BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3224B

Length=72
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|31794405|ref|NP_856898.1|  hypothetical protein Mb3253 [Mycoba...   145    2e-33
gi|294993836|ref|ZP_06799527.1|  hypothetical protein Mtub2_04796...   137    4e-31
gi|254819141|ref|ZP_05224142.1|  hypothetical protein MintA_04404...  82.8    2e-14
gi|183981355|ref|YP_001849646.1|  hypothetical protein MMAR_1332 ...  73.6    1e-11
gi|118618029|ref|YP_906361.1|  hypothetical protein MUL_2547 [Myc...  73.2    1e-11
gi|15827348|ref|NP_301611.1|  hypothetical protein ML0799 [Mycoba...  69.7    1e-10
gi|169630625|ref|YP_001704274.1|  hypothetical protein MAB_3544 [...  68.2    3e-10
gi|145225268|ref|YP_001135946.1|  ybaK/ebsC protein [Mycobacteriu...  67.4    7e-10
gi|315445566|ref|YP_004078445.1|  ybaK/ebsC protein [Mycobacteriu...  66.6    1e-09
gi|296168997|ref|ZP_06850663.1|  YbaK/ebsC protein [Mycobacterium...  66.6    1e-09
gi|325675714|ref|ZP_08155398.1|  YbaK/EbsC family protein EbsC pr...  66.2    1e-09
gi|312140656|ref|YP_004007992.1|  proline-tRNA ligase pros [Rhodo...  66.2    1e-09
gi|118470403|ref|YP_886279.1|  YbaK/ebsC protein [Mycobacterium s...  63.2    1e-08
gi|120402776|ref|YP_952605.1|  ybaK/ebsC protein [Mycobacterium v...  63.2    1e-08
gi|226365810|ref|YP_002783593.1|  aminoacyl-tRNA deacylase [Rhodo...  63.2    1e-08
gi|226305672|ref|YP_002765632.1|  aminoacyl-tRNA deacylase [Rhodo...  62.4    2e-08
gi|229489320|ref|ZP_04383183.1|  YbaK/ebsC protein [Rhodococcus e...  62.0    2e-08
gi|330957757|gb|EGH58017.1|  hypothetical protein PMA4326_04154 [...  61.6    4e-08
gi|342861184|ref|ZP_08717833.1|  ybaK/ebsC protein [Mycobacterium...  61.2    4e-08
gi|111023303|ref|YP_706275.1|  hypothetical protein RHA1_ro06340 ...  61.2    5e-08
gi|289428165|ref|ZP_06429864.1|  YbaK/ebsC protein [Propionibacte...  61.2    5e-08
gi|313794107|gb|EFS42127.1|  YbaK/ebsC protein [Propionibacterium...  61.2    5e-08
gi|296269410|ref|YP_003652042.1|  ybaK/ebsC protein [Thermobispor...  61.2    5e-08
gi|50843695|ref|YP_056922.1|  putative transcriptional regulator ...  61.2    5e-08
gi|54026558|ref|YP_120800.1|  hypothetical protein nfa45850 [Noca...  60.8    6e-08
gi|261867711|ref|YP_003255633.1|  hypothetical protein D11S_1027 ...  60.8    6e-08
gi|222147124|ref|YP_002548081.1|  hypothetical protein Avi_0136 [...  60.8    6e-08
gi|294650327|ref|ZP_06727694.1|  YbaK/ebsC family protein [Acinet...  60.8    6e-08
gi|5305776|gb|AAD41809.1|AF144091_3  unknown [Mycobacterium smegm...  60.8    7e-08
gi|226954069|ref|ZP_03824533.1|  YbaK-like protein [Acinetobacter...  60.8    7e-08
gi|167035328|ref|YP_001670559.1|  ybaK/ebsC protein [Pseudomonas ...  60.8    7e-08
gi|126434014|ref|YP_001069705.1|  ybaK/ebsC protein [Mycobacteriu...  60.5    7e-08
gi|293392118|ref|ZP_06636452.1|  tRNA pseudouridine synthase C [A...  60.5    8e-08
gi|326381836|ref|ZP_08203529.1|  hypothetical protein SCNU_02782 ...  60.5    8e-08
gi|340795771|ref|YP_004761234.1|  hypothetical protein CVAR_2822 ...  60.5    8e-08
gi|340795817|ref|YP_004761280.1|  hypothetical protein CVAR_2866 ...  60.1    9e-08
gi|299770341|ref|YP_003732367.1|  hypothetical protein AOLE_10525...  60.1    9e-08
gi|325275184|ref|ZP_08141151.1|  ybaK/ebsC protein [Pseudomonas s...  60.1    1e-07
gi|70732191|ref|YP_261947.1|  ybaK/ebsC protein [Pseudomonas fluo...  60.1    1e-07
gi|26987813|ref|NP_743238.1|  ybaK/ebsC protein [Pseudomonas puti...  60.1    1e-07
gi|170720292|ref|YP_001747980.1|  ybaK/ebsC protein [Pseudomonas ...  59.7    1e-07
gi|84496427|ref|ZP_00995281.1|  putative transcriptional regulato...  59.3    2e-07
gi|262372649|ref|ZP_06065928.1|  conserved hypothetical protein [...  59.3    2e-07
gi|239987025|ref|ZP_04707689.1|  hypothetical protein SrosN1_0693...  59.3    2e-07
gi|262278974|ref|ZP_06056759.1|  conserved hypothetical protein [...  59.3    2e-07
gi|269794415|ref|YP_003313870.1|  ybaK/ebsC protein [Sanguibacter...  59.3    2e-07
gi|325122077|gb|ADY81600.1|  putative transcription regulator [Ac...  59.3    2e-07
gi|108798349|ref|YP_638546.1|  hypothetical protein Mmcs_1378 [My...  58.9    2e-07
gi|339489069|ref|YP_004703597.1|  YbaK/EbsC protein [Pseudomonas ...  58.9    2e-07
gi|326793332|ref|YP_004311152.1|  ybaK/ebsC protein [Marinomonas ...  58.9    2e-07


