BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3219 Length=84 Score E Sequences producing significant alignments: (Bits) Value gi|15610355|ref|NP_217735.1| transcriptional regulatory protein ... 175 2e-42 gi|240170391|ref|ZP_04749050.1| putative transcriptional regulat... 174 4e-42 gi|296169004|ref|ZP_06850670.1| transcriptional regulatory prote... 173 1e-41 gi|41409418|ref|NP_962254.1| WhiB1 [Mycobacterium avium subsp. p... 172 1e-41 gi|183981361|ref|YP_001849652.1| transcriptional regulatory prot... 172 2e-41 gi|118471404|ref|YP_886285.1| transcription factor WhiB [Mycobac... 171 4e-41 gi|15827351|ref|NP_301614.1| transcriptional regulator [Mycobact... 171 4e-41 gi|118618023|ref|YP_906355.1| transcriptional regulatory protein... 170 7e-41 gi|108798354|ref|YP_638551.1| transcription factor WhiB [Mycobac... 170 8e-41 gi|120402781|ref|YP_952610.1| transcription factor WhiB [Mycobac... 169 1e-40 gi|145225263|ref|YP_001135941.1| transcription factor WhiB [Myco... 166 8e-40 gi|333991572|ref|YP_004524186.1| transcriptional regulator [Myco... 160 5e-38 gi|326383293|ref|ZP_08204981.1| transcription factor WhiB [Gordo... 157 4e-37 gi|134102860|ref|YP_001108521.1| WhiB family transcriptional reg... 150 5e-35 gi|256380279|ref|YP_003103939.1| transcription factor WhiB [Acti... 150 8e-35 gi|227550036|ref|ZP_03980085.1| WhiB family transcriptional regu... 147 4e-34 gi|296138838|ref|YP_003646081.1| transcription factor WhiB [Tsuk... 145 1e-33 gi|111023308|ref|YP_706280.1| WhiB family transcriptional regula... 145 2e-33 gi|226305677|ref|YP_002765637.1| WhiB family regulatory protein ... 144 6e-33 gi|312140651|ref|YP_004007987.1| whib-like transcriptional regul... 143 7e-33 gi|54026553|ref|YP_120795.1| putative transcriptional regulator ... 142 1e-32 gi|334563624|ref|ZP_08516615.1| WhiB family transcriptional regu... 142 1e-32 gi|262203399|ref|YP_003274607.1| transcription factor WhiB [Gord... 142 2e-32 gi|25027339|ref|NP_737393.1| putative transcription regulator [C... 140 5e-32 gi|324998111|ref|ZP_08119223.1| WhiB family transcriptional regu... 140 5e-32 gi|336326257|ref|YP_004606223.1| WhiB family transcription regul... 140 7e-32 gi|343927610|ref|ZP_08767078.1| putative WhiB family regulatory ... 139 1e-31 gi|38233319|ref|NP_939086.1| putative transcriptional regulator ... 139 1e-31 gi|19551994|ref|NP_599996.1| hypothetical protein NCgl0734 [Cory... 139 1e-31 gi|225020693|ref|ZP_03709885.1| hypothetical protein CORMATOL_00... 139 1e-31 gi|284992564|ref|YP_003411118.1| transcription factor WhiB [Geod... 139 2e-31 gi|300857952|ref|YP_003782935.1| WhiB family transcriptional reg... 139 2e-31 gi|300779598|ref|ZP_07089454.1| WhiB family transcription regula... 139 2e-31 gi|172040176|ref|YP_001799890.1| WhiB family transcriptional reg... 138 3e-31 gi|68536705|ref|YP_251410.1| WhiB family transcriptional regulat... 138 3e-31 gi|117927768|ref|YP_872319.1| transcription factor WhiB [Acidoth... 137 6e-31 gi|169630620|ref|YP_001704269.1| WhiB family transcriptional reg... 137 6e-31 gi|340795116|ref|YP_004760579.1| putative WhiB transcription reg... 137 7e-31 gi|258651646|ref|YP_003200802.1| transcription factor WhiB [Naka... 136 1e-30 gi|319949919|ref|ZP_08023919.1| transcription factor WhiB [Dietz... 135 2e-30 gi|257057040|ref|YP_003134872.1| transcription factor WhiB [Sacc... 135 2e-30 gi|284033087|ref|YP_003383018.1| transcription factor WhiB [Krib... 134 3e-30 gi|311743934|ref|ZP_07717740.1| WhiB family transcription regula... 134 3e-30 gi|326332870|ref|ZP_08199127.1| transcription factor, WhiB famil... 134 4e-30 gi|227832519|ref|YP_002834226.1| WhiB transcriptional regulator ... 134 5e-30 gi|291302611|ref|YP_003513889.1| transcription factor WhiB [Stac... 134 6e-30 gi|302529991|ref|ZP_07282333.1| WhiB family transcriptional regu... 133 8e-30 gi|331698904|ref|YP_004335143.1| transcription factor WhiB [Pseu... 132 1e-29 gi|119715948|ref|YP_922913.1| transcription factor WhiB [Nocardi... 132 1e-29 gi|213965847|ref|ZP_03394038.1| transcription factor WhiB [Coryn... 