BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3223c Length=216 Score E Sequences producing significant alignments: (Bits) Value gi|148824423|ref|YP_001289177.1| RNA polymerase sigma factor Rpo... 445 2e-123 gi|308232383|ref|ZP_07664071.1| RNA polymerase sigma-70 factor [... 444 4e-123 gi|339296053|gb|AEJ48164.1| RNA polymerase sigma factor RpoE [My... 444 5e-123 gi|15610359|ref|NP_217739.1| RNA polymerase sigma factor RpoE [M... 443 9e-123 gi|15842811|ref|NP_337848.1| RNA polymerase sigma factor RpoE [M... 443 1e-122 gi|167966909|ref|ZP_02549186.1| RNA polymerase sigma factor RpoE... 442 1e-122 gi|254233836|ref|ZP_04927161.1| alternative RNA polymerase sigma... 442 2e-122 gi|289575942|ref|ZP_06456169.1| alternative RNA polymerase sigma... 441 3e-122 gi|340628202|ref|YP_004746654.1| alternative RNA polymerase sigm... 439 2e-121 gi|240170387|ref|ZP_04749046.1| RNA polymerase sigma factor RpoE... 395 2e-108 gi|342861182|ref|ZP_08717831.1| RNA polymerase sigma factor RpoE... 391 3e-107 gi|254819139|ref|ZP_05224140.1| RNA polymerase sigma factor RpoE... 391 3e-107 gi|296168999|ref|ZP_06850665.1| RNA polymerase sigma-70 factor [... 390 8e-107 gi|183981357|ref|YP_001849648.1| alternative RNA polymerase sigm... 389 1e-106 gi|118618027|ref|YP_906359.1| RNA polymerase sigma factor RpoE [... 386 1e-105 gi|41409422|ref|NP_962258.1| RNA polymerase sigma factor RpoE [M... 385 2e-105 gi|118465818|ref|YP_883317.1| RNA polymerase sigma factor RpoE [... 385 2e-105 gi|254776610|ref|ZP_05218126.1| RNA polymerase sigma factor RpoE... 381 3e-104 gi|108798350|ref|YP_638547.1| ECF subfamily RNA polymerase sigma... 379 2e-103 gi|333991577|ref|YP_004524191.1| RNA polymerase sigma-E factor (... 377 5e-103 gi|120402777|ref|YP_952606.1| ECF subfamily RNA polymerase sigma... 374 6e-102 gi|145225267|ref|YP_001135945.1| ECF subfamily RNA polymerase si... 372 2e-101 gi|118469630|ref|YP_886280.1| RNA polymerase sigma-70 factor, fa... 363 8e-99 gi|5305777|gb|AAD41810.1|AF144091_4 sigma factor SigH [Mycobacte... 363 1e-98 gi|226365811|ref|YP_002783594.1| RNA polymerase sigma factor Rpo... 345 2e-93 gi|111023304|ref|YP_706276.1| RNA polymerase sigma factor RpoE [... 344 6e-93 gi|169630624|ref|YP_001704273.1| RNA polymerase sigma-E factor [... 343 1e-92 gi|226305673|ref|YP_002765633.1| RNA polymerase ECF-type sigma f... 340 9e-92 gi|229489419|ref|ZP_04383282.1| RNA polymerase sigma-70 factor f... 340 1e-91 gi|326383289|ref|ZP_08204977.1| RNA polymerase sigma factor RpoE... 339 2e-91 gi|312140655|ref|YP_004007991.1| sigma-70 factor [Rhodococcus eq... 338 2e-91 gi|325675715|ref|ZP_08155399.1| RNA polymerase sigma factor RpoE... 338 4e-91 gi|54026557|ref|YP_120799.1| RNA polymerase sigma factor RpoE [N... 333 1e-89 gi|333921434|ref|YP_004495015.1| RNA polymerase sigma factor [Am... 332 2e-89 gi|262203403|ref|YP_003274611.1| RNA polymerase sigma-70 factor ... 331 3e-89 gi|343927614|ref|ZP_08767082.1| RNA polymerase ECF-type sigma fa... 330 9e-89 gi|296138835|ref|YP_003646078.1| ECF subfamily RNA polymerase si... 327 1e-87 gi|331698907|ref|YP_004335146.1| ECF subfamily RNA polymerase si... 321 5e-86 gi|324998108|ref|ZP_08119220.1| RNA polymerase, sigma-24 subunit... 314 4e-84 gi|126215788|gb|ABN81014.1| putative sigma factor sigma 70 type ... 308 2e-82 gi|257057043|ref|YP_003134875.1| RNA polymerase sigma-70 factor ... 303 1e-80 gi|256380282|ref|YP_003103942.1| ECF subfamily RNA polymerase si... 303 1e-80 gi|300789790|ref|YP_003770081.1| RNA polymerase sigma-70 factor,... 302 2e-80 gi|302529995|ref|ZP_07282337.1| RNA polymerase sigma factor RpoE... 301 3e-80 gi|284992570|ref|YP_003411124.1| ECF subfamily RNA polymerase si... 300 1e-79 gi|213964849|ref|ZP_03393048.1| RNA polymerase sigma-70 factor f... 292 2e-77 gi|291302639|ref|YP_003513917.1| ECF subfamily RNA polymerase si... 291 5e-77 gi|291454046|ref|ZP_06593436.1| RNA polymerase sigma factor RpoE... 291 6e-77 gi|319949916|ref|ZP_08023916.1| RNA polymerase sigma factor RpoE... 290 8e-77 gi|317508054|ref|ZP_07965740.1| TIGR02947 family RNA polymerase ... 289 2e-76 >gi|148824423|ref|YP_001289177.1| RNA polymerase sigma factor RpoE [Mycobacterium tuberculosis F11] gi|253800263|ref|YP_003033264.1| alternative RNA polymerase sigma factor sigH [Mycobacterium tuberculosis KZN 1435] gi|254365850|ref|ZP_04981895.1| alternative RNA polymerase sigma-e factor (sigma-24) sigH (rpoE) [Mycobacterium tuberculosis str. Haarlem] 16 more sequence titles Length=255 Score = 445 bits (1145), Expect = 2e-123, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 40 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 99 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH Sbjct 100 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 159 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 160 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 219 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS Sbjct 220 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 255 >gi|308232383|ref|ZP_07664071.1| RNA polymerase sigma-70 factor [Mycobacterium tuberculosis SUMu001] gi|308370195|ref|ZP_07666888.1| RNA polymerase sigma-70 factor [Mycobacterium tuberculosis SUMu002] gi|308371279|ref|ZP_07424416.2| alternative RNA polymerase sigma factor sigH [Mycobacterium tuberculosis SUMu003] 19 more sequence titles Length=240 Score = 444 bits (1142), Expect = 4e-123, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 25 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 84 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH Sbjct 85 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 144 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 145 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 204 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS Sbjct 205 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 240 >gi|339296053|gb|AEJ48164.1| RNA polymerase sigma factor RpoE [Mycobacterium tuberculosis CCDC5079] gi|339299663|gb|AEJ51773.1| RNA polymerase sigma factor RpoE [Mycobacterium tuberculosis CCDC5180] Length=248 Score = 444 bits (1142), Expect = 5e-123, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 33 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 92 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH Sbjct 93 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 152 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 153 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 212 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS Sbjct 213 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 248 >gi|15610359|ref|NP_217739.1| RNA polymerase sigma factor RpoE [Mycobacterium tuberculosis H37Rv] gi|31794402|ref|NP_856895.1| RNA polymerase sigma factor RpoE [Mycobacterium bovis AF2122/97] gi|121639111|ref|YP_979335.1| RNA polymerase sigma factor RpoE [Mycobacterium bovis BCG