>gi|31794405|ref|NP_856898.1| hypothetical protein Mb3253 [Mycobacterium bovis AF2122/97]
 gi|57117077|ref|YP_177947.1| hypothetical protein Rv3224B [Mycobacterium tuberculosis H37Rv]
 gi|121639114|ref|YP_979338.1| hypothetical protein BCG_3254 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 54 more sequence titles
 Length=72

 Score =  145 bits (367),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 71/72 (99%), Positives = 72/72 (100%), Gaps = 0/72 (0%)

Query  1   VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVLRCRQTALGRHGGP  60
           +PKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVLRCRQTALGRHGGP
Sbjct  1   MPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVLRCRQTALGRHGGP  60

Query  61  AGPDHLDQRDHR  72
           AGPDHLDQRDHR
Sbjct  61  AGPDHLDQRDHR  72


>gi|294993836|ref|ZP_06799527.1| hypothetical protein Mtub2_04796 [Mycobacterium tuberculosis 
210]
Length=67

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  6   MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVLRCRQTALGRHGGPAGPDH  65
           MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVLRCRQTALGRHGGPAGPDH
Sbjct  1   MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVLRCRQTALGRHGGPAGPDH  60

Query  66  LDQRDHR  72
           LDQRDHR
Sbjct  61  LDQRDHR  67


>gi|254819141|ref|ZP_05224142.1| hypothetical protein MintA_04404 [Mycobacterium intracellulare 
ATCC 13950]
Length=152

 Score = 82.8 bits (203),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 40/47 (86%), Positives = 44/47 (94%), Gaps = 0/47 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            VPKA MA+PAAAE+ATGYVVGGISPFGQRKRLRTV+D SAL WDR+L
Sbjct  75   VPKAVMAEPAAAERATGYVVGGISPFGQRKRLRTVLDGSALRWDRIL  121


>gi|183981355|ref|YP_001849646.1| hypothetical protein MMAR_1332 [Mycobacterium marinum M]
 gi|183174681|gb|ACC39791.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=151

