATAKPDQKSETATRRSGTRRRRTRGGQPVSGHPS-----------------GNGAA 466 Query 487 SDSG---SDVVSGSRSGN 501 S +G +D +GS GN Sbjct 467 SSNGEAAADAPAGSPPGN 484 >gi|333991566|ref|YP_004524180.1| ATP-dependent RNA helicase RhlE [Mycobacterium sp. JDM601] gi|333487534|gb|AEF36926.1| ATP-dependent RNA helicase RhlE [Mycobacterium sp. JDM601] Length=508 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/448 (79%), Positives = 384/448 (86%), Gaps = 20/448 (4%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 + + T+ TFA+LGVRDEIVRAL E+GI+R FAIQELTLPLAL G+D+IGQARTGMGK Sbjct 5 IATTRPTSPPTFAELGVRDEIVRALAEDGIERAFAIQELTLPLALAGDDLIGQARTGMGK 64 Query 61 TFAFGVPLLQRI-TSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDD 119 T+ FGVPLLQR+ TS D RPLTG PRALVVVPTRELC+QV+ DLA A KYLTAG Sbjct 65 TYGFGVPLLQRVSTSTD--RPLTGIPRALVVVPTRELCIQVSGDLADAAKYLTAG----- 117 Query 120 AAAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLD 179 R LSV +IYGGRPYEPQIEAL+AGADVVVGTPGRLLDL QQGHLQLGGL+VLVLD Sbjct 118 ----DRPLSVQAIYGGRPYEPQIEALQAGADVVVGTPGRLLDLAQQGHLQLGGLTVLVLD 173 Query 180 EADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSS 239 EADEMLDLGFLPDIERIL +IP DRQSMLFSATMP PIITLAR+FM +PTHIRAEAPHSS Sbjct 174 EADEMLDLGFLPDIERILARIPDDRQSMLFSATMPGPIITLARSFMNQPTHIRAEAPHSS 233 Query 240 AVHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGA 299 AVHDATEQFVYRAHALDK ELV+RVLQAR RGATMIFTRTKRTAQKVAD+L ERGF VGA Sbjct 234 AVHDATEQFVYRAHALDKAELVARVLQARGRGATMIFTRTKRTAQKVADDLGERGFKVGA 293 Query 300 VHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIG 359 VHGDL Q+AREKALKAFRTG IDVLVATDVAARGIDIDDVTHV+NYQCP+DEK YVHRIG Sbjct 294 VHGDLNQVAREKALKAFRTGDIDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIG 353 Query 360 RTGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGT 419 RTGRAG+TGVAVTLVDWDEL RWSMID+AL L PDPAETYS+SPHL+ EL IP A G Sbjct 354 RTGRAGKTGVAVTLVDWDELARWSMIDKALNLQCPDPAETYSSSPHLFTELNIPTEATGA 413 Query 420 VG-----PARKSQ---GRRRDTDCDGQK 439 +G PA++S+ G RR++ D Q+ Sbjct 414 IGNAGRSPAKRSEGGDGERRESSADRQR 441 >gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii PYR-1] Length=494 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/426 (80%), Positives = 373/426 (88%), Gaps = 9/426 (2%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MT V TFA+LGVRDEIVRAL E GI+ FAIQELTLPLAL G+D+IGQARTGMGK Sbjct 1 MTPVTTHPSPTFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGK 60 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 TFAFGVPLL RIT+ D RPLTG PRAL+VVPTRELC+QV +DL A KYL A D+ Sbjct 61 TFAFGVPLLHRITT-DTERPLTGIPRALIVVPTRELCIQVYEDLVGASKYLMA----DET 115 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 R+L+V +IYGGRPYEPQIEAL+ G DVVVGTPGRLLDL QQGHLQLGGLSVLVLDE Sbjct 116 ----RKLTVTAIYGGRPYEPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDE 171 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERIL+QIPA RQ+MLFSATMPDPIITLARTFM +PTHIRAEAPHSSA Sbjct 172 ADEMLDLGFLPDIERILKQIPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEAPHSSA 231 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 HD+TEQF YRAHALDKVE+V+R+LQA RGATMIFTRTKRTAQKVADEL ERGF VGAV Sbjct 232 THDSTEQFAYRAHALDKVEMVARILQAEGRGATMIFTRTKRTAQKVADELGERGFKVGAV 291 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ AREKALK+FRTG +DVLVATDVAARGIDIDD+THVIN+Q PEDE+ YVHRIGR Sbjct 292 HGDLGQAAREKALKSFRTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGR 351 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAG+TG+AVTLVDWDELPRWSMID+ALGL +PDPAETYSNSPHLY EL IPA AGG++ Sbjct 352 TGRAGKTGIAVTLVDWDELPRWSMIDKALGLDTPDPAETYSNSPHLYEELNIPAEAGGSI 411 Query 421 GPARKS 426 G +++ Sbjct 412 GRPKRT 417 >gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. KMS] gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS] Length=507 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/470 (75%), Positives = 390/470 (83%), Gaps = 18/470 (3%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MT + + + TFA LGVRDEI RAL EEGI +PFAIQELTLP+AL G+D+IGQARTGMGK Sbjct 1 MTPLTTSVDMTFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGK 60 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 T+AFGVPLLQR+T+ D + L+G PRAL+VVPTRELCLQV DL+ A KYLTAG Sbjct 61 TYAFGVPLLQRVTT-DTEKELSGIPRALIVVPTRELCLQVHSDLSLAAKYLTAG------ 113 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 R+LSVVSIYGGRPYEPQIE+LR GADVVVGTPGRLLDL QQGHLQLGGLSVLVLDE Sbjct 114 ---DRKLSVVSIYGGRPYEPQIESLRKGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDE 170 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERILRQ P RQ+MLFSATMPDPIITLARTFM +PTHIRAE+P SSA Sbjct 171 ADEMLDLGFLPDIERILRQTPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSA 230 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 HD T QF YRAHALDKVE+VSR+LQA RGATMIFTRTKRTAQKVADEL ERGF VGAV Sbjct 231 THDTTAQFAYRAHALDKVEMVSRILQAEGRGATMIFTRTKRTAQKVADELAERGFKVGAV 290 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ AREKALK+FRTG +DVLVATDVAARGIDIDD+THVIN+Q PEDE+ YVHRIGR Sbjct 291 HGDLGQGAREKALKSFRTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGR 350 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAG+TGVAVTLVDWDELPRWSMID+ALGL +PDPAETYS+SPHLY EL IP AGG+V Sbjct 351 TGRAGKTGVAVTLVDWDELPRWSMIDKALGLNTPDPAETYSSSPHLYEELGIPTEAGGSV 410 Query 421 G-PARKSQGRRRDTDCDGQKTAQHARNTP-------RRRRTRGGKPVTGH 462 G P ++ +R + G++ + RRRTR GKPVTGH Sbjct 411 GEPKARAAAKRSERPARGERDGDRDGDDKPARSRSRNRRRTRAGKPVTGH 460 >gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. JLS] gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS] Length=507 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/470 (75%), Positives = 389/470 (83%), Gaps = 18/470 (3%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MT + + TFA LGVRDEI RAL EEGI +PFAIQELTLP+AL G+D+IGQARTGMGK Sbjct 1 MTPLTTPVDMTFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGK 60 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 T+AFGVPLLQR+T+ D + L+G PRAL+VVPTRELCLQV DL+ A KYLTAG Sbjct 61 TYAFGVPLLQRVTT-DTEKELSGIPRALIVVPTRELCLQVHSDLSLAAKYLTAG------ 113 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 R+LSVVSIYGGRPYEPQIE+LR GADVVVGTPGRLLDL QQGHLQLGGLSVLVLDE Sbjct 114 ---DRKLSVVSIYGGRPYEPQIESLRKGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDE 170 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERILRQ P RQ+MLFSATMPDPIITLARTFM +PTHIRAE+P SSA Sbjct 171 ADEMLDLGFLPDIERILRQTPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSA 230 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 HD T QF YRAHALDKVE+VSR+LQA RGATMIFTRTKRTAQKVADEL ERGF VGAV Sbjct 231 THDTTAQFAYRAHALDKVEMVSRILQADGRGATMIFTRTKRTAQKVADELAERGFKVGAV 290 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ AREKALK+FRTG +DVLVATDVAARGIDIDD+THVIN+Q PEDE+ YVHRIGR Sbjct 291 HGDLGQGAREKALKSFRTGEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGR 350 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAG+TGVAVTLVDWDELPRWSMID+ALGL +PDPAETYS+SPHLY EL IP AGG+V Sbjct 351 TGRAGKTGVAVTLVDWDELPRWSMIDKALGLNTPDPAETYSSSPHLYEELGIPTEAGGSV 410 Query 421 G-PARKSQGRRRDTDCDGQKTAQHARNTP-------RRRRTRGGKPVTGH 462 G P ++ +R + G++ + RRRTR GKPVTGH Sbjct 411 GEPKARAAAKRSERPARGERDGDRDGDDKPARSRSRNRRRTRAGKPVTGH 460 >gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium sp. Spyr1] gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1] Length=505 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/468 (75%), Positives = 386/468 (83%), Gaps = 13/468 (2%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MT V TFA+LGVRDEIVRAL E GI+ FAIQELTLPLAL G+D+IGQARTGMGK Sbjct 1 MTPVTTHPNPTFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGK 60 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 TFAFGVPLL RIT+ D RPLTG PRALVVVPTRELC+QV +DL A KYL A DD Sbjct 61 TFAFGVPLLHRITT-DTERPLTGIPRALVVVPTRELCIQVYEDLVHASKYLMA----DDT 115 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 R+L+V +IYGGRPYEPQIEAL+ G DVVVGTPGRLLDL QQGHLQLGGL+VLVLDE Sbjct 116 ----RKLTVTAIYGGRPYEPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDE 171 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERIL+QIPA RQ+MLFSATMPDPIITLARTFM +PTHIRAE SA Sbjct 172 ADEMLDLGFLPDIERILKQIPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSA 231 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 HD TEQF YRAHALDKVE+V+R+LQA RGATMIFTRTKRTAQKVADEL ERGF VGAV Sbjct 232 THDTTEQFAYRAHALDKVEMVARILQAEGRGATMIFTRTKRTAQKVADELGERGFRVGAV 291 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ AREKALK FR G +DVLVATDVAARGIDIDD+THVIN+Q PEDE+ YVHRIGR Sbjct 292 HGDLGQSAREKALKGFRNGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGR 351 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAG+TG+AVTLVDWDELPRWSMID+ALGL +PDPAETYSNSPHLY EL IP AGG++ Sbjct 352 TGRAGKTGIAVTLVDWDELPRWSMIDKALGLDTPDPAETYSNSPHLYDELNIPTEAGGSI 411 Query 421 G-PARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNP 467 G PAR + +R+ + A+ RRRTRGG+ V+GHP P Sbjct 412 GKPARSADKPKREPR---EPRAERPARDRTRRRTRGGQSVSGHPEGTP 456 >gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum PYR-GCK] Length=505 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/468 (75%), Positives = 386/468 (83%), Gaps = 13/468 (2%) Query 1 MTAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGK 60 MT V TFA+LGVRDEIVRAL E GI+ FAIQELTLPLAL G+D+IGQARTGMGK Sbjct 1 MTPVTTHPNPTFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGK 60 Query 61 TFAFGVPLLQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 TFAFGVPLL RIT+ D RPLTG PRALVVVPTRELC+QV +DL A KYL A DD Sbjct 61 TFAFGVPLLHRITT-DTERPLTGIPRALVVVPTRELCIQVYEDLVHASKYLMA----DDT 115 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 R+L+V +IYGGRPYEPQIEAL+ G DVVVGTPGRLLDL QQGHLQLGGL+VLVLDE Sbjct 116 ----RKLTVTAIYGGRPYEPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDE 171 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPDIERIL+QIPA RQ+MLFSATMPDPIITLARTFM +PTHIRAE SA Sbjct 172 ADEMLDLGFLPDIERILKQIPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSA 231 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 HD TEQF YRAHALDKVE+V+R+LQA RGATMIFTRTKRTAQKVADEL ERGF VGAV Sbjct 232 THDTTEQFAYRAHALDKVEMVARILQAEGRGATMIFTRTKRTAQKVADELGERGFRVGAV 291 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ AREKALK FR G +DVLVATDVAARGIDIDD+THVIN+Q PEDE+ YVHRIGR Sbjct 292 HGDLGQSAREKALKGFRNGDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGR 351 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAG+TG+AVTLVDWDELPRWSMID+ALGL +PDPAETYSNSPHLY EL IP AGG++ Sbjct 352 TGRAGKTGIAVTLVDWDELPRWSMIDKALGLDTPDPAETYSNSPHLYDELNIPTEAGGSI 411 Query 421 G-PARKSQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNP 467 G PAR + +R+ + A+ RRRTRGG+ V+GHP P Sbjct 412 GKPARSADKPKREPR---EPRAERPARDRTRRRTRGGQSVSGHPEGTP 456 >gi|169630612|ref|YP_001704261.1| ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus ATCC 19977] gi|169242579|emb|CAM63607.1| Probable ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus] Length=490 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/453 (74%), Positives = 368/453 (82%), Gaps = 27/453 (5%) Query 9 ESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPL 68 E TFA+LGVR EI RAL E GI+ PFAIQELTLPLAL G D+IGQARTGMGKT+AFGVPL Sbjct 5 EHTFAQLGVRKEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPL 64 Query 69 LQRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLS 128 L RI +G RPL G PRALVVVPTRELC+QV +DL A KYL+AG R + Sbjct 65 LHRIATGVEDRPLNGTPRALVVVPTRELCIQVYEDLTKASKYLSAG---------DRDFT 115 Query 129 VVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLG 188 VVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDL QQGHLQLGGL++LVLDEADEMLDLG Sbjct 116 VVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLAQQGHLQLGGLAMLVLDEADEMLDLG 175 Query 189 FLPDIERILRQIP---ADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDAT 245 FLPDIERIL P A RQSMLFSATMPDPIITLARTFM RPTHIRAE P +S+VHD+T Sbjct 176 FLPDIERILALAPSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDST 235 Query 246 EQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLG 305 EQFVYRAHALDK+ELVSR+LQA RGATMIFTRTKRTAQKV+DEL ERGFAVGAVHGDLG Sbjct 236 EQFVYRAHALDKIELVSRILQADGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLG 295 Query 306 QLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAG 365 Q+AREKAL +FR+G I+VLVATDVAARGIDIDDVTHVINYQCPED+K YVHRIGRTGRAG Sbjct 296 QIAREKALTSFRSGQINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAG 355 Query 366 RTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARK 425 RTG+AVTLVDWD++ RW +ID+ALGLG P+P ETYS SPHL+ EL IPA G++G Sbjct 356 RTGIAVTLVDWDDIARWQLIDKALGLGVPEPDETYSTSPHLFTELNIPADVTGSIGEKFS 415 Query 426 SQGRRRDTDCDGQKTAQHARNTPRRRRTRGGKP 458 +RR+ PR R G KP Sbjct 416 GGPKRRE---------------PRGERAEGEKP 433 >gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S] gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707] Length=545 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/486 (68%), Positives = 377/486 (78%), Gaps = 14/486 (2%) Query 8 TESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVP 67 T TF +LGVRDEIV+AL E GI+R FAIQELTLPLAL G+D+IGQARTGMGKTF FG+P Sbjct 39 TPPTFGELGVRDEIVKALAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGIP 98 Query 68 LLQRITSGD-GTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRR 126 LL R+++ D GT PL G PRALV+VPTRELC+QVT DL A KYL +G ++ Sbjct 99 LLHRVSTADSGTTPLDGTPRALVIVPTRELCVQVTQDLENASKYLKSG---------EKK 149 Query 127 LSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLD 186 L V+SIYGGRPYE QI+ALR G DVVVGTPGRLLDL QGHL LG + VLVLDEADEMLD Sbjct 150 LEVLSIYGGRPYEQQIDALRKGVDVVVGTPGRLLDLANQGHLILGKVGVLVLDEADEMLD 209 Query 187 LGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATE 246 LGFLPDIERIL +P RQ+MLFSATMP PIITLARTF+ +PTHIRAE SSAVH+ T Sbjct 210 LGFLPDIERILGMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEEADSSAVHERTT 269 Query 247 QFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQ 306 Q +YRAHALDK E+V+RVLQA RGATMIFTRTKRTAQKVAD+L ERGF VGAVHGDLGQ Sbjct 270 QHIYRAHALDKAEMVARVLQADGRGATMIFTRTKRTAQKVADDLNERGFNVGAVHGDLGQ 329 Query 307 LAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGR 366 +AREKAL FR+G +DVLVATDVAARGIDIDDVTHVINYQCPEDEK YVHRIGRTGRAGR Sbjct 330 IAREKALAGFRSGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 389 Query 367 TGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKS 426 TG+A+TLVDWD++PRW +ID+AL LG PDP ETYS+SPHLY +L IP A G++ R Sbjct 390 TGIAITLVDWDDVPRWQLIDKALALGVPDPVETYSSSPHLYEDLGIPTDAKGSIRKPRAE 449 Query 427 QGRRRDTDCDGQKTAQHARNTPR-RRRTRGGKPVTGHPGTNPISSPIVGGDATSEPGSGT 485 + + D + ++ + R RRRTRGGK G+ ++ G+ T E S T Sbjct 450 RPAKEHKDAPAAEKSEKSDAPKRSRRRTRGGKATD---GSASAAATATSGEKTPEVASST 506 Query 486 ASDSGS 491 ++GS Sbjct 507 TDEAGS 512 >gi|54026546|ref|YP_120788.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] gi|54018054|dbj|BAD59424.