BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3217c
Length=143
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610353|ref|NP_217733.1| integral membrane protein [Mycobact... 261 3e-68
gi|148824416|ref|YP_001289170.1| integral membrane protein [Myco... 260 6e-68
gi|254365843|ref|ZP_04981888.1| conserved integral membrane prot... 247 4e-64
gi|254552317|ref|ZP_05142764.1| hypothetical protein Mtube_18003... 246 9e-64
gi|167966996|ref|ZP_02549273.1| conserved integral membrane prot... 224 3e-57
gi|240172116|ref|ZP_04750775.1| putative integral membrane prote... 189 2e-46
gi|41409416|ref|NP_962252.1| hypothetical protein MAP3318c [Myco... 166 8e-40
gi|118464623|ref|YP_883312.1| hypothetical protein MAV_4164 [Myc... 165 2e-39
gi|254776604|ref|ZP_05218120.1| hypothetical protein MaviaA2_183... 164 4e-39
gi|15827352|ref|NP_301615.1| hypothetical protein ML0806 [Mycoba... 161 3e-38
gi|183981363|ref|YP_001849654.1| hypothetical protein MMAR_1340 ... 160 5e-38
gi|118618021|ref|YP_906353.1| hypothetical protein MUL_2539 [Myc... 159 9e-38
gi|342861175|ref|ZP_08717824.1| hypothetical protein MCOL_19927 ... 153 8e-36
gi|296169006|ref|ZP_06850672.1| membrane protein [Mycobacterium ... 150 7e-35
gi|169630618|ref|YP_001704267.1| hypothetical protein MAB_3537c ... 139 1e-31
gi|254819133|ref|ZP_05224134.1| hypothetical protein MintA_04364... 133 1e-29
gi|108798356|ref|YP_638553.1| hypothetical protein Mmcs_1385 [My... 126 1e-27
gi|126434021|ref|YP_001069712.1| hypothetical protein Mjls_1419 ... 124 4e-27
gi|312140649|ref|YP_004007985.1| integral membrane protein [Rhod... 109 2e-22
gi|226305679|ref|YP_002765639.1| hypothetical protein RER_21920 ... 108 3e-22
gi|54026551|ref|YP_120793.1| hypothetical protein nfa45780 [Noca... 103 6e-21
gi|111023310|ref|YP_706282.1| hypothetical protein RHA1_ro06347 ... 103 1e-20
gi|229489459|ref|ZP_04383322.1| conserved hypothetical protein [... 101 4e-20
gi|118471117|ref|YP_886289.1| membrane protein [Mycobacterium sm... 97.1 8e-19
gi|120402784|ref|YP_952613.1| putative integral membrane protein... 95.5 2e-18
gi|326383295|ref|ZP_08204983.1| hypothetical protein SCNU_10174 ... 95.5 2e-18
gi|226365817|ref|YP_002783600.1| hypothetical protein ROP_64080 ... 93.6 9e-18
gi|262203396|ref|YP_003274604.1| hypothetical protein Gbro_3518 ... 90.1 1e-16
gi|343927607|ref|ZP_08767075.1| hypothetical protein GOALK_097_0... 86.3 1e-15
gi|315445557|ref|YP_004078436.1| hypothetical protein Mspyr1_401... 83.6 1e-14
gi|145225260|ref|YP_001135938.1| hypothetical protein Mflv_4682 ... 83.2 1e-14
gi|237786053|ref|YP_002906758.1| hypothetical protein ckrop_1486... 82.0 3e-14
gi|340795115|ref|YP_004760578.1| hypothetical protein CVAR_2155 ... 77.4 7e-13
gi|38233321|ref|NP_939088.1| hypothetical protein DIP0715 [Coryn... 76.6 1e-12
gi|296138840|ref|YP_003646083.1| hypothetical protein Tpau_1112 ... 73.9 8e-12
gi|300789785|ref|YP_003770076.1| integral membrane protein [Amyc... 73.2 1e-11
gi|324998113|ref|ZP_08119225.1| integral membrane protein [Pseud... 68.9 2e-10
gi|331698902|ref|YP_004335141.1| hypothetical protein Psed_5151 ... 68.9 2e-10
gi|334563625|ref|ZP_08516616.1| hypothetical protein CbovD2_0354... 65.9 2e-09
gi|172040177|ref|YP_001799891.1| hypothetical protein cur_0497 [... 64.3 5e-09
gi|317507497|ref|ZP_07965222.1| formate-tetrahydrofolate ligase ... 63.9 8e-09
gi|134102858|ref|YP_001108519.1| integral membrane protein [Sacc... 63.5 9e-09
gi|333921428|ref|YP_004495009.1| hypothetical protein AS9A_3771 ... 63.2 1e-08
gi|337290205|ref|YP_004629226.1| hypothetical protein CULC22_005... 62.8 1e-08
gi|259506521|ref|ZP_05749423.1| membrane protein [Corynebacteriu... 60.8 7e-08
gi|25027340|ref|NP_737394.1| hypothetical protein CE0784 [Coryne... 60.8 7e-08
gi|19551995|ref|NP_599997.1| hypothetical protein NCgl0735 [Cory... 57.8 5e-07
gi|296270866|ref|YP_003653498.1| hypothetical protein Tbis_2906 ... 57.0 9e-07
gi|300857953|ref|YP_003782936.1| hypothetical protein cpfrc_0053... 56.6 1e-06
gi|256380277|ref|YP_003103937.1| hypothetical protein Amir_6287 ... 56.2 1e-06
>gi|15610353|ref|NP_217733.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|31794395|ref|NP_856888.1| integral membrane protein [Mycobacterium bovis AF2122/97]
gi|121639104|ref|YP_979328.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
59 more sequence titles
Length=143
Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 1 VPVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVL 60
+PVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVL
Sbjct 1 MPVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVL 60
Query 61 AAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPS 120
AAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPS
Sbjct 61 AAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPS 120
Query 121 IRWAAGRDQRGAASAANRGPDSR 143
IRWAAGRDQRGAASAANRGPDSR
Sbjct 121 IRWAAGRDQRGAASAANRGPDSR 143
>gi|148824416|ref|YP_001289170.1| integral membrane protein [Mycobacterium tuberculosis F11]
gi|253800256|ref|YP_003033257.1| hypothetical protein TBMG_03262 [Mycobacterium tuberculosis KZN
1435]
gi|289555493|ref|ZP_06444703.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
7 more sequence titles
Length=143
Score = 260 bits (664), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 141/143 (99%), Positives = 142/143 (99%), Gaps = 0/143 (0%)
Query 1 VPVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVL 60
+PVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAG DQHIVNGLGTAGWFVLVGGAVL
Sbjct 1 MPVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGTDQHIVNGLGTAGWFVLVGGAVL 60
Query 61 AAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPS 120
AAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPS
Sbjct 61 AAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPS 120
Query 121 IRWAAGRDQRGAASAANRGPDSR 143
IRWAAGRDQRGAASAANRGPDSR
