BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3221A Length=101 Score E Sequences producing significant alignments: (Bits) Value gi|15842809|ref|NP_337846.1| hypothetical protein MT3318 [Mycoba... 200 7e-50 gi|118618026|ref|YP_906358.1| anti-sigma factor [Mycobacterium u... 159 2e-37 gi|297732869|ref|ZP_06961987.1| anti-sigma factor [Mycobacterium... 158 2e-37 gi|183981358|ref|YP_001849649.1| anti-sigma factor [Mycobacteriu... 157 4e-37 gi|240170388|ref|ZP_04749047.1| anti-sigma factor [Mycobacterium... 148 3e-34 gi|41409421|ref|NP_962257.1| hypothetical protein MAP3323c [Myco... 130 6e-29 gi|336459509|gb|EGO38446.1| anti-sigma factor, TIGR02949 family/... 129 2e-28 gi|254819138|ref|ZP_05224139.1| hypothetical protein MintA_04389... 129 2e-28 gi|342861181|ref|ZP_08717830.1| hypothetical protein MCOL_19957 ... 128 3e-28 gi|254776609|ref|ZP_05218125.1| hypothetical protein MaviaA2_183... 126 9e-28 gi|296169000|ref|ZP_06850666.1| anti-sigma factor family protein... 126 1e-27 gi|118467967|ref|YP_886281.1| anti-sigma factor, family protein ... 123 9e-27 gi|333991576|ref|YP_004524190.1| anti-sigma factor [Mycobacteriu... 122 1e-26 gi|145225266|ref|YP_001135944.1| hypothetical protein Mflv_4688 ... 121 3e-26 gi|169630623|ref|YP_001704272.1| hypothetical protein MAB_3542c ... 121 3e-26 gi|120402778|ref|YP_952607.1| hypothetical protein Mvan_1779 [My... 120 7e-26 gi|126434016|ref|YP_001069707.1| hypothetical protein Mjls_1414 ... 117 4e-25 gi|108798351|ref|YP_638548.1| hypothetical protein Mmcs_1380 [My... 117 4e-25 gi|262203402|ref|YP_003274610.1| anti-sigma factor [Gordonia bro... 112 2e-23 gi|343927613|ref|ZP_08767081.1| putative anti-sigma factor [Gord... 103 1e-20 gi|226305674|ref|YP_002765634.1| anti-sigma factor [Rhodococcus ... 97.1 8e-19 gi|296138836|ref|YP_003646079.1| anti-sigma factor [Tsukamurella... 96.3 1e-18 gi|312140654|ref|YP_004007990.1| anti sigma factor [Rhodococcus ... 95.1 3e-18 gi|226365812|ref|YP_002783595.1| anti-sigma factor [Rhodococcus ... 94.0 6e-18 gi|111023305|ref|YP_706277.1| anti-sigma factor [Rhodococcus jos... 92.8 1e-17 gi|54026556|ref|YP_120798.1| putative anti-sigma factor [Nocardi... 92.4 2e-17 gi|302529994|ref|ZP_07282336.1| anti-sigma factor [Streptomyces ... 87.0 8e-16 gi|134102863|ref|YP_001108524.1| anti-sigma factor [Saccharopoly... 86.7 1e-15 gi|324998109|ref|ZP_08119221.1| anti-sigma factor [Pseudonocardi... 85.9 2e-15 gi|331698906|ref|YP_004335145.1| anti-sigma factor [Pseudonocard... 84.7 4e-15 gi|257057044|ref|YP_003134876.1| anti-sigma factor [Saccharomono... 84.7 4e-15 gi|300789789|ref|YP_003770080.1| anti-sigma factor [Amycolatopsi... 83.6 1e-14 gi|333921433|ref|YP_004495014.1| putative anti-sigma factor [Amy... 83.2 1e-14 gi|256380281|ref|YP_003103941.1| anti-sigma factor [Actinosynnem... 82.8 1e-14 gi|126215790|gb|ABN81015.1| putative anti-sigma factor [Rhodococ... 82.4 2e-14 gi|326383290|ref|ZP_08204978.1| anti-sigma factor [Gordonia neof... 77.4 6e-13 gi|238060890|ref|ZP_04605599.1| hypothetical protein MCAG_01856 ... 73.2 1e-11 gi|330469944|ref|YP_004407687.1| hypothetical protein VAB18032_0... 72.0 2e-11 gi|258651643|ref|YP_003200799.1| anti-sigma factor [Nakamurella ... 72.0 2e-11 gi|284992569|ref|YP_003411123.1| anti-sigma factor [Geodermatoph... 70.1 9e-11 gi|145596225|ref|YP_001160522.1| hypothetical protein Strop_3713... 68.6 3e-10 gi|296394596|ref|YP_003659480.1| anti-sigma factor [Segniliparus... 67.8 5e-10 gi|159039622|ref|YP_001538875.1| anti-sigma factor RshA [Salinis... 67.4 7e-10 gi|284033098|ref|YP_003383029.1| anti-sigma factor [Kribbella fl... 64.7 4e-09 gi|117927747|ref|YP_872298.1| anti-sigma factor [Acidothermus ce... 63.9 8e-09 gi|288917879|ref|ZP_06412239.1| anti-sigma factor [Frankia sp. E... 63.2 1e-08 gi|86742447|ref|YP_482847.1| anti-sigma factor [Frankia sp. CcI3... 62.4 2e-08 gi|158312816|ref|YP_001505324.1| anti-sigma factor RshA [Frankia... 62.0 3e-08 gi|312194682|ref|YP_004014743.1| anti-sigma factor [Frankia sp. ... 61.6 4e-08 gi|291302638|ref|YP_003513916.1| anti-sigma factor [Stackebrandt... 