 Score = 73.6 bits (179),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 34/42 (81%), Positives = 39/42 (93%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA+PA AE+ TGYVVGGISPFGQR++LRTVVD SAL+WDRVL
Sbjct  80   MAQPADAERTTGYVVGGISPFGQRRKLRTVVDSSALTWDRVL  121


>gi|118618029|ref|YP_906361.1| hypothetical protein MUL_2547 [Mycobacterium ulcerans Agy99]
 gi|118570139|gb|ABL04890.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
Length=111

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 34/42 (81%), Positives = 39/42 (93%), Gaps = 0/42 (0%)

Query  6   MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
           MA+PA AE+ TGYVVGGISPFGQR++LRTVVD SAL+WDRVL
Sbjct  40  MAEPADAERTTGYVVGGISPFGQRRKLRTVVDSSALTWDRVL  81


>gi|15827348|ref|NP_301611.1| hypothetical protein ML0799 [Mycobacterium leprae TN]
 gi|221229826|ref|YP_002503242.1| hypothetical protein MLBr_00799 [Mycobacterium leprae Br4923]
 gi|13092897|emb|CAC30308.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932933|emb|CAR70893.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=135

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 35/47 (75%), Positives = 39/47 (83%), Gaps = 0/47 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            V KA  A+PAAA++AT YVVGG+ P GQ KRLRTVVD SALSWDRVL
Sbjct  55   VTKANTAEPAAAQRATSYVVGGVFPSGQWKRLRTVVDTSALSWDRVL  101


>gi|169630625|ref|YP_001704274.1| hypothetical protein MAB_3544 [Mycobacterium abscessus ATCC 19977]
 gi|169242592|emb|CAM63620.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=168

 Score = 68.2 bits (165),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 30/42 (72%), Positives = 38/42 (91%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA PAAAE+++GYVVGGISP GQRK+L TV+D SAL+W+R+L
Sbjct  96   MADPAAAERSSGYVVGGISPLGQRKQLPTVIDASALTWERIL  137


>gi|145225268|ref|YP_001135946.1| ybaK/ebsC protein [Mycobacterium gilvum PYR-GCK]
 gi|145217754|gb|ABP47158.1| ybaK/ebsC protein [Mycobacterium gilvum PYR-GCK]
Length=193

 Score = 67.4 bits (163),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 31/42 (74%), Positives = 37/42 (89%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA PAAA++++GYVVGGISP GQRK L TVVD SAL+WDR+L
Sbjct  121  MADPAAAQRSSGYVVGGISPLGQRKALPTVVDASALNWDRIL  162


>gi|315445566|ref|YP_004078445.1| ybaK/ebsC protein [Mycobacterium sp. Spyr1]
 gi|315263869|gb|ADU00611.1| ybaK/ebsC protein [Mycobacterium sp. Spyr1]
Length=163

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 31/42 (74%), Positives = 37/42 (89%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA PAAA++++GYVVGGISP GQRK L TVVD SAL+WDR+L
Sbjct  91   MADPAAAQRSSGYVVGGISPLGQRKALPTVVDASALNWDRIL  132


>gi|296168997|ref|ZP_06850663.1| YbaK/ebsC protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896339|gb|EFG75995.1| YbaK/ebsC protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=161

 Score = 66.6 bits (161),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 31/42 (74%), Positives = 37/42 (89%), Gaps = 0/42 (0%)

Query  5    AMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            +MA+PAAAE+ATGYV+G +SPFGQRK L TVVD  AL+WDRV
Sbjct  89   SMAEPAAAERATGYVLGAVSPFGQRKALPTVVDADALAWDRV  130


>gi|325675714|ref|ZP_08155398.1| YbaK/EbsC family protein EbsC protein [Rhodococcus equi ATCC 
33707]
 gi|325553685|gb|EGD23363.1| YbaK/EbsC family protein EbsC protein [Rhodococcus equi ATCC 
33707]
Length=164

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 31/42 (74%), Positives = 37/42 (89%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA+ + AE++TGYV+GGISP GQRKRL TVVD SAL+WDRVL
Sbjct  92   MAEQSDAERSTGYVLGGISPLGQRKRLPTVVDASALTWDRVL  133