132 2e-29 >gi|15610355|ref|NP_217735.1| transcriptional regulatory protein WHIB-like WHIB1 [Mycobacterium tuberculosis H37Rv] gi|15842806|ref|NP_337843.1| WhiB-related protein [Mycobacterium tuberculosis CDC1551] gi|31794397|ref|NP_856890.1| transcriptional regulatory protein WHIB-like WHIB1 [Mycobacterium bovis AF2122/97] 80 more sequence titles Length=84 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNARTKARTGV Sbjct 61 GGMSEDERRALKRRNARTKARTGV 84 >gi|240170391|ref|ZP_04749050.1| putative transcriptional regulatory protein whiB-like [Mycobacterium kansasii ATCC 12478] Length=84 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 83/84 (99%), Positives = 84/84 (100%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNARTKAR+GV Sbjct 61 GGMSEDERRALKRRNARTKARSGV 84 >gi|296169004|ref|ZP_06850670.1| transcriptional regulatory protein Whib family WhiB1 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896346|gb|EFG76002.1| transcriptional regulatory protein Whib family WhiB1 [Mycobacterium parascrofulaceum ATCC BAA-614] Length=84 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 82/84 (98%), Positives = 84/84 (100%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTT+CLSWALNTGQDSGVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTDCLSWALNTGQDSGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNARTKAR+GV Sbjct 61 GGMSEDERRALKRRNARTKARSGV 84 >gi|41409418|ref|NP_962254.1| WhiB1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118462344|ref|YP_883314.1| transcription factor WhiB [Mycobacterium avium 104] gi|254776606|ref|ZP_05218122.1| transcription factor WhiB [Mycobacterium avium subsp. avium ATCC 25291] 6 more sequence titles Length=84 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 82/84 (98%), Positives = 83/84 (99%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECL WALNTGQDSGVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLGWALNTGQDSGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNARTKAR+GV Sbjct 61 GGMSEDERRALKRRNARTKARSGV 84 >gi|183981361|ref|YP_001849652.1| transcriptional regulatory protein Whib-like WhiB1 [Mycobacterium marinum M] gi|183174687|gb|ACC39797.1| transcriptional regulatory protein Whib-like WhiB1 [Mycobacterium marinum M] Length=84 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 81/84 (97%), Positives = 84/84 (100%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPA+AQIADAKLVCNRCPVTT+CLSWALNTGQDSGVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPAIAQIADAKLVCNRCPVTTDCLSWALNTGQDSGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNARTKAR+GV Sbjct 61 GGMSEDERRALKRRNARTKARSGV 84 >gi|118471404|ref|YP_886285.1| transcription factor WhiB [Mycobacterium smegmatis str. MC2 155] gi|118172691|gb|ABK73587.1| Transcription factor WhiB [Mycobacterium smegmatis str. MC2 155] Length=84 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 81/84 (97%), Positives = 83/84 (99%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWAL +GQD+GVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALESGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNARTKARTGV Sbjct 61 GGMSEDERRALKRRNARTKARTGV 84 >gi|15827351|ref|NP_301614.1| transcriptional regulator [Mycobacterium leprae TN] gi|221229829|ref|YP_002503245.1| putative transcriptional regulator [Mycobacterium leprae Br4923] gi|13092900|emb|CAC30314.1| putative transcriptional regulator [Mycobacterium leprae] gi|219932936|emb|CAR70899.1| putative transcriptional regulator [Mycobacterium leprae Br4923] Length=84 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 80/84 (96%), Positives = 83/84 (99%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPA+AQIADAKLVCNRCPVTTECL+WALNTGQDSGVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPAIAQIADAKLVCNRCPVTTECLAWALNTGQDSGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRN RTKAR+GV Sbjct 61 GGMSEDERRALKRRNTRTKARSGV 84 >gi|118618023|ref|YP_906355.1| transcriptional regulatory protein Whib-like WhiB1 [Mycobacterium ulcerans Agy99] gi|118570133|gb|ABL04884.1| transcriptional regulatory protein Whib-like WhiB1 [Mycobacterium ulcerans Agy99] Length=84 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 80/84 (96%), Positives = 83/84 (99%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPA+AQIADAKLVCNRCPVT +CLSWALNTGQDSGVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPAIAQIADAKLVCNRCPVTIDCLSWALNTGQDSGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNARTKAR+GV Sbjct 61 GGMSEDERRALKRRNARTKARSGV 84 >gi|108798354|ref|YP_638551.1| transcription factor WhiB [Mycobacterium sp. MCS] gi|119867451|ref|YP_937403.1| transcription factor WhiB [Mycobacterium sp. KMS] gi|126434019|ref|YP_001069710.1| transcription factor WhiB [Mycobacterium sp. JLS] gi|108768773|gb|ABG07495.1| transcription factor WhiB [Mycobacterium sp. MCS] gi|119693540|gb|ABL90613.1| transcription factor WhiB [Mycobacterium sp. KMS] gi|126233819|gb|ABN97219.1| transcription factor WhiB [Mycobacterium sp. JLS] Length=84 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 80/84 (96%), Positives = 83/84 (99%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWAL +GQD+GVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALESGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNARTKAR+GV Sbjct 61 GGMSEDERRALKRRNARTKARSGV 84 >gi|120402781|ref|YP_952610.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1] gi|119955599|gb|ABM12604.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1] Length=84 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/84 (96%), Positives = 82/84 (98%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVT ECLSWAL +GQD+GVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTAECLSWALESGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNARTKARTGV Sbjct 61 GGMSEDERRALKRRNARTKARTGV 84 >gi|145225263|ref|YP_001135941.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK] gi|315445560|ref|YP_004078439.1| transcription factor WhiB [Mycobacterium sp. Spyr1] gi|145217749|gb|ABP47153.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK] gi|315263863|gb|ADU00605.1| transcription factor WhiB [Mycobacterium sp. Spyr1] Length=84 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 78/84 (93%), Positives = 81/84 (97%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKA+CRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVT ECLSWAL +GQD+GVW Sbjct 1 MDWRHKAICRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTAECLSWALESGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNARTKART V Sbjct 61 GGMSEDERRALKRRNARTKARTNV 84 >gi|333991572|ref|YP_004524186.1| transcriptional regulator [Mycobacterium sp. JDM601] gi|333487540|gb|AEF36932.1| transcriptional regulatory protein Whib-like WhiB1 [Mycobacterium sp. JDM601] Length=84 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 75/84 (90%), Positives = 79/84 (95%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPALAQIA AK VC RCPV TECL+WAL TGQD+GVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIASAKQVCTRCPVVTECLTWALETGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNART+AR+GV Sbjct 61 GGMSEDERRALKRRNARTRARSGV 84 >gi|326383293|ref|ZP_08204981.1| transcription factor WhiB [Gordonia neofelifaecis NRRL B-59395] gi|326198043|gb|EGD55229.1| transcription factor WhiB [Gordonia neofelifaecis NRRL B-59395] Length=84 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 71/84 (85%), Positives = 79/84 (95%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKA+CRDEDPELFFPVG SGPA+AQ+ADAKLVC RCPVT +CL+WAL TGQD+GVW Sbjct 1 MDWRHKAICRDEDPELFFPVGTSGPAIAQVADAKLVCQRCPVTADCLAWALETGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GGMSEDERRALKRRNART+AR+ V Sbjct 61 GGMSEDERRALKRRNARTRARSAV 84 >gi|134102860|ref|YP_001108521.1| WhiB family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008748|ref|ZP_06566721.1| WhiB family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915483|emb|CAM05596.1| putative transcriptional regulator (WhiB family) [Saccharopolyspora erythraea NRRL 2338] Length=84 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 69/82 (85%), Positives = 76/82 (93%), Gaps = 0/82 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH AVCRDEDPELFFPVGNSGPAL QIA+AK VC RCPV +ECL+WAL +GQD+GVW Sbjct 1 MDWRHDAVCRDEDPELFFPVGNSGPALLQIAEAKAVCRRCPVASECLAWALESGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKART 82 GGMSEDERRALKRRN+RT+ART Sbjct 61 GGMSEDERRALKRRNSRTRART 82 >gi|256380279|ref|YP_003103939.1| transcription factor WhiB [Actinosynnema mirum DSM 43827] gi|255924582|gb|ACU40093.1| transcription factor WhiB [Actinosynnema mirum DSM 43827] Length=84 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 67/82 (82%), Positives = 77/82 (94%), Gaps = 0/82 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+A+CRDEDPELFFPVGNSGPAL