Sbjct 121 IRWAAGRDQRGAASAANRGPDSR 143
>gi|254365843|ref|ZP_04981888.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|294993844|ref|ZP_06799535.1| putative integral membrane protein [Mycobacterium tuberculosis
210]
gi|134151356|gb|EBA43401.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|339296048|gb|AEJ48159.1| conserved integral membrane protein [Mycobacterium tuberculosis
CCDC5079]
gi|339299658|gb|AEJ51768.1| conserved integral membrane protein [Mycobacterium tuberculosis
CCDC5180]
Length=135
Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/135 (99%), Positives = 135/135 (100%), Gaps = 0/135 (0%)
Query 9 VRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAV 68
+RGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAV
Sbjct 1 MRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAV 60
Query 69 GKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRD 128
GKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRD
Sbjct 61 GKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRD 120
Query 129 QRGAASAANRGPDSR 143
QRGAASAANRGPDSR
Sbjct 121 QRGAASAANRGPDSR 135
>gi|254552317|ref|ZP_05142764.1| hypothetical protein Mtube_18003 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|297635866|ref|ZP_06953646.1| hypothetical protein MtubK4_17162 [Mycobacterium tuberculosis
KZN 4207]
gi|297732863|ref|ZP_06961981.1| hypothetical protein MtubKR_17317 [Mycobacterium tuberculosis
KZN R506]
Length=135
Score = 246 bits (627), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 133/135 (99%), Positives = 134/135 (99%), Gaps = 0/135 (0%)
Query 9 VRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAV 68
+RGAGLIVAVQGGAALVVAAALLVRGLAG DQHIVNGLGTAGWFVLVGGAVLAAGCRLAV
Sbjct 1 MRGAGLIVAVQGGAALVVAAALLVRGLAGTDQHIVNGLGTAGWFVLVGGAVLAAGCRLAV 60
Query 69 GKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRD 128
GKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRD
Sbjct 61 GKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRD 120
Query 129 QRGAASAANRGPDSR 143
QRGAASAANRGPDSR
Sbjct 121 QRGAASAANRGPDSR 135
>gi|167966996|ref|ZP_02549273.1| conserved integral membrane protein [Mycobacterium tuberculosis
H37Ra]
Length=124
Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/123 (99%), Positives = 121/123 (99%), Gaps = 0/123 (0%)
Query 21 GAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAVGKLWGRGLAVFA 80
G LVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAVGKLWGRGLAVFA
Sbjct 2 GPPLVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAVGKLWGRGLAVFA 61
Query 81 QLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRDQRGAASAANRGP 140
QLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRDQRGAASAANRGP
Sbjct 62 QLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRDQRGAASAANRGP 121
Query 141 DSR 143
DSR
Sbjct 122 DSR 124
>gi|240172116|ref|ZP_04750775.1| putative integral membrane protein [Mycobacterium kansasii ATCC
12478]
Length=135
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/135 (74%), Positives = 111/135 (83%), Gaps = 0/135 (0%)
Query 9 VRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAV 68
+RGAGLIV VQG AALV AA L+VRGLAGADQH+VNGLGTA WFVL+GG VLA G L +
Sbjct 1 MRGAGLIVVVQGTAALVTAAVLVVRGLAGADQHVVNGLGTAVWFVLIGGGVLAGGSALVL 60
Query 69 GKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRD 128
GK WGRG+AVF QLLLLPVAWYL VGS QPA GIP+ I+AL +LVLLFSPP++RW AG D
Sbjct 61 GKRWGRGVAVFTQLLLLPVAWYLSVGSRQPAFGIPLAIVALTILVLLFSPPTLRWVAGSD 120
Query 129 QRGAASAANRGPDSR 143
RG A+A GPDSR
Sbjct 121 HRGPANATKPGPDSR 135
>gi|41409416|ref|NP_962252.1| hypothetical protein MAP3318c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398247|gb|AAS05868.1| hypothetical protein MAP_3318c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336459514|gb|EGO38451.1| hypothetical protein MAPs_02420 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=163
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 101/139 (73%), Positives = 111/139 (80%), Gaps = 1/139 (0%)
Query 5 APAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGC 64
AP AVR AGLIV +QG AALVVA L+VRG+AGADQH+VNGL TAGWFVLVG AV+ AG
Sbjct 26 APTAVRRAGLIVLLQGVAALVVAVVLVVRGIAGADQHVVNGLATAGWFVLVGAAVIGAGR 85
Query 65 RLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWA 124
L GK WGRGLAV QLLLLPVAWYL VGSHQP GIP G +AL VL LLFSP ++RWA
Sbjct 86 ALTRGKRWGRGLAVITQLLLLPVAWYLAVGSHQPGFGIPAGAVALVVLGLLFSPAAVRWA 145
Query 125 AGRDQRGAASAANRGPDSR 143
AG Q +AS+ANRGPDSR
Sbjct 146 AG-GQDDSASSANRGPDSR 163
>gi|118464623|ref|YP_883312.1| hypothetical protein MAV_4164 [Mycobacterium avium 104]
gi|118165910|gb|ABK66807.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=143
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/139 (73%), Positives = 111/139 (80%), Gaps = 1/139 (0%)
Query 5 APAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGC 64
AP AVR AGLIV +QG AALVVA L+VRG+AGADQH+VNGL TAGWFVLVG AV+ AG
Sbjct 6 APTAVRRAGLIVLLQGVAALVVAVVLVVRGIAGADQHVVNGLATAGWFVLVGAAVIGAGR 65
Query 65 RLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWA 124
L GK WGRGLAV QLLLLPVAWYL VGSHQP GIP G +AL VL LLFSP ++RWA
Sbjct 66 ALTRGKRWGRGLAVITQLLLLPVAWYLAVGSHQPGFGIPAGAVALVVLGLLFSPAAVRWA 125
Query 125 AGRDQRGAASAANRGPDSR 143
AG Q +AS+ANRGPDSR
Sbjct 126 AG-GQDDSASSANRGPDSR 143
>gi|254776604|ref|ZP_05218120.1| hypothetical protein MaviaA2_18316 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=143
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/139 (72%), Positives = 110/139 (80%), Gaps = 1/139 (0%)
Query 5 APAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGC 64
AP VR AGLIV +QG AALVVA L+VRG+AGADQH+VNGL TAGWFVLVG AV+ AG
Sbjct 6 APTTVRRAGLIVLLQGVAALVVAVVLVVRGIAGADQHVVNGLATAGWFVLVGAAVIGAGR 65
Query 65 RLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWA 124
L GK WGRGLAV QLLLLPVAWYL VGSHQP GIP G +AL VL LLFSP ++RWA
Sbjct 66 ALTRGKRWGRGLAVITQLLLLPVAWYLAVGSHQPGFGIPAGAVALVVLGLLFSPAAVRWA 125
Query 125 AGRDQRGAASAANRGPDSR 143