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] Length=1148 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/423 (77%), Positives = 347/423 (83%), Gaps = 13/423 (3%) Query 8 TESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVP 67 T TFA+LGVRDEIVRAL E GI+R FAIQELTLPLAL GED+IGQARTGMGKTF FGVP Sbjct 33 TPPTFAELGVRDEIVRALAEIGIERTFAIQELTLPLALAGEDLIGQARTGMGKTFGFGVP 92 Query 68 LLQRITSGD-GTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRR 126 LL RI + D GT PL G PRALV+VPTRELC+QVTDDL AGKYL + Sbjct 93 LLHRIATADSGTTPLDGTPRALVIVPTRELCIQVTDDLVRAGKYLRNH---------KGA 143 Query 127 LSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLD 186 L V +IYGGRPY+ QI ALR G DVVVGTPGRLLDL +Q HL LG + VLVLDEADEMLD Sbjct 144 LKVTAIYGGRPYDSQIAALREGVDVVVGTPGRLLDLAKQNHLILGKIGVLVLDEADEMLD 203 Query 187 LGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATE 246 LGFLPDIERIL +PA RQ+MLFSATMP PIITLARTF+ RPTHIRAE PH SAVHD T Sbjct 204 LGFLPDIERILTMVPAKRQTMLFSATMPGPIITLARTFLTRPTHIRAEEPHDSAVHDRTA 263 Query 247 QFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQ 306 QFVYRAHALDK EL++RVLQA RGATMIFTRTKRTAQKVAD+L ERGFAVGAVHGDLGQ Sbjct 264 QFVYRAHALDKAELIARVLQAEGRGATMIFTRTKRTAQKVADDLAERGFAVGAVHGDLGQ 323 Query 307 LAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGR 366 + REKAL FR G IDVLVATDVAARGIDIDDVTHVINYQCPEDEK YVHRIGRTGRAGR Sbjct 324 VQREKALDKFRKGVIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 383 Query 367 TGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV---GPA 423 TGVAVTL+DWDEL RW+ ID ALGLG P+P ETYS SPHL+++L IP GTV PA Sbjct 384 TGVAVTLIDWDELNRWAAIDAALGLGIPEPVETYSRSPHLFSDLGIPEGVTGTVRRAAPA 443 Query 424 RKS 426 R + Sbjct 444 RTA 446 >gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1] gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1] Length=555 Score = 633 bits (1632), Expect = 3e-179, Method: Compositional matrix adjust. Identities = 318/442 (72%), Positives = 356/442 (81%), Gaps = 10/442 (2%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 TFA+LGVRDEIVRAL E GI+R FAIQELTLPLAL G+D+IGQARTGMGKTF FGVPLL Sbjct 39 TFAELGVRDEIVRALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLH 98 Query 71 RITSG-DGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSV 129 RI+SG GT L G PRALV+VPTRELC+QVT DL A KYL + +L V Sbjct 99 RISSGTTGTAALDGTPRALVIVPTRELCIQVTKDLEGAAKYLKGE---------KNKLEV 149 Query 130 VSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGF 189 ++IYGGRPYE QI L+ GADVVVGTPGRLLDL QGHL LG + VLVLDEADEMLDLGF Sbjct 150 LAIYGGRPYETQIATLQKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGF 209 Query 190 LPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFV 249 LPDIERIL +P RQ+MLFSATMP PIITLARTF+ +PTHIRAE SAVHD T Q + Sbjct 210 LPDIERILGMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHI 269 Query 250 YRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309 YRAHALDK E+V+RVLQA RGATMIFTRTKRTAQKVAD+L ERGF+VG+VHGDL Q+AR Sbjct 270 YRAHALDKAEMVARVLQAEGRGATMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAR 329 Query 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369 EKALKAFRTG IDVLVATDVAARGIDIDDVTHVINYQCPEDEK YVHRIGRTGRAGRTG+ Sbjct 330 EKALKAFRTGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 389 Query 370 AVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQGR 429 AVTLVDWD++PRW +ID+ALGLG PDPAETYS+SPHL+ EL+IPA GT+ R + Sbjct 390 AVTLVDWDDIPRWQLIDKALGLGIPDPAETYSSSPHLFEELSIPAGTTGTIKRPRVEKAE 449 Query 430 RRDTDCDGQKTAQHARNTPRRR 451 + + A+ + NT R Sbjct 450 KVAPERSENTGAERSENTGAER 471 >gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4] gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4] Length=534 Score = 630 bits (1626), Expect = 1e-178, Method: Compositional matrix adjust. Identities = 317/436 (73%), Positives = 355/436 (82%), Gaps = 12/436 (2%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 TFA+LGVRDE+VRAL E GI+R FAIQELTLPLAL G+D+IGQARTGMGKTF FGVPLL Sbjct 39 TFAELGVRDEVVRALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLH 98 Query 71 RITSGD-GTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSV 129 RI+SG GT L G PRALV+VPTRELC+QVT DL A KYL + + L V Sbjct 99 RISSGTTGTAALDGTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKN--------KPLEV 150 Query 130 VSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGF 189 ++IYGGRPYE QI L+ GADVVVGTPGRLLDL QGHL LG + VLVLDEADEMLDLGF Sbjct 151 LAIYGGRPYETQIATLQKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGF 210 Query 190 LPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFV 249 LPDIERIL +P RQ+MLFSATMP PIITLARTF+ +PTHIRAE SAVHD T Q + Sbjct 211 LPDIERILNMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHI 270 Query 250 YRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309 YRAHALDK E+V+RVLQA RGATMIFTRTKRTAQKV+DEL ERGFAVG+VHGDL Q+AR Sbjct 271 YRAHALDKAEMVARVLQADGRGATMIFTRTKRTAQKVSDELAERGFAVGSVHGDLNQVAR 330 Query 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369 EKALKAFR+G IDVLVATDVAARGIDIDDVTHVINYQCPEDEK YVHRIGRTGRAGRTG+ Sbjct 331 EKALKAFRSGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 390 Query 370 AVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQ-- 427 AVTLVDWD++PRW +ID+ALGLG PDP ETYS+SPHLY EL+IPA A GT+ R + Sbjct 391 AVTLVDWDDIPRWQLIDKALGLGIPDPVETYSSSPHLYEELSIPAEATGTIKRPRVEKAA 450 Query 428 -GRRRDTDCDGQKTAQ 442 + D D + + A+ Sbjct 451 PAQSEDADTENGEKAE 466 >gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema mirum DSM 43827] gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM 43827] Length=609 Score = 597 bits (1540), Expect = 1e-168, Method: Compositional matrix adjust. Identities = 301/409 (74%), Positives = 337/409 (83%), Gaps = 21/409 (5%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 TF +LGVR+EIVRALGE GI+R FAIQELTLPLAL GEDVIGQARTG GKT FG+PLLQ Sbjct 53 TFTELGVREEIVRALGEAGIERAFAIQELTLPLALAGEDVIGQARTGTGKTLGFGIPLLQ 112 Query 71 R-ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSV 129 R IT GDGT P+ALVVVPTRELCLQVT DL A K++ + V Sbjct 113 RVITPGDGT------PQALVVVPTRELCLQVTHDLTDASKHMD--------------VRV 152 Query 130 VSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGF 189 ++IYGGRPYEPQI ALR G DVVVGTPGRLLDL +Q HL LG + LVLDEADEMLDLGF Sbjct 153 LAIYGGRPYEPQIAALRKGVDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGF 212 Query 190 LPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFV 249 LPDIER+LR +P +RQ+MLFSATMP PIITLARTF+ +PTH+RAE + AVH+ TEQF+ Sbjct 213 LPDIERVLRMVPDERQTMLFSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFI 272 Query 250 YRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309 YRAHALDKVEL++RVLQARDRG +MIFTRTKRTAQKVAD++ ERGFAV AVHGDLGQ AR Sbjct 273 YRAHALDKVELLARVLQARDRGLSMIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAR 332 Query 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369 E+AL+AFR+G IDVLVATDVAARGID++ VTHV+NYQCPEDEK YVHRIGRTGRAGRTGV Sbjct 333 EQALRAFRSGKIDVLVATDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGV 392 Query 370 AVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGG 418 AVTLVDWDE+PRW MI AL LG DP ETYS S HL+AEL IPA + G Sbjct 393 AVTLVDWDEIPRWQMISDALNLGKRDPVETYSTSDHLFAELGIPAGSTG 441 >gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262086740|gb|ACY22708.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 43247] Length=543 Score = 596 bits (1536), Expect = 4e-168, Method: Compositional matrix adjust. Identities = 322/485 (67%), Positives = 364/485 (76%), Gaps = 15/485 (3%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 TFA+LGV D IV AL ++G FAIQELTLPLA+ G+D+IGQARTGMGKTF FGVPLL Sbjct 26 TFAELGVDDRIVAALADDGKTHTFAIQELTLPLAMGGDDLIGQARTGMGKTFGFGVPLLH 85 Query 71 RITSGD--GTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLS 128 R+ + G R L PRAL++VPTRELC+QVT DL A K LT D A R L Sbjct 86 RLAHAEESGLRALDNTPRALIIVPTRELCIQVTGDLEVAAKKLT---DITLADGTVRPLK 142 Query 129 VVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLG 188 + SIYGGRPYE QI LRAG DVVVGTPGRLLDL QQGHL LG ++VLVLDEADEMLDLG Sbjct 143 ITSIYGGRPYESQIADLRAGVDVVVGTPGRLLDLAQQGHLILGKVAVLVLDEADEMLDLG 202 Query 189 FLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQF 248 FLPDIERI+ +P RQ+MLFSATMP PI+TLARTF+ RPTHIRAE SA+H+ T Q+ Sbjct 203 FLPDIERIMSALPTPRQTMLFSATMPGPIVTLARTFLHRPTHIRAEHADDSAIHERTTQY 262 Query 249 VYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLA 308 VYRAHALDK ELV+R+LQA RGATMIFTRTKRTAQKVAD+L ERGF VGAVHGDLGQ+A Sbjct 263 VYRAHALDKAELVARILQAEGRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVA 322 Query 309 REKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTG 368 REKALK FR G IDVLVATDVAARGIDIDDVTHVINYQ PED+K YVHRIGRTGRAGRTG Sbjct 323 REKALKRFRDGTIDVLVATDVAARGIDIDDVTHVINYQIPEDDKNYVHRIGRTGRAGRTG 382 Query 369 VAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIP-ATAGGTVGPARKSQ 427 +AVTLVDWDEL RW +I+ ALGLG P+PAETYS S HL +L+IP +T G V P R+S Sbjct 383 IAVTLVDWDELHRWELINNALGLGIPEPAETYSTSEHLRTDLSIPESTTGRIVAPKRESS 442 Query 428 GRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPGTNPISS-----PIVGGDATSEPG 482 + ++T + T RRRTRGGK G + S+ P DATS+ Sbjct 443 EKTERV----ERTPRERNTTRSRRRTRGGKASEGEDSDHSASTASDDAPATSADATSQSP 498 Query 483 SGTAS 487 SG S Sbjct 499 SGEGS 503 >gi|289751901|ref|ZP_06511279.