61.2 4e-08 >gi|15842809|ref|NP_337846.1| hypothetical protein MT3318 [Mycobacterium tuberculosis CDC1551] gi|31794400|ref|NP_856893.1| anti-sigma factor [Mycobacterium bovis AF2122/97] gi|57117075|ref|YP_177945.1| anti-sigma factor [Mycobacterium tuberculosis H37Rv] 80 more sequence titles Length=101 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 100/101 (99%), Positives = 101/101 (100%), Gaps = 0/101 (0%) Query 1 VSENCGPTDAHADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHY 60 +SENCGPTDAHADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHY Sbjct 1 MSENCGPTDAHADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHY 60 Query 61 GLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIRGGP 101 GLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIRGGP Sbjct 61 GLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIRGGP 101 >gi|118618026|ref|YP_906358.1| anti-sigma factor [Mycobacterium ulcerans Agy99] gi|118570136|gb|ABL04887.1| anti-sigma factor [Mycobacterium ulcerans Agy99] Length=101 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/100 (76%), Positives = 89/100 (89%), Gaps = 0/100 (0%) Query 1 VSENCGPTDAHADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHY 60 +SE G D+ D++DSHG GCAEVIAEVWTLLDGECTPETR++LR+HLEACPGCL+HY Sbjct 1 MSEVPGSPDSLPDNEDSHGYFGCAEVIAEVWTLLDGECTPETRQKLRKHLEACPGCLKHY 60 Query 61 GLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIRGG 100 GLEERIK LI TKC+G++APEGLRER+RL+I RTTIIRGG Sbjct 61 GLEERIKLLIATKCQGEKAPEGLRERVRLQISRTTIIRGG 100 >gi|297732869|ref|ZP_06961987.1| anti-sigma factor [Mycobacterium tuberculosis KZN R506] Length=81 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%) Query 21 MGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAP 80 MGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAP Sbjct 1 MGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAP 60 Query 81 EGLRERLRLEIRRTTIIRGGP 101 EGLRERLRLEIRRTTIIRGGP Sbjct 61 EGLRERLRLEIRRTTIIRGGP 81 >gi|183981358|ref|YP_001849649.1| anti-sigma factor [Mycobacterium marinum M] gi|183174684|gb|ACC39794.1| anti-sigma factor [Mycobacterium marinum M] Length=101 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 76/100 (76%), Positives = 88/100 (88%), Gaps = 0/100 (0%) Query 1 VSENCGPTDAHADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHY 60 +SE G D+ D++DSHG GCAEVIAEVWTLLDGECTPETR++LR HLEACPGCL+HY Sbjct 1 MSEVPGSPDSLPDNEDSHGYFGCAEVIAEVWTLLDGECTPETRQKLREHLEACPGCLKHY 60 Query 61 GLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIRGG 100 GLEERIK LI TKC+G++APEGLRER+RL+I RTTIIRGG Sbjct 61 GLEERIKLLIATKCQGEKAPEGLRERVRLQISRTTIIRGG 100 >gi|240170388|ref|ZP_04749047.1| anti-sigma factor [Mycobacterium kansasii ATCC 12478] Length=101 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/98 (73%), Positives = 84/98 (86%), Gaps = 0/98 (0%) Query 1 VSENCGPTDAHADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHY 60 +S+ +D+ D +DSHG +GCAEVIAEVWTLLDGECT ETR++LR HLEACPGCL+HY Sbjct 1 MSDVLSSSDSCPDREDSHGYVGCAEVIAEVWTLLDGECTAETRQKLREHLEACPGCLKHY 60 Query 61 GLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIR 98 GLEERIK LI TKC+G++APE L ER+RLEIRRTTIIR Sbjct 61 GLEERIKLLIATKCKGEKAPESLHERVRLEIRRTTIIR 98 >gi|41409421|ref|NP_962257.1| hypothetical protein MAP3323c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398252|gb|AAS05873.1| hypothetical protein MAP_3323c [Mycobacterium avium subsp. paratuberculosis K-10] Length=104 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/102 (75%), Positives = 89/102 (88%), Gaps = 3/102 (2%) Query 1 VSENCGPTDAHAD---HDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCL 57 +SE+ G DA ++ +DDSHG +GCAEVI +VW LLDGEC P+TRE+LRRHLEACPGC Sbjct 1 MSESSGQGDALSESCPNDDSHGAVGCAEVIRQVWLLLDGECGPDTREQLRRHLEACPGCF 60 Query 58 RHYGLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIRG 99 +HYGLEERIKALI TKC+G++APEGLRERLRLEIRRTTIIRG Sbjct 61 KHYGLEERIKALIATKCKGEKAPEGLRERLRLEIRRTTIIRG 102 >gi|336459509|gb|EGO38446.1| anti-sigma factor, TIGR02949 family/mycothiol system anti-sigma-R factor [Mycobacterium avium subsp. paratuberculosis S397] Length=104 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/102 (75%), Positives = 88/102 (87%), Gaps = 3/102 (2%) Query 1 VSENCGPTDAHAD---HDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCL 57 +SE+ G DA + +DDSHG +GCAEVI +VW LLDGEC P+TRE+LRRHLEACPGC Sbjct 1 MSESSGQGDALPESCPNDDSHGAVGCAEVIRQVWLLLDGECGPDTREQLRRHLEACPGCF 