AG Q +AS+ANRGPDSR
Sbjct 126 AG-GQDDSASSANRGPDSR 143
>gi|15827352|ref|NP_301615.1| hypothetical protein ML0806 [Mycobacterium leprae TN]
gi|221229830|ref|YP_002503246.1| hypothetical protein MLBr_00806 [Mycobacterium leprae Br4923]
gi|13092901|emb|CAC30316.1| putative membrane protein [Mycobacterium leprae]
gi|219932937|emb|CAR70901.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=173
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/140 (78%), Positives = 118/140 (85%), Gaps = 0/140 (0%)
Query 4 RAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAG 63
RAPAAVRGAGLIV VQG ALVVAAAL+VRGL GADQ IVNGLGTA WFV+VG AVLAAG
Sbjct 34 RAPAAVRGAGLIVVVQGAVALVVAAALVVRGLTGADQRIVNGLGTAIWFVVVGVAVLAAG 93
Query 64 CRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRW 123
C L VGK WGRGLAVF QLLLLPVAWYL+VGSHQ A G P+GI+AL L+LLFSPP++RW
Sbjct 94 CALLVGKRWGRGLAVFTQLLLLPVAWYLVVGSHQSAFGFPMGIVALIALILLFSPPAVRW 153
Query 124 AAGRDQRGAASAANRGPDSR 143
+AG QR AS+ANR DSR
Sbjct 154 SAGAYQRSVASSANRKADSR 173
>gi|183981363|ref|YP_001849654.1| hypothetical protein MMAR_1340 [Mycobacterium marinum M]
gi|183174689|gb|ACC39799.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=143
Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/141 (71%), Positives = 111/141 (79%), Gaps = 0/141 (0%)
Query 3 VRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAA 62
V AP +RGAG++VAVQG A L+VAA L VRGLAGADQ +VNGLGTA WFVL+G AVLAA
Sbjct 3 VPAPTPIRGAGVVVAVQGAAGLIVAAVLAVRGLAGADQRLVNGLGTAVWFVLIGAAVLAA 62
Query 63 GCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIR 122
GC L G+ WGRGLAV QLLLLPVAWYL SHQP GIP+G +AL VL+LLFSPPS+R
Sbjct 63 GCALVAGRRWGRGLAVVTQLLLLPVAWYLTADSHQPVFGIPLGAVALTVLLLLFSPPSLR 122
Query 123 WAAGRDQRGAASAANRGPDSR 143
WA DQRG ASA GPDSR
Sbjct 123 WAGAGDQRGPASATKSGPDSR 143
>gi|118618021|ref|YP_906353.1| hypothetical protein MUL_2539 [Mycobacterium ulcerans Agy99]
gi|118570131|gb|ABL04882.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=143
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 100/141 (71%), Positives = 110/141 (79%), Gaps = 0/141 (0%)
Query 3 VRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAA 62
V AP +RGAG++VAVQG A L+VAA L VRGLAGADQ VNGLGTA WFVL+G AVLAA
Sbjct 3 VPAPTPIRGAGVVVAVQGTAGLIVAAVLAVRGLAGADQRQVNGLGTAVWFVLIGAAVLAA 62
Query 63 GCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIR 122
GC L G+ WGRGLAV QLLLLPVAWYL SHQP GIP+G +AL VL+LLFSPPS+R
Sbjct 63 GCALVAGRRWGRGLAVVTQLLLLPVAWYLTTDSHQPVFGIPLGAVALTVLLLLFSPPSLR 122
Query 123 WAAGRDQRGAASAANRGPDSR 143
WA DQRG ASA GPDSR
Sbjct 123 WAGAGDQRGPASATKSGPDSR 143
>gi|342861175|ref|ZP_08717824.1| hypothetical protein MCOL_19927 [Mycobacterium colombiense CECT
3035]
gi|342131619|gb|EGT84889.1| hypothetical protein MCOL_19927 [Mycobacterium colombiense CECT
3035]
Length=143
Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 96/143 (68%), Positives = 108/143 (76%), Gaps = 1/143 (0%)
Query 1 VPVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVL 60
P AP VR AG IV +QG AAL+VA L+VRG+AGA+Q +VNGL TAGWFVLVG V+
Sbjct 2 TPPAAPTPVRRAGQIVVLQGIAALIVAVVLVVRGIAGANQQVVNGLATAGWFVLVGAGVI 61
Query 61 AAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPS 120
AAG L +GK WGRGLAV QLLLLPVAWYL VGSHQP GIPVG +AL VL LLFSP +
Sbjct 62 AAGRALILGKRWGRGLAVITQLLLLPVAWYLAVGSHQPGFGIPVGALALIVLGLLFSPAA 121
Query 121 IRWAAGRDQRGAASAANRGPDSR 143
+RWAAG DQ +A AN PDSR
Sbjct 122 VRWAAG-DQGDSARPANGAPDSR 143
>gi|296169006|ref|ZP_06850672.1| membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896348|gb|EFG76004.1| membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=162
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/150 (65%), Positives = 111/150 (74%), Gaps = 9/150 (6%)
Query 2 PVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGW--------FV 53
P AP AVRGAGL+VA QG AALVVA L+VRG+AGADQH+VNG +GW FV
Sbjct 14 PGAAPTAVRGAGLLVAAQGVAALVVAVVLVVRGIAGADQHVVNGSPASGWYAQGTTVFFV 73
Query 54 LVGGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLV 113
L G VLAAG L +GK WGRGLAV +LLLLPVAWYL V SH+P GIP ++AL VL
Sbjct 74 LAGAGVLAAGRALTLGKRWGRGLAVITELLLLPVAWYLTVDSHRPGFGIPAAVVALAVLG 133
Query 114 LLFSPPSIRWAAGRDQRGAASAANRGPDSR 143
LLFSP +RWAAG DQR +A++ANRGPDSR
Sbjct 134 LLFSPAGVRWAAG-DQRDSANSANRGPDSR 162
>gi|169630618|ref|YP_001704267.1| hypothetical protein MAB_3537c [Mycobacterium abscessus ATCC
19977]
gi|169242585|emb|CAM63613.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=135
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/135 (58%), Positives = 95/135 (71%), Gaps = 1/135 (0%)
Query 1 VPVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVL 60
+ AP VR AG+IVA +G LV+A L+VR +GADQH+VNG GTA WF + G AVL
Sbjct 1 MTTTAPNTVRRAGMIVAGEGAVGLVIALVLVVRAASGADQHVVNGYGTAAWFSVFGTAVL 60
Query 61 AAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPS 120
AAG L G+ WGRG+AV QLLLLPVAWY VGSHQ A+G+P+ I+A+ LVLLFSP +
Sbjct 61 AAGLALISGRRWGRGIAVMMQLLLLPVAWYAAVGSHQLALGVPLAIVAVAALVLLFSPTA 120
Query 121 IRWAAGRDQRGAASA 135
WA G D+ GA +
Sbjct 121 QMWAGG-DEAGADES 134
>gi|254819133|ref|ZP_05224134.1| hypothetical protein MintA_04364 [Mycobacterium intracellulare
ATCC 13950]
Length=122
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/111 (72%), Positives = 88/111 (80%), Gaps = 1/111 (0%)
Query 33 RGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLI 92
RG+AGADQH+ NGL TAGWFVLVG V+AAG L +GK WGRGLAV QLLLLPVAWYL
Sbjct 13 RGIAGADQHVANGLATAGWFVLVGAGVIAAGRALMLGKRWGRGLAVITQLLLLPVAWYLA 72
Query 93 VGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRDQRGAASAANRGPDSR 143
VGSHQP GIP G++AL VL LLFSP ++RWAAG Q +AS ANR PDSR
Sbjct 73 VGSHQPGYGIPAGLVALVVLGLLFSPAAVRWAAG-GQGDSASPANRDPDSR 122
>gi|108798356|ref|YP_638553.1| hypothetical protein Mmcs_1385 [Mycobacterium sp. MCS]
gi|119867453|ref|YP_937405.1| hypothetical protein Mkms_1403 [Mycobacterium sp. KMS]
gi|108768775|gb|ABG07497.1| putative conserved integral membrane protein [Mycobacterium sp.