>gi|312140656|ref|YP_004007992.1| proline-tRNA ligase pros [Rhodococcus equi 103S]
 gi|311889995|emb|CBH49313.1| putative proline-tRNA ligase ProS [Rhodococcus equi 103S]
Length=164

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 31/42 (74%), Positives = 37/42 (89%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA+ + AE++TGYV+GGISP GQRKRL TVVD SAL+WDRVL
Sbjct  92   MAEQSDAERSTGYVLGGISPLGQRKRLPTVVDASALTWDRVL  133


>gi|118470403|ref|YP_886279.1| YbaK/ebsC protein [Mycobacterium smegmatis str. MC2 155]
 gi|118171690|gb|ABK72586.1| YbaK/ebsC protein [Mycobacterium smegmatis str. MC2 155]
Length=163

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 30/42 (72%), Positives = 36/42 (86%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA PAAA+++TGYVVGGISP GQRK L TV+D SAL +D+VL
Sbjct  90   MADPAAAQRSTGYVVGGISPLGQRKPLPTVIDASALRFDKVL  131


>gi|120402776|ref|YP_952605.1| ybaK/ebsC protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955594|gb|ABM12599.1| ybaK/ebsC protein [Mycobacterium vanbaalenii PYR-1]
Length=178

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 30/42 (72%), Positives = 35/42 (84%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA PA A++++GYVVGGISP GQRK L TVVD SA+ WDRVL
Sbjct  106  MADPADAQRSSGYVVGGISPLGQRKALPTVVDSSAMQWDRVL  147


>gi|226365810|ref|YP_002783593.1| aminoacyl-tRNA deacylase [Rhodococcus opacus B4]
 gi|226244300|dbj|BAH54648.1| putative aminoacyl-tRNA deacylase [Rhodococcus opacus B4]
Length=164

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 31/42 (74%), Positives = 33/42 (79%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA    AE++TGYV GGISP GQRK L TVVDVSAL WDRVL
Sbjct  92   MADRTEAERSTGYVFGGISPLGQRKALPTVVDVSALDWDRVL  133


>gi|226305672|ref|YP_002765632.1| aminoacyl-tRNA deacylase [Rhodococcus erythropolis PR4]
 gi|226184789|dbj|BAH32893.1| probable aminoacyl-tRNA deacylase [Rhodococcus erythropolis PR4]
Length=164

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 28/42 (67%), Positives = 34/42 (81%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA  A AE+++GYV GGISP GQRK+L TV+D SAL WDR+L
Sbjct  92   MADRAEAERSSGYVFGGISPLGQRKKLPTVIDASALDWDRIL  133


>gi|229489320|ref|ZP_04383183.1| YbaK/ebsC protein [Rhodococcus erythropolis SK121]
 gi|229323417|gb|EEN89175.1| YbaK/ebsC protein [Rhodococcus erythropolis SK121]
Length=167

 Score = 62.0 bits (149),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 28/42 (67%), Positives = 34/42 (81%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA  A AE+++GYV GGISP GQRK+L TV+D SAL WDR+L
Sbjct  95   MADRAEAERSSGYVFGGISPLGQRKKLPTVIDASALDWDRIL  136


>gi|330957757|gb|EGH58017.1| hypothetical protein PMA4326_04154 [Pseudomonas syringae pv. 
maculicola str. ES4326]
Length=156

 Score = 61.6 bits (148),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 27/44 (62%), Positives = 37/44 (85%), Gaps = 0/44 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            KA MA PAAA++ATGY++GGISP GQ+KRLRT +D SA +++ +
Sbjct  81   KAEMADPAAAQRATGYLLGGISPLGQKKRLRTFIDESAQNFESI  124


>gi|342861184|ref|ZP_08717833.1| ybaK/ebsC protein [Mycobacterium colombiense CECT 3035]
 gi|342131628|gb|EGT84898.1| ybaK/ebsC protein [Mycobacterium colombiense CECT 3035]
Length=161

 Score = 61.2 bits (147),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 28/43 (66%), Positives = 35/43 (82%), Gaps = 0/43 (0%)

Query  5    AMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            +MA  A AE+ATGYV+G +SPFGQRK+L TVVD  AL+W+RV 
Sbjct  88   SMADAAVAERATGYVLGAVSPFGQRKKLPTVVDSGALAWERVF  130