str. Pasteur 1173P2] 30 more sequence titles Length=216 Score = 443 bits (1139), Expect = 9e-123, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH Sbjct 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS Sbjct 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 >gi|15842811|ref|NP_337848.1| RNA polymerase sigma factor RpoE [Mycobacterium tuberculosis CDC1551] gi|13883138|gb|AAK47662.1| RNA polymerase sigma-70 factor, ECF subfamily [Mycobacterium tuberculosis CDC1551] Length=284 Score = 443 bits (1139), Expect = 1e-122, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 69 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 128 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH Sbjct 129 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 188 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 189 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 248 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS Sbjct 249 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 284 >gi|167966909|ref|ZP_02549186.1| RNA polymerase sigma factor RpoE [Mycobacterium tuberculosis H37Ra] Length=255 Score = 442 bits (1138), Expect = 1e-122, Method: Compositional matrix adjust. Identities = 215/216 (99%), Positives = 215/216 (99%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 40 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 99 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH Sbjct 100 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 159 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 160 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 219 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLRGLLADVA DRGFARGEQAHEGVSS Sbjct 220 MSRLHRGRRQLRGLLADVASDRGFARGEQAHEGVSS 255 >gi|254233836|ref|ZP_04927161.1| alternative RNA polymerase sigma-e factor (sigma-24) sigH (rpoE) [Mycobacterium tuberculosis C] gi|124599365|gb|EAY58469.1| alternative RNA polymerase sigma-e factor (sigma-24) sigH (rpoE) [Mycobacterium tuberculosis C] Length=255 Score = 442 bits (1136), Expect = 2e-122, Method: Compositional matrix adjust. Identities = 215/216 (99%), Positives = 215/216 (99%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 40 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 99 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH Sbjct 100 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 159 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 160 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 219 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLRGLLADVARDRGFARGEQAHE VSS Sbjct 220 MSRLHRGRRQLRGLLADVARDRGFARGEQAHERVSS 255 >gi|289575942|ref|ZP_06456169.1| alternative RNA polymerase sigma factor sigH [Mycobacterium tuberculosis K85] gi|339633232|ref|YP_004724874.1| alternative RNA polymerase sigma-E factor (SIGMA-24) SIGH (RPOE) [Mycobacterium africanum GM041182] gi|289540373|gb|EFD44951.1| alternative RNA polymerase sigma factor sigH [Mycobacterium tuberculosis K85] gi|339332588|emb|CCC28303.1| alternative RNA polymerase sigma-E factor (SIGMA-24) SIGH (RPOE) [Mycobacterium africanum GM041182] Length=216 Score = 441 bits (1135), Expect = 3e-122, Method: Compositional matrix adjust. Identities = 215/216 (99%), Positives = 216/216 (100%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH Sbjct 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPE+FRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 121 SSTGLRSAEVEALEALPDTEIKEALQALPEDFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS Sbjct 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 >gi|340628202|ref|YP_004746654.1| alternative RNA polymerase sigma-E factor [Mycobacterium canettii CIPT 140010059] gi|340006392|emb|CCC45572.1| alternative RNA polymerase sigma-E factor (sigma-24) SIGH (RPOE) [Mycobacterium canettii CIPT 140010059] Length=216 Score = 439 bits (1128), Expect = 2e-121, Method: Compositional matrix adjust. Identities = 213/216 (99%), Positives = 215/216 (99%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVTGSAG+QPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 1 MADIDGVTGSAGVQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH Sbjct 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLRGLLADVAR+RGF RGEQAHEGVSS Sbjct 181 MSRLHRGRRQLRGLLADVARERGFTRGEQAHEGVSS 216 >gi|240170387|ref|ZP_04749046.1| RNA polymerase sigma factor RpoE [Mycobacterium kansasii ATCC 12478] Length=243 Score = 395 bits (1015), Expect = 2e-108, Method: Compositional matrix adjust. Identities = 194/216 (90%), Positives = 201/216 (94%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDG T S P P ETDE+LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 28 MADIDGETWSEVPGPQPHAETDEQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 87 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPTE ITDWQLA+NAEH Sbjct 88 TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEAITDWQLAANAEH 147 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SS+GLRSAEVEALEALPD+EIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 148 SSSGLRSAEVEALEALPDSEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 207 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLR LLADVA++RGF RG+Q HE VSS Sbjct 208 MSRLHRGRRQLRALLADVAKERGFVRGDQPHEEVSS 243 >gi|342861182|ref|ZP_08717831.1| RNA polymerase sigma factor RpoE [Mycobacterium colombiense CECT 3035] gi|342131626|gb|EGT84896.1| RNA polymerase sigma factor RpoE [Mycobacterium colombiense CECT 3035] Length=220 Score = 391 bits (1005), Expect = 3e-107, Method: Compositional matrix adjust. Identities = 194/220 (89%), Positives = 201/220 (92%), Gaps = 4/220 (1%) Query 1 MADI----DGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAED 56 MAD DG TG +P P EETD ELTARFERDAIPLLDQLYGGALRMTRNPADAED Sbjct 1 MADFEDGRDGATGPGIPEPAPREETDAELTARFERDAIPLLDQLYGGALRMTRNPADAED 60 Query 57 LLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLAS 116 LLQETMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPTE+ITDWQLA+ Sbjct 61 LLQETMVKAYAGFRSFRAGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEEITDWQLAA 120 Query 117 NAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTP 176 NAEHSSTGLRSAEVEALEALPD+EIKEAL LPEEFRMAVYYADVEGFPYKEIAEIMDTP Sbjct 121 NAEHSSTGLRSAEVEALEALPDSEIKEALAELPEEFRMAVYYADVEGFPYKEIAEIMDTP 180 Query 177 IGTVMSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 IGTVMSRLHRGRRQLRGLLADVA++RGF RG+Q HE VSS Sbjct 181 IGTVMSRLHRGRRQLRGLLADVAKERGFNRGQQTHEEVSS 220 >gi|254819139|ref|ZP_05224140.1| RNA polymerase sigma factor RpoE [Mycobacterium intracellulare ATCC 13950] Length=220 Score = 391 bits (1005), Expect = 3e-107, Method: Compositional matrix adjust. Identities = 194/220 (89%), Positives = 205/220 (94%), Gaps = 4/220 (1%) Query 1 MAD-IDGVTGSAG---LQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAED 56 MAD +DG +AG +P EETD ELTARFERDAIPLLDQLYGGALRMTRNPADAED Sbjct 1 MADSLDGRDSAAGPSITEPAAPEETDAELTARFERDAIPLLDQLYGGALRMTRNPADAED 60 Query 57 LLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLAS 116 LLQETMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPTE+ITDWQLA+ Sbjct 61 LLQETMVKAYAGFRSFRAGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEEITDWQLAA 120 Query 117 NAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTP 176 NAEHSSTGLRSAEVEALE+LPD+EIK+ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTP Sbjct 121 NAEHSSTGLRSAEVEALESLPDSEIKDALQALPEEFRMAVYYADVEGFPYKEIAEIMDTP 180 Query 177 IGTVMSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 IGTVMSRLHRGRRQLRGLLADVA++RGF RG+QAHE VSS Sbjct 181 IGTVMSRLHRGRRQLRGLLADVAKERGFNRGQQAHEEVSS 220 >gi|296168999|ref|ZP_06850665.