MCS]
gi|119693542|gb|ABL90615.1| putative conserved integral membrane protein [Mycobacterium sp.
KMS]
Length=140
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/143 (54%), Positives = 99/143 (70%), Gaps = 3/143 (2%)
Query 1 VPVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVL 60
+PV AP+ VR A ++VA++G +V A LV G + A++ +N GTA WF +VGG VL
Sbjct 1 MPVPAPSTVRQAAVLVALEGATGVVAALVYLVSGFSRAEEAGLNKFGTAAWFAIVGGGVL 60
Query 61 AAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPS 120
AAG L G+ WGRG+AVFAQLLLLPV WY+ VGSHQ GIPV ++AL L+LLFSP +
Sbjct 61 AAGWALWTGRRWGRGIAVFAQLLLLPVTWYVAVGSHQWFYGIPVAVVALTALLLLFSPSA 120
Query 121 IRWAAGRDQRGAASAANRGPDSR 143
++W +D ASA N GPD+R
Sbjct 121 LQWLGAQDP---ASADNSGPDTR 140
>gi|126434021|ref|YP_001069712.1| hypothetical protein Mjls_1419 [Mycobacterium sp. JLS]
gi|126233821|gb|ABN97221.1| putative conserved integral membrane protein [Mycobacterium sp.
JLS]
Length=140
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/143 (52%), Positives = 98/143 (69%), Gaps = 3/143 (2%)
Query 1 VPVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVL 60
+PV AP+ VR A ++VA++G +V A L+ G + A++ +N GTA WF +VG VL
Sbjct 1 MPVPAPSTVRQAAVLVALEGATGVVAALVYLISGFSRAEEAGLNKFGTAAWFAIVGSGVL 60
Query 61 AAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPS 120
AAG L G+ WGRG+AVFAQLLLLPV WY+ VGSHQ GIPV ++AL L+LLFSP +
Sbjct 61 AAGWALWTGRRWGRGIAVFAQLLLLPVTWYVAVGSHQWFYGIPVAVVALTALLLLFSPSA 120
Query 121 IRWAAGRDQRGAASAANRGPDSR 143
++W +D ASA N GPD+R
Sbjct 121 LQWLGAQDP---ASADNSGPDTR 140
>gi|312140649|ref|YP_004007985.1| integral membrane protein [Rhodococcus equi 103S]
gi|325675722|ref|ZP_08155406.1| integral membrane protein [Rhodococcus equi ATCC 33707]
gi|311889988|emb|CBH49306.1| putative integral membrane protein [Rhodococcus equi 103S]
gi|325553693|gb|EGD23371.1| integral membrane protein [Rhodococcus equi ATCC 33707]
Length=140
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/124 (50%), Positives = 85/124 (69%), Gaps = 1/124 (0%)
Query 2 PVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLA 61
P P+ VR AG++VA++G A+ A L+VRGL GADQ + +G GTA WF+++GGAVLA
Sbjct 7 PTPTPSTVRRAGVLVALEGAVAVGFAIFLVVRGLLGADQSVTSGYGTAAWFLILGGAVLA 66
Query 62 AGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSI 121
AG L G+ WGR +A+ AQLLLLPV WY++ SH+ G+ +G + L L +LF+ +
Sbjct 67 AGVALLRGQRWGRTIALMAQLLLLPVTWYVLT-SHRWFWGVLLGAVVLAALAMLFAGSTS 125
Query 122 RWAA 125
RW A
Sbjct 126 RWMA 129
>gi|226305679|ref|YP_002765639.1| hypothetical protein RER_21920 [Rhodococcus erythropolis PR4]
gi|226184796|dbj|BAH32900.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length=156
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/126 (50%), Positives = 77/126 (62%), Gaps = 0/126 (0%)
Query 2 PVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLA 61
P P V AG +V +QG A A ++RG G DQ + NG G A W ++GGAVLA
Sbjct 7 PNALPKTVTWAGALVTLQGLVAAGFAIVAVIRGATGHDQSVTNGYGFAAWVAILGGAVLA 66
Query 62 AGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSI 121
AG L G+ WGR +AV AQLLLLPVAW L+ SHQ +GI +G++ LG L LFS P+
Sbjct 67 AGIALLTGRRWGRAIAVVAQLLLLPVAWSLLTDSHQVPLGIVLGVVVLGALGCLFSAPTS 126
Query 122 RWAAGR 127
RW A
Sbjct 127 RWMAAE 132
>gi|54026551|ref|YP_120793.1| hypothetical protein nfa45780 [Nocardia farcinica IFM 10152]
gi|54018059|dbj|BAD59429.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=144
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/128 (58%), Positives = 91/128 (72%), Gaps = 1/128 (0%)
Query 5 APAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGC 64
PA VRGAG +VA++GG A+ VA L+VRGL G DQ +G GTA WF ++GGAVLAAG
Sbjct 14 TPATVRGAGALVALEGGVAVAVAIVLVVRGLLGHDQSQASGYGTAAWFGILGGAVLAAGV 73
Query 65 RLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWA 124
L +G WGR +AV AQ+LLLPV W L+ SHQP G +G++ +G LVLLF+PPS RW
Sbjct 74 GLLLGHRWGRAIAVIAQVLLLPVVWSLLTDSHQPLWGSLLGVVVVGALVLLFAPPSNRWM 133
Query 125 AGRDQRGA 132
A +D GA
Sbjct 134 A-QDYGGA 140
>gi|111023310|ref|YP_706282.1| hypothetical protein RHA1_ro06347 [Rhodococcus jostii RHA1]
gi|110822840|gb|ABG98124.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=145
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/137 (47%), Positives = 89/137 (65%), Gaps = 2/137 (1%)
Query 5 APAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGC 64
P VR AG +V+++G A+ VA L++RGL G DQ + +G GTA WF ++GGAVLAAG
Sbjct 10 TPTTVRAAGALVSLEGAVAVGVAVVLVIRGLLGHDQSVSSGYGTAAWFAILGGAVLAAGL 69
Query 65 RLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWA 124
L G+ WGR +A+ AQLLLLPVAW L+ SHQP G+ +G++ + L LFS P+ +W
Sbjct 70 ALIFGRRWGRAIAIVAQLLLLPVAWSLLTDSHQPFFGVLLGVVVVAALGCLFSSPTSKWM 129
Query 125 AGRDQRGAASAANRGPD 141
A + G + A+ D
Sbjct 130 AA--EYGQEADADNPSD 144
>gi|229489459|ref|ZP_04383322.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229323556|gb|EEN89314.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=136
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 71/112 (64%), Gaps = 0/112 (0%)
Query 16 VAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAVGKLWGRG 75
+ +QG A A ++RG G DQ + NG G A W ++GGAVLAAG L G+ WGR
Sbjct 1 MTLQGLVAAGFAIVAVIRGATGHDQSVTNGYGFAAWVAILGGAVLAAGIALLTGRRWGRA 60
Query 76 LAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGR 127
+AV AQLLLLPVAW L+ SHQ +GI +G++ LG L LFS P+ RW A
Sbjct 61 IAVVAQLLLLPVAWSLLTDSHQVPLGIVLGVVVLGALGCLFSAPTSRWMAAE 112