60 Query 58 RHYGLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIRG 99 +HYGLEERIKALI TKC+G++APEGLRERLRLEIRRTTIIRG Sbjct 61 KHYGLEERIKALIATKCKGEKAPEGLRERLRLEIRRTTIIRG 102 >gi|254819138|ref|ZP_05224139.1| hypothetical protein MintA_04389 [Mycobacterium intracellulare ATCC 13950] Length=104 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/102 (76%), Positives = 87/102 (86%), Gaps = 3/102 (2%) Query 1 VSENCGPTDAHAD---HDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCL 57 +SE G A AD +D+SHG +GCAEVI +VW LLDGEC P+TRE+LRRHLEACPGC Sbjct 1 MSEFAGQGGASADACPNDESHGSVGCAEVIRQVWLLLDGECGPDTREQLRRHLEACPGCF 60 Query 58 RHYGLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIRG 99 +HYGLEERIKALI TKC+G+RAPEGLRERLRLEIRRTTIIRG Sbjct 61 KHYGLEERIKALIATKCKGERAPEGLRERLRLEIRRTTIIRG 102 >gi|342861181|ref|ZP_08717830.1| hypothetical protein MCOL_19957 [Mycobacterium colombiense CECT 3035] gi|342131625|gb|EGT84895.1| hypothetical protein MCOL_19957 [Mycobacterium colombiense CECT 3035] Length=104 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/102 (75%), Positives = 87/102 (86%), Gaps = 3/102 (2%) Query 1 VSENCGPTDAHAD---HDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCL 57 +SE GP A D +D+SHG +GCAEVI +VW LLDGEC P+TRE+LR+HLEACPGC Sbjct 1 MSELSGPGAASPDACPNDESHGSVGCAEVIRQVWLLLDGECGPDTREQLRQHLEACPGCF 60 Query 58 RHYGLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIRG 99 +HYGLEERIKALI TKCRG++APEGLRERLRLEIRRTTIIRG Sbjct 61 KHYGLEERIKALIATKCRGEKAPEGLRERLRLEIRRTTIIRG 102 >gi|254776609|ref|ZP_05218125.1| hypothetical protein MaviaA2_18341 [Mycobacterium avium subsp. avium ATCC 25291] Length=94 Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 71/86 (83%), Positives = 80/86 (94%), Gaps = 0/86 (0%) Query 14 HDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTK 73 +DDSHG +GCAEVI +VW LLDGEC P+TRE+LRRHLEACPGC +HYGLEERIKALI TK Sbjct 7 NDDSHGAVGCAEVIRQVWLLLDGECGPDTREQLRRHLEACPGCFKHYGLEERIKALIATK 66 Query 74 CRGDRAPEGLRERLRLEIRRTTIIRG 99 C+G++APEGLRERLRLEIRRTTIIRG Sbjct 67 CKGEKAPEGLRERLRLEIRRTTIIRG 92 >gi|296169000|ref|ZP_06850666.1| anti-sigma factor family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896342|gb|EFG75998.1| anti-sigma factor family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=100 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/98 (76%), Positives = 85/98 (87%), Gaps = 1/98 (1%) Query 1 VSENCGPTDAHADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHY 60 +SE G +D +DD HG +GCAEVI +VW LLDGECTPE+R++LRRHLEACPGC +HY Sbjct 1 MSELSGSSDT-CPNDDDHGAVGCAEVIRQVWLLLDGECTPESRDQLRRHLEACPGCFKHY 59 Query 61 GLEERIKALIGTKCRGDRAPEGLRERLRLEIRRTTIIR 98 GLEERIKALI TKCRG++APEGLRERLRLEIRRTTIIR Sbjct 60 GLEERIKALIATKCRGEKAPEGLRERLRLEIRRTTIIR 97 >gi|118467967|ref|YP_886281.1| anti-sigma factor, family protein [Mycobacterium smegmatis str. MC2 155] gi|5305778|gb|AAD41811.1|AF144091_5 unknown [Mycobacterium smegmatis str. MC2 155] gi|118169254|gb|ABK70150.1| anti-sigma factor, family protein [Mycobacterium smegmatis str. MC2 155] Length=101 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 57/77 (75%), Positives = 68/77 (89%), Gaps = 0/77 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 CA VIAEVWTLLDGECTPETR++L++HLE CP CLRHYG+EER+K LI KC G++AP+ Sbjct 25 CAAVIAEVWTLLDGECTPETRDKLKQHLEECPTCLRHYGIEERVKRLIAAKCSGEKAPDS 84 Query 83 LRERLRLEIRRTTIIRG 99 LRERLR++I RTTIIRG Sbjct 85 LRERLRIQISRTTIIRG 101 >gi|333991576|ref|YP_004524190.1| anti-sigma factor [Mycobacterium sp. JDM601] gi|333487544|gb|AEF36936.1| anti-sigma factor [Mycobacterium sp. JDM601] Length=98 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/75 (82%), Positives = 65/75 (87%), Gaps = 0/75 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 C+EVIAEVWTLLDGECT ETR +LRRHLE CPGCLRHYG+EERIKALI KC GDRAP Sbjct 20 CSEVIAEVWTLLDGECTAETRAKLRRHLEECPGCLRHYGVEERIKALIARKCSGDRAPRQ 79 Query 83 LRERLRLEIRRTTII 97 L ER+RLEI RTTII Sbjct 80 LYERVRLEISRTTII 94 >gi|145225266|ref|YP_001135944.1| hypothetical protein Mflv_4688 [Mycobacterium gilvum PYR-GCK] gi|315445564|ref|YP_004078443.1| anti-sigma factor, TIGR02949 family [Mycobacterium sp. Spyr1] gi|145217752|gb|ABP47156.1| hypothetical protein Mflv_4688 [Mycobacterium gilvum PYR-GCK] gi|315263867|gb|ADU00609.1| anti-sigma