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896341|gb|EFG75997.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum ATCC BAA-614] Length=258 Score = 390 bits (1002), Expect = 8e-107, Method: Compositional matrix adjust. Identities = 192/216 (89%), Positives = 198/216 (92%), Gaps = 1/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MAD DG P P +ETD EL ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 44 MADTDGAAAQEISDP-PVQETDAELMARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 102 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKA+AGFRSFR GTNLKAWLYRILTNTYINSYRK+QRQPAEYPTE+ITDWQLASNAEH Sbjct 103 TMVKAFAGFRSFRAGTNLKAWLYRILTNTYINSYRKRQRQPAEYPTEEITDWQLASNAEH 162 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPD EIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 163 SSTGLRSAEVEALEALPDNEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 222 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLRGLLADVA++RGF RG QAHE VSS Sbjct 223 MSRLHRGRRQLRGLLADVAKERGFNRGHQAHEEVSS 258 >gi|183981357|ref|YP_001849648.1| alternative RNA polymerase sigma-E factor (sigma- 24) SigH (RpoE) [Mycobacterium marinum M] gi|183174683|gb|ACC39793.1| alternative RNA polymerase sigma-E factor (sigma- 24) SigH (RpoE) [Mycobacterium marinum M] Length=255 Score = 389 bits (1000), Expect = 1e-106, Method: Compositional matrix adjust. Identities = 198/216 (92%), Positives = 205/216 (95%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVT + P P EETDE+LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 40 MADIDGVTLAEAPDPEPPEETDEQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 99 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEH Sbjct 100 TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEH 159 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 160 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 219 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLR LLADVA++RGF RGEQAH+ VSS Sbjct 220 MSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 255 >gi|118618027|ref|YP_906359.1| RNA polymerase sigma factor RpoE [Mycobacterium ulcerans Agy99] gi|118570137|gb|ABL04888.1| alternative RNA polymerase sigma-E factor (sigma- 24) SigH (RpoE) [Mycobacterium ulcerans Agy99] Length=216 Score = 386 bits (991), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 197/216 (92%), Positives = 204/216 (95%), Gaps = 0/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MADIDGVT + P P EETDE+LTA FERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 1 MADIDGVTLAEAPDPEPPEETDEQLTACFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEH Sbjct 61 TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEH 120 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLR LLADVA++RGF RGEQAH+ VSS Sbjct 181 MSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 216 >gi|41409422|ref|NP_962258.1| RNA polymerase sigma factor RpoE [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398253|gb|AAS05874.1| SigH [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459508|gb|EGO38445.1| RNA polymerase sigma-70 factor, TIGR02947 family [Mycobacterium avium subsp. paratuberculosis S397] Length=268 Score = 385 bits (990), Expect = 2e-105, Method: Compositional matrix adjust. Identities = 186/198 (94%), Positives = 193/198 (98%), Gaps = 0/198 (0%) Query 19 EETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNL 78 EETD ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNL Sbjct 71 EETDAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRAGTNL 130 Query 79 KAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPD 138 KAWLYRILTNTYINSYRKKQRQPAEYPTE+ITDWQLASNAEHSSTGLRSAEVEALE+LPD Sbjct 131 KAWLYRILTNTYINSYRKKQRQPAEYPTEEITDWQLASNAEHSSTGLRSAEVEALESLPD 190 Query 139 TEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADV 198 +EIK+ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADV Sbjct 191 SEIKDALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADV 250 Query 199 ARDRGFARGEQAHEGVSS 216 A++RGF RG+Q HE VSS Sbjct 251 AKERGFNRGQQTHEEVSS 268 >gi|118465818|ref|YP_883317.1| RNA polymerase sigma factor RpoE [Mycobacterium avium 104] gi|118167105|gb|ABK68002.1| RNA polymerase sigma-70 factor, family protein [Mycobacterium avium 104] Length=268 Score = 385 bits (989), Expect = 2e-105, Method: Compositional matrix adjust. Identities = 186/198 (94%), Positives = 193/198 (98%), Gaps = 0/198 (0%) Query 19 EETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNL 78 EETD ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNL Sbjct 71 EETDAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRAGTNL 130 Query 79 KAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPD 138 KAWLYRILTNTYINSYRKKQRQPAEYPTE+ITDWQLASNAEHSSTGLRSAEVEALE+LPD Sbjct 131 KAWLYRILTNTYINSYRKKQRQPAEYPTEEITDWQLASNAEHSSTGLRSAEVEALESLPD 190 Query 139 TEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADV 198 +EIK+ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADV Sbjct 191 SEIKDALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADV 250 Query 199 ARDRGFARGEQAHEGVSS 216 A++RGF RG+Q HE VSS Sbjct 251 AKERGFNRGQQTHEEVSS 268 >gi|254776610|ref|ZP_05218126.1| RNA polymerase sigma factor RpoE [Mycobacterium avium subsp. avium ATCC 25291] Length=226 Score = 381 bits (979), Expect = 3e-104, Method: Compositional matrix adjust. Identities = 184/196 (94%), Positives = 191/196 (98%), Gaps = 0/196 (0%) Query 21 TDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKA 80 TD ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKA Sbjct 31 TDAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRAGTNLKA 90 Query 81 WLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTE 140 WLYRILTNTYINSYRKKQRQPAEYPTE+ITDWQLASNAEHSSTGLRSAEVEALE+LPD+E Sbjct 91 WLYRILTNTYINSYRKKQRQPAEYPTEEITDWQLASNAEHSSTGLRSAEVEALESLPDSE 150 Query 141 IKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVAR 200 IK+ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVA+ Sbjct 151 IKDALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVAK 210 Query 201 DRGFARGEQAHEGVSS 216 +RGF RG+Q HE VSS Sbjct 211 ERGFNRGQQTHEEVSS 226 >gi|108798350|ref|YP_638547.1| ECF subfamily RNA polymerase sigma-24 