>gi|118471117|ref|YP_886289.1| membrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118172404|gb|ABK73300.1| membrane protein [Mycobacterium smegmatis str. MC2 155]
Length=126
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/123 (59%), Positives = 87/123 (71%), Gaps = 1/123 (0%)
Query 6 PAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCR 65
P VR AG + A +G AALVVA LLVR + GADQ IVNG GTA WF+L+GG VLA G
Sbjct 5 PPGVRYAGFLTAAEGVAALVVAVVLLVRAIGGADQQIVNGWGTALWFILIGGGVLAGGWA 64
Query 66 LAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAA 125
L G+ WGRG+AV A LLLLPVAWY+I SH G+ +G++ALG LVLLF+P ++ W
Sbjct 65 LITGRRWGRGIAVIANLLLLPVAWYVIT-SHHIVYGVLLGLLALGTLVLLFTPSTVEWLT 123
Query 126 GRD 128
RD
Sbjct 124 HRD 126
>gi|120402784|ref|YP_952613.1| putative integral membrane protein [Mycobacterium vanbaalenii
PYR-1]
gi|119955602|gb|ABM12607.1| putative conserved integral membrane protein [Mycobacterium vanbaalenii
PYR-1]
Length=133
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/136 (47%), Positives = 84/136 (62%), Gaps = 4/136 (2%)
Query 9 VRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAV 68
+R AG I A++G LV+A L+VR AG + ++G GTA WF ++G V AAG L
Sbjct 1 MRIAGAIAALEGALGLVMAVVLVVREAAGHHEAAISGYGTAAWFAIMGSGVAAAGWALLT 60
Query 69 GKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRW-AAGR 127
G+ WGRG+AVFA L+LL VAWY + S Q + V A+ VL LLFSP ++ W R
Sbjct 61 GRRWGRGIAVFANLVLLGVAWY-VFSSGQLRYAVAVAAAAITVLGLLFSPSALHWLTQSR 119
Query 128 DQRGAASAANRGPDSR 143
D AA++ RGPD+R
Sbjct 120 DS--AANSDRRGPDTR 133
>gi|326383295|ref|ZP_08204983.1| hypothetical protein SCNU_10174 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198045|gb|EGD55231.1| hypothetical protein SCNU_10174 [Gordonia neofelifaecis NRRL
B-59395]
Length=141
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/131 (50%), Positives = 86/131 (66%), Gaps = 4/131 (3%)
Query 2 PVR----APAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGG 57
PVR P+ +R AG + AVQG L+VA L+VR AG + ++G GTA WF ++GG
Sbjct 6 PVRPALSVPSTLRWAGYVTAVQGAVGLIVAVVLVVREAAGHHEAAISGYGTAVWFTVIGG 65
Query 58 AVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFS 117
V A G L G+ WGR +++ AQ+LLLPVA+ LI GS Q G+PVG++ALGVLVLLF+
Sbjct 66 GVCAGGIALTRGRRWGRAVSLMAQILLLPVAYTLITGSGQAVFGVPVGVVALGVLVLLFA 125
Query 118 PPSIRWAAGRD 128
P S+ W D
Sbjct 126 PASLTWLNADD 136
>gi|226365817|ref|YP_002783600.1| hypothetical protein ROP_64080 [Rhodococcus opacus B4]
gi|226244307|dbj|BAH54655.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=145
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/123 (52%), Positives = 84/123 (69%), Gaps = 0/123 (0%)
Query 5 APAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGC 64
P VR AG +V+++G A+ VA L+VRGL G DQ + +G GTA WF ++GGAVLAAG
Sbjct 10 TPTTVRAAGALVSLEGAVAVGVAVVLVVRGLLGHDQSVSSGYGTAAWFAILGGAVLAAGL 69
Query 65 RLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWA 124
L G+ WGR +A+ AQLLLLPVAW L+ SHQP G+ +G++ +G L LFS P+ +W
Sbjct 70 ALIFGRRWGRAIAIVAQLLLLPVAWSLLTDSHQPFFGVLLGVVVVGALGCLFSSPTSKWM 129
Query 125 AGR 127
A
Sbjct 130 AAE 132
>gi|262203396|ref|YP_003274604.1| hypothetical protein Gbro_3518 [Gordonia bronchialis DSM 43247]
gi|262086743|gb|ACY22711.1| hypothetical protein Gbro_3518 [Gordonia bronchialis DSM 43247]
Length=144
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/124 (53%), Positives = 86/124 (70%), Gaps = 1/124 (0%)
Query 4 RAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAG 63
R P A++ AG + AV+GG A+VVA L++RGL G + ++G GTA WF ++GG VL G
Sbjct 17 RPPTAIKVAGAVTAVEGGIAVVVAVVLVIRGLLGHEDIAISGYGTAAWFGIIGGGVLLGG 76
Query 64 CRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRW 123
L G+ WGR +A+ AQ+LLLPVA+YL SHQPA +P+G+ AL VL LFSP S+RW
Sbjct 77 VALLTGRRWGRSIAMVAQILLLPVAYYLFT-SHQPAFAVPLGLAALAVLAFLFSPASVRW 135
Query 124 AAGR 127
AG
Sbjct 136 LAGE 139
>gi|343927607|ref|ZP_08767075.1| hypothetical protein GOALK_097_00270 [Gordonia alkanivorans NBRC
16433]
gi|343762248|dbj|GAA14001.1| hypothetical protein GOALK_097_00270 [Gordonia alkanivorans NBRC
16433]
Length=162
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Query 2 PVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLA 61
P P ++ AG + V+G + VA L++RGLAG ++ ++G GTA WF ++GG VL
Sbjct 33 PSVTPTQIKVAGAVTTVEGLVGVAVAVILVIRGLAGHEETAISGYGTAIWFGIIGGGVLV 92
Query 62 AGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSI 121
G L G+ WGR +A+ AQ+LLLPVA+YL S P +P+ + A+ LV+LFSP ++
Sbjct 93 GGVALLAGRRWGRSIAMVAQILLLPVAYYLYT-SGWPVFSVPLALAAIAGLVMLFSPAAV 151
Query 122 RWAAG 126
RW AG
Sbjct 152 RWLAG 156
>gi|315445557|ref|YP_004078436.1| hypothetical protein Mspyr1_40140 [Mycobacterium sp. Spyr1]
gi|315263860|gb|ADU00602.1| hypothetical protein Mspyr1_40140 [Mycobacterium sp. Spyr1]
Length=150
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/142 (45%), Positives = 81/142 (58%), Gaps = 4/142 (2%)
Query 5 APAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGC 64
P VR AG I A++G AL++A L+VR AG + ++G GTAGWF ++G V AAG
Sbjct 10 TPRPVRLAGAIAALEGALALLMAVVLVVREAAGHHEDAISGYGTAGWFTIMGSGVAAAGW 69
Query 65 RLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWA 124
L G+ WGRG+AVFA L+LLPVAWY + S V A+ VL LFSP + W
Sbjct 70 ALWTGRRWGRGIAVFANLVLLPVAWY-VFSSGWAGYAAVVAAAAITVLAGLFSPSGLHWL 128
Query 125 AGRDQRGA---ASAANRGPDSR 143
G AS+ GPD+R