factor, TIGR02949 family [Mycobacterium sp. Spyr1] Length=109 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 58/78 (75%), Positives = 67/78 (86%), Gaps = 0/78 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 CA VIAEVWTLLDGECT ETR++LR+HLE CP CLRHYG+EE+IK LI KC G+RAPEG Sbjct 32 CAAVIAEVWTLLDGECTVETRDKLRQHLEECPACLRHYGVEEKIKRLIAMKCSGERAPEG 91 Query 83 LRERLRLEIRRTTIIRGG 100 RERLR++I +TTIIR G Sbjct 92 FRERLRIQISQTTIIRQG 109 >gi|169630623|ref|YP_001704272.1| hypothetical protein MAB_3542c [Mycobacterium abscessus ATCC 19977] gi|169242590|emb|CAM63618.1| Conserved hypothetical protein (possible anti-sigma factor) [Mycobacterium abscessus] Length=102 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 54/77 (71%), Positives = 68/77 (89%), Gaps = 0/77 (0%) Query 22 GCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPE 81 GCAEVIAEVWTLLDGEC+PE+ RLR HLE CPGCL+HYG+EE+IK L+ KC G++AP+ Sbjct 20 GCAEVIAEVWTLLDGECSPESSARLRHHLEECPGCLQHYGIEEQIKTLVARKCGGEKAPD 79 Query 82 GLRERLRLEIRRTTIIR 98 GLRERL+L+I +TT+I+ Sbjct 80 GLRERLKLKISQTTVIQ 96 >gi|120402778|ref|YP_952607.1| hypothetical protein Mvan_1779 [Mycobacterium vanbaalenii PYR-1] gi|119955596|gb|ABM12601.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=110 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 57/78 (74%), Positives = 68/78 (88%), Gaps = 0/78 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 CA VIAEVWTLLDGECT ETR++LR+HLE CP CLR+YG+EER+K LI KC G+RAP+G Sbjct 33 CAAVIAEVWTLLDGECTVETRDKLRQHLEECPTCLRYYGVEERVKKLIAAKCSGERAPDG 92 Query 83 LRERLRLEIRRTTIIRGG 100 LRERLR++I +TTIIR G Sbjct 93 LRERLRIQISQTTIIRRG 110 >gi|126434016|ref|YP_001069707.1| hypothetical protein Mjls_1414 [Mycobacterium sp. JLS] gi|126233816|gb|ABN97216.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=97 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 56/77 (73%), Positives = 65/77 (85%), Gaps = 0/77 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 CA VIAEVWTLLDGECTPETR++L+ HLE CP CLRHYG+EER+K LI KC G++AP+ Sbjct 21 CAAVIAEVWTLLDGECTPETRDKLKHHLEECPACLRHYGVEERVKRLIAVKCGGEKAPDR 80 Query 83 LRERLRLEIRRTTIIRG 99 LRERLR+EI RTTI R Sbjct 81 LRERLRIEISRTTIYRS 97 >gi|108798351|ref|YP_638548.1| hypothetical protein Mmcs_1380 [Mycobacterium sp. MCS] gi|119867448|ref|YP_937400.1| hypothetical protein Mkms_1398 [Mycobacterium sp. KMS] gi|108768770|gb|ABG07492.1| hypothetical protein Mmcs_1380 [Mycobacterium sp. MCS] gi|119693537|gb|ABL90610.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=97 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 56/77 (73%), Positives = 65/77 (85%), Gaps = 0/77 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 CA VIAEVWTLLDGECTPETR++L+ HLE CP CLRHYG+EER+K LI KC G++AP+ Sbjct 21 CAAVIAEVWTLLDGECTPETRDKLKHHLEECPACLRHYGVEERVKRLIAAKCGGEKAPDR 80 Query 83 LRERLRLEIRRTTIIRG 99 LRERLR+EI RTTI R Sbjct 81 LRERLRIEISRTTIYRS 97 >gi|262203402|ref|YP_003274610.1| anti-sigma factor [Gordonia bronchialis DSM 43247] gi|262086749|gb|ACY22717.1| anti-sigma factor [Gordonia bronchialis DSM 43247] Length=103 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 51/86 (60%), Positives = 64/86 (75%), Gaps = 0/86 (0%) Query 12 ADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIG 71 +D D M C+ VIA+VW LLD EC P R RL+ HL+ACP CL HYG+E+++KALI Sbjct 3 SDLDPEFTSMDCSAVIADVWLLLDNECDPGARARLQEHLDACPACLAHYGIEQQLKALIN 62 Query 72 TKCRGDRAPEGLRERLRLEIRRTTII 97 KC GD+AP GLRERLR+EIR+T I+ Sbjct 63 RKCGGDQAPAGLRERLRVEIRKTVIV 88 >gi|343927613|ref|ZP_08767081.1| putative anti-sigma factor [Gordonia alkanivorans NBRC 16433] gi|343762254|dbj|GAA14007.1| putative anti-sigma factor [Gordonia alkanivorans NBRC 16433] Length=95 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/87 (53%), Positives = 63/87 (73%), Gaps = 0/87 (0%) Query 12 ADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIG 71 +D D + C+ VIA+VW LLD EC R RL+ HL+ CP CL HYG+E ++KAL+ Sbjct 2 SDIDPEVTQLDCSAVIADVWLLLDNECDENARMRLQGHLDTCPSCLAHYGIERQLKALVN 61 Query 72 TKCRGDRAPEGLRERLRLEIRRTTIIR 98 KC GD+AP+GLR+RLR+EIR+T I++ Sbjct 62 RKCGGDQAPQGLRDRLRVEIRKTVIVQ 88 >gi|226305674|ref|YP_002765634.1| anti-sigma factor [Rhodococcus erythropolis PR4] gi|229489365|ref|ZP_04383228.1| anti-sigma factor family protein [Rhodococcus erythropolis