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T92] gi|289692488|gb|EFD59917.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T92] Length=328 Score = 594 bits (1531), Expect = 1e-167, Method: Compositional matrix adjust. Identities = 294/295 (99%), Positives = 295/295 (100%), Gaps = 0/295 (0%) Query 135 GRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIE 194 GRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIE Sbjct 32 GRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIE 91 Query 195 RILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHA 254 RILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHA Sbjct 92 RILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHA 151 Query 255 LDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALK 314 LDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALK Sbjct 152 LDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALK 211 Query 315 AFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 374 AFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV Sbjct 212 AFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 271 Query 375 DWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQGR 429 DWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQG+ Sbjct 272 DWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQGQ 326 >gi|343927604|ref|ZP_08767072.1| putative ATP-dependent RNA helicase [Gordonia alkanivorans NBRC 16433] gi|343762245|dbj|GAA13998.1| putative ATP-dependent RNA helicase [Gordonia alkanivorans NBRC 16433] Length=550 Score = 593 bits (1528), Expect = 3e-167, Method: Compositional matrix adjust. Identities = 295/427 (70%), Positives = 342/427 (81%), Gaps = 10/427 (2%) Query 8 TESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVP 67 T TFA+LGV + IV AL ++G + FAIQELTLPLA+ G+D+IGQARTGMGKT+ FG+P Sbjct 16 TAPTFAELGVDERIVSALADDGKTQTFAIQELTLPLAMGGDDLIGQARTGMGKTYGFGIP 75 Query 68 LLQRITSGD--GTRPLTGAPRALVVVPTRELCLQVTDDLATAGKY--LTAGPDTDDAAA- 122 LL R+ + + G RPL PRAL++VPTRELC+QVT DL A + +T P A+ Sbjct 76 LLHRLANAEATGVRPLDNTPRALIIVPTRELCVQVTSDLEIAARKTDVTLAPGAGSGASG 135 Query 123 -----VRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLV 177 R L + SIYGGRPYE QI L++G DVVVGTPGRLLDL QQGHL LG +S+LV Sbjct 136 PKDTVTNRMLKITSIYGGRPYEAQIAELQSGVDVVVGTPGRLLDLAQQGHLVLGKVSILV 195 Query 178 LDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPH 237 LDEADEMLDLGFLPDIERI+ +P RQ+MLFSATMP PI+TLARTF+ RPTHIRAE + Sbjct 196 LDEADEMLDLGFLPDIERIMSALPTPRQTMLFSATMPGPIVTLARTFLHRPTHIRAENAN 255 Query 238 SSAVHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAV 297 SAVHD T+Q+ YRAHALDK ELV+R+LQA RGATMIFTRTKRTAQKVAD+L ERGF V Sbjct 256 DSAVHDRTKQYAYRAHALDKAELVARILQADGRGATMIFTRTKRTAQKVADDLAERGFKV 315 Query 298 GAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHR 357 GAVHGDLGQ+AREKAL FR G IDVLVATDVAARGIDIDDVTHVINYQCPED+K YVHR Sbjct 316 GAVHGDLGQIAREKALGRFRNGTIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHR 375 Query 358 IGRTGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAG 417 IGRTGRAGRTG+AVTLVDWDEL RW +ID+ALGLG P+PAETYS S HL+ E++IP + Sbjct 376 IGRTGRAGRTGIAVTLVDWDELHRWELIDKALGLGIPEPAETYSTSEHLHEEMSIPDSVT 435 Query 418 GTVGPAR 424 G + A+ Sbjct 436 GRIVAAK 442 >gi|326383298|ref|ZP_08204986.1| DEAD/DEAH box helicase domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326198048|gb|EGD55234.1| DEAD/DEAH box helicase domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length=526 Score = 592 bits (1525), Expect = 6e-167, Method: Compositional matrix adjust. Identities = 301/427 (71%), Positives = 337/427 (79%), Gaps = 7/427 (1%) Query 8 TESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVP 67 T TFA+LGV IV AL +G R FAIQELTLPLAL G D+IGQARTGMGKT+ FGVP Sbjct 26 TAPTFAELGVDAAIVAALEADGKTRTFAIQELTLPLALGGSDLIGQARTGMGKTYGFGVP 85 Query 68 LLQRITSGD--GTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRR 125 LL R+ + + G R L PRAL++VPTRELC+QVT+DL A K G D R Sbjct 86 LLHRLVNAESTGLRGLDNTPRALIIVPTRELCVQVTEDLEVAAK----GVDVTLTDGTVR 141 Query 126 RLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEML 185 L + SIYGGRPYE QIE L+ G DVVVGTPGRLLDL QQGHL LG + VLVLDEADEML Sbjct 142 PLKITSIYGGRPYEQQIEELQTGVDVVVGTPGRLLDLAQQGHLVLGKVGVLVLDEADEML 201 Query 186 DLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDAT 245 DLGFLPDIERI+ +P DRQ+MLFSATMP PI+TLARTF+ RPTHIRAE + SAVH+ T Sbjct 202 DLGFLPDIERIMGALPTDRQTMLFSATMPGPIVTLARTFLNRPTHIRAEHANDSAVHERT 261 Query 246 EQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLG 305 Q+VYRAHA+DK ELV+RVLQ+ RGATMIFTRTKRTAQKVAD+L ERGF+VGAVHGDLG Sbjct 262 TQYVYRAHAMDKAELVARVLQSEGRGATMIFTRTKRTAQKVADDLAERGFSVGAVHGDLG 321 Query 306 QLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAG 365 Q+AREKAL FR G IDVLVATDVAARGID+DDVTHVINYQCP+DEK YVHRIGRTGRAG Sbjct 322 QVAREKALNKFREGKIDVLVATDVAARGIDVDDVTHVINYQCPDDEKTYVHRIGRTGRAG 381 Query 366 RTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVG-PAR 424 RTG+A+TLVDWDEL RW +ID+ALGL DP ETYS S HL +L IP A G +G PAR Sbjct 382 RTGIAITLVDWDELHRWELIDKALGLDMADPVETYSTSDHLREQLGIPDDATGRIGAPAR 441 Query 425 KSQGRRR 431 S RR Sbjct 442 SSDERRE 448 >gi|296138846|ref|YP_003646089.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162] gi|296026980|gb|ADG77750.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola DSM 20162] Length=536 Score = 588 bits (1516), Expect = 9e-166, Method: Compositional matrix adjust. Identities = 298/426 (70%), Positives = 338/426 (80%), Gaps = 13/426 (3%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 +FA+LGV IV ALG+ GI+R FAIQELTLPLAL G D+IGQARTGMGKT+ FGVPLL Sbjct 37 SFAELGVDQGIVDALGKRGIERTFAIQELTLPLALAGNDLIGQARTGMGKTYGFGVPLLD 96 Query 71 RITSG-------DGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAV 123 R+ + DG R L G PRAL++VPTRELC+QVTDDLA A + Sbjct 97 RLVTQARADVGEDGLRALDGTPRALIIVPTRELCVQVTDDLAQASDGVRV-----QTTKG 151 Query 124 RRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADE 183 R L + SIYGGRPYE QIEAL+ G DVVVGTPGRLLDL QGHL LG + +LVLDEADE Sbjct 152 ERDLKITSIYGGRPYEAQIEALQKGVDVVVGTPGRLLDLANQGHLVLGKIQILVLDEADE 211 Query 184 MLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHD 243 MLDLGFLPDIERIL +P DRQ+MLFSATMP PIITLARTF+ +PTH+RAE SAVH+ Sbjct 212 MLDLGFLPDIERILTMVPTDRQTMLFSATMPGPIITLARTFLKQPTHVRAEHHDDSAVHE 271 Query 244 ATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGD 303 T Q+VYRAHALDK ELV++VLQA+ RGATMIFTRTKRTAQKVADEL ERGF VGAVHGD Sbjct 272 RTTQYVYRAHALDKTELVAKVLQAQGRGATMIFTRTKRTAQKVADELGERGFKVGAVHGD 331 Query 304 LGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGR 363 LGQ+AREKAL FR G IDVLVATDVAARGIDIDDVTHVIN+QCPED+K YVHRIGRTGR Sbjct 332 LGQVAREKALGKFRDGSIDVLVATDVAARGIDIDDVTHVINFQCPEDDKTYVHRIGRTGR 391 Query 364 AGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAI-PATAGGTVGP 422 AG+TG AVTLVDWDEL RW +ID+ALGLG P+P ETYS+S HL+ +L I P G G Sbjct 392 AGKTGTAVTLVDWDELHRWELIDKALGLGKPEPVETYSSSEHLFTDLGIDPKVKGSLPGV 451 Query 423 ARKSQG 428 ++++G Sbjct 452 RKRAEG 457 >gi|333921425|ref|YP_004495006.1| ATP-dependent RNA helicase DeaD [Amycolicicoccus subflavus DQS3-9A1] gi|333483646|gb|AEF42206.1| ATP-dependent RNA helicase DeaD [Amycolicicoccus subflavus DQS3-9A1] Length=534 Score = 585 bits (1509), Expect = 5e-165, Method: Compositional matrix adjust. Identities = 291/430 (68%), Positives = 342/430 (80%), Gaps = 8/430 (1%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 +FA+LGV D IVRAL E+GI+R FAIQELTLPLAL GED+IGQARTGMGKTF FGVPLL Sbjct 30 SFAELGVNDNIVRALNEQGIERTFAIQELTLPLALAGEDLIGQARTGMGKTFGFGVPLLH 89 Query 71 RITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVV 130 RI +G + PL G PRALVVVPTRELC+QVT DL AG+YL+AG A R+LSV Sbjct 90 