Sbjct 129 TQEPDPGTSREASSDRPGPDTR 150
>gi|145225260|ref|YP_001135938.1| hypothetical protein Mflv_4682 [Mycobacterium gilvum PYR-GCK]
gi|145217746|gb|ABP47150.1| hypothetical protein Mflv_4682 [Mycobacterium gilvum PYR-GCK]
Length=150
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/142 (45%), Positives = 81/142 (58%), Gaps = 4/142 (2%)
Query 5 APAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGC 64
P VR AG I A++G AL++A L+VR AG + ++G GTAGWF ++G V AAG
Sbjct 10 TPRPVRLAGAIAALEGALALLMAVVLVVREAAGHHEDAISGYGTAGWFTIMGSGVAAAGW 69
Query 65 RLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWA 124
L G+ WGRG+AVFA L+LLPVAWY + S V A+ VL LFSP + W
Sbjct 70 ALWTGRRWGRGIAVFANLVLLPVAWY-VFSSGWAGYAAVVAAAAITVLAGLFSPSGLHWL 128
Query 125 AGRDQRGA---ASAANRGPDSR 143
G AS+ GPD+R
Sbjct 129 TQEPDPGTSREASSDRPGPDTR 150
>gi|237786053|ref|YP_002906758.1| hypothetical protein ckrop_1486 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758965|gb|ACR18215.1| putative membrane protein [Corynebacterium kroppenstedtii DSM
44385]
Length=182
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/132 (41%), Positives = 76/132 (58%), Gaps = 11/132 (8%)
Query 6 PAAVRGAGLIVAVQGGAALVVAAALLV---RGLAGADQHIV-------NGLGTAGWFVLV 55
P+ V+ AG + ++G LV A +++ RG D + NG GTA WFV++
Sbjct 49 PSTVKWAGYVGLIEGAVGLVAAIVMVIQTARGKGDGDAKVEGVLASWGNGYGTALWFVII 108
Query 56 GGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLL 115
GAV AAG L GK WGR +LLLPVAWY++ S +P +GIP +++L L L+
Sbjct 109 FGAVAAAGWALTRGKRWGRAPVAMLNMLLLPVAWYML-SSSRPDLGIPTLLVSLVGLGLI 167
Query 116 FSPPSIRWAAGR 127
F+P ++ WAA R
Sbjct 168 FNPAAVSWAASR 179
>gi|340795115|ref|YP_004760578.1| hypothetical protein CVAR_2155 [Corynebacterium variabile DSM
44702]
gi|340535025|gb|AEK37505.1| putative membrane protein [Corynebacterium variabile DSM 44702]
Length=140
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/126 (37%), Positives = 72/126 (58%), Gaps = 1/126 (0%)
Query 2 PVRAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLA 61
P+ P +VR AG + V+GG L++A L+VR G V+G GTA WF++ GG V
Sbjct 13 PLVLPRSVRFAGWLGLVEGGIGLIIAVVLIVREANGVHNDAVSGYGTAAWFIIFGGIVAL 72
Query 62 AGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSI 121
AG L G+ WGRG ++L+ V+ Y+ S + +G+P ++ + L +LF+ ++
Sbjct 73 AGWFLKDGRRWGRGPVAMTNMILVLVSVYMF-SSGRIDLGLPTALVGVAGLAMLFNADAV 131
Query 122 RWAAGR 127
WAA R
Sbjct 132 DWAARR 137
>gi|38233321|ref|NP_939088.1| hypothetical protein DIP0715 [Corynebacterium diphtheriae NCTC
13129]
gi|38199580|emb|CAE49233.1| Putative membrane protein [Corynebacterium diphtheriae]
Length=153
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/130 (39%), Positives = 72/130 (56%), Gaps = 11/130 (8%)
Query 6 PAAVRGAGLIVAVQGGAALVVAAALLVRGLAGA-DQHIVN---------GLGTAGWFVLV 55
P +R AG+I VQ L A L++R + GA ++ IV G+GTA +FV+V
Sbjct 22 PTTIRNAGIIAIVQSAIGLGFAVFLVLRSITGAPEESIVYETDTAVTSVGVGTAIFFVIV 81
Query 56 GGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLL 115
G V+A + GK WGRG + ++LLLP+ +Y+I G H + + A+ LV L
Sbjct 82 FGTVIAGAIMMMRGKRWGRGPVIMLEILLLPIGFYMISG-HALLLAVVTCASAIATLVYL 140
Query 116 FSPPSIRWAA 125
FSP S+ WAA
Sbjct 141 FSPRSLDWAA 150
>gi|296138840|ref|YP_003646083.1| hypothetical protein Tpau_1112 [Tsukamurella paurometabola DSM
20162]
gi|296026974|gb|ADG77744.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=146
Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/123 (40%), Positives = 67/123 (55%), Gaps = 0/123 (0%)
Query 8 AVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLA 67
VR AG+IV ++G AL L+RG+ GA + G A W + +G AVLA G L
Sbjct 22 TVRAAGVIVGLEGIVALGWGVLELIRGITGAAESSRGAYGMAFWMLPIGSAVLAGGIALL 81
Query 68 VGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGR 127
GK WGR L V LLL +P +G+P+ I+A+ VL L+FSPP++ W G
Sbjct 82 QGKRWGRTLGVLTNLLLGFAGISGAFSQGRPEVGVPMIIVAVVVLGLMFSPPTVAWLEGE 141
Query 128 DQR 130
+R
Sbjct 142 YRR 144
>gi|300789785|ref|YP_003770076.1| integral membrane protein [Amycolatopsis mediterranei U32]
gi|299799299|gb|ADJ49674.1| integral membrane protein [Amycolatopsis mediterranei U32]
gi|340531453|gb|AEK46658.1| integral membrane protein [Amycolatopsis mediterranei S699]
Length=156
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/136 (39%), Positives = 72/136 (53%), Gaps = 1/136 (0%)
Query 5 APAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGC 64
AP VR AG + AV A LV +LV GL Q N +G F++V A LAA
Sbjct 6 APREVRLAGAVTAVPSLALLVFGVIVLVNGLRSPAQPGNNVFVESGTFIVVALAFLAASA 65
Query 65 RLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWA 124
L +G+ W R V L+++ + WYL+ S +PA G+PV ++ + LVLLF P+ WA
Sbjct 66 GLVLGQTWARSPGVVIALIVVGLGWYLLGPSGEPAWGVPVALLGIAALVLLFRRPARAWA 125
Query 125 AG-RDQRGAASAANRG 139
G R+ AA RG
Sbjct 126 LGLREGESETEAAERG 141
>gi|324998113|ref|ZP_08119225.1| integral membrane protein [Pseudonocardia sp. P1]
Length=141
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/123 (40%), Positives = 65/123 (53%), Gaps = 0/123 (0%)
Query 6 PAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCR 65
P VR +G++V VQG A +VV+ L VR + D GL AG F+L+ GAV G
Sbjct 16 PENVRVSGVLVGVQGLAGIVVSVVLAVRAIGAGDARGYYGLAEAGIFLLMAGAVAGIGYG 75
Query 66 LAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAA 125
L G R A+ QLLL PV +Y++ S Q GI G+ L ++L S + RW+
Sbjct 76 LFRGVHGCRTPAIVVQLLLFPVIYYVLGPSRQLLWGIVCGLFVLFTFLMLISEQTRRWSM 135