>gi|111023303|ref|YP_706275.1| hypothetical protein RHA1_ro06340 [Rhodococcus jostii RHA1]
 gi|110822833|gb|ABG98117.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=164

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 30/42 (72%), Positives = 32/42 (77%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA    AE++TGYV GGISP GQRK L TVVD SAL WDRVL
Sbjct  92   MADRTEAERSTGYVFGGISPLGQRKALPTVVDASALDWDRVL  133


>gi|289428165|ref|ZP_06429864.1| YbaK/ebsC protein [Propionibacterium acnes J165]
 gi|289158645|gb|EFD06849.1| YbaK/ebsC protein [Propionibacterium acnes J165]
 gi|313808562|gb|EFS47022.1| YbaK/ebsC protein [Propionibacterium acnes HL087PA2]
 16 more sequence titles
 Length=162

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 30/45 (67%), Positives = 34/45 (76%), Gaps = 0/45 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            K AMA PAAAE+ATGY+VGGISP GQ+KRL   +D S L   RVL
Sbjct  88   KVAMADPAAAERATGYIVGGISPLGQKKRLPICIDESVLGQPRVL  132


>gi|313794107|gb|EFS42127.1| YbaK/ebsC protein [Propionibacterium acnes HL110PA1]
 gi|313803228|gb|EFS44424.1| YbaK/ebsC protein [Propionibacterium acnes HL110PA2]
 gi|313839238|gb|EFS76952.1| YbaK/ebsC protein [Propionibacterium acnes HL086PA1]
 gi|314964003|gb|EFT08103.1| YbaK/ebsC protein [Propionibacterium acnes HL082PA1]
 gi|315078359|gb|EFT50396.1| YbaK/ebsC protein [Propionibacterium acnes HL053PA2]
 gi|315081444|gb|EFT53420.1| YbaK/ebsC protein [Propionibacterium acnes HL078PA1]
 gi|327334440|gb|EGE76151.1| YbaK/ebsC protein [Propionibacterium acnes HL097PA1]
 gi|327457540|gb|EGF04195.1| YbaK/ebsC protein [Propionibacterium acnes HL092PA1]
Length=162

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 30/45 (67%), Positives = 34/45 (76%), Gaps = 0/45 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            K AMA PAAAE+ATGY+VGGISP GQ+KRL   +D S L   RVL
Sbjct  88   KVAMADPAAAERATGYIVGGISPLGQKKRLPICIDESVLGQPRVL  132


>gi|296269410|ref|YP_003652042.1| ybaK/ebsC protein [Thermobispora bispora DSM 43833]
 gi|296092197|gb|ADG88149.1| ybaK/ebsC protein [Thermobispora bispora DSM 43833]
Length=164

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 29/44 (66%), Positives = 35/44 (80%), Gaps = 0/44 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            +AA+A PA  E+ TGYVVGGISP GQRKRL TVVD SAL ++ +
Sbjct  88   RAALADPAEVERVTGYVVGGISPLGQRKRLPTVVDESALDFETI  131


>gi|50843695|ref|YP_056922.1| putative transcriptional regulator [Propionibacterium acnes KPA171202]
 gi|282854543|ref|ZP_06263879.1| YbaK/ebsC protein [Propionibacterium acnes J139]
 gi|289425883|ref|ZP_06427635.1| YbaK/ebsC protein [Propionibacterium acnes SK187]
 51 more sequence titles
 Length=162

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 30/45 (67%), Positives = 34/45 (76%), Gaps = 0/45 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            K AMA PAAAE+ATGY+VGGISP GQ+KRL   +D S L   RVL
Sbjct  88   KVAMADPAAAERATGYIVGGISPLGQKKRLPICIDESVLGQPRVL  132


>gi|54026558|ref|YP_120800.1| hypothetical protein nfa45850 [Nocardia farcinica IFM 10152]
 gi|54018066|dbj|BAD59436.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=163

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 30/43 (70%), Positives = 34/43 (80%), Gaps = 0/43 (0%)