factor [Mycobacterium sp. MCS] gi|119867447|ref|YP_937399.1| ECF subfamily RNA polymerase sigma-24 factor [Mycobacterium sp. KMS] gi|126434015|ref|YP_001069706.1| ECF subfamily RNA polymerase sigma-24 factor [Mycobacterium sp. JLS] gi|108768769|gb|ABG07491.1| RNA polymerase, sigma-24 subunit, RpoE [Mycobacterium sp. MCS] gi|119693536|gb|ABL90609.1| RNA polymerase, sigma subunit, ECF family [Mycobacterium sp. KMS] gi|126233815|gb|ABN97215.1| RNA polymerase, sigma subunit, ECF family [Mycobacterium sp. JLS] Length=237 Score = 379 bits (973), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 188/216 (88%), Positives = 195/216 (91%), Gaps = 7/216 (3%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 M DIDG +ETD ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE Sbjct 29 MTDIDGAAAE-------RQETDAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 81 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQP+EYPTE+ITDWQLA+NAEH Sbjct 82 TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPSEYPTEEITDWQLAANAEH 141 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALE+LPDTEIK ALQALPE+FRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 142 SSTGLRSAEVEALESLPDTEIKAALQALPEDFRMAVYYADVEGFPYKEIAEIMDTPIGTV 201 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGR+QLR LLADVARDRGF RG QA E VSS Sbjct 202 MSRLHRGRKQLRELLADVARDRGFLRGAQAPEEVSS 237 >gi|333991577|ref|YP_004524191.1| RNA polymerase sigma-E factor (sigma- 24) SigH (RpoE) [Mycobacterium sp. JDM601] gi|333487545|gb|AEF36937.1| alternative RNA polymerase sigma-E factor (sigma- 24) SigH (RpoE) [Mycobacterium sp. JDM601] Length=244 Score = 377 bits (969), Expect = 5e-103, Method: Compositional matrix adjust. Identities = 186/216 (87%), Positives = 198/216 (92%), Gaps = 1/216 (0%) Query 1 MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 MAD + T + P S+ETDE+LTARFERDAIP+LDQLYGGALRMTRNPADAEDLLQE Sbjct 30 MADGESATETETTGPVRSDETDEQLTARFERDAIPMLDQLYGGALRMTRNPADAEDLLQE 89 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 TMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQR+PAEYPT++ITDWQLA+ AEH Sbjct 90 TMVKAYAGFRSFRDGTNLKAWLYRILTNTYINSYRKKQRKPAEYPTDEITDWQLAATAEH 149 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAEVEALE+LPDTEIK+ALQ LPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV Sbjct 150 SSTGLRSAEVEALESLPDTEIKDALQQLPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 209 Query 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216 MSRLHRGRRQLR LLADVARDRGF RG Q+ E VSS Sbjct 210 MSRLHRGRRQLRSLLADVARDRGFIRGGQSEE-VSS 244 >gi|120402777|ref|YP_952606.1| ECF subfamily RNA polymerase sigma-24 factor [Mycobacterium vanbaalenii PYR-1] gi|119955595|gb|ABM12600.1| RNA polymerase, sigma subunit, ECF family [Mycobacterium vanbaalenii PYR-1] Length=248 Score = 374 bits (960), Expect = 6e-102, Method: Compositional matrix adjust. Identities = 190/220 (87%), Positives = 196/220 (90%), Gaps = 4/220 (1%) Query 1 MADIDGVTGSAGL--QPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLL 58 M DI G A L + EETD ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLL Sbjct 29 MTDITGSAAEATLDGEAPAREETDAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLL 88 Query 59 QETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNA 118 QETMVKAY+GFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPTE+ITDWQLA+NA Sbjct 89 QETMVKAYSGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEEITDWQLAANA 148 Query 119 EHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIG 178 EHSSTGLRSAEVEALE LPD EIKEALQALP+EFRMAVYYADVEGFPYKEIAEIMDTPIG Sbjct 149 EHSSTGLRSAEVEALELLPDNEIKEALQALPDEFRMAVYYADVEGFPYKEIAEIMDTPIG 208 Query 179 TVMSRLHRGRRQLRGLLADVARDRGFARGEQ--AHEGVSS 216 TVMSRLHRGRRQLR LLA VARDRGF RGEQ A E V+S Sbjct 209 TVMSRLHRGRRQLRELLAGVARDRGFIRGEQVDAPEEVTS 248 >gi|145225267|ref|YP_001135945.1| ECF subfamily RNA polymerase sigma-24 factor [Mycobacterium gilvum PYR-GCK] gi|315445565|ref|YP_004078444.1| RNA polymerase sigma-70 factor, TIGR02947 family [Mycobacterium sp. Spyr1] gi|145217753|gb|ABP47157.1| RNA polymerase, sigma subunit, ECF family [Mycobacterium gilvum PYR-GCK] gi|315263868|gb|ADU00610.1| RNA polymerase sigma-70 factor, TIGR02947 family [Mycobacterium sp. Spyr1] Length=252 Score = 372 bits (955), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 188/224 (84%), Positives = 199/224 (89%), Gaps = 12/224 (5%) Query 1 MADIDGVTGSAGLQPGPS------EETDEELTARFERDAIPLLDQLYGGALRMTRNPADA 54 M D +G+ S P P+ EETD ELTARFERDAIPLLDQLYGGALRMTRNPADA Sbjct 33 MTDTNGLAAS----PAPADAGEAREETDAELTARFERDAIPLLDQLYGGALRMTRNPADA 88 Query 55 EDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQL 114 EDLLQETMVKAY+GFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPTE+ITDWQL Sbjct 89 EDLLQETMVKAYSGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEEITDWQL 148 Query 115 ASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMD 174 A+NAEH+STGLRSAEVEALE LPD+EIKEALQALPE+FRMAVYYADVEGFPYKEIAEIM+ Sbjct 149 AANAEHTSTGLRSAEVEALELLPDSEIKEALQALPEDFRMAVYYADVEGFPYKEIAEIME 208 Query 175 TPIGTVMSRLHRGRRQLRGLLADVARDRGFARGEQ--AHEGVSS 216 TPIGTVMSRLHRGRRQLR LLA VARDRGF RGEQ A E V+S Sbjct 209 TPIGTVMSRLHRGRRQLRELLAGVARDRGFIRGEQLEAPEEVTS 252 >gi|118469630|ref|YP_886280.1| RNA polymerase sigma-70 factor, family protein [Mycobacterium smegmatis str. MC2 155] gi|118170917|gb|ABK71813.1| RNA polymerase sigma-70 factor, family protein [Mycobacterium smegmatis str. MC2 155] Length=219 Score = 363 bits (933), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 178/191 (94%), Positives = 182/191 (96%), Gaps = 0/191 (0%) Query 22 DEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAW 81 D ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAW Sbjct 23 DAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAW 82 Query 82 LYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 141 LYRILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEI Sbjct 83 LYRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 142 Query 142 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARD 201 K ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARD Sbjct 143 KAALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARD 202 Query 202 RGFARGEQAHE 212 RGF RG Q E Sbjct 203 RGFIRGPQLGE 213 >gi|5305777|gb|AAD41810.1|AF144091_4 sigma factor SigH [Mycobacterium smegmatis str. MC2 155] Length=215 Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 178/191 (94%), Positives = 182/191 (96%), Gaps = 0/191 (0%) Query 22 DEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAW 81 D ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAW Sbjct 19 DAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAW 78 Query 82 LYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 141 LYRILTNTYINSYRKKQRQP+EYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEI Sbjct 79 LYRILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 138 Query 142 