QIA+AK VC RCPV ++CL+WAL +GQD+GVW Sbjct 1 MDWRHRAICRDEDPELFFPVGNSGPALLQIAEAKTVCRRCPVVSDCLAWALESGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKART 82 GGMSEDERRALKRRNART+AR+ Sbjct 61 GGMSEDERRALKRRNARTRARS 82 >gi|227550036|ref|ZP_03980085.1| WhiB family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227077882|gb|EEI15845.1| WhiB family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length=87 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 69/84 (83%), Positives = 77/84 (92%), Gaps = 3/84 (3%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+AVCRDEDPELFFPVGNSGPAL+QIA AKLVCNRCPVT++CL WAL TGQD+GVW Sbjct 1 MDWRHEAVCRDEDPELFFPVGNSGPALSQIAQAKLVCNRCPVTSQCLKWALETGQDAGVW 60 Query 61 GGMSEDERRALKRRN---ARTKAR 81 GG+SE+ERRALKRRN AR +AR Sbjct 61 GGLSEEERRALKRRNKQRARNRAR 84 >gi|296138838|ref|YP_003646081.1| transcription factor WhiB [Tsukamurella paurometabola DSM 20162] gi|296026972|gb|ADG77742.1| transcription factor WhiB [Tsukamurella paurometabola DSM 20162] Length=84 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 66/72 (92%), Positives = 70/72 (98%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKA+CRDEDPELFFPVGNSGPA+AQIADAKLVCNRCPVT ECLSWAL +GQD+GVW Sbjct 1 MDWRHKAICRDEDPELFFPVGNSGPAIAQIADAKLVCNRCPVTAECLSWALESGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 61 GGMSEDERRALK 72 >gi|111023308|ref|YP_706280.1| WhiB family transcriptional regulator [Rhodococcus jostii RHA1] gi|226365815|ref|YP_002783598.1| WhiB family regulatory protein [Rhodococcus opacus B4] gi|110822838|gb|ABG98122.1| possible transcriptional regulator, WhiB family protein [Rhodococcus jostii RHA1] gi|226244305|dbj|BAH54653.1| WhiB family regulatory protein [Rhodococcus opacus B4] Length=84 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 66/72 (92%), Positives = 70/72 (98%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKA+CRDEDPELFFPVGNSGPALAQIADAK+VCNRCPVT ECLSWAL +GQD+GVW Sbjct 1 MDWRHKAICRDEDPELFFPVGNSGPALAQIADAKVVCNRCPVTAECLSWALESGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 61 GGMSEDERRALK 72 >gi|226305677|ref|YP_002765637.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4] gi|229489595|ref|ZP_04383458.1| transcription factor WhiB [Rhodococcus erythropolis SK121] gi|226184794|dbj|BAH32898.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4] gi|229323692|gb|EEN89450.1| transcription factor WhiB [Rhodococcus erythropolis SK121] Length=84 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 65/72 (91%), Positives = 69/72 (96%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH A+CRDEDPELFFPVGNSGPALAQIADAK+VCNRCPVT ECLSWAL +GQD+GVW Sbjct 1 MDWRHNAICRDEDPELFFPVGNSGPALAQIADAKVVCNRCPVTAECLSWALESGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 61 GGMSEDERRALK 72 >gi|312140651|ref|YP_004007987.1| whib-like transcriptional regulator [Rhodococcus equi 103S] gi|325675720|ref|ZP_08155404.1| WhiB family transcription regulator [Rhodococcus equi ATCC 33707] gi|311889990|emb|CBH49308.1| WhiB-like transcriptional regulator [Rhodococcus equi 103S] gi|325553691|gb|EGD23369.1| WhiB family transcription regulator [Rhodococcus equi ATCC 33707] Length=84 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 65/72 (91%), Positives = 69/72 (96%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH A+CRDEDPELFFPVGNSGPALAQIADAK+VCNRCPVT ECLSWAL +GQD+GVW Sbjct 1 MDWRHTAICRDEDPELFFPVGNSGPALAQIADAKVVCNRCPVTAECLSWALESGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 61 GGMSEDERRALK 72 >gi|54026553|ref|YP_120795.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54018061|dbj|BAD59431.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=84 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 65/72 (91%), Positives = 69/72 (96%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKA+CRDEDPELFFPVGNSGPALAQIADAKLVC RCPVT +CLSWAL +GQD+GVW Sbjct 1 MDWRHKAICRDEDPELFFPVGNSGPALAQIADAKLVCARCPVTADCLSWALKSGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 61 GGMSEDERRALK 72 >gi|334563624|ref|ZP_08516615.1| WhiB family transcriptional regulator [Corynebacterium bovis DSM 20582] Length=136 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 63/72 (88%), Positives = 70/72 (98%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCR+EDPELFFPVGNSGPALAQIA AKLVCNRCPVT++CL+WA+ +GQD+GVW Sbjct 51 MDWRHKAVCREEDPELFFPVGNSGPALAQIAKAKLVCNRCPVTSQCLNWAIESGQDAGVW 110 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 111 GGMSEDERRALK 122 >gi|262203399|ref|YP_003274607.1| transcription factor WhiB [Gordonia bronchialis DSM 43247] gi|262086746|gb|ACY22714.1| transcription factor WhiB [Gordonia bronchialis DSM 43247] Length=84 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 64/72 (89%), Positives = 68/72 (95%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKA+CRDEDPELFFPVG SGPA+AQIADAKLVC RCPVT ECLSWAL +GQD+GVW Sbjct 1 MDWRHKAICRDEDPELFFPVGTSGPAIAQIADAKLVCARCPVTAECLSWALESGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 61 GGMSEDERRALK 72 >gi|25027339|ref|NP_737393.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259506522|ref|ZP_05749424.1| WhiB family transcription factor [Corynebacterium efficiens YS-314] gi|23492620|dbj|BAC17593.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259165942|gb|EEW50496.1| WhiB family transcription factor [Corynebacterium efficiens YS-314] Length=86 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 63/71 (89%), Positives = 69/71 (98%), Gaps = 0/71 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+AVCR+EDPELFFPVGNSGPALAQIA AK+VCNRCPVTT+CL+WAL TGQD+GVW Sbjct 1 MDWRHEAVCREEDPELFFPVGNSGPALAQIASAKMVCNRCPVTTQCLAWALETGQDAGVW 60 Query 61 GGMSEDERRAL 71 GGMSEDERRAL Sbjct 61 GGMSEDERRAL 71 >gi|324998111|ref|ZP_08119223.1| WhiB family transcriptional regulator [Pseudonocardia sp. P1] Length=83 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 64/83 (78%), Positives = 70/83 (85%), Gaps = 0/83 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH A+CRDEDPELFFPVG SGPAL QIA+AK VC RCPVT CL WAL +GQD+GVW Sbjct 1 MDWRHDAICRDEDPELFFPVGTSGPALMQIAEAKSVCRRCPVTESCLQWALESGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKARTG 83 GGMSEDERRALKRR+ R +A T Sbjct 61 GGMSEDERRALKRRSTRPRAHTA 83 >gi|336326257|ref|YP_004606223.1| WhiB family transcription regulator [Corynebacterium resistens DSM 45100] gi|336102239|gb|AEI10059.1| WhiB family transcription regulator [Corynebacterium resistens DSM 45100] Length=88 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 63/72 (88%), Positives = 69/72 (96%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCR EDPELFFPVGNSGPALAQIA AKLVCNRCPV+++CLSWA+ +GQD+GVW Sbjct 1 MDWRHKAVCRGEDPELFFPVGNSGPALAQIAKAKLVCNRCPVSSQCLSWAIESGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 61 GGMSEDERRALK 72 >gi|343927610|ref|ZP_08767078.1| putative WhiB family regulatory protein [Gordonia alkanivorans NBRC 16433] gi|343762251|dbj|GAA14004.1| putative WhiB family regulatory protein [Gordonia alkanivorans NBRC 16433] Length=84 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 62/72 (87%), Positives = 68/72 (95%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKA+CRDEDPELFFPVG SGPA+AQ+ADAKLVC RCPVT +CLSWAL +GQD+GVW Sbjct 1 MDWRHKAICRDEDPELFFPVGTSGPAIAQVADAKLVCARCPVTADCLSWALESGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 61 GGMSEDERRALK 72 >gi|38233319|ref|NP_939086.1| putative transcriptional regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199578|emb|CAE49230.1| Putative transcriptional regulator [Corynebacterium diphtheriae] Length=86 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 62/71 (88%), Positives = 69/71 (98%), Gaps = 0/71 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+AVCRDEDPELFFPVGNSGPALAQ+A AK+VCNRCPVT++CL+WAL TGQD+GVW Sbjct 1 MDWRHEAVCRDEDPELFFPVGNSGPALAQVAAAKVVCNRCPVTSQCLAWALETGQDAGVW 60 Query 61 GGMSEDERRAL 71 GGMSEDERRAL Sbjct 61 GGMSEDERRAL 71 >gi|19551994|ref|NP_599996.1| hypothetical protein NCgl0734 [Corynebacterium glutamicum ATCC 13032] gi|62389657|ref|YP_225059.1| hypothetical protein cg0878 [Corynebacterium glutamicum ATCC 13032] gi|145294931|ref|YP_001137752.1| hypothetical protein cgR_0877 [Corynebacterium glutamicum R] gi|19072885|gb|AAL84640.1| putative transcriptional regulator WhiB [Corynebacterium glutamicum] gi|21323534|dbj|BAB98161.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] gi|41324992|emb|CAF19473.1| Transcription factor WhiB [Corynebacterium glutamicum ATCC 13032] gi|140844851|dbj|BAF53850.1| hypothetical protein [Corynebacterium glutamicum R] gi|344043731|gb|EGV39419.1| hypothetical protein CgS9114_13171 [Corynebacterium glutamicum S9114] Length=86 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 61/71 (86%), Positives = 69/71 (98%), Gaps = 0/71 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+A+CR+EDPELFFPVGNSGPALAQIA AK+VCNRCPVT++CL+WAL TGQD+GVW Sbjct 1 MDWRHEAICREEDPELFFPVGNSGPALAQIASAKMVCNRCPVTSQCLAWALETGQDAGVW 60 Query 61 GGMSEDERRAL 71 GGMSEDERRAL Sbjct 61 GGMSEDERRAL 71 >gi|225020693|ref|ZP_03709885.1| hypothetical protein CORMATOL_00700 [Corynebacterium matruchotii ATCC 33806] gi|224946639|gb|EEG27848.1| hypothetical protein CORMATOL_00700 [Corynebacterium matruchotii ATCC 33806] Length=86 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 63/71 (89%), Positives = 68/71 (96%), Gaps = 0/71 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPALAQ+A AK VCNRCPVT++CL+WAL TGQD+GVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQVAAAKKVCNRCPVTSQCLAWALETGQDAGVW 60 Query 61 GGMSEDERRAL 71 GGMSEDERRAL Sbjct 61 GGMSEDERRAL 71 >gi|284992564|ref|YP_003411118.1| transcription factor WhiB [Geodermatophilus obscurus DSM 43160] gi|284065809|gb|ADB76747.1| transcription factor WhiB [Geodermatophilus obscurus DSM 43160] Length=83 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 62/83 (75%), Positives = 70/83 (85%), Gaps = 0/83 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+A+CRDEDPELFFP+G +GPAL QI AK VC RCPV CL WAL++GQDSGVW Sbjct 1 MDWRHRALCRDEDPELFFPIGTTGPALVQIEQAKGVCRRCPVVESCLDWALHSGQDSGVW 60 Query 61 GGMSEDERRALKRRNARTKARTG 83 GG+SEDERRALKRR ART+ RT Sbjct 61 GGLSEDERRALKRRQARTRVRTA 83 >gi|300857952|ref|YP_003782935.1| WhiB family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|337290204|ref|YP_004629225.1| WhiB family transcription regulator [Corynebacterium ulcerans BR-AD22] gi|300685406|gb|ADK28328.1| WhiB-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] 6 more sequence titles Length=86 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 61/71 (86%), Positives = 69/71 (98%), Gaps = 0/71 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+A+CRDEDPELFFPVGNSGPALAQ+A AK+VCNRCPVT++CL+WAL TGQD+GVW Sbjct 1 MDWRHEAICRDEDPELFFPVGNSGPALAQVAAAKVVCNRCPVTSQCLAWALETGQDAGVW 60 Query 61 GGMSEDERRAL 71 GGMSEDERRAL Sbjct 61 GGMSEDERRAL 71 >gi|300779598|ref|ZP_07089454.1| WhiB family transcription regulator [Corynebacterium genitalium ATCC 33030] gi|300533708|gb|EFK54767.1| WhiB family transcription regulator [Corynebacterium genitalium ATCC 33030] Length=85 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 62/71 (88%), Positives = 68/71 (96%), Gaps = 0/71 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+AVCRDEDPELFFPVGNSGPAL+QIA AKLVCNRCPVT++CL WAL TGQD+GVW Sbjct 1 MDWRHEAVCRDEDPELFFPVGNSGPALSQIAQAKLVCNRCPVTSQCLKWALETGQDAGVW 60 Query 61 GGMSEDERRAL 71 GGMSE+ERRAL Sbjct 61 GGMSEEERRAL 71 >gi|172040176|ref|YP_001799890.1| WhiB family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171851480|emb|CAQ04456.1| putative transcriptional regulator (WhiB family) [Corynebacterium urealyticum DSM 7109] Length=86 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 62/72 (87%), Positives = 68/72 (95%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCR EDPELFFPVGNSGPALAQ A AKLVCNRCPVTT+CL+WA+++GQD+GVW Sbjct 1 MDWRHKAVCRQEDPELFFPVGNSGPALAQTAKAKLVCNRCPVTTDCLTWAISSGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERR LK Sbjct 61 GGMSEDERRVLK 72 >gi|68536705|ref|YP_251410.1| WhiB family transcriptional regulator [Corynebacterium jeikeium K411] gi|260577898|ref|ZP_05845828.1| WhiB family transcription factor [Corynebacterium jeikeium ATCC 43734] gi|68264304|emb|CAI37792.1| putative transcriptional regulator (WhiB family) [Corynebacterium jeikeium K411] gi|258603918|gb|EEW17165.1| WhiB family transcription factor [Corynebacterium jeikeium ATCC 43734] Length=88 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 61/72 (85%), Positives = 69/72 (96%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCR+EDPELFFPVGNSGPALAQIA AKLVCNRCPV ++CL+WA+ +GQD+GVW Sbjct 1 MDWRHKAVCREEDPELFFPVGNSGPALAQIAKAKLVCNRCPVASQCLNWAIESGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGM+EDERRALK Sbjct 61 GGMAEDERRALK 72 >gi|117927768|ref|YP_872319.1| transcription factor WhiB [Acidothermus cellulolyticus 11B] gi|117648231|gb|ABK52333.1| transcription factor WhiB [Acidothermus cellulolyticus 11B] Length=83 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 60/82 (74%), Positives = 71/82 (87%), Gaps = 0/82 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+A CRDEDPELFFP+G +GPAL QI AK VC RCPV TECL+WAL TGQD+G+W Sbjct 1 MDWRHRAACRDEDPELFFPIGTTGPALLQIEQAKAVCRRCPVRTECLNWALETGQDAGIW 60 Query 61 GGMSEDERRALKRRNARTKART 82 GG++E+ERRALKRRNAR + +T Sbjct 61 GGLTEEERRALKRRNARLRPQT 82 >gi|169630620|ref|YP_001704269.1| WhiB family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169242587|emb|CAM63615.1| Putative transcriptional regulator, WhiB family [Mycobacterium abscessus] Length=84 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 62/67 (93%), Positives = 66/67 (99%), Gaps = 0/67 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECL+WAL +GQD+GVW Sbjct 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLTWALESGQDAGVW 60 Query 61 GGMSEDE 67 GG+SEDE Sbjct 61 GGLSEDE 67 >gi|340795116|ref|YP_004760579.1| putative WhiB transcription regulator [Corynebacterium variabile DSM 44702] gi|340535026|gb|AEK37506.1| putative WhiB transcription regulator [Corynebacterium variabile DSM 44702] Length=86 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 60/72 (84%), Positives = 69/72 (96%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+A+CR EDPELFFPVGNSGPALAQIA AKLVCN+CPVT +CL+WA+++GQD+GVW Sbjct 1 MDWRHEAICRSEDPELFFPVGNSGPALAQIAKAKLVCNKCPVTHDCLAWAISSGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 61 GGMSEDERRALK 72 >gi|258651646|ref|YP_003200802.1| transcription factor WhiB [Nakamurella multipartita DSM 44233] gi|258554871|gb|ACV77813.1| transcription factor WhiB [Nakamurella multipartita DSM 44233] Length=83 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 60/72 (84%), Positives = 67/72 (94%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+A+CRDEDPELFFPVGNSGPAL QIA+AK VC RCPVT+ECL+WAL TGQD+GVW Sbjct 1 MDWRHRAICRDEDPELFFPVGNSGPALLQIAEAKAVCQRCPVTSECLAWALETGQDAGVW 60 Query 61 GGMSEDERRALK 72 G MSEDERR+LK Sbjct 61 GAMSEDERRSLK 72 >gi|319949919|ref|ZP_08023919.1| transcription factor WhiB [Dietzia cinnamea P4] gi|319436420|gb|EFV91540.1| transcription factor WhiB [Dietzia cinnamea P4] Length=82 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 60/67 (90%), Positives = 65/67 (98%), Gaps = 0/67 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKA+CRDEDPELFFPVGNSGPALAQIA+AK+VCNRCPVT ECLSWAL +GQD+GVW Sbjct 1 MDWRHKAICRDEDPELFFPVGNSGPALAQIAEAKIVCNRCPVTAECLSWALESGQDAGVW 60 Query 61 GGMSEDE 67 GGMSEDE Sbjct 61 GGMSEDE 67 >gi|257057040|ref|YP_003134872.1| transcription factor WhiB [Saccharomonospora viridis DSM 43017] gi|256586912|gb|ACU98045.1| transcription factor WhiB [Saccharomonospora viridis DSM 43017] Length=84 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 61/82 (75%), Positives = 71/82 (87%), Gaps = 0/82 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+A CRDEDPELFFPVG SGPAL+QIA AK VC+RC V ++CL+WAL +GQD+GVW Sbjct 1 MDWRHRAACRDEDPELFFPVGTSGPALSQIAAAKAVCHRCTVASDCLAWALASGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKART 82 GGMSEDERRALKRR A+ R+ Sbjct 61 GGMSEDERRALKRRRAQIGMRS 82 >gi|284033087|ref|YP_003383018.1| transcription factor WhiB [Kribbella flavida DSM 17836] gi|283812380|gb|ADB34219.1| transcription factor WhiB [Kribbella flavida DSM 17836] Length=83 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 60/83 (73%), Positives = 69/83 (84%), Gaps = 0/83 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+AVC DEDPELFFP+GN+GPA+ QI +AK VC RC V +CL+WAL GQD GVW Sbjct 1 MDWRHRAVCLDEDPELFFPIGNTGPAIMQIEEAKQVCRRCDVREQCLAWALEAGQDHGVW 60 Query 61 GGMSEDERRALKRRNARTKARTG 83 GG+SEDERRALKRRNAR + RT Sbjct 61 GGLSEDERRALKRRNARARIRTA 83 >gi|311743934|ref|ZP_07717740.1| WhiB family transcription regulator [Aeromicrobium marinum DSM 15272] gi|311313064|gb|EFQ82975.1| WhiB family transcription regulator [Aeromicrobium marinum DSM 15272] Length=83 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 59/83 (72%), Positives = 69/83 (84%), Gaps = 0/83 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHK+ C DEDPELFFP+GN+GPA+ QI +AKLVC RC V +CL WAL +GQD GVW Sbjct 1 MDWRHKSACLDEDPELFFPIGNTGPAIMQIEEAKLVCRRCDVRDQCLQWALESGQDHGVW 60 Query 61 GGMSEDERRALKRRNARTKARTG 83 GG+SEDERR+LKRRNAR + RT Sbjct 61 GGLSEDERRSLKRRNARARIRTA 83 >gi|326332870|ref|ZP_08199127.1| transcription factor, WhiB family [Nocardioidaceae bacterium Broad-1] gi|325949228|gb|EGD41311.1| transcription factor, WhiB family [Nocardioidaceae bacterium Broad-1] Length=84 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 59/84 (71%), Positives = 69/84 (83%), Gaps = 0/84 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH++ C DEDPELFFP+GN+GPA+ QI +AK VC RC V +CL WAL GQD GVW Sbjct 1 MDWRHRSACLDEDPELFFPIGNTGPAILQIEEAKQVCRRCDVREQCLQWALEAGQDHGVW 60 Query 61 GGMSEDERRALKRRNARTKARTGV 84 GG+SEDERRALKRRNAR++ RT V Sbjct 61 GGLSEDERRALKRRNARSRVRTAV 84 >gi|227832519|ref|YP_002834226.1| WhiB transcriptional regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183614|ref|ZP_06043035.1| WhiB transcriptional regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453535|gb|ACP32288.1| WhiB transcriptional regulator [Corynebacterium aurimucosum ATCC 700975] Length=85 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 59/72 (82%), Positives = 66/72 (92%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+AVCRDEDPELFFPVGNSGPAL QIA AKLVCNRCPV + CL WAL +GQD+GVW Sbjct 1 MDWRHEAVCRDEDPELFFPVGNSGPALTQIAKAKLVCNRCPVASSCLKWALESGQDAGVW 60 Query 61 GGMSEDERRALK 72 GG+SE+ERRA+K Sbjct 61 GGLSEEERRAIK 72 >gi|291302611|ref|YP_003513889.1| transcription factor WhiB [Stackebrandtia nassauensis DSM 44728] gi|290571831|gb|ADD44796.1| transcription factor WhiB [Stackebrandtia nassauensis DSM 44728] Length=88 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 59/75 (79%), Positives = 65/75 (87%), Gaps = 0/75 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH A+CRDEDPELFFP+G+SGPAL QI AK VC RCPVT ECL WAL +GQD+G+W Sbjct 1 MDWRHIAICRDEDPELFFPIGDSGPALVQIEQAKGVCRRCPVTEECLKWALESGQDAGIW 60 Query 61 GGMSEDERRALKRRN 75 GGMSEDERRALKRR Sbjct 61 GGMSEDERRALKRRG 75 >gi|302529991|ref|ZP_07282333.1| WhiB family transcriptional regulator [Streptomyces sp. AA4] gi|302438886|gb|EFL10702.1| WhiB family transcriptional regulator [Streptomyces sp. AA4] Length=84 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 59/82 (72%), Positives = 68/82 (83%), Gaps = 0/82 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH A CRDEDPELFFPVG SGPAL Q+++AK VC+RCP ++CL+WAL +GQD+GVW Sbjct 1 MDWRHDAACRDEDPELFFPVGTSGPALLQVSEAKAVCHRCPAASDCLAWALASGQDAGVW 60 Query 61 GGMSEDERRALKRRNARTKART 82 GGMSEDERRALKRR RT Sbjct 61 GGMSEDERRALKRRRTHIGTRT 82 >gi|331698904|ref|YP_004335143.1| transcription factor WhiB [Pseudonocardia dioxanivorans CB1190] gi|326953593|gb|AEA27290.1| transcription factor WhiB [Pseudonocardia dioxanivorans CB1190] Length=83 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 60/72 (84%), Positives = 64/72 (89%), Gaps = 0/72 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH+AVCRDEDPELFFPVG SGPAL QIA+AK VC RCP TECL WAL +GQD+GVW Sbjct 1 MDWRHRAVCRDEDPELFFPVGTSGPALLQIAEAKTVCRRCPAVTECLEWALESGQDAGVW 60 Query 61 GGMSEDERRALK 72 GGMSEDERRALK Sbjct 61 GGMSEDERRALK 72 >gi|119715948|ref|YP_922913.1| transcription factor WhiB [Nocardioides sp. JS614] gi|119536609|gb|ABL81226.1| transcription factor WhiB [Nocardioides sp. JS614] Length=83 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 58/83 (70%), Positives = 68/83 (82%), Gaps = 0/83 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRH++ C DEDPELFFP+GN+GPA+ QI +AK VC RC V +CL+WAL GQD GVW Sbjct 1 MDWRHRSACLDEDPELFFPIGNTGPAILQIEEAKQVCRRCEVREQCLAWALEAGQDHGVW 60 Query 61 GGMSEDERRALKRRNARTKARTG 83 GG+SEDERRALKRRNAR + RT Sbjct 61 GGLSEDERRALKRRNARARVRTA 83 >gi|213965847|ref|ZP_03394038.1| transcription factor WhiB [Corynebacterium amycolatum SK46] gi|213951425|gb|EEB62816.1| transcription factor WhiB [Corynebacterium amycolatum SK46] Length=89 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 59/67 (89%), Positives = 64/67 (96%), Gaps = 0/67 (0%) Query 1 MDWRHKAVCRDEDPELFFPVGNSGPALAQIADAKLVCNRCPVTTECLSWALNTGQDSGVW 60 MDWRHKAVCR+EDPELFFPVGNSGPALAQIA AK+VCNRCPVT +CL+WAL TGQD+GVW Sbjct 1 MDWRHKAVCREEDPELFFPVGNSGPALAQIAKAKVVCNRCPVTAQCLAWALETGQDAGVW 60 Query 61 GGMSEDE 67 GGMSEDE Sbjct 61 GGMSEDE 67 Lambda K H 0.319 0.133 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131923386480 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40