SK121] gi|226184791|dbj|BAH32895.1| anti-sigma factor [Rhodococcus erythropolis PR4] gi|229323462|gb|EEN89220.1| anti-sigma factor family protein [Rhodococcus erythropolis SK121] Length=93 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 43/82 (53%), Positives = 59/82 (72%), Gaps = 0/82 (0%) Query 16 DSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCR 75 D + C+ VIA+VW +LDGEC +R RL+RH++ C CL YG+EE++K+LI KC Sbjct 5 DEFERLDCSAVIADVWLMLDGECDDSSRARLQRHIDDCGSCLEAYGIEEKVKSLINRKCG 64 Query 76 GDRAPEGLRERLRLEIRRTTII 97 GD APE LR+RL +E+RRT +I Sbjct 65 GDHAPESLRQRLTVELRRTIVI 86 >gi|296138836|ref|YP_003646079.1| anti-sigma factor [Tsukamurella paurometabola DSM 20162] gi|296026970|gb|ADG77740.1| anti-sigma factor [Tsukamurella paurometabola DSM 20162] Length=93 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 41/76 (54%), Positives = 57/76 (75%), Gaps = 0/76 (0%) Query 21 MGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAP 80 + C+ V+A++W LLD EC E + RL+ H++ C CL HYG+E++IKAL+G KC GDRAP Sbjct 13 LDCSAVMADIWLLLDNECDAEAKARLKAHIDGCSQCLSHYGIEQQIKALVGRKCGGDRAP 72 Query 81 EGLRERLRLEIRRTTI 96 EGLRERL + +R T + Sbjct 73 EGLRERLTITLRHTEV 88 >gi|312140654|ref|YP_004007990.1| anti sigma factor [Rhodococcus equi 103S] gi|325675716|ref|ZP_08155400.1| anti-sigma factor [Rhodococcus equi ATCC 33707] gi|311889993|emb|CBH49311.1| putative anti sigma factor [Rhodococcus equi 103S] gi|325553687|gb|EGD23365.1| anti-sigma factor [Rhodococcus equi ATCC 33707] Length=99 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/82 (55%), Positives = 56/82 (69%), Gaps = 1/82 (1%) Query 21 MGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAP 80 + C+ VIA+VW LLD EC +R R+ HLE C C YG+EE++K LIG KC GD AP Sbjct 10 LDCSAVIADVWLLLDSECDEHSRARIEHHLETCGACFAAYGIEEKVKRLIGRKCGGDHAP 69 Query 81 EGLRERLRLEIRRTTIIR-GGP 101 GLRERL +EIRRT ++ GP Sbjct 70 AGLRERLSIEIRRTVVVSDAGP 91 >gi|226365812|ref|YP_002783595.1| anti-sigma factor [Rhodococcus opacus B4] gi|226244302|dbj|BAH54650.1| putative anti-sigma factor [Rhodococcus opacus B4] Length=93 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 41/82 (50%), Positives = 58/82 (71%), Gaps = 0/82 (0%) Query 16 DSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCR 75 D + C+ VIA+VW +LD EC +R RL+RHL+ C CL YG+EE++K+L+ KC Sbjct 5 DEFEQLDCSAVIADVWLMLDSECDEASRARLQRHLDECGSCLEAYGIEEKVKSLVNRKCG 64 Query 76 GDRAPEGLRERLRLEIRRTTII 97 G+ APE LR+RL +E+RRT +I Sbjct 65 GEHAPESLRQRLSIELRRTILI 86 >gi|111023305|ref|YP_706277.1| anti-sigma factor [Rhodococcus jostii RHA1] gi|110822835|gb|ABG98119.1| possible anti-sigma factor [Rhodococcus jostii RHA1] Length=93 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 41/82 (50%), Positives = 58/82 (71%), Gaps = 0/82 (0%) Query 16 DSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCR 75 D + C+ VIA+VW +LD EC +R RL+RHL+ C CL YG+EE++K+L+ KC Sbjct 5 DEFEQLDCSAVIADVWLMLDRECDAASRARLQRHLDECGSCLEAYGIEEKVKSLVNRKCG 64 Query 76 GDRAPEGLRERLRLEIRRTTII 97 G+ APE LR+RL +E+RRT +I Sbjct 65 GEHAPESLRQRLSIELRRTILI 86 >gi|54026556|ref|YP_120798.1| putative anti-sigma factor [Nocardia farcinica IFM 10152] gi|54018064|dbj|BAD59434.1| putative anti-sigma factor [Nocardia farcinica IFM 10152] Length=95 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 40/84 (48%), Positives = 59/84 (71%), Gaps = 0/84 (0%) Query 16 DSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCR 75 D + C V+A+VW +LDGEC TR RL+ H++ C C+ YG+EE++K+L+ KC Sbjct 6 DPDMELDCTAVLADVWLMLDGECDDATRARLQHHMDHCSPCIEAYGIEEKLKSLLSRKCG 65 Query 76 GDRAPEGLRERLRLEIRRTTIIRG 99 GD+AP+ LR+RL++EIRR+ I G Sbjct 66 GDKAPDSLRDRLKIEIRRSVTITG 89 >gi|302529994|ref|ZP_07282336.1| anti-sigma factor [Streptomyces sp. AA4] gi|302438889|gb|EFL10705.1| anti-sigma factor [Streptomyces sp. AA4] Length=107 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 41/80 (52%), Positives = 54/80 (68%), Gaps = 0/80 (0%) Query 21 MGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAP 80 M C + +AE++ LLD EC+PE LRRH+E CP CL YG++E+IK L+ KC GD AP Sbjct 11 MPCEDALAEIYLLLDRECSPERDAELRRHIEDCPPCLEEYGIDEQIKHLLARKCGGDLAP 70 Query 81 EGLRERLRLEIRRTTIIRGG 100 L+ RLR IR+T +GG Sbjct 71 AELKSRLRASIRQTVATQGG 90 >gi|134102863|ref|YP_001108524.1| anti-sigma factor [Saccharopolyspora erythraea NRRL 