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARD 201 K ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VARD Sbjct 139 KAALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARD 198 Query 202 RGFARGEQAHE 212 RGF RG Q E Sbjct 199 RGFIRGPQLGE 209 >gi|226365811|ref|YP_002783594.1| RNA polymerase sigma factor RpoE [Rhodococcus opacus B4] gi|226244301|dbj|BAH54649.1| RNA polymerase ECF-type sigma factor SigH [Rhodococcus opacus B4] Length=245 Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 165/188 (88%), Positives = 176/188 (94%), Gaps = 0/188 (0%) Query 20 ETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLK 79 E +EL ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY FRSFR GTNLK Sbjct 39 EPQDELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFREGTNLK 98 Query 80 AWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDT 139 AWLYRILTNTYINSYRKKQRQPA+YPT++ITDWQLA+ AEHSSTGLRSAEVEAL+ALPD Sbjct 99 AWLYRILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEVEALDALPDD 158 Query 140 EIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVA 199 +IKEALQALPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLRGLLADVA Sbjct 159 DIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVA 218 Query 200 RDRGFARG 207 R+RGF RG Sbjct 219 RERGFNRG 226 >gi|111023304|ref|YP_706276.1| RNA polymerase sigma factor RpoE [Rhodococcus jostii RHA1] gi|110822834|gb|ABG98118.1| sigma factor, sigma 70 type, group 4 (ECF) [Rhodococcus jostii RHA1] Length=219 Score = 344 bits (882), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 165/188 (88%), Positives = 176/188 (94%), Gaps = 0/188 (0%) Query 20 ETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLK 79 E +EL ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY FRSFR GTNLK Sbjct 13 EPQDELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFREGTNLK 72 Query 80 AWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDT 139 AWLYRILTNTYINSYRKKQRQPA+YPT++ITDWQLA+ AEHSSTGLRSAEVEAL+ALPD Sbjct 73 AWLYRILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEVEALDALPDD 132 Query 140 EIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVA 199 +IKEALQALPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLRGLLADVA Sbjct 133 DIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVA 192 Query 200 RDRGFARG 207 R+RGF RG Sbjct 193 RERGFNRG 200 >gi|169630624|ref|YP_001704273.1| RNA polymerase sigma-E factor [Mycobacterium abscessus ATCC 19977] gi|169242591|emb|CAM63619.1| RNA polymerase sigma-E factor [Mycobacterium abscessus] Length=235 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 163/194 (85%), Positives = 177/194 (92%), Gaps = 0/194 (0%) Query 20 ETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLK 79 ET+ E ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QETMVKAYAGF +F+ GTNLK Sbjct 40 ETEAERVARFERDALPLLDQLYGAALRMTRNPADAEDLVQETMVKAYAGFGTFKEGTNLK 99 Query 80 AWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDT 139 AWLYRILTNTYIN YRKKQRQPAEYPTE+ITDWQLA+NAEH+STGLRSAE+EAL+ LPD Sbjct 100 AWLYRILTNTYINIYRKKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEIEALDGLPDD 159 Query 140 EIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVA 199 EIKEAL LPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLR LL++VA Sbjct 160 EIKEALNKLPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRDLLSEVA 219 Query 200 RDRGFARGEQAHEG 213 +DRGF R + EG Sbjct 220 KDRGFLRNNELAEG 233 >gi|226305673|ref|YP_002765633.1| RNA polymerase ECF-type sigma factor SigH [Rhodococcus erythropolis PR4] gi|226184790|dbj|BAH32894.1| putative RNA polymerase ECF-type sigma factor SigH [Rhodococcus erythropolis PR4] Length=232 Score = 340 bits (872), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 165/201 (83%), Positives = 179/201 (90%), Gaps = 0/201 (0%) Query 6 GVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKA 65 GVT + ET +EL ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKA Sbjct 13 GVTEPIDGAVSETPETADELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKA 72 Query 66 YAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGL 125 Y FRSFR GTNLKAWLYRILTNTYINSYRKKQRQPA+YPT++ITDWQLA+ AEH+STGL Sbjct 73 YTAFRSFRAGTNLKAWLYRILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHTSTGL 132 Query 126 RSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLH 185 RSAEVEAL+ALPD +IK ALQ+LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLH Sbjct 133 RSAEVEALDALPDDDIKAALQSLPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLH 192 Query 186 RGRRQLRGLLADVARDRGFAR 206 RGR+QLRGLLADVA+DRGF R Sbjct 193 RGRKQLRGLLADVAKDRGFNR 213 >gi|229489419|ref|ZP_04383282.1| RNA polymerase sigma-70 factor family protein [Rhodococcus erythropolis SK121] gi|229323516|gb|EEN89274.1| RNA polymerase sigma-70 factor family protein [Rhodococcus erythropolis SK121] Length=232 Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 162/187 (87%), Positives = 175/187 (94%), Gaps = 0/187 (0%) Query 20 ETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLK 79 ET +EL ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY FRSFR GTNLK Sbjct 27 ETPDELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFRAGTNLK 86 Query 80 AWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDT 139 AWLYRILTNTYINSYRKKQRQPA+YPT++ITDWQLA+ AEH+STGLRSAEVEAL+ALPD Sbjct 87 AWLYRILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHTSTGLRSAEVEALDALPDD 146 Query 140 EIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVA 199 +IK ALQ+LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLRGLLADVA Sbjct 147 DIKAALQSLPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVA 206 Query 200 RDRGFAR 206 +DRGF R Sbjct 207 KDRGFNR 213 >gi|326383289|ref|ZP_08204977.1| RNA polymerase sigma factor RpoE [Gordonia neofelifaecis NRRL B-59395] gi|326198039|gb|EGD55225.1| RNA polymerase sigma factor RpoE [Gordonia neofelifaecis NRRL B-59395] Length=261 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 159/189 (85%), Positives = 175/189 (93%), Gaps = 0/189 (0%) Query 18 SEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTN 77 S ET E+LT RFERDA+PLLDQ+YG ALRMTRNPADAEDL+QET +KA++ F+SFR GTN Sbjct 67 SAETPEQLTERFERDALPLLDQMYGAALRMTRNPADAEDLVQETYIKAFSAFKSFREGTN 126 Query 78 LKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALP 137 LKAWLYRILTNTYINSYRKKQRQPA+YPT++ITDWQLA+ AEHSSTGLRSAE+EAL+ALP Sbjct 127 LKAWLYRILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEIEALDALP 186 Query 138 DTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLAD 197 D EIKEAL LPE+FRMAVYYADVEG PYKEIAEIMDTPIGTVMSRLHRGRRQLR LLAD Sbjct 187 DDEIKEALSKLPEDFRMAVYYADVEGLPYKEIAEIMDTPIGTVMSRLHRGRRQLRDLLAD 246 Query 198 VARDRGFAR 206 VAR+RGF R Sbjct 247 VARERGFGR 255 >gi|312140655|ref|YP_004007991.1| sigma-70 factor [Rhodococcus equi 103S] gi|311889994|emb|CBH49312.1| sigma-70 factor [Rhodococcus equi 103S] Length=271 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 161/192 (84%), Positives = 176/192 (92%), Gaps = 0/192 (0%) Query 16 GPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHG 75 G E+ ++L RFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY+ FRSF+ G Sbjct 60 GDGPESQDQLIERFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYSAFRSFKEG 119 Query 76 TNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEA 135 TNLKAWLYRILTNTYINSYRKKQRQPA+YPT++ITDWQLA+ AEHSSTGLRSAEVEAL+A Sbjct 120 TNLKAWLYRILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEVEALDA 179 Query 136 LPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLL 195 LPD +IK ALQ LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLRGLL Sbjct 180 LPDDDIKAALQELPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLL 239 Query 196 ADVARDRGFARG 207 ADVAR+RGF RG Sbjct 240 ADVARERGFNRG 251 >gi|325675715|ref|ZP_08155399.1| RNA polymerase sigma factor RpoE [Rhodococcus equi ATCC 33707] gi|325553686|gb|EGD23364.1| RNA polymerase sigma factor RpoE [Rhodococcus equi ATCC 33707] Length=287 Score = 338 bits (866), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 161/192 (84%), Positives = 176/192 (92%), Gaps = 0/192 (0%) Query 16 GPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHG 75 G E+ ++L RFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY+ FRSF+ G Sbjct 76 GDGPESQDQLIERFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYSAFRSFKEG 135 Query 76 TNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEA 135 TNLKAWLYRILTNTYINSYRKKQRQPA+YPT++ITDWQLA+ AEHSSTGLRSAEVEAL+A Sbjct 136 TNLKAWLYRILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEVEALDA 195 Query 136 LPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLL 195 LPD +IK ALQ LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLRGLL Sbjct 196 LPDDDIKAALQELPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLL 255 Query 196 ADVARDRGFARG 207 ADVAR+RGF RG Sbjct 256 ADVARERGFNRG 267 >gi|54026557|ref|YP_120799.1| RNA polymerase sigma factor RpoE [Nocardia farcinica IFM 10152] gi|54018065|dbj|BAD59435.1| putative sigma factor [Nocardia farcinica IFM 10152] Length=217 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 164/212 (78%), Positives = 182/212 (86%), Gaps = 3/212 (1%) Query 1 MADIDGVTGSAGLQPGPSEET--DE-ELTARFERDAIPLLDQLYGGALRMTRNPADAEDL 57 M D V AG + T DE EL RFERDA+PLLDQLYG ALRMTRNPADAEDL Sbjct 1 MTSDDDVVSDAGTTDAETAGTPVDEAELAQRFERDALPLLDQLYGAALRMTRNPADAEDL 60 Query 58 LQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASN 117 +QET VKA+ GF+SF+ GTNL+AWLYRILTNTYINSYRKKQRQPA+YPT++ITDWQLA+ Sbjct 61 VQETYVKAFQGFKSFKEGTNLRAWLYRILTNTYINSYRKKQRQPAQYPTDEITDWQLAAT 120 Query 118 AEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPI 177 AEH+STGLRSAEVEAL+ALPD +IK ALQ LPEEFRMAVYYADVEGFPYKEIAEIM TPI Sbjct 121 AEHTSTGLRSAEVEALDALPDDDIKAALQELPEEFRMAVYYADVEGFPYKEIAEIMGTPI 180 Query 178 GTVMSRLHRGRRQLRGLLADVARDRGFARGEQ 209 GTVMSRLHRGR+QL+GLLADVAR+RGF R E+ Sbjct 181 GTVMSRLHRGRKQLKGLLADVARERGFNRSER 212 >gi|333921434|ref|YP_004495015.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1] gi|333483655|gb|AEF42215.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1] Length=218 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 157/192 (82%), Positives = 177/192 (93%), Gaps = 1/192 (0%) Query 17 PSE-ETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHG 75 PS+ ET E++ ARFERDA+PL+DQLYG ALRMTRNPADAEDL+QET +KAY+ F SF+ G Sbjct 14 PSQGETPEQMIARFERDAMPLIDQLYGAALRMTRNPADAEDLVQETYLKAYSAFSSFKEG 73 Query 76 TNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEA 135 TNLKAWLYRILTNTYIN YRK+QRQPA+YPTE+ITDWQ+A+ AEHSSTGLRSAEVEALEA Sbjct 74 TNLKAWLYRILTNTYINGYRKRQRQPAQYPTEEITDWQIAAAAEHSSTGLRSAEVEALEA 133 Query 136 LPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLL 195 LPD +IK ALQ+LP+EFRMAVYYADVEGFPYK+IAEIM TPIGTVMSRLHRGR+QLRG+L Sbjct 134 LPDDDIKNALQSLPDEFRMAVYYADVEGFPYKDIAEIMGTPIGTVMSRLHRGRKQLRGML 193 Query 196 ADVARDRGFARG 207 ADVARDRGF R Sbjct 194 ADVARDRGFNRS 205 >gi|262203403|ref|YP_003274611.1| RNA polymerase sigma-70 factor [Gordonia bronchialis DSM 43247] gi|262086750|gb|ACY22718.1| RNA polymerase sigma-70 factor [Gordonia bronchialis DSM 43247] Length=295 Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 157/187 (84%), Positives = 171/187 (92%), Gaps = 0/187 (0%) Query 20 ETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLK 79 ET E+LT RFERDA+PLLDQ+YG ALRMTRNP+DAEDL+QET VKA+ F SFR GTNLK Sbjct 92 ETPEQLTERFERDALPLLDQMYGAALRMTRNPSDAEDLVQETYVKAFTAFASFREGTNLK 151 Query 80 AWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDT 139 AWLYRILTNTYIN YRKKQRQPA+YPT++ITDWQLA+ AEH+STGLRSAE+EAL+ALPD Sbjct 152 AWLYRILTNTYINGYRKKQRQPAQYPTDEITDWQLAATAEHTSTGLRSAEIEALDALPDD 211 Query 140 EIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVA 199 EIK ALQ LPEEFRMAVYYADVEG PYKEIAEIMDTPIGTVMSRLHRGRRQLR LLADVA Sbjct 212 EIKAALQELPEEFRMAVYYADVEGLPYKEIAEIMDTPIGTVMSRLHRGRRQLRELLADVA 271 Query 200 RDRGFAR 206 R+RGF R Sbjct 272 RERGFNR 278 >gi|343927614|ref|ZP_08767082.1| RNA polymerase ECF-type sigma factor SigH [Gordonia alkanivorans NBRC 16433] gi|343762255|dbj|GAA14008.1| RNA polymerase ECF-type sigma factor SigH [Gordonia alkanivorans NBRC 16433] Length=277 Score = 330 bits (846), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 156/191 (82%), Positives = 171/191 (90%), Gaps = 0/191 (0%) Query 20 ETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLK 79 E+ EELT RFERDA+PLLDQ+YG ALRMTRNPADAEDL+QET +KA+ F SFR GTNLK Sbjct 80 ESPEELTERFERDALPLLDQMYGAALRMTRNPADAEDLVQETYIKAFTAFASFREGTNLK 139 Query 80 AWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDT 139 AWLYRILTNTYIN YRKKQRQPA+YPT++ITDWQLA+ AEH+S GLRSAE+EAL+ALPD Sbjct 140 AWLYRILTNTYINGYRKKQRQPAQYPTDEITDWQLAATAEHTSQGLRSAEIEALDALPDD 199 Query 140 EIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVA 199 EIK ALQ LPE+FRMAVYYADVEG PYKEIAEIMDTPIGTVMSRLHRGRRQLR LLADVA Sbjct 200 EIKAALQELPEDFRMAVYYADVEGLPYKEIAEIMDTPIGTVMSRLHRGRRQLRELLADVA 259 Query 200 RDRGFARGEQA 210 R+RGF R A Sbjct 260 RERGFHRSATA 270 >gi|296138835|ref|YP_003646078.1| ECF subfamily RNA polymerase sigma-24 subunit [Tsukamurella paurometabola DSM 20162] gi|296026969|gb|ADG77739.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Tsukamurella paurometabola DSM 20162] Length=226 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 161/206 (79%), Positives = 178/206 (87%), Gaps = 2/206 (0%) Query 3 DIDGVT--GSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60 DI VT A +P E++E+LTARFE +A+PLLDQLYG ALRMTRNPADAEDL+QE Sbjct 5 DITDVTELDQASGEPDTEVESEEQLTARFEAEALPLLDQLYGAALRMTRNPADAEDLVQE 64 Query 61 TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120 T VKAY+ FRSFR GTNLKAWLYRILTNTYIN YRKKQRQPA+YPT++ITDWQLA+ AEH Sbjct 65 TYVKAYSAFRSFRKGTNLKAWLYRILTNTYINGYRKKQRQPAQYPTDEITDWQLAATAEH 124 Query 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180 SSTGLRSAE+EAL+ALPD EIK+AL LPE+FRMAVYYADVEGFPYKEIAEIM TPIGTV Sbjct 125 SSTGLRSAEIEALDALPDDEIKQALAKLPEDFRMAVYYADVEGFPYKEIAEIMGTPIGTV 184 Query 181 MSRLHRGRRQLRGLLADVARDRGFAR 206 MSRLHRGRRQLR L VAR+RGF R Sbjct 185 MSRLHRGRRQLRTELEGVARERGFLR 210 >gi|331698907|ref|YP_004335146.1| ECF subfamily RNA polymerase sigma-24 subunit [Pseudonocardia dioxanivorans CB1190] gi|326953596|gb|AEA27293.