Query  5    AMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            +MA  A AE+ TGYV+GGISP GQRK L TV+D SAL WDRVL
Sbjct  91   SMADRAKAERGTGYVLGGISPLGQRKALPTVIDESALRWDRVL  133


>gi|261867711|ref|YP_003255633.1| hypothetical protein D11S_1027 [Aggregatibacter actinomycetemcomitans 
D11S-1]
 gi|261413043|gb|ACX82414.1| hypothetical protein D11S_1027 [Aggregatibacter actinomycetemcomitans 
D11S-1]
Length=159

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 26/47 (56%), Positives = 37/47 (79%), Gaps = 0/47 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            V K  MA   AA+++TGY+VGGISP GQ+KRL TV++ SAL++D++ 
Sbjct  81   VKKVEMADKDAAQKSTGYLVGGISPLGQKKRLTTVIEQSALNFDKIF  127


>gi|222147124|ref|YP_002548081.1| hypothetical protein Avi_0136 [Agrobacterium vitis S4]
 gi|221734114|gb|ACM35077.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length=157

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 28/43 (66%), Positives = 36/43 (84%), Gaps = 0/43 (0%)

Query  4    AAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            AAM KPAAAE+ TG+VVGGISPFGQ+K + TV+++SAL+   V
Sbjct  84   AAMMKPAAAEKLTGFVVGGISPFGQKKSVPTVIELSALNESHV  126


>gi|294650327|ref|ZP_06727694.1| YbaK/ebsC family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292823740|gb|EFF82576.1| YbaK/ebsC family protein [Acinetobacter haemolyticus ATCC 19194]
Length=155

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 26/44 (60%), Positives = 35/44 (80%), Gaps = 0/44 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            K  MA P  AE+ TGY+VGGISP GQ+KRL+TV+D SA ++D++
Sbjct  80   KLQMANPKDAERLTGYLVGGISPLGQKKRLKTVIDKSAQAFDKI  123


>gi|5305776|gb|AAD41809.1|AF144091_3 unknown [Mycobacterium smegmatis str. MC2 155]
Length=185

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 30/42 (72%), Positives = 35/42 (84%), Gaps = 0/42 (0%)

Query  6    MAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            MA PAAA+++TGYVV GISP GQRK L TV+D SAL +DRVL
Sbjct  112  MADPAAAQRSTGYVVRGISPLGQRKPLPTVIDASALRFDRVL  153


>gi|226954069|ref|ZP_03824533.1| YbaK-like protein [Acinetobacter sp. ATCC 27244]
 gi|226835194|gb|EEH67577.1| YbaK-like protein [Acinetobacter sp. ATCC 27244]
Length=155

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 26/44 (60%), Positives = 35/44 (80%), Gaps = 0/44 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            K  MA P  AE+ TGY+VGGISP GQ+KRL+TV+D SA ++D++
Sbjct  80   KLQMANPKDAERLTGYLVGGISPLGQKKRLKTVIDKSAQAFDKI  123


>gi|167035328|ref|YP_001670559.1| ybaK/ebsC protein [Pseudomonas putida GB-1]
 gi|166861816|gb|ABZ00224.1| ybaK/ebsC protein [Pseudomonas putida GB-1]
Length=156

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 28/46 (61%), Positives = 36/46 (79%), Gaps = 0/46 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            V K  MA PAAA++ATGY+VGGISP GQ+KRLRT +D SA ++  +
Sbjct  79   VKKCEMADPAAAQRATGYLVGGISPLGQKKRLRTFIDESAQNFATI  124


>gi|126434014|ref|YP_001069705.1| ybaK/ebsC protein [Mycobacterium sp. JLS]
 gi|126233814|gb|ABN97214.1| ybaK/ebsC protein [Mycobacterium sp. JLS]
Length=172

 Score = 60.5 bits (145),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 37/47 (79%), Positives = 42/47 (90%), Gaps = 0/47 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            VPKAAMA+ AAAE++TGYV+GGISP GQRKRL TV+D SAL WDRVL
Sbjct  95   VPKAAMAERAAAERSTGYVLGGISPLGQRKRLPTVIDSSALQWDRVL  141


>gi|293392118|ref|ZