BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3224A

Length=62
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|31794404|ref|NP_856897.1|  hypothetical protein Mb3252 [Mycoba...   121    3e-26
gi|148824425|ref|YP_001289179.1|  hypothetical protein TBFG_13252...   119    2e-25
gi|340628204|ref|YP_004746656.1|  hypothetical protein MCAN_32431...  41.2    0.054
gi|254819141|ref|ZP_05224142.1|  hypothetical protein MintA_04404...  39.7    0.15 
gi|5305776|gb|AAD41809.1|AF144091_3  unknown [Mycobacterium smegm...  36.6    1.4  
gi|118470403|ref|YP_886279.1|  YbaK/ebsC protein [Mycobacterium s...  36.6    1.4  
gi|326381836|ref|ZP_08203529.1|  hypothetical protein SCNU_02782 ...  35.8    2.2  
gi|183981355|ref|YP_001849646.1|  hypothetical protein MMAR_1332 ...  35.8    2.4  
gi|15827348|ref|NP_301611.1|  hypothetical protein ML0799 [Mycoba...  35.8    2.5  
gi|118618029|ref|YP_906361.1|  hypothetical protein MUL_2547 [Myc...  35.0    3.7  
gi|283458263|ref|YP_003362882.1|  hypothetical protein RMDY18_123...  34.7    4.9  
gi|120402776|ref|YP_952605.1|  ybaK/ebsC protein [Mycobacterium v...  33.5    9.8  


>gi|31794404|ref|NP_856897.1| hypothetical protein Mb3252 [Mycobacterium bovis AF2122/97]
 gi|57117076|ref|YP_177946.1| hypothetical protein Rv3224A [Mycobacterium tuberculosis H37Rv]
 gi|121639113|ref|YP_979337.1| hypothetical protein BCG_3253 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 45 more sequence titles
 
gi|121639205|ref|YP_979429.1| hypothetical protein BCG_3346 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|167966907|ref|ZP_02549184.1| hypothetical protein MtubH3_02140 [Mycobacterium tuberculosis 
H37Ra]
 gi|224991605|ref|YP_002646294.1| hypothetical protein JTY_3248 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253800265|ref|YP_003033266.1| hypothetical protein TBMG_03271 [Mycobacterium tuberculosis KZN 
1435]
 gi|254365852|ref|ZP_04981897.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254552327|ref|ZP_05142774.1| hypothetical protein Mtube_18053 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|289444800|ref|ZP_06434544.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289448912|ref|ZP_06438656.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555502|ref|ZP_06444712.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289571449|ref|ZP_06451676.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289575944|ref|ZP_06456171.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289747042|ref|ZP_06506420.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751916|ref|ZP_06511294.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289759362|ref|ZP_06518740.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289763412|ref|ZP_06522790.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294993837|ref|ZP_06799528.1| hypothetical protein Mtub2_04801 [Mycobacterium tuberculosis 
210]
 gi|297635876|ref|ZP_06953656.1| hypothetical protein MtubK4_17212 [Mycobacterium tuberculosis 
KZN 4207]
 gi|297732873|ref|ZP_06961991.1| hypothetical protein MtubKR_17367 [Mycobacterium tuberculosis 
KZN R506]
 gi|306969319|ref|ZP_07481980.1| hypothetical protein TMIG_02740 [Mycobacterium tuberculosis SUMu009]
 gi|306973671|ref|ZP_07486332.1| hypothetical protein TMJG_03408 [Mycobacterium tuberculosis SUMu010]
 gi|313660205|ref|ZP_07817085.1| hypothetical protein MtubKV_17367 [Mycobacterium tuberculosis 
KZN V2475]
 gi|339633234|ref|YP_004724876.1| hypothetical protein MAF_32350 [Mycobacterium africanum GM041182]
 gi|31620000|emb|CAD95344.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|38490341|emb|CAE55570.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121494761|emb|CAL73242.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|121494853|emb|CAL73335.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|134151365|gb|EBA43410.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|224774720|dbj|BAH27526.1| hypothetical protein JTY_3248 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253321768|gb|ACT26371.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
1435]
 gi|289417719|gb|EFD14959.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289421870|gb|EFD19071.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289440134|gb|EFD22627.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289540375|gb|EFD44953.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289545203|gb|EFD48851.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289687570|gb|EFD55058.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289692503|gb|EFD59932.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289710918|gb|EFD74934.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289714926|gb|EFD78938.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|308353171|gb|EFP42022.1| hypothetical protein TMIG_02740 [Mycobacterium tuberculosis SUMu009]
 gi|308356913|gb|EFP45764.1| hypothetical protein TMJG_03408 [Mycobacterium tuberculosis SUMu010]
 gi|326902546|gb|EGE49479.1| hypothetical protein TBPG_00393 [Mycobacterium tuberculosis W-148]
 gi|328460000|gb|AEB05423.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
 gi|339332590|emb|CCC28305.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|341603152|emb|CCC65830.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344221059|gb|AEN01690.1| hypothetical protein MTCTRI2_3290 [Mycobacterium tuberculosis 
CTRI-2]
Length=62