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Pseudonocardia dioxanivorans CB1190] Length=264 Score = 321 bits (822), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 153/201 (77%), Positives = 170/201 (85%), Gaps = 0/201 (0%) Query 9 GSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAG 68 S + P +ET EE ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET +KAY+ Sbjct 59 ASTSAERAPVDETTEERAARFERDAMPLLDQLYGAALRMTRNPADAEDLVQETFLKAYSA 118 Query 69 FRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSA 128 F +FR GTNLKAWLYRILTNTYIN YRK+QRQP + PTE+ITDWQLA EHSSTGLRSA Sbjct 119 FHTFRQGTNLKAWLYRILTNTYINGYRKRQRQPQQSPTEEITDWQLAQAGEHSSTGLRSA 178 Query 129 EVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGR 188 EVEA++ LPD ++K ALQALPE+FRMAVY ADVEGF YKEIAEIM TPIGTVMSRLHRGR Sbjct 179 EVEAMDNLPDDDVKAALQALPEDFRMAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGR 238 Query 189 RQLRGLLADVARDRGFARGEQ 209 RQLR +L D AR+RGF RGEQ Sbjct 239 RQLRDMLTDTARERGFVRGEQ 259 >gi|324998108|ref|ZP_08119220.1| RNA polymerase, sigma-24 subunit, ECF subfamily protein [Pseudonocardia sp. P1] Length=275 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 149/191 (79%), Positives = 169/191 (89%), Gaps = 0/191 (0%) Query 17 PSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGT 76 P +E+ EE TARFERDA+P+LDQLYG ALRMTRNPADAEDL+QET +KAY+ F SFR GT Sbjct 77 PEDESVEERTARFERDAMPMLDQLYGAALRMTRNPADAEDLVQETFLKAYSAFGSFRRGT 136 Query 77 NLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEAL 136 NLKAWLYRILTNTYIN YRK+QRQP + PT++ITD+QLA EH+STGLRSAEVEAL+AL Sbjct 137 NLKAWLYRILTNTYINGYRKRQRQPLQSPTDEITDYQLAQAGEHTSTGLRSAEVEALDAL 196 Query 137 PDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLA 196 PD+++KEALQ LPE+FR+AVY ADVEGF YKEIAEIM TPIGTVMSRLHRGRRQLR +L Sbjct 197 PDSDVKEALQGLPEDFRIAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRRQLREMLT 256 Query 197 DVARDRGFARG 207 DVARDRG RG Sbjct 257 DVARDRGIVRG 267 >gi|126215788|gb|ABN81014.1| putative sigma factor sigma 70 type group 4 (ECF) [Rhodococcus opacus] Length=169 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 149/168 (89%), Positives = 158/168 (95%), Gaps = 0/168 (0%) Query 40 LYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQR 99 LYG ALRMTRNPADAEDL+QET VKAY FRSFR GTNLKAWLYRILTNTYINSYRKKQR Sbjct 1 LYGAALRMTRNPADAEDLVQETYVKAYTAFRSFREGTNLKAWLYRILTNTYINSYRKKQR 60 Query 100 QPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYA 159 QPA+YPT++ITD QLA+ AEHSSTGLRSAEVEAL+ALPD +IKEALQALPEEFRMAVYYA Sbjct 61 QPAQYPTDEITDRQLAATAEHSSTGLRSAEVEALDALPDDDIKEALQALPEEFRMAVYYA 120 Query 160 DVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRGFARG 207 DVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLRGLLADVAR+RGF RG Sbjct 121 DVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVARERGFNRG 168 >gi|257057043|ref|YP_003134875.1| RNA polymerase sigma-70 factor [Saccharomonospora viridis DSM 43017] gi|256586915|gb|ACU98048.1| RNA polymerase sigma-70 factor, TIGR02947 family [Saccharomonospora viridis DSM 43017] Length=216 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 143/196 (73%), Positives = 164/196 (84%), Gaps = 0/196 (0%) Query 17 PSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGT 76 P T+ EL RFER+A+PL+DQLY A+RMTRNPADAEDL+QET ++AYA F SF+ GT Sbjct 17 PGTNTERELAERFEREAMPLVDQLYSAAMRMTRNPADAEDLVQETYLRAYAAFSSFKEGT 76 Query 77 NLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEAL 136 NLKAW+YRILTNTYIN YRK+QRQP + PTE+ITDWQLA H+S GLRSAEVEAL+ L Sbjct 77 NLKAWMYRILTNTYINGYRKRQRQPVQQPTEEITDWQLAKAESHTSAGLRSAEVEALDKL 136 Query 137 PDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLA 196 PDT++K ALQ LPE+FR+AVY ADVEGF YKEIAEIM+TPIGTVMSRLHRGR QLR LLA Sbjct 137 PDTDVKAALQQLPEDFRLAVYLADVEGFAYKEIAEIMNTPIGTVMSRLHRGRGQLRSLLA 196 Query 197 DVARDRGFARGEQAHE 212 DVAR+RGF R Q E Sbjct 197 DVARERGFIRSGQQRE 212 >gi|256380282|ref|YP_003103942.1| ECF subfamily RNA polymerase sigma-24 subunit [Actinosynnema mirum DSM 43827] gi|255924585|gb|ACU40096.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Actinosynnema mirum DSM 43827] Length=219 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 146/191 (77%), Positives = 164/191 (86%), Gaps = 0/191 (0%) Query 19 EETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNL 78 EET ++ ARFERDA+P+LDQLY ALRMTRNPADAEDL+QET +KAYA F SF GTNL Sbjct 23 EETADQRAARFERDAMPMLDQLYSAALRMTRNPADAEDLVQETYLKAYAAFASFSEGTNL 82 Query 79 KAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPD 138 KAWLYRILTNTYIN YRKKQRQP + PT++ITDWQLA H+S+GLRSAEVEA++ LPD Sbjct 83 KAWLYRILTNTYINGYRKKQRQPLQQPTDEITDWQLAQAESHTSSGLRSAEVEAMDRLPD 142 Query 139 TEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADV 198 T++KEALQ LPEEFR+AVY ADVEGF YKEIA+IM TPIGTVMSRLHRGRRQLR LAD Sbjct 143 TDVKEALQRLPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLREQLADT 202 Query 199 ARDRGFARGEQ 209 AR+RGF RG Q Sbjct 203 ARERGFLRGGQ 213 >gi|300789790|ref|YP_003770081.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis mediterranei U32] gi|299799304|gb|ADJ49679.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis mediterranei U32] gi|340531458|gb|AEK46663.1| RNA polymerase sigma-70 factor, ECF subfamily protein [Amycolatopsis mediterranei S699] Length=207 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 141/181 (78%), Positives = 159/181 (88%), Gaps = 0/181 (0%) Query 29 FERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTN 88 FERDA+PLLDQLY A+RMTRNPADAEDL+QET +KAYA F SF+ GTNLKAW+YRILTN Sbjct 21 FERDAMPLLDQLYSAAMRMTRNPADAEDLVQETYLKAYAAFASFKAGTNLKAWMYRILTN 80 Query 89 TYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQAL 148 TYIN YRK+QRQP + PTE+ITDWQ+A H+S+GLRSAEVEA++ LPDT++K ALQ L Sbjct 81 TYINGYRKRQRQPVQAPTEEITDWQIAKAENHTSSGLRSAEVEAMDNLPDTDVKAALQKL 140 Query 149 PEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARDRGFARGE 208 PEEFR+AVY ADVEGF YKEIAEIMDTPIGTVMSRLHRGR QLR LLADVAR+RGF RG Sbjct 141 PEEFRLAVYLADVEGFAYKEIAEIMDTPIGTVMSRLHRGRAQLRDLLADVARERGFIRGA 200 Query 209 Q 209 Q Sbjct 201 Q 201 >gi|302529995|ref|ZP_07282337.1| RNA polymerase sigma factor RpoE [Streptomyces sp. AA4] gi|302438890|gb|EFL10706.1| RNA polymerase sigma factor RpoE [Streptomyces sp. AA4] Length=225 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 143/195 (74%), Positives = 165/195 (85%), Gaps = 1/195 (0%) Query 16 GPSEETDE-ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRH 74 P DE EL RFERDA+PLLDQLY A+RMTRNP+DAEDL+QET +KAYA F SF+ Sbjct 25 APETAADELELAERFERDAMPLLDQLYAAAMRMTRNPSDAEDLVQETYLKAYAAFASFKA 84 Query 75 GTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALE 134 GTNLKAW+YRILTNTYIN YRK+QRQP + PT++I+DWQ+A H+S+GLRSAEVEA++ Sbjct 85 GTNLKAWMYRILTNTYINGYRKRQRQPVQQPTDEISDWQIARAESHTSSGLRSAEVEAMD 144 Query 135 ALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGL 194 LPDT++K ALQ LPEEFR+AVY ADVEGF YKEIAEIMDTPIGTVMSRLHRGR QLR L Sbjct 145 NLPDTDVKAALQKLPEEFRLAVYLADVEGFAYKEIAEIMDTPIGTVMSRLHRGRAQLRDL 204 Query 195 LADVARDRGFARGEQ 209 LADVAR+RGF RG + Sbjct 205 LADVARERGFIRGNR 219 >gi|284992570|ref|YP_003411124.1| ECF subfamily RNA polymerase sigma-24 subunit [Geodermatophilus obscurus DSM 43160] gi|284065815|gb|ADB76753.