RIVTG--SAPLDGTPRALVVVPTRELCIQVTKDLTAAGRYLSAG-----ANGSSRKLSVS 142 Query 131 SIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFL 190 +IYGGRPYE Q AL AG DVVVGTPGRLLDL Q +L+L G+S++VLDEADEMLDLGFL Sbjct 143 AIYGGRPYEEQTSALSAGVDVVVGTPGRLLDLANQKYLKLDGISIVVLDEADEMLDLGFL 202 Query 191 PDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVY 250 PDIE+IL ++P RQ+MLFSATMP PIITLARTF+ +PTH+RAE SSAVHD T QFVY Sbjct 203 PDIEKILSRVPDVRQTMLFSATMPGPIITLARTFLTQPTHVRAEETDSSAVHDRTRQFVY 262 Query 251 RAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLARE 310 RAHALDK+ELVS+VLQAR+RGA M+FTRTKR A +++ +L +RGFAV A+HGDLGQ ARE Sbjct 263 RAHALDKLELVSKVLQARERGAAMVFTRTKRQADQLSRDLEQRGFAVCAIHGDLGQGARE 322 Query 311 KALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVA 370 KAL++FR+G +VLVATDVAARGIDIDDVTHV+N+ CP+DE YVHR+GRTGRAGRTG+A Sbjct 323 KALRSFRSGKANVLVATDVAARGIDIDDVTHVVNFHCPDDENTYVHRVGRTGRAGRTGIA 382 Query 371 VTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVG-PARKSQGR 429 VTLVDW++L RW I Q L L P ETYS S HL+ +L IP A G + PAR + + Sbjct 383 VTLVDWEDLERWKHISQTLDLKIDAPVETYSTSDHLFKDLDIPDDASGRISVPARDASPQ 442 Query 430 RRDTDCDGQK 439 D +K Sbjct 443 SEDVTASDEK 452 >gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4] gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4] Length=499 Score = 584 bits (1505), Expect = 1e-164, Method: Compositional matrix adjust. Identities = 296/420 (71%), Positives = 334/420 (80%), Gaps = 6/420 (1%) Query 14 KLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRIT 73 +LGVR EIV AL E GI FAIQELTLPLAL G D+IGQARTGMGKT+ FGVPLL RI+ Sbjct 21 ELGVRPEIVTALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRIS 80 Query 74 SGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIY 133 +G+ TR L G PRALV+VPTRELCLQVT DL A LTA + R L V++IY Sbjct 81 TGEATRELDGTPRALVIVPTRELCLQVTQDLKIAATGLTA-----STGSGTRPLKVLAIY 135 Query 134 GGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDI 193 GG PYE Q EAL G DVVVGTPGRLLDL Q L LG + LVLDEADEMLDLGF PDI Sbjct 136 GGTPYEQQTEALEKGVDVVVGTPGRLLDLANQSKLVLGKVEALVLDEADEMLDLGFHPDI 195 Query 194 ERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAH 253 E++LR +P RQ+MLFSATMP PIITLARTF+ +PTHIRAEA S A H+ T Q VYRAH Sbjct 196 EKLLRMVPEKRQTMLFSATMPGPIITLARTFLTKPTHIRAEAADSGATHENTTQHVYRAH 255 Query 254 ALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKAL 313 +LDK E+V+R+LQA RGATMIF RTKRTAQK+AD+L ERGF VGA+HGDLGQ AREK+L Sbjct 256 SLDKPEVVARILQAEGRGATMIFCRTKRTAQKLADDLAERGFRVGAIHGDLGQGAREKSL 315 Query 314 KAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTL 373 KAFR+G +DVLVATDVAARGID+DDVTHVINYQCPEDEK YVHRIGRTGRAGRTGVAVTL Sbjct 316 KAFRSGDVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTL 375 Query 374 VDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVG-PARKSQGRRRD 432 VDWD+LPRW +ID+ALGL +PAETYS S HL ++L IP +AGG +G P GRR + Sbjct 376 VDWDDLPRWGLIDKALGLDFGEPAETYSTSAHLRSDLGIPESAGGRIGAPTGTGSGRRTE 435 >gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32] gi|340524413|gb|AEK39618.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699] Length=598 Score = 580 bits (1495), Expect = 2e-163, Method: Compositional matrix adjust. Identities = 293/439 (67%), Positives = 342/439 (78%), Gaps = 24/439 (5%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 TFA GV+ EIV+ALGE GI+R FAIQELTLPLA+ G+D+IGQARTGMGKT FGVPLL Sbjct 75 TFASFGVKPEIVKALGEAGIERTFAIQELTLPLAMAGDDLIGQARTGMGKTLGFGVPLLH 134 Query 71 RI-TSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSV 129 R+ GDGT P+ LVVVPTRELC+QV +DL AGK+L + Sbjct 135 RVQVPGDGT------PQVLVVVPTRELCIQVANDLKGAGKHLG--------------IRT 174 Query 130 VSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGF 189 ++IYGGRPYEPQIEALR G DVV+GTPGRLLDL +Q HL LG + LVLDEADEMLDLGF Sbjct 175 LAIYGGRPYEPQIEALRKGIDVVIGTPGRLLDLAEQQHLVLGKVRGLVLDEADEMLDLGF 234 Query 190 LPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFV 249 LPDIERILR +P +RQ+MLFSATMP PIITLARTF+ +PTHIRAE +SA+H+ T QFV Sbjct 235 LPDIERILRMVPDERQTMLFSATMPGPIITLARTFLRQPTHIRAEENDASAIHERTTQFV 294 Query 250 YRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309 YRAH++DK E+++RVLQA DRG TMIF+RTKRTAQKVAD+L ERGFA AVHGDLGQ AR Sbjct 295 YRAHSMDKPEVIARVLQAEDRGLTMIFSRTKRTAQKVADDLVERGFAAAAVHGDLGQGAR 354 Query 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369 E+AL+AFR+G +DVLVATDVAARGIDIDDVTHVINYQCP+DEK YVHRIGRTGRAGRTGV Sbjct 355 EQALRAFRSGKVDVLVATDVAARGIDIDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGV 414 Query 370 AVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQ-- 427 AVTLVDWDE+PRW +I LGL P+P ETYS+SPHL+ +L IP G + A +++ Sbjct 415 AVTLVDWDEMPRWKLISDTLGLDKPEPVETYSSSPHLFEDLGIPEGTKGRLPLANRTRAG 474 Query 428 -GRRRDTDCDGQKTAQHAR 445 + D G+K R Sbjct 475 LAAEEEEDLGGKKRGPRGR 493 >gi|226305684|ref|YP_002765644.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] gi|226184801|dbj|BAH32905.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4] Length=474 Score = 570 bits (1470), Expect = 2e-160, Method: Compositional matrix adjust. Identities = 287/405 (71%), Positives = 321/405 (80%), Gaps = 15/405 (3%) Query 43 LALDGEDVIGQARTGMGKTFAFGVPLLQRI-TSGDGTRPLTGAPRALVVVPTRELCLQVT 101 +AL G+D+IGQARTGMGKTF FGVPLL RI T+ +GT L G PRAL++VPTRELC+QV Sbjct 1 MALAGDDLIGQARTGMGKTFGFGVPLLHRIVTAENGTAVLDGTPRALIIVPTRELCIQVA 60 Query 102 DDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLD 161 DL A KYL G R L V+ IYGGRPYE QI AL+ G DVVVGTPGRLLD Sbjct 61 RDLENASKYLRVG---------DRGLQVLPIYGGRPYEAQISALQKGVDVVVGTPGRLLD 111 Query 162 LCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLA 221 L Q HL LG + VLVLDEADEMLDLGFLPDIER++ +P RQ+MLFSATMP PIITLA Sbjct 112 LANQSHLILGKVGVLVLDEADEMLDLGFLPDIERLMGMVPDKRQTMLFSATMPGPIITLA 171 Query 222 RTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKR 281 RTF+ +PTHIRAE SSAVHD T Q +YRAHALDK E+V+RVLQA RGATMIFTRTKR Sbjct 172 RTFLTQPTHIRAEEAESSAVHDRTSQHIYRAHALDKAEMVARVLQAEGRGATMIFTRTKR 231 Query 282 TAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTH 341 TAQKVAD+L ERGF+VGAVHGDLGQ+AREKALK FR G +DVLVATDVAARGIDIDDVTH Sbjct 232 TAQKVADDLAERGFSVGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDDVTH 291 Query 342 VINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYS 401 VINYQCPEDEK YVHRIGRTGRAGRTG+AVTLVDWD++PRW +ID+AL LG PDP ETYS Sbjct 292 VINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLIDKALSLGIPDPVETYS 351 Query 402 NSPHLYAELAIPATAGGTV-----GPARKSQGRRRDTDCDGQKTA 441 +SPHLY EL+IPA A GTV P + + + D KTA Sbjct 352 SSPHLYEELSIPADAKGTVRRAKAAPEKAATDKAATDKADAPKTA 396 >gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM 43017] Length=559 Score = 570 bits (1468), Expect = 3e-160, Method: Compositional matrix adjust. Identities = 290/418 (70%), Positives = 335/418 (81%), Gaps = 21/418 (5%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 TFA LGV +IVRAL E GI+R F IQ LTLPLAL GEDVIGQARTG GKT FGVPLLQ Sbjct 24 TFADLGVHPDIVRALSESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQ 83 Query 71 R-ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSV 129 R +T GDGT P+ALVVVPTRELCLQV+ DLA AGKYL VR + Sbjct 84 RLVTPGDGT------PQALVVVPTRELCLQVSQDLAEAGKYL----------GVR----I 123 Query 130 VSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGF 189 SIYGGRPYE QI++LR+G DVV+GTPGRLLDL +Q +L LG +S LVLDEADEMLDLGF Sbjct 124 TSIYGGRPYESQIQSLRSGVDVVIGTPGRLLDLAEQRNLVLGKISTLVLDEADEMLDLGF 183 Query 190 LPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFV 249 LPDIERILR +P DRQ+MLFSATMP PI+TLARTF+ +PTHIRAEA + A+H+ T QFV Sbjct 184 LPDIERILRMVPEDRQTMLFSATMPGPILTLARTFLRQPTHIRAEAGETGAIHERTTQFV 243 Query 250 YRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309 YRAH+LDK EL+++VLQA RG TMIFTRTKRTAQKVAD+L ERGFA AVHGDLGQ AR Sbjct 244 YRAHSLDKPELIAKVLQAEGRGLTMIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAR 303 Query 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369 E+AL+AFR+G +D+LVATDVAARGID++ VTHVINYQ PEDEK YVHRIGRTGRAGRTGV Sbjct 304 EQALRAFRSGKVDILVATDVAARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTGV 363 Query 370 AVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQ 427 A+TLVDWDE+PRW +I LGL P+P ETYS S HL+ +L IP A G + +++++ Sbjct 364 AITLVDWDEVPRWKLISDELGLDMPEPVETYSTSKHLFTDLGIPEDATGRLPLSKRTR 421 >gi|229490988|ref|ZP_04384821.1| dead/deah box helicase [Rhodococcus erythropolis SK121] gi|229322104|gb|EEN87892.1| dead/deah box helicase [Rhodococcus erythropolis SK121] Length=385 Score = 567 bits (1462), Expect = 1e-159, Method: Compositional matrix adjust. Identities = 282/379 (75%), Positives = 313/379 (83%), Gaps = 10/379 (2%) Query 43 LALDGEDVIGQARTGMGKTFAFGVPLLQRI-TSGDGTRPLTGAPRALVVVPTRELCLQVT 101 +AL G+D+IGQARTGMGKTF FGVPLL RI T+ +GT L G PRAL++VPTRELC+QV Sbjct 1 MALAGDDLIGQARTGMGKTFGFGVPLLHRIVTAENGTAVLDGTPRALIIVPTRELCIQVA 60 Query 102 DDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLD 161 DL A KYL G R L V+ IYGGRPYE QI AL+ G DVVVGTPGRLLD Sbjct 61 RDLENASKYLRVGD---------RGLQVLPIYGGRPYEAQISALQKGVDVVVGTPGRLLD 111 Query 162 LCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLA 221 L Q HL LG + VLVLDEADEMLDLGFLPDIER++ +P RQ+MLFSATMP PIITLA Sbjct 112 LANQSHLILGKVGVLVLDEADEMLDLGFLPDIERLMGMVPDKRQTMLFSATMPGPIITLA 171 Query 222 RTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKR 281 RTF+ +PTHIRAE SSAVHD T Q +YRAHALDK E+V+RVLQA RGATMIFTRTKR Sbjct 172 RTFLTQPTHIRAEEAESSAVHDRTSQHIYRAHALDKAEMVARVLQAEGRGATMIFTRTKR 231 Query 282 TAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTH 341 TAQKVAD+L ERGF+VGAVHGDLGQ+AREKALK FR G +DVLVATDVAARGIDIDDVTH Sbjct 232 TAQKVADDLAERGFSVGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDDVTH 291 Query 342 VINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYS 401 VINYQCPEDEK YVHRIGRTGRAGRTG+AVTLVDWD++PRW +ID+AL LG PDP ETYS Sbjct 292 VINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDDIPRWQLIDKALSLGIPDPVETYS 351 Query 402 NSPHLYAELAIPATAGGTV 420 +SPHLY EL+IPA A GTV Sbjct 352 SSPHLYEELSIPADAKGTV 370 >gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans CB1190] Length=621 Score = 559 bits (1440), Expect = 5e-157, Method: Compositional matrix adjust. Identities = 299/498 (61%), Positives = 350/498 (71%), Gaps = 54/498 (10%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 TFA+LGVR EIV AL E GI+R FAIQELTLPLAL GED+IGQARTG GKT FGVPLLQ Sbjct 98 TFAELGVRPEIVSALAEVGIERTFAIQELTLPLALAGEDLIGQARTGTGKTLGFGVPLLQ 157 Query 71 RIT----------SGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 RI G+ P+ALVVVPTRELC+QV DL AG+ L Sbjct 158 RIVPPAERPAATAEGEAADRTKDVPQALVVVPTRELCVQVAQDLTDAGRDLG-------- 209 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 + V +IYGGR YEPQ+ ALR G DVVVGTPGRLLDL +Q HL LG + VLVLDE Sbjct 210 ------IRVTAIYGGRAYEPQLNALRKGVDVVVGTPGRLLDLAEQRHLALGRVGVLVLDE 263 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPD+ERILR +P +RQ+MLFSATMP PII L+R F+ RPTHIRAE + Sbjct 264 ADEMLDLGFLPDVERILRMLPEERQTMLFSATMPGPIIALSRAFLNRPTHIRAEESDQGS 323 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 +H+ T+Q VYRAHA+DKVEL++RVLQA+DRG TMIF RTKRT Q+VAD+L ERGFA AV Sbjct 324 IHERTKQHVYRAHAMDKVELLTRVLQAKDRGLTMIFARTKRTVQRVADDLAERGFAAAAV 383 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ ARE+AL+AFR+G +DVLVATDVAARGID+ DVTHVINYQCPED K YVHRIGR Sbjct 384 HGDLGQGAREQALRAFRSGKVDVLVATDVAARGIDVTDVTHVINYQCPEDAKTYVHRIGR 443 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV 420 TGRAG+ GVAVTLVDWDE+PRW ++ LGLG +P ETYS S HLY +L IP A G + Sbjct 444 TGRAGKEGVAVTLVDWDEMPRWKLVSDELGLGIDEPVETYSTSDHLYTDLDIPTDATGRL 503 Query 421 GPARKSQ-----------------GRRRDTDCDGQKTAQHARNTPRRRRTRGG------- 456 +++++ GRRR+ D ++ + +R R RTRGG Sbjct 504 PLSKRTRAGLSAEYVDTEGDHQGAGRRRNRDEGARRPRKASRA---RTRTRGGVSVDAAA 560 Query 457 --KPVTGHP-GTNPISSP 471 +P G P G P S P Sbjct 561 PAQPAEGAPTGIAPSSGP 578 >gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella multipartita DSM 44233] gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM 44233] Length=586 Score = 553 bits (1426), Expect = 2e-155, Method: Compositional matrix adjust. Identities = 275/410 (68%), Positives = 322/410 (79%), Gaps = 21/410 (5%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 TFA+ GV + IV AL + GI+R FAIQ LTLP+AL G D+IGQARTGMGKT FGVPLLQ Sbjct 46 TFAEFGVDERIVTALADVGIERTFAIQALTLPIALTGSDLIGQARTGMGKTLGFGVPLLQ 105 Query 71 RITSGD-------GTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAV 123 R++ G P+ APRA+V+VPTRELC+QVT DL GK L Sbjct 106 RLSHDKAVTVDEKGKLPVGRAPRAVVMVPTRELCVQVTRDLHALGKALG----------- 154 Query 124 RRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADE 183 L+V ++YGGR YEPQI+AL+AG D+VVGTPGRLLDL GHL LGG+ VLVLDEADE Sbjct 155 ---LAVTAVYGGRAYEPQIKALQAGVDLVVGTPGRLLDLANSGHLVLGGVKVLVLDEADE 211 Query 184 MLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHD 243 MLDLGFLPD+E++L +P +Q+MLFSATMP PI+TLARTFM RP HIRAEA A+H Sbjct 212 MLDLGFLPDMEKVLDLVPTVKQTMLFSATMPGPILTLARTFMSRPMHIRAEAAAEGAMHS 271 Query 244 ATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGD 303 T QFVYRAHALDKVE+++RVLQAR RG TM+FTRTKRTA KVA++L ERGFA AVHGD Sbjct 272 TTRQFVYRAHALDKVEMLARVLQARGRGLTMVFTRTKRTAAKVAEDLEERGFAAAAVHGD 331 Query 304 LGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGR 363 LGQ ARE+AL+AFR G +DVLVATDVAARGID+DDVTHVIN+QCPE+EK YVHRIGRTGR Sbjct 332 LGQGAREQALRAFRAGKVDVLVATDVAARGIDVDDVTHVINFQCPEEEKTYVHRIGRTGR 391 Query 364 AGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIP 413 AG+TG AV+ +DWD++PRW +I+QAL L DP ETYS SPHL+AEL IP Sbjct 392 AGKTGTAVSFIDWDDIPRWQLINQALELNFNDPVETYSTSPHLFAELDIP 441 >gi|325000518|ref|ZP_08121630.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1] Length=547 Score = 552 bits (1423), Expect = 5e-155, Method: Compositional matrix adjust. Identities = 281/418 (68%), Positives = 320/418 (77%), Gaps = 24/418 (5%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 TFA+LGVR EIV AL E I R FAIQELTLPLALDGEDVIGQARTG GKT FGVP+LQ Sbjct 64 TFAELGVRPEIVSALAENDIVRTFAIQELTLPLALDGEDVIGQARTGTGKTLGFGVPMLQ 123 Query 71 RIT----------SGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDA 120 RIT G+ P+ALVVVPTRELC+QV D+A AGK L Sbjct 124 RITPPGEQPAATAEGEAADRTKDVPQALVVVPTRELCVQVARDIAAAGKNL--------- 174 Query 121 AAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDE 180 VR VV+IYGGR YEPQ+EALR G DV+VGTPGRLLDL +Q HL LG + LVLDE Sbjct 175 -GVR----VVAIYGGRAYEPQLEALRKGVDVIVGTPGRLLDLAEQRHLVLGRVKALVLDE 229 Query 181 ADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSA 240 ADEMLDLGFLPD+ERILR +P R +MLFSATMP PI+ L+R F+ RPTHIRAE + Sbjct 230 ADEMLDLGFLPDVERILRMLPEQRHTMLFSATMPGPIVQLSRAFLTRPTHIRAEEADQGS 289 Query 241 VHDATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAV 300 +H+ T+Q VYRAHA+DKVELV+RVLQA+DRG +MIFTRTKRTAQ+VAD+L ERGFA AV Sbjct 290 IHERTKQLVYRAHAMDKVELVTRVLQAKDRGLSMIFTRTKRTAQRVADDLAERGFAAAAV 349 Query 301 HGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGR 360 HGDLGQ ARE+AL+AFR +DVLVATDVAARGID+ VTHV+NYQCPED K YVHRIGR Sbjct 350 HGDLGQGAREQALRAFRAEKVDVLVATDVAARGIDVTGVTHVVNYQCPEDSKTYVHRIGR 409 Query 361 TGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGG 418 TGRAGR GVAVTLVDWDE+PRW +I + L LG P+P ETYS S HL+ +L IP + G Sbjct 410 TGRAGREGVAVTLVDWDEIPRWKLISEDLNLGMPEPVETYSTSDHLFTDLDIPTDSTG 467 >gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4] gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4] Length=522 Score = 552 bits (1422), Expect = 6e-155, Method: Compositional matrix adjust. Identities = 285/460 (62%), Positives = 339/460 (74%), Gaps = 40/460 (8%) Query 17 VRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRI-TSG 75 ++ EIV+AL E GI+ FAIQ LTLPLA+ G+D+IGQARTGMGKT FGVPLL R+ G Sbjct 1 MKPEIVKALAEAGIEHTFAIQALTLPLAMAGDDLIGQARTGMGKTLGFGVPLLHRVQVPG 60 Query 76 DGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGG 135 DGT P+ LVVVPTRELC+QV +DL AGK+L + ++IYGG Sbjct 61 DGT------PQVLVVVPTRELCIQVANDLKGAGKHLG--------------IRTLAIYGG 100 Query 136 RPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIER 195 RPYEPQIEALR G DVV+GTPGRLLDL +Q HL LG + LVLDEADEMLDLGFLPDIER Sbjct 101 RPYEPQIEALRKGVDVVIGTPGRLLDLAEQQHLVLGKIRGLVLDEADEMLDLGFLPDIER 160 Query 196 ILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHAL 255 ILR +P +RQ+MLFSATMP PIITLARTF+ +PTHIRAE + A+H+ T QFVYRAH++ Sbjct 161 ILRMVPDERQTMLFSATMPGPIITLARTFLNQPTHIRAEENDAGAIHERTAQFVYRAHSM 220 Query 256 DKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKA 315 DK EL++R LQA RG TMIF+RTKRTAQK+AD+L ERGFA AVHGDLGQ ARE+AL+A Sbjct 221 DKTELIARALQAEGRGLTMIFSRTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRA 280 Query 316 FRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVD 375 FR+G +DVLVATDVAARGIDIDDVTHVINYQCPEDEK YVHRIGRTGRAGRTGVA+TLVD Sbjct 281 FRSGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAITLVD 340 Query 376 WDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQ-GRRRDTD 434 WDE RW +I L L +P ETYS+SPHL+++L IP G + +++++ G + + Sbjct 341 WDEEARWKLISDTLNLDLAEPVETYSSSPHLFSDLGIPEGTKGRLPLSKRTRAGLSAEKE 400 Query 435 CD------------------GQKTAQHARNTPRRRRTRGG 456 D + A RN R+RTRGG Sbjct 401 EDLGGKRRGRRGSAASGPSASDEEAPRKRNRAPRKRTRGG 440 >gi|134097656|ref|YP_001103317.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133910279|emb|CAM00392.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] Length=496 Score = 543 bits (1399), Expect = 3e-152, Method: Compositional matrix adjust. Identities = 272/409 (67%), Positives = 322/409 (79%), Gaps = 21/409 (5%) Query 20 EIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRI-TSGDGT 78 EIVRALGE GI+ FAIQELTLPLAL GED+IGQARTG GKT FGVP+L R+ GDGT Sbjct 4 EIVRALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPGDGT 63 Query 79 RPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPY 138 P+ALVVVPTRELC+QV DL AGK+L + +++YGGRPY Sbjct 64 ------PQALVVVPTRELCVQVARDLTDAGKHLG--------------IRTLAVYGGRPY 103 Query 139 EPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILR 198 E QIEALR+G D+V+GTPGRLLDL +Q HL LG + LVLDEADEMLDLGFLPDIERIL Sbjct 104 EQQIEALRSGVDLVIGTPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILH 163 Query 199 QIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHALDKV 258 +P RQ+MLFSATMP PIITLARTF+ +PTHIRAE + A+H+ T+QFVYRAHA+DK Sbjct 164 MVPEQRQTMLFSATMPGPIITLARTFLRQPTHIRAEQADAGAIHERTKQFVYRAHAMDKT 223 Query 259 ELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRT 318 EL++R +QA RG +MIFTRTKRTAQK++DELTERGFA AVHGDLGQ ARE+AL+AFR+ Sbjct 224 ELIARAMQANGRGLSMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRS 283 Query 319 GGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDE 378 G +D+LVATDVAARGID+ VTHV+N QCP+DEK YVHRIGRTGRAGR GVA+TLVDWDE Sbjct 284 GKVDILVATDVAARGIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLVDWDE 343 Query 379 LPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQ 427 PRW MI LGL P+P ETYS S HL+A+L IP+ A G + +++++ Sbjct 344 EPRWKMISDTLGLDKPEPVETYSTSAHLFADLDIPSDATGRLPLSKRTR 392 >gi|291006385|ref|ZP_06564358.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] Length=467 Score = 543 bits (1398), Expect = 4e-152, Method: Compositional matrix adjust. Identities = 272/409 (67%), Positives = 322/409 (79%), Gaps = 21/409 (5%) Query 20 EIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRI-TSGDGT 78 EIVRALGE GI+ FAIQELTLPLAL GED+IGQARTG GKT FGVP+L R+ GDGT Sbjct 4 EIVRALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPGDGT 63 Query 79 RPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPY 138 P+ALVVVPTRELC+QV DL AGK+L + +++YGGRPY Sbjct 64 ------PQALVVVPTRELCVQVARDLTDAGKHLG--------------IRTLAVYGGRPY 103 Query 139 EPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILR 198 E QIEALR+G D+V+GTPGRLLDL +Q HL LG + LVLDEADEMLDLGFLPDIERIL Sbjct 104 EQQIEALRSGVDLVIGTPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILH 163 Query 199 QIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHALDKV 258 +P RQ+MLFSATMP PIITLARTF+ +PTHIRAE + A+H+ T+QFVYRAHA+DK Sbjct 164 MVPEQRQTMLFSATMPGPIITLARTFLRQPTHIRAEQADAGAIHERTKQFVYRAHAMDKT 223 Query 259 ELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRT 318 EL++R +QA RG +MIFTRTKRTAQK++DELTERGFA AVHGDLGQ ARE+AL+AFR+ Sbjct 224 ELIARAMQANGRGLSMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRS 283 Query 319 GGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDE 378 G +D+LVATDVAARGID+ VTHV+N QCP+DEK YVHRIGRTGRAGR GVA+TLVDWDE Sbjct 284 GKVDILVATDVAARGIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLVDWDE 343 Query 379 LPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQ 427 PRW MI LGL P+P ETYS S HL+A+L IP+ A G + +++++ Sbjct 344 EPRWKMISDTLGLDKPEPVETYSTSAHLFADLDIPSDATGRLPLSKRTR 392 >gi|296392647|ref|YP_003657531.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus rotundus DSM 44985] gi|296179794|gb|ADG96700.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM 44985] Length=495 Score = 527 bits (1357), Expect = 2e-147, Method: Compositional matrix adjust. Identities = 264/414 (64%), Positives = 316/414 (77%), Gaps = 12/414 (2%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 +FA+LGV EIV +L G FAIQE LPLAL G D+IGQARTGMGKT AFG+PLLQ Sbjct 9 SFAELGVHPEIVASLAAAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGIPLLQ 68 Query 71 RITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVV 130 R+ PRALVVVPTRELCLQVT+DL A K L D R +V Sbjct 69 RVAEAAAE----DIPRALVVVPTRELCLQVTNDLVDACKQL----KLSDGRPTR----IV 116 Query 131 SIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFL 190 S+YGGRPYE QI L G DVVVGTPGRLLDL +G+L+L + +LVLDEADEMLDLGFL Sbjct 117 SLYGGRPYEGQIATLEKGVDVVVGTPGRLLDLWGRGNLKLNAIRMLVLDEADEMLDLGFL 176 Query 191 PDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVY 250 PD+E+I+ ++P +Q+MLFSAT+P P++TLARTFM +PTHIRAE+ ++AVH+ T Q VY Sbjct 177 PDVEKIMAKLPTGKQTMLFSATIPGPVLTLARTFMTQPTHIRAESHDTAAVHERTTQHVY 236 Query 251 RAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLARE 310 RAHAL+K ELVSR LQA RG TMIFTRTKR+A K+ADEL ERGF+ G++HGD+ Q ARE Sbjct 237 RAHALNKDELVSRFLQAEGRGTTMIFTRTKRSAGKLADELVERGFSAGSLHGDMSQGARE 296 Query 311 KALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVA 370 +AL FR G I++LV TDVAARGIDID +THVINY CPEDEK+YVHRIGRTGRAGRTG+A Sbjct 297 EALSGFRKGKIEILVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGIA 356 Query 371 VTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPAR 424 +TLVDW++LPRW I+ ALGL +P ETYSNSPH+Y +L IP + G + PA+ Sbjct 357 ITLVDWEDLPRWEHINTALGLNHAEPPETYSNSPHIYTDLGIPEGSTGRLTPAQ 410 >gi|284992633|ref|YP_003411187.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065878|gb|ADB76816.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus DSM 43160] Length=611 Score = 525 bits (1353), Expect = 7e-147, Method: Compositional matrix adjust. Identities = 277/457 (61%), Positives = 329/457 (72%), Gaps = 30/457 (6%) Query 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71 F+ V ++V AL E GI R FAIQELTLPLAL G D+IGQARTG GKT FGVP+LQR Sbjct 110 FSDFDVHPDVVAALAEAGITRTFAIQELTLPLALAGNDLIGQARTGTGKTLGFGVPMLQR 169 Query 72 IT----SGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRL 127 + GDG P+ALVVVPTRELC+QV+ DLATAG +R + Sbjct 170 VVPPAEGGDGV------PQALVVVPTRELCVQVSRDLATAGS--------------KRGI 209 Query 128 SVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDL 187 V +IYGGR +EPQ+ AL+AG ++VVGTPGRLLDL Q+G L LG + VLVLDEADEMLDL Sbjct 210 RVQAIYGGRAFEPQVAALQAGVEIVVGTPGRLLDLAQRGDLILGKVKVLVLDEADEMLDL 269 Query 188 GFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQ 247 GFLPDIERIL +P RQ+MLFSATMP PI+TL+R+FM +PTHIRA + T Q Sbjct 270 GFLPDIERILAMVPDKRQTMLFSATMPGPIVTLSRSFMTQPTHIRAHGNDEGSTVPQTTQ 329 Query 248 FVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQL 307 F+YRAH LDK EL+SRVLQARDR M+F RTKRTAQKVADEL ERGFA AVHGDLGQ Sbjct 330 FIYRAHNLDKPELLSRVLQARDRSLVMVFCRTKRTAQKVADELVERGFAAAAVHGDLGQG 389 Query 308 AREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRT 367 ARE+AL+AFR+G +DVLVATDVAARGID+ V+HV+NYQCPEDEK