2338] gi|291008745|ref|ZP_06566718.1| anti-sigma factor [Saccharopolyspora erythraea NRRL 2338] gi|133915486|emb|CAM05599.1| possible anti-sigma factor [Saccharopolyspora erythraea NRRL 2338] Length=111 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 0/75 (0%) Query 22 GCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPE 81 C +V+AEVW LD EC E R L+RHL+ C CL HYGLEE IKAL+ KC G+ AP+ Sbjct 10 SCDDVLAEVWLFLDNECDRERRAILQRHLDDCGSCLEHYGLEEHIKALLHRKCSGEHAPK 69 Query 82 GLRERLRLEIRRTTI 96 LR+RLR IR T + Sbjct 70 ELRDRLRASIRETVL 84 >gi|324998109|ref|ZP_08119221.1| anti-sigma factor [Pseudonocardia sp. P1] Length=124 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 39/80 (49%), Positives = 54/80 (68%), Gaps = 0/80 (0%) Query 17 SHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRG 76 S GG C EV+AEVW LD EC R+ L++HL+ C CL YG++E++KAL+ KC G Sbjct 16 SGGGADCGEVLAEVWMFLDRECDQNRRQLLQQHLDECAPCLAEYGIDEKLKALLARKCGG 75 Query 77 DRAPEGLRERLRLEIRRTTI 96 + APE L++RLR +IR + Sbjct 76 EAAPESLKDRLRTQIRSAVL 95 >gi|331698906|ref|YP_004335145.1| anti-sigma factor [Pseudonocardia dioxanivorans CB1190] gi|326953595|gb|AEA27292.1| anti-sigma factor [Pseudonocardia dioxanivorans CB1190] Length=114 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 38/74 (52%), Positives = 53/74 (72%), Gaps = 0/74 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 C+EV+AEVW LD EC + R L +HL+ C CL YG++E++KAL+ +KC G+ AP+G Sbjct 11 CSEVLAEVWLFLDHECDAQRRALLAQHLDECAPCLAEYGIDEKLKALLASKCGGEHAPDG 70 Query 83 LRERLRLEIRRTTI 96 LRERLR +IR + Sbjct 71 LRERLRTQIRHAVL 84 >gi|257057044|ref|YP_003134876.1| anti-sigma factor [Saccharomonospora viridis DSM 43017] gi|256586916|gb|ACU98049.1| anti-sigma factor, TIGR02949 family [Saccharomonospora viridis DSM 43017] Length=116 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 40/80 (50%), Positives = 53/80 (67%), Gaps = 0/80 (0%) Query 21 MGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAP 80 + C + +AE++ LLD ECTPE LRRH+E CP CL YG++E+IK L+ KC G+ AP Sbjct 17 VSCDDALAEIYLLLDKECTPERDAELRRHIEDCPPCLEEYGIDEQIKQLLARKCGGEHAP 76 Query 81 EGLRERLRLEIRRTTIIRGG 100 L+ RL+ IRRT R G Sbjct 77 AELKHRLQESIRRTVAERSG 96 >gi|300789789|ref|YP_003770080.1| anti-sigma factor [Amycolatopsis mediterranei U32] gi|299799303|gb|ADJ49678.1| anti-sigma factor [Amycolatopsis mediterranei U32] gi|340531457|gb|AEK46662.1| anti-sigma factor [Amycolatopsis mediterranei S699] Length=106 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/78 (50%), Positives = 51/78 (66%), Gaps = 0/78 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 C E +A+++ LLD EC+PE LR H+E CP CL YG++E +K L+ KC GD AP Sbjct 14 CEEALADIYLLLDRECSPERDAALRSHIEDCPPCLEEYGIDEHLKQLLARKCGGDHAPAE 73 Query 83 LRERLRLEIRRTTIIRGG 100 L+ RLR IR+T RGG Sbjct 74 LKSRLRASIRQTVATRGG 91 >gi|333921433|ref|YP_004495014.1| putative anti-sigma factor [Amycolicicoccus subflavus DQS3-9A1] gi|333483654|gb|AEF42214.1| Putative anti-sigma factor [Amycolicicoccus subflavus DQS3-9A1] Length=103 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/82 (54%), Positives = 56/82 (69%), Gaps = 2/82 (2%) Query 16 DSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCR 75 DSH + C V+A+V+ LLD EC RERL+ HL+ C CL YG+EE+IK L+ KC Sbjct 17 DSH--VDCTAVMADVYLLLDHECDEVIRERLQAHLDECGPCLEAYGVEEKIKRLLSRKCG 74 Query 76 GDRAPEGLRERLRLEIRRTTII 97 G+RAPE LR+RL +EIRR I Sbjct 75 GERAPEYLRDRLTIEIRRQVTI 96 >gi|256380281|ref|YP_003103941.1| anti-sigma factor [Actinosynnema mirum DSM 43827] gi|255924584|gb|ACU40095.1| anti-sigma factor [Actinosynnema mirum DSM 43827] Length=130 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/81 (51%), Positives = 50/81 (62%), Gaps = 0/81 (0%) Query 18 HGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGD 77 H C+EV++EVW LD EC RE L HL+ C CL YGLEE +KAL+ KC GD Sbjct 6 HHETNCSEVLSEVWLFLDQECDQARRELLATHLDECHPCLEEYGLEEHLKALLARKCGGD 65 Query 78 RAPEGLRERLRLEIRRTTIIR 98 AP+ L+ RLR IR T +R Sbjct 66 LAPDELKARLRARIRETVTVR 86 >gi|126215790|gb|ABN81015.1| putative anti-sigma factor [Rhodococcus opacus] Length=77 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/70 (53%), Positives = 51/70 (73%), Gaps = 0/70 (0%) Query 28 AEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEGLRERL 87 A+VW +LD EC +R RL+RHL+ C CL YG+EE++K L+ KC G+ APE LR+RL Sbjct 1 ADVWLMLDRECDEASRARLQRHLDECGSCLEAYGIEEKVKGLVNRKCGGEHAPESLRQRL 60 Query 88 RLEIRRTTII 97 +E+RRT +I Sbjct 61 SIELRRTILI 70 >gi|326383290|ref|ZP_08204978.1| anti-sigma factor [Gordonia neofelifaecis NRRL B-59395] gi|326198040|gb|EGD55226.1| anti-sigma factor [Gordonia neofelifaecis NRRL B-59395] Length=98 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 32/71 (46%), Positives = 47/71 (67%), Gaps = 0/71 (0%) Query 12 ADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIG 71 A+ + + C+ V+A++W LLD EC R RL H+ ACP CL HYG+++++KALI Sbjct 3 ANDESEFENLDCSAVLADIWLLLDNECDAGARSRLEGHVNACPSCLEHYGVQQQLKALIS 62 Query 72 TKCRGDRAPEG 82 KC G+ AP+G Sbjct 63 RKCGGEHAPDG 73 >gi|238060890|ref|ZP_04605599.1| hypothetical protein MCAG_01856 [Micromonospora sp. ATCC 39149] gi|237882701|gb|EEP71529.1| hypothetical protein MCAG_01856 [Micromonospora sp. ATCC 39149] Length=95 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 0/75 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 C EV+AEV+ LD EC E R +RRHL+ C CLR YGLE+ +KAL+ C + AP+ Sbjct 11 CREVLAEVYFYLDLECAEERRTLIRRHLDECGPCLREYGLEQEVKALVARCCGNETAPDQ 70 Query 83 LRERLRLEIRRTTII 97 LRERLR+ + + Sbjct 71 LRERLRVRLTELVVF 85 >gi|330469944|ref|YP_004407687.1| hypothetical protein VAB18032_00015 [Verrucosispora maris AB-18-032] gi|328812915|gb|AEB47087.1| hypothetical protein VAB18032_00015 [Verrucosispora maris AB-18-032] Length=95 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/77 (47%), Positives = 47/77 (62%), Gaps = 0/77 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 C EV+AEV+ LD EC E R +R HL+ C CLR YG+E+ +KAL+ C + AP+ Sbjct 11 CREVLAEVYLYLDLECAQERRTLIRHHLDECGPCLREYGIEQEVKALVARCCGNESAPDE 70 Query 83 LRERLRLEIRRTTIIRG 99 LRERLR+ I I Sbjct 71 LRERLRVRISELVIFES 87 >gi|258651643|ref|YP_003200799.1| anti-sigma factor [Nakamurella multipartita DSM 44233] gi|258554868|gb|ACV77810.1| anti-sigma factor [Nakamurella multipartita DSM 44233] Length=102 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/94 (42%), Positives = 54/94 (58%), Gaps = 7/94 (7%) Query 5 CGPTDAHADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEE 64 CG AD D GC+ V+ +VW LD E P R ++++HL+ C CL GL+ Sbjct 7 CGDPSELADPDS-----GCSGVLRDVWLFLDNEMDPANRAKVQQHLDECSPCLEEAGLDR 61 Query 65 RIKALIGTKCRGDRAPEGLRERL--RLEIRRTTI 96 ++K L+ KC GDRAP+ LR R+ LEI TT+ Sbjct 62 KLKELLARKCGGDRAPDQLRHRVIASLEINITTV 95 >gi|284992569|ref|YP_003411123.1| anti-sigma factor [Geodermatophilus obscurus DSM 43160] gi|284065814|gb|ADB76752.1| anti-sigma factor [Geodermatophilus obscurus DSM 43160] Length=115 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 32/93 (35%), Positives = 52/93 (56%), Gaps = 0/93 (0%) Query 8 TDAHADHDDSHGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIK 67 +D D ++ C +V++ V+ LD E P R+ + HLE C CLR +G+E+ K Sbjct 3 SDQRPDAEEPISVDSCDDVLSHVFEFLDHETEPARRQVIAEHLEDCSPCLRQFGIEQEFK 62 Query 68 ALIGTKCRGDRAPEGLRERLRLEIRRTTIIRGG 100 AL+ +C GD P GLR+R++L++ + G Sbjct 63 ALVRRRCGGDAPPPGLRDRIKLQLTSVSFEEDG 95 >gi|145596225|ref|YP_001160522.1| hypothetical protein Strop_3713 [Salinispora tropica CNB-440] gi|145305562|gb|ABP56144.1| hypothetical protein Strop_3713 [Salinispora tropica CNB-440] Length=95 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 47/75 (63%), Gaps = 0/75 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 C EV+AEV+ LD EC E R +R HL+ C CLR YG+E+ ++AL+ C + AP+ Sbjct 11 CREVLAEVYLYLDLECAEERRTLIRHHLDECGPCLREYGIEQEVQALVARCCGNETAPDQ 70 Query 83 LRERLRLEIRRTTII 97 LRERLR ++ + Sbjct 71 LRERLRSKLAELVVF 85 >gi|296394596|ref|YP_003659480.1| anti-sigma factor [Segniliparus rotundus DSM 44985] gi|296181743|gb|ADG98649.1| anti-sigma factor [Segniliparus rotundus DSM 44985] Length=140 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/71 (50%), Positives = 44/71 (62%), Gaps = 1/71 (1%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDR-APE 81 C E + +W + DG C + RERL H E CP C Y LE RIK L+ KC+ + APE Sbjct 53 CREEVEALWLVADGGCDVKLRERLEAHFENCPSCHTQYELEVRIKELLSKKCKSEPCAPE 112 Query 82 GLRERLRLEIR 92 GL+E+LR EIR Sbjct 113 GLKEKLRGEIR 123 >gi|159039622|ref|YP_001538875.1| anti-sigma factor RshA [Salinispora arenicola CNS-205] gi|157918457|gb|ABV99884.1| Anti-sigma factor RshA [Salinispora arenicola CNS-205] Length=95 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 32/75 (43%), Positives = 47/75 (63%), Gaps = 0/75 (0%) Query 23 CAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAPEG 82 C EV+AEV+ LD EC E RE ++ HL+ C CLR YG+E ++AL+ C + AP+ Sbjct 11 CREVLAEVYLYLDLECAEERRELIQHHLDECGPCLREYGIEREVQALVARCCGNETAPDQ 70 Query 83 LRERLRLEIRRTTII 97 LR+RLR ++ + Sbjct 71 LRQRLRSKLAELVVF 85 >gi|284033098|ref|YP_003383029.1| anti-sigma factor [Kribbella flavida DSM 17836] gi|283812391|gb|ADB34230.1| anti-sigma factor [Kribbella flavida DSM 17836] Length=90 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/84 (34%), Positives = 45/84 (54%), Gaps = 0/84 (0%) Query 18 HGGMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGD 77 H + C+E++ V+ +D E + + +R+HLE C CL Y LE IK L+ C D Sbjct 6 HHDVDCSEILQRVYVFIDNELEDASSDEIRQHLEECAPCLDQYDLERCIKKLVHRSCGDD 65 Query 78 RAPEGLRERLRLEIRRTTIIRGGP 101 +APE LR ++ L + + + P Sbjct 66 QAPEALRAKILLHLTQVRVETTSP 89 >gi|117927747|ref|YP_872298.1| anti-sigma factor [Acidothermus cellulolyticus 11B] gi|117648210|gb|ABK52312.1| anti-sigma factor [Acidothermus cellulolyticus 11B] Length=90 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/77 (38%), Positives = 47/77 (62%), Gaps = 0/77 (0%) Query 20 GMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRA 79 + C+EV+ +V+ LDGE E R+R+HL+ C CL YGL++ +K+L+ C D A Sbjct 8 AVPCSEVLEQVYVYLDGELGAEEIARIRQHLDECAPCLEEYGLDQLVKSLVARCCGHDHA 67 Query 80 PEGLRERLRLEIRRTTI 96 P+ LR+++ IR + Sbjct 68 PDALRQKILARIREIRV 84 >gi|288917879|ref|ZP_06412239.1| anti-sigma factor [Frankia sp. EUN1f] gi|288350668|gb|EFC84885.1| anti-sigma factor [Frankia sp. EUN1f] Length=95 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/65 (42%), Positives = 40/65 (62%), Gaps = 0/65 (0%) Query 20 GMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRA 79 + C +V+ V+ LDGEC + +R HL+ C CLR +G+E +K L+ KC G+RA Sbjct 8 NIDCRKVLDAVFLYLDGECNGSQQNLIRSHLDECSPCLREFGVEHEVKMLVARKCGGERA 67 Query 80 PEGLR 84 P+ LR Sbjct 68 PDSLR 72 >gi|86742447|ref|YP_482847.1| anti-sigma factor [Frankia sp. CcI3] gi|86569309|gb|ABD13118.1| anti-sigma factor [Frankia sp. CcI3] Length=94 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/76 (40%), Positives = 44/76 (58%), Gaps = 0/76 (0%) Query 21 MGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAP 80 + C +V+ V+ LDGEC + +R HL+ C CLR +G+E +K L+ KC G+RAP Sbjct 9 IDCRKVLDAVFLYLDGECEGGQQNLIRAHLDECSPCLREFGVEHEVKMLVARKCGGERAP 68 Query 81 EGLRERLRLEIRRTTI 96 E LR L +R + Sbjct 69 ESLRASLLARLRAARV 84 >gi|158312816|ref|YP_001505324.1| anti-sigma factor RshA [Frankia sp. EAN1pec] gi|158108221|gb|ABW10418.1| Anti-sigma factor RshA [Frankia sp. EAN1pec] Length=94 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/73 (39%), Positives = 43/73 (59%), Gaps = 0/73 (0%) Query 20 GMGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRA 79 + C +V+ V+ LDGEC + +R HL+ C CLR +G+E +K L+ KC G+RA Sbjct 8 NIDCRKVLDAVFLYLDGECNDPQQHLIRAHLDECSPCLREFGVEHEVKMLVARKCGGERA 67 Query 80 PEGLRERLRLEIR 92 P+ LR + +R Sbjct 68 PDSLRLSVLARLR 80 >gi|312194682|ref|YP_004014743.1| anti-sigma factor [Frankia sp. EuI1c] gi|311226018|gb|ADP78873.1| anti-sigma factor [Frankia sp. EuI1c] Length=98 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/72 (39%), Positives = 43/72 (60%), Gaps = 0/72 (0%) Query 21 MGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAP 80 + C +V+ V+ LD EC + +R HL+ C CLR +G+E+ +K L+ KC G+RAP Sbjct 9 IDCRKVLDAVFLYLDNECDGSQQNLIRAHLDECSPCLREFGVEQEVKLLVARKCGGERAP 68 Query 81 EGLRERLRLEIR 92 + LR L +R Sbjct 69 DSLRVSLMARLR 80 >gi|291302638|ref|YP_003513916.1| anti-sigma factor [Stackebrandtia nassauensis DSM 44728] gi|290571858|gb|ADD44823.1| anti-sigma factor [Stackebrandtia nassauensis DSM 44728] Length=87 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/79 (36%), Positives = 48/79 (61%), Gaps = 0/79 (0%) Query 21 MGCAEVIAEVWTLLDGECTPETRERLRRHLEACPGCLRHYGLEERIKALIGTKCRGDRAP 80 + C EV++EV+ LD EC R+ +++HL C CL YG+E+ ++AL+ C D AP Sbjct 9 VDCREVLSEVYFYLDSECGDARRDLIKQHLAECSPCLAEYGIEQDVRALVHRCCSKDTAP 68 Query 81 EGLRERLRLEIRRTTIIRG 99 + ++ RLR ++ + + G Sbjct 69 QEVKARLREKLAKFDLGSG 87 Lambda K H 0.321 0.141 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128767090968 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40