 Score =  121 bits (304),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 61/62 (99%), Positives = 62/62 (100%), Gaps = 0/62 (0%)

Query  1   VRRSASTCGWKTPTRRGTSRPSDSKTLILELPDERAVAIVPVPSKLSLKAAGGPRGAQSG  60
           +RRSASTCGWKTPTRRGTSRPSDSKTLILELPDERAVAIVPVPSKLSLKAAGGPRGAQSG
Sbjct  1   MRRSASTCGWKTPTRRGTSRPSDSKTLILELPDERAVAIVPVPSKLSLKAAGGPRGAQSG  60

Query  61  HG  62
           HG
Sbjct  61  HG  62


>gi|148824425|ref|YP_001289179.1| hypothetical protein TBFG_13252 [Mycobacterium tuberculosis F11]
 gi|148722952|gb|ABR07577.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
Length=62

 Score =  119 bits (298),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 60/62 (97%), Positives = 61/62 (99%), Gaps = 0/62 (0%)

Query  1   VRRSASTCGWKTPTRRGTSRPSDSKTLILELPDERAVAIVPVPSKLSLKAAGGPRGAQSG  60
           +RRSASTCGWKTPTRRGTSRPSDSKTL LELPDERAVAIVPVPSKLSLKAAGGPRGAQSG
Sbjct  1   MRRSASTCGWKTPTRRGTSRPSDSKTLSLELPDERAVAIVPVPSKLSLKAAGGPRGAQSG  60

Query  61  HG  62
           HG
Sbjct  61  HG  62


>gi|340628204|ref|YP_004746656.1| hypothetical protein MCAN_32431 [Mycobacterium canettii CIPT 
140010059]
 gi|340006394|emb|CCC45574.1| putative uncharacterized protein [Mycobacterium canettii CIPT 
140010059]
Length=70

 Score = 41.2 bits (95),  Expect = 0.054, Method: Compositional matrix adjust.
 Identities = 19/22 (87%), Positives = 21/22 (96%), Gaps = 0/22 (0%)

Query  1   VRRSASTCGWKTPTRRGTSRPS  22
           ++RSASTCGWKTPTR GTSRPS
Sbjct  1   MQRSASTCGWKTPTRLGTSRPS  22


>gi|254819141|ref|ZP_05224142.1| hypothetical protein MintA_04404 [Mycobacterium intracellulare 
ATCC 13950]
Length=152

 Score = 39.7 bits (91),  Expect = 0.15, Method: Compositional matrix adjust.
 Identities = 21/32 (66%), Positives = 23/32 (72%), Gaps = 0/32 (0%)

Query  25  KTLILELPDERAVAIVPVPSKLSLKAAGGPRG  56
           KTLI+ LP E AVAIVPVP +LSLKA     G
Sbjct  43  KTLIVALPGELAVAIVPVPWRLSLKAVAAALG  74


>gi|5305776|gb|AAD41809.1|AF144091_3 unknown [Mycobacterium smegmatis str. MC2 155]
Length=185

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 21/25 (84%), Gaps = 0/25 (0%)

Query  25  KTLILELPDERAVAIVPVPSKLSLK  49
           KTL++ LP   AVA+VPVP+KLSLK
Sbjct  75  KTLVIALPKGLAVAVVPVPTKLSLK  99


>gi|118470403|ref|YP_886279.1| YbaK/ebsC protein [Mycobacterium smegmatis str. MC2 155]
 gi|118171690|gb|ABK72586.1| YbaK/ebsC protein [Mycobacterium smegmatis str. MC2 155]
Length=163

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 21/25 (84%), Gaps = 0/25 (0%)

Query  25  KTLILELPDERAVAIVPVPSKLSLK  49
           KTL++ LP   AVA+VPVP+KLSLK
Sbjct  53  KTLVIALPKGLAVAVVPVPTKLSLK  77


>gi|326381836|ref|ZP_08203529.1| hypothetical protein SCNU_02782 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326199262|gb|EGD56443.1| hypothetical protein SCNU_02782 [Gordonia neofelifaecis NRRL 
B-59395]
Length=168

 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 19/34 (56%), Positives = 26/34 (77%), Gaps = 1/34 (2%)

Query  25  KTLILELPDER-AVAIVPVPSKLSLKAAGGPRGA  57
           KTL+++L D R  VA++PVP+KLSLK+A    GA
Sbjct  59  KTLVVDLGDGRLGVAVIPVPAKLSLKSAAKALGA  92


>gi|183981355|ref|YP_001849646.1| hypothetical protein MMAR_1332 [Mycobacterium marinum M]
 gi|183174681|gb|ACC39791.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=151

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 17/23 (74%), Positives = 20/23 (87%), Gaps = 0/23 (0%)

Query  25  KTLILELPDERAVAIVPVPSKLS  47
           KTLI+ LP E AVA+VPVPS+LS
Sbjct  43  KTLIIALPGELAVAVVPVPSRLS  65


>gi|15827348|ref|NP_301611.1| hypothetical protein ML0799 [Mycobacterium leprae TN]
 gi|221229826|ref|YP_002503242.1| hypothetical protein MLBr_00799 [Mycobacterium leprae Br4923]
 gi|13092897|emb|CAC30308.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932933|emb|CAR70893.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=135

 Score = 35.8 bits (81),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 17/26 (66%), Positives = 21/26 (81%), Gaps = 0/26 (0%)

Query  24  SKTLILELPDERAVAIVPVPSKLSLK  49
           SKTLI+ LP E A+AI+  PS+LSLK
Sbjct  22  SKTLIIALPRELAIAILSAPSRLSLK  47


>gi|118618029|ref|YP_906361.1| hypothetical protein MUL_2547 [Mycobacterium ulcerans Agy99]
 gi|118570139|gb|ABL04890.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=111

 Score = 35.0 bits (79),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 16/23 (70%), Positives = 20/23 (87%), Gaps = 0/23 (0%)

Query  25  KTLILELPDERAVAIVPVPSKLS  47
           KTL++ LP E AVA+VPVPS+LS
Sbjct  3   KTLVIALPGEFAVAVVPVPSRLS  25


>gi|283458263|ref|YP_003362882.1| hypothetical protein RMDY18_12300 [Rothia mucilaginosa DY-18]
 gi|283134297|dbj|BAI65062.1| uncharacterized conserved protein [Rothia mucilaginosa DY-18]
Length=169

 Score = 34.7 bits (78),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 20/54 (38%), Positives = 30/54 (56%), Gaps = 0/54 (0%)

Query  6   STCGWKTPTRRGTSRPSDSKTLILELPDERAVAIVPVPSKLSLKAAGGPRGAQS  59
           ++ G +   + G S     KTL++    + AVAIVPV  KL++KAA    G +S
Sbjct  42  TSFGEEAAKKLGASEEQVFKTLLIVHEKDFAVAIVPVSGKLNIKAAAAALGWKS  95


>gi|120402776|ref|YP_952605.1| ybaK/ebsC protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955594|gb|ABM12599.1| ybaK/ebsC protein [Mycobacterium vanbaalenii PYR-1]
Length=178

 Score = 33.5 bits (75),  Expect = 9.8, Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 20/25 (80%), Gaps = 0/25 (0%)

Query  25  KTLILELPDERAVAIVPVPSKLSLK  49
           KTL++ LP    VA++PVPSKLSLK
Sbjct  69  KTLVVALPKGLGVAVLPVPSKLSLK  93



Lambda     K      H
   0.312    0.129    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131656912128


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40