Y+HRIGRTGRAG Sbjct 390 AREQALRAFRSGKVDVLVATDVAARGIDVTGVSHVVNYQCPEDEKTYLHRIGRTGRAGSE 449 Query 368 GVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQ 427 GVAVTLVDWD++PRW +I++AL L DP ETYS SP +Y++L +P G G +SQ Sbjct 450 GVAVTLVDWDDIPRWQLINKALELDFTDPPETYSTSPWVYSDLDVPE---GATGRLPRSQ 506 Query 428 GRRRDTDCDGQKTAQHARNTPRRRRTRGGKPVTGHPG 464 R D + T + T +R R+ GG + PG Sbjct 507 RTREGLDAE---TVEDLGETGKRTRSGGGPGASRGPG 540 >gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043] gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM 43043] Length=562 Score = 524 bits (1350), Expect = 1e-146, Method: Compositional matrix adjust. Identities = 264/435 (61%), Positives = 320/435 (74%), Gaps = 23/435 (5%) Query 2 TAVKHTTESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKT 61 T+ H E TFA V EI+ AL E GI PF IQ +TLP+AL G D+IGQA+TG GKT Sbjct 7 TSHPHAPEITFADFPVHPEIISALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGKT 66 Query 62 FAFGVPLLQRITS----GDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDT 117 FGVP+L + + G P G P+AL V PTREL +QV+ DL AG++ Sbjct 67 LGFGVPMLNSVVAPGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRH------- 119 Query 118 DDAAAVRRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLV 177 R + V+++YGGR YEPQ++ALR G +VVVGTPGRL+DL +QGHL L V+V Sbjct 120 -------RGIRVLTVYGGRAYEPQVDALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVV 172 Query 178 LDEADEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPH 237 LDEADEMLDLGFLPD+E ++ PA RQ+MLFSATMP I+TLAR +M +PTHIRA Sbjct 173 LDEADEMLDLGFLPDVETLMSLTPASRQTMLFSATMPGAIVTLARRYMTQPTHIRAMGDE 232 Query 238 SSAVH--DATEQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGF 295 + H A EQFVYRAHALDKVE++SR+LQA+DRG T+IF+RTKRTA KVADEL ERGF Sbjct 233 NENAHTVKAVEQFVYRAHALDKVEMLSRMLQAKDRGLTIIFSRTKRTAAKVADELGERGF 292 Query 296 AVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYV 355 A A+HGDLGQ ARE+AL+AFR G +DVLVATDVAARGID+D+VTHVIN+QCPEDEK Y+ Sbjct 293 AAAAIHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVDNVTHVINFQCPEDEKTYL 352 Query 356 HRIGRTGRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPAT 415 HRIGRT RAG TGVAVT VDWD+L RW++I++ L LG P+P ETYSNS HLY +L IPA Sbjct 353 HRIGRTARAGNTGVAVTFVDWDDLHRWALINKTLDLGIPEPQETYSNSEHLYGDLGIPAE 412 Query 416 AGGTVGPARKSQGRR 430 A G + R+S+ R Sbjct 413 AKGFL---RRSEQTR 424 >gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185] gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185] Length=537 Score = 520 bits (1340), Expect = 2e-145, Method: Compositional matrix adjust. Identities = 260/428 (61%), Positives = 324/428 (76%), Gaps = 22/428 (5%) Query 9 ESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPL 68 E TFA G+ +IV AL E+GI PF IQ +TLP+AL G D+IGQARTG GKT FGVPL Sbjct 31 EQTFADFGIHPDIVAALEEKGIVHPFPIQAMTLPVALSGHDIIGQARTGTGKTLGFGVPL 90 Query 69 LQRITS-GDGTRPLT----GAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAV 123 L R+T+ G+ ++ G P+A+VVVPTREL +QV DL +AAA Sbjct 91 LSRVTAPGETSKAAVPAPEGKPQAMVVVPTRELAVQVASDL--------------EAAAK 136 Query 124 RRRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADE 183 +R + + IYGGR +EPQ+E L G +V+VGTPGR++DL +GHL L + LVLDEADE Sbjct 137 KRGIRIAQIYGGRAFEPQVERLEKGVEVIVGTPGRIIDLATRGHLDLAYVGCLVLDEADE 196 Query 184 MLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHD 243 MLDLGFLPD+E+IL P RQ+MLFSATMP ++TLAR +M +PTHIRA +S Sbjct 197 MLDLGFLPDVEKILAMTPGGRQTMLFSATMPGAVVTLARRYMTQPTHIRAMQDDASEAET 256 Query 244 AT--EQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVH 301 A+ EQFVYRAHA+DKVE+++R+LQA+DRG T+IF+RTKRTA KV+DEL RGFA +H Sbjct 257 ASNIEQFVYRAHAMDKVEMLARILQAKDRGLTIIFSRTKRTAAKVSDELISRGFAAAPLH 316 Query 302 GDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRT 361 GDLGQ ARE+AL+AFR+G +DVLVATDVAARGID++DVTHVINYQCPEDEK YVHRIGRT Sbjct 317 GDLGQGAREQALRAFRSGKVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYVHRIGRT 376 Query 362 GRAGRTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTV- 420 GRAG+TG+AVTLVDWD+L RW++I++AL LG P+P ETYS+S HL+ +L IPA A G++ Sbjct 377 GRAGKTGIAVTLVDWDDLHRWALINKALDLGIPEPEETYSSSEHLFEDLEIPANATGSLP 436 Query 421 GPARKSQG 428 AR QG Sbjct 437 KSARTRQG 444 >gi|317507502|ref|ZP_07965226.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974] gi|316254189|gb|EFV13535.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974] Length=403 Score = 520 bits (1340), Expect = 2e-145, Method: Compositional matrix adjust. Identities = 264/412 (65%), Positives = 310/412 (76%), Gaps = 12/412 (2%) Query 20 EIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTR 79 EIV +L E G FAIQE LPLAL G D+IGQARTGMGKT AFGVPLLQR+ Sbjct 4 EIVASLAEAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGVPLLQRVAEAQAE- 62 Query 80 PLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYE 139 +PRALVVVPTRELCLQVT+DLA A K L A R +VS+YGGRPYE Sbjct 63 ---DSPRALVVVPTRELCLQVTNDLAEASKQLKL--------ADGRPTRIVSLYGGRPYE 111 Query 140 PQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 199 QI L+ G DVVVGTPGRLLDL +G L+L + +LVLDEADEMLDLGFLPD+E+I+ + Sbjct 112 GQIATLQKGVDVVVGTPGRLLDLWSRGDLKLNAIRMLVLDEADEMLDLGFLPDVEKIMAK 171 Query 200 IPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHALDKVE 259 +P +Q+MLFSAT+P P++TLARTFM +PTHIRAE + VH+ T Q VYRAHAL+K E Sbjct 172 LPTGKQTMLFSATIPGPVLTLARTFMTQPTHIRAEGGDLAPVHERTTQHVYRAHALNKDE 231 Query 260 LVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTG 319 LVSR LQA RG TMIFTRTKR+A K+A+ELT RGF G++HGD+ Q ARE+AL FR G Sbjct 232 LVSRFLQAEGRGTTMIFTRTKRSAGKLAEELTLRGFNAGSLHGDMSQGAREEALSGFRKG 291 Query 320 GIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDEL 379 I++LV TDVAARGIDID +THVINY CPEDEK+YVHRIGRTGRAGRTG A+TLVDW++L Sbjct 292 KIEILVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGNAITLVDWEDL 351 Query 380 PRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARKSQGRRR 431 PRW I+ ALGL DP ETYSNSPH+Y +L IP A G VG A + + R+ Sbjct 352 PRWEYINTALGLAFADPPETYSNSPHIYTDLGIPEGATGRVGSAARPKAERQ 403 >gi|334336351|ref|YP_004541503.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225] gi|334106719|gb|AEG43609.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225] Length=560 Score = 519 bits (1336), Expect = 6e-145, Method: Compositional matrix adjust. Identities = 258/422 (62%), Positives = 313/422 (75%), Gaps = 20/422 (4%) Query 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70 +FA GVR EIV AL E GI PF IQ +TLP+AL G D+IGQA+TG GKT FGVPLL Sbjct 41 SFADFGVRPEIVEALAESGITHPFPIQAMTLPVALQGHDIIGQAKTGTGKTLGFGVPLLH 100 Query 71 RITS----GDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRR 126 R+ + G P G P+A+VV PTREL +QV +DLATA K +R Sbjct 101 RVVAPGEPGYDDLPAPGKPQAIVVTPTRELAVQVANDLATASK--------------KRS 146 Query 127 LSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLD 186 + +V IYGGR YEPQI+AL+AG +VVVGTPGR++DL QGHL L + +VLDEADEMLD Sbjct 147 VRIVQIYGGRAYEPQIDALKAGCEVVVGTPGRMVDLLNQGHLNLTRAATVVLDEADEMLD 206 Query 187 LGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSS-AVHDAT 245 LGFLPD+E+IL + PA R +MLFSATMP P++++AR +M +PTHIRA P A T Sbjct 207 LGFLPDVEKILSRTPAVRHTMLFSATMPGPVVSMARRYMSQPTHIRAADPDDQGATVKNT 266 Query 246 EQFVYRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLG 305 Q VYRAHALDK+E+++R+LQA RG T++F RTKRTA KV+DEL +RGFA GA+HGDLG Sbjct 267 RQVVYRAHALDKIEVLARILQADGRGRTIVFARTKRTAAKVSDELRDRGFAAGAIHGDLG 326 Query 306 QLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAG 365 Q ARE+AL+AFR G IDVLVATDVAARGID++DVTHV+NYQCPEDE+ Y+HRIGRTGRAG Sbjct 327 QGAREQALRAFRHGHIDVLVATDVAARGIDVEDVTHVVNYQCPEDERTYLHRIGRTGRAG 386 Query 366 RTGVAVTLVDWDELPRWSMIDQALGLGSPDPAETYSNSPHLYAELAIPATAGGTVGPARK 425 G AVT VDWD++PRW +ID+ L LG P+P ETYS SPHLY +L IP G + P K Sbjct 387 NKGTAVTFVDWDDVPRWQLIDRTLDLGHPEPVETYSTSPHLYTDLGIPEGTKGRL-PKEK 445 Query 426 SQ 427 Q Sbjct 446 QQ 447 Lambda K H 0.318 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1159267309268 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40