Query 126 GRD 128
G D
Sbjct 136 GED 138
>gi|331698902|ref|YP_004335141.1| hypothetical protein Psed_5151 [Pseudonocardia dioxanivorans
CB1190]
gi|326953591|gb|AEA27288.1| hypothetical protein Psed_5151 [Pseudonocardia dioxanivorans
CB1190]
Length=146
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/129 (42%), Positives = 71/129 (56%), Gaps = 1/129 (0%)
Query 4 RAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAG 63
R P +R AG++VA+QG +V LLVRGL G I LG G+FVL+G A++ G
Sbjct 18 RTPPQIRVAGVVVALQGLVGIVFGIVLLVRGL-GIGDGIRYVLGETGYFVLIGAALVVVG 76
Query 64 CRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRW 123
L GK W R A+ A+LLL+PV + L+ S Q GI VG++ + +LL S S W
Sbjct 77 IGLLRGKRWSRSPAIVAELLLIPVVYSLLGPSRQIVWGIIVGVVVIATFLLLISERSRLW 136
Query 124 AAGRDQRGA 132
A R
Sbjct 137 ALDLHDRST 145
>gi|334563625|ref|ZP_08516616.1| hypothetical protein CbovD2_03549 [Corynebacterium bovis DSM
20582]
Length=128
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/88 (44%), Positives = 56/88 (64%), Gaps = 3/88 (3%)
Query 45 GLGTAGWFVLVGGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPV 104
G GTA WF+++GG V AAG L+ G+ WGR ++LL +A+Y+ V S + + +P
Sbjct 42 GYGTAIWFIVIGGFVAAAGWALSRGRRWGRAPVTMVHVILLLIAYYM-VKSSRWDLAVPT 100
Query 105 GIIALGVLVLLFSPPSIRWAAG--RDQR 130
+IA+ L LLF+P S+ WAA RD+R
Sbjct 101 AVIAVAGLALLFNPVSVEWAARRFRDRR 128
>gi|172040177|ref|YP_001799891.1| hypothetical protein cur_0497 [Corynebacterium urealyticum DSM
7109]
gi|171851481|emb|CAQ04457.1| hypothetical protein cu0497 [Corynebacterium urealyticum DSM
7109]
Length=156
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/129 (35%), Positives = 66/129 (52%), Gaps = 3/129 (2%)
Query 4 RAPAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHI--VNGLGTAGWFVLVGGAVLA 61
+ P ++ AGL +QG + L+VR G ++G GTA WF + GAV
Sbjct 28 KPPTVIQYAGLYGLIQGLIGIAFGIFLVVREAQGFHDPTAKISGYGTALWFFFIFGAVAV 87
Query 62 AGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSI 121
G L G+ WGRG V Q+ L+PVA+Y+ S +P + +P ++ + L LLF+P +I
Sbjct 88 CGYFLYRGRSWGRGPVVMLQICLVPVAYYMF-RSGRPELAVPTTLVLILGLALLFNPTAI 146
Query 122 RWAAGRDQR 130
W R
Sbjct 147 NWWTMDHYR 155
>gi|317507497|ref|ZP_07965222.1| formate-tetrahydrofolate ligase [Segniliparus rugosus ATCC BAA-974]
gi|316254210|gb|EFV13555.1| formate-tetrahydrofolate ligase [Segniliparus rugosus ATCC BAA-974]
Length=142
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/118 (43%), Positives = 64/118 (55%), Gaps = 9/118 (7%)
Query 13 GLIVAVQGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAVGKLW 72
GLI AV G A V AA++ R G ++ TA F+ GG AG L GK W
Sbjct 32 GLIAAVFGLA--VAFAAVVGRSFPG-----LSSPATAVAFLAFGGTFALAGWSLLRGKSW 84
Query 73 GRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRDQR 130
GRG+ V LLLLP+A+ ++ S QP G P+G L L+ LF P S+RWA +D R
Sbjct 85 GRGVIVIFCLLLLPIAYGIVEDSRQPLYGYPLGAAVLTDLICLFVPSSLRWA--QDNR 140
>gi|134102858|ref|YP_001108519.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|291008750|ref|ZP_06566723.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
gi|133915481|emb|CAM05594.1| probable conserved integral membrane protein [Saccharopolyspora
erythraea NRRL 2338]
Length=143
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/125 (43%), Positives = 69/125 (56%), Gaps = 5/125 (4%)
Query 5 APAAVRGAGLIVAVQGGAALVVAAALLVRG----LAGADQ-HIVNGLGTAGWFVLVGGAV 59
AP +VR AG+I +Q A LV A AL+VRG L G + + G AG++ ++ AV
Sbjct 6 APRSVRIAGVITTLQAVAGLVFATALVVRGAAVDLGGVGELDRRSTYGEAGYYTVLSAAV 65
Query 60 LAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPP 119
LAAG L GK W R A+ QLLLL AWY I S QP IG + ++ VL +F+
Sbjct 66 LAAGIGLVRGKHWARTPAMLLQLLLLGAAWYAIGPSGQPLIGFAIAAPSVAVLCFMFNRE 125
Query 120 SIRWA 124
WA
Sbjct 126 GREWA 130
>gi|333921428|ref|YP_004495009.1| hypothetical protein AS9A_3771 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483649|gb|AEF42209.1| Conserved hypothetical membrane protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=114
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/66 (55%), Positives = 42/66 (64%), Gaps = 0/66 (0%)
Query 32 VRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYL 91
VR + G V+G TAGWFV +G VL G LA+GK WGR +AV QLLLLPV + L
Sbjct 19 VRAVTGTGGTEVSGYATAGWFVFLGAPVLGGGIALALGKRWGRAIAVVIQLLLLPVVFSL 78
Query 92 IVGSHQ 97
I GS Q
Sbjct 79 ISGSQQ 84
>gi|337290205|ref|YP_004629226.1| hypothetical protein CULC22_00591 [Corynebacterium ulcerans BR-AD22]
gi|334696326|gb|AEG81123.1| putative membrane protein [Corynebacterium ulcerans 809]
gi|334698511|gb|AEG83307.1| putative membrane protein [Corynebacterium ulcerans BR-AD22]
Length=138
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/130 (38%), Positives = 68/130 (53%), Gaps = 11/130 (8%)
Query 6 PAAVRGAGLIVAVQGGAALVVAAALLVRGLAGA-DQHIVN---------GLGTAGWFVLV 55
P V AG + A+Q + A L+VR G D IV G GTA +F++V
Sbjct 7 PRPVLYAGWVAAIQSLIGIAYAILLIVREATGHRDASIVYESDNANTWVGYGTAVFFLIV 66
Query 56 GGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLL 115
GAVLA + GK WGRG + Q+LLLP+A+Y+ G + G+ A+ L +L
Sbjct 67 FGAVLAGALMMNRGKRWGRGPVIMLQILLLPIAYYMFNGGALLFSAV-TGLTAIVALAML 125
Query 116 FSPPSIRWAA 125
FSP ++ WAA
Sbjct 126 FSPRAVDWAA 135
>gi|259506521|ref|ZP_05749423.1| membrane protein [Corynebacterium efficiens YS-314]
gi|259165941|gb|EEW50495.1| membrane protein [Corynebacterium efficiens YS-314]
Length=133
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/132 (32%), Positives = 61/132 (47%), Gaps = 11/132 (8%)
Query 6 PAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQ-HIVN---------GLGTAGWFVLV 55
P +R G+I +Q G L A L+ R G D IV G GTA +F+++
Sbjct 2 PPTIRWGGIIALIQSGIGLAYAFFLIYREFTGQDDPSIVYESTEANTWVGFGTAVFFIII 61
Query 56 GGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLL 115
G V A + G+ WGRG + ++ PVA+Y+ I V + A G L +L
Sbjct 62 FGTVFAGALSMMSGRRWGRGPIIMLNIIFFPVAYYMFSEGRYLWAAI-VALSAAGCLAML 120
Query 116 FSPPSIRWAAGR 127
F+ S+ W A +
Sbjct 121 FNARSVHWMANQ 132
>gi|25027340|ref|NP_737394.1| hypothetical protein CE0784 [Corynebacterium efficiens YS-314]
gi|23492621|dbj|BAC17594.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=140
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/132 (32%), Positives = 61/132 (47%), Gaps = 11/132 (8%)
Query 6 PAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQ-HIVN---------GLGTAGWFVLV 55
P +R G+I +Q G L A L+ R G D IV G GTA +F+++
Sbjct 9 PPTIRWGGIIALIQSGIGLAYAFFLIYREFTGQDDPSIVYESTEANTWVGFGTAVFFIII 68
Query 56 GGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLL 115
G V A + G+ WGRG + ++ PVA+Y+ I V + A G L +L
Sbjct 69 FGTVFAGALSMMSGRRWGRGPIIMLNIIFFPVAYYMFSEGRYLWAAI-VALSAAGCLAML 127
Query 116 FSPPSIRWAAGR 127
F+ S+ W A +
Sbjct 128 FNARSVHWMANQ 139
>gi|19551995|ref|NP_599997.1| hypothetical protein NCgl0735 [Corynebacterium glutamicum ATCC
13032]
gi|62389658|ref|YP_225060.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
gi|145294932|ref|YP_001137753.1| hypothetical protein cgR_0878 [Corynebacterium glutamicum R]
gi|21323535|dbj|BAB98162.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC
13032]
gi|41324993|emb|CAF19474.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
gi|140844852|dbj|BAF53851.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043730|gb|EGV39418.1| hypothetical protein CgS9114_13166 [Corynebacterium glutamicum
S9114]
Length=140
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/132 (33%), Positives = 64/132 (49%), Gaps = 11/132 (8%)
Query 6 PAAVRGAGLIVAVQGGAALVVAAALLVRGLAG-ADQHIVN---------GLGTAGWFVLV 55
PA++R G++ +Q A L+ R G D IV G GTA +F++V
Sbjct 9 PASIRWGGIVALIQSTIGFGYAFFLIYREATGETDPSIVYETDNANTWVGYGTAAFFIIV 68
Query 56 GGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLL 115
G V+A + G WGRG V ++LLP A+Y+ + + + I GI AL VL L
Sbjct 69 FGTVVAGAINMMKGHRWGRGAVVMLNIILLPAAYYMFI-EGRFSWAIVTGISALFVLGAL 127
Query 116 FSPPSIRWAAGR 127
F+ ++ WA
Sbjct 128 FNKRAVLWANNE 139
>gi|296270866|ref|YP_003653498.1| hypothetical protein Tbis_2906 [Thermobispora bispora DSM 43833]
gi|296093653|gb|ADG89605.1| hypothetical protein Tbis_2906 [Thermobispora bispora DSM 43833]
Length=142
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/120 (35%), Positives = 62/120 (52%), Gaps = 1/120 (0%)
Query 19 QGGAALVVAAALLVRGLAGADQHIVNGLGTAGWFVLVGGAVLAAGCRLAVGKLWGRGLAV 78
QG LV+A +LV G +V+ + AG+ + G A+L L W RG AV
Sbjct 23 QGLFTLVMAGYVLVETFIGTPADLVSSIALAGFGLATGAALLWVAWGLWRTDRWSRGPAV 82
Query 79 FAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRWAAGRDQRGAASAANR 138
QL +LPVA +++ + Q A G+P+ + A+ VLL +P S R G D+ A ++R
Sbjct 83 VIQLFVLPVA-IMLIRAEQYAYGVPLALAAVSAFVLLLAPSSTRALIGEDEPPGAPGSSR 141
>gi|300857953|ref|YP_003782936.1| hypothetical protein cpfrc_00535 [Corynebacterium pseudotuberculosis
FRC41]
gi|300685407|gb|ADK28329.1| putative membrane protein [Corynebacterium pseudotuberculosis
FRC41]
gi|302205682|gb|ADL10024.1| Hypothetical protein CpC231_0537 [Corynebacterium pseudotuberculosis
C231]
gi|302330234|gb|ADL20428.1| Hypothetical protein Cp1002_0534 [Corynebacterium pseudotuberculosis
1002]
gi|308275917|gb|ADO25816.1| Conserved hypothetical protein [Corynebacterium pseudotuberculosis
I19]
gi|341824346|gb|AEK91867.1| Hypothetical protein CpPAT10_0536 [Corynebacterium pseudotuberculosis
PAT10]
Length=140
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/130 (39%), Positives = 67/130 (52%), Gaps = 11/130 (8%)
Query 6 PAAVRGAGLIVAVQGGAALVVAAALLVRGLAGA-DQHIVN---------GLGTAGWFVLV 55
P V G I A+Q + A L+VR AG D IV G GTA +F++V
Sbjct 9 PRPVLYGGWIAAIQSLIGIAYAVLLIVREAAGYNDASIVYESDGANTWVGYGTAVFFIIV 68
Query 56 GGAVLAAGCRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLL 115
GAVLA + GK WGRG + Q+LLLP+A+Y+ G + + A+ L LL
Sbjct 69 FGAVLAGAIMMNRGKRWGRGPVIMLQILLLPIAYYMFSGGAF-VFSVITALTAIAALALL 127
Query 116 FSPPSIRWAA 125
FSP ++ WAA
Sbjct 128 FSPRAVDWAA 137
>gi|256380277|ref|YP_003103937.1| hypothetical protein Amir_6287 [Actinosynnema mirum DSM 43827]
gi|255924580|gb|ACU40091.1| hypothetical protein Amir_6287 [Actinosynnema mirum DSM 43827]
Length=133
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/126 (42%), Positives = 70/126 (56%), Gaps = 5/126 (3%)
Query 6 PAAVRGAGLIVAVQGGAALVVAAALLVRGLAGADQHIVNG--LGTAGWFVLVGGAVLAAG 63
P AVR AG + VQG L A AL+VR A + G LG A +F ++ V+A G
Sbjct 7 PGAVRAAGALTIVQGLVGLGFAIALVVRSFA---PEVARGQVLGEAAYFAVLCSGVVAVG 63
Query 64 CRLAVGKLWGRGLAVFAQLLLLPVAWYLIVGSHQPAIGIPVGIIALGVLVLLFSPPSIRW 123
LA+GK WGR A+ QLLLL VAWY+ S + G +G+ +GV+ LLF+ + W
Sbjct 64 VGLALGKGWGRTPALVVQLLLLGVAWYMYGPSDRQLWGALIGVYVVGVIYLLFTNAARGW 123
Query 124 AAGRDQ 129
A G +
Sbjct 124 ALGLHE 129
Lambda K H
0.325 0.142 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129250525032
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40