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Geodermatophilus obscurus DSM 43160] Length=249 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 147/195 (76%), Positives = 165/195 (85%), Gaps = 3/195 (1%) Query 19 EETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNL 78 +ET E ARFERDA+P LDQLY ALRMTRNPADAEDL+QET VKAY+ F F GTNL Sbjct 52 DETRAERDARFERDALPYLDQLYPAALRMTRNPADAEDLVQETFVKAYSAFHQFAEGTNL 111 Query 79 KAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPD 138 KAWLYRILTNTYINSYRKKQRQP +YPT+Q+ DWQL + EHSS+GLRSAE+EAL+ LPD Sbjct 112 KAWLYRILTNTYINSYRKKQRQPQQYPTDQVQDWQLYAAEEHSSSGLRSAEIEALDHLPD 171 Query 139 TEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADV 198 ++IKEALQ LPE+FR+AVY ADVEGF YKEIAEIM TPIGTVMSRLHRGRR L+ LLAD Sbjct 172 SDIKEALQQLPEDFRLAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRRGLQKLLADY 231 Query 199 ARDRGFAR---GEQA 210 AR+RGF R GE+A Sbjct 232 ARERGFVRAGAGEEA 246 >gi|213964849|ref|ZP_03393048.1| RNA polymerase sigma-70 factor family protein [Corynebacterium amycolatum SK46] gi|213952385|gb|EEB63768.1| RNA polymerase sigma-70 factor family protein [Corynebacterium amycolatum SK46] Length=209 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 141/202 (70%), Positives = 169/202 (84%), Gaps = 3/202 (1%) Query 8 TGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYA 67 TG++ ++ ++E+DEEL RFERDA+PLLDQLYG ALRMTRNPADAEDL+QET +KA+ Sbjct 6 TGTSAIR---TDESDEELAQRFERDAMPLLDQLYGAALRMTRNPADAEDLVQETYIKAFQ 62 Query 68 GFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRS 127 GF S++ GTNLKAWLYRILTN YIN+YRK QR+PAEY T+ ITD Q+A A H+S GLRS Sbjct 63 GFCSYKPGTNLKAWLYRILTNAYINNYRKAQRRPAEYATDDITDSQIAETASHTSLGLRS 122 Query 128 AEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRG 187 AEVEALE LPD EI++AL +L E++RM VYYADVEG PYKEIAEIM TPIGTVMSRLHRG Sbjct 123 AEVEALEKLPDEEIRDALMSLKEDYRMVVYYADVEGLPYKEIAEIMGTPIGTVMSRLHRG 182 Query 188 RRQLRGLLADVARDRGFARGEQ 209 R+QLR L +VA +RGF + E+ Sbjct 183 RKQLRDALHNVAVERGFLKEEK 204 >gi|291302639|ref|YP_003513917.1| ECF subfamily RNA polymerase sigma-24 subunit [Stackebrandtia nassauensis DSM 44728] gi|290571859|gb|ADD44824.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Stackebrandtia nassauensis DSM 44728] Length=263 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 140/196 (72%), Positives = 164/196 (84%), Gaps = 1/196 (0%) Query 20 ETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLK 79 ET E ARFERDA+PL+DQLYGGALRMTRNP DAEDL+QET +KA++ F F+ GTNL+ Sbjct 68 ETAAEKRARFERDAMPLVDQLYGGALRMTRNPQDAEDLVQETYLKAFSAFHQFKAGTNLR 127 Query 80 AWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDT 139 AW+YRILTNTYINSYRK++RQP + PTE+ITDWQL S H+STGLRSAE EAL+ LPD+ Sbjct 128 AWMYRILTNTYINSYRKRKRQPVQSPTEEITDWQLVSAESHTSTGLRSAETEALDRLPDS 187 Query 140 EIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVA 199 ++K+AL LPEEFR+AVY ADVEGF YKEIAEIM TPIGTVMSRLHRGRRQLR +LA+ A Sbjct 188 DVKDALARLPEEFRLAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRRQLRDMLAEYA 247 Query 200 RDRGFARGEQAHEGVS 215 RGF+ + HE VS Sbjct 248 AQRGFSASDD-HEEVS 262 >gi|291454046|ref|ZP_06593436.1| RNA polymerase sigma factor RpoE [Streptomyces albus J1074] gi|291356995|gb|EFE83897.1| RNA polymerase sigma factor RpoE [Streptomyces albus J1074] Length=227 Score = 291 bits (744), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 145/207 (71%), Positives = 164/207 (80%), Gaps = 3/207 (1%) Query 1 MADIDGVTGS-AGLQ--PGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDL 57 M ++ VTG+ AG Q P EET E TARFERDA+ LDQ+Y ALRMTRNPADAEDL Sbjct 1 MKEVGPVTGTDAGSQDVPEKPEETSAERTARFERDALAFLDQMYSAALRMTRNPADAEDL 60 Query 58 LQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASN 117 +QET KAYA F FR GTNLKAWLYRILTNT+INSYRKKQR+P E+I DWQLA Sbjct 61 VQETYAKAYASFHQFREGTNLKAWLYRILTNTFINSYRKKQREPQRSAAEEIEDWQLARA 120 Query 118 AEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPI 177 H STGLRSAE +AL+ LPD+++K ALQA+PEEFR+AVY ADVEGF YKEIA+IM TPI Sbjct 121 ESHMSTGLRSAESQALDHLPDSDVKSALQAIPEEFRIAVYLADVEGFAYKEIADIMGTPI 180 Query 178 GTVMSRLHRGRRQLRGLLADVARDRGF 204 GTVMSRLHRGRRQLRG+L D AR+RG Sbjct 181 GTVMSRLHRGRRQLRGMLEDYARERGL 207 >gi|319949916|ref|ZP_08023916.1| RNA polymerase sigma factor RpoE [Dietzia cinnamea P4] gi|319436417|gb|EFV91537.1| RNA polymerase sigma factor RpoE [Dietzia cinnamea P4] Length=225 Score = 290 bits (743), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 140/194 (73%), Positives = 163/194 (85%), Gaps = 4/194 (2%) Query 13 LQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSF 72 LQP +++ E+ FE A+PLLDQLYG ALRMTRNPADAEDL+QE KA+AGF SF Sbjct 29 LQPDEADQRAEQ----FEELAMPLLDQLYGAALRMTRNPADAEDLVQEAYAKAFAGFHSF 84 Query 73 RHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEA 132 + GTN +AW++RILTN YIN YRK+QRQPA+YPT++ITDWQLA+ AEH+STGLRSAEVEA Sbjct 85 KPGTNFRAWMHRILTNAYINHYRKRQRQPAQYPTDEITDWQLAAAAEHTSTGLRSAEVEA 144 Query 133 LEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLR 192 +E LPD EI+ AL LPEEFRMAVYYADV+ PYKEIAEIMDTP+GTVMSRLHRGR+QLR Sbjct 145 MELLPDDEIRAALAELPEEFRMAVYYADVQDLPYKEIAEIMDTPLGTVMSRLHRGRKQLR 204 Query 193 GLLADVARDRGFAR 206 LL DVA +RGF R Sbjct 205 ELLRDVAAERGFGR 218 >gi|317508054|ref|ZP_07965740.1| TIGR02947 family RNA polymerase sigma-70 factor [Segniliparus rugosus ATCC BAA-974] gi|316253650|gb|EFV13034.1| TIGR02947 family RNA polymerase sigma-70 factor [Segniliparus rugosus ATCC BAA-974] Length=221 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/198 (69%), Positives = 163/198 (83%), Gaps = 0/198 (0%) Query 7 VTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAY 66 V G A PG S+E+ ELT RFE++A+PLLD+LY A+RMT NP DAEDL+QET +KA+ Sbjct 3 VKGPADESPGGSDESQAELTRRFEQEAMPLLDKLYWAAMRMTHNPQDAEDLVQETYIKAF 62 Query 67 AGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLR 126 F +F GTNL AWL+RILTNTYINSYRK+QRQP++YPT++ITDWQLA A H S GLR Sbjct 63 GAFHTFAEGTNLSAWLHRILTNTYINSYRKRQRQPSQYPTDEITDWQLADVASHDSVGLR 122 Query 127 SAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHR 186 SAEVEAL+ LPDTEI +ALQ+LPE+FRM VYYADVEGFPY+EIAEI++ PIGTVMSRLHR Sbjct 123 SAEVEALDGLPDTEIMKALQSLPEDFRMVVYYADVEGFPYREIAEILEIPIGTVMSRLHR 182 Query 187 GRRQLRGLLADVARDRGF 204 GR+QLR LA +A + G Sbjct 183 GRKQLRAQLAGLAAEYGI 200 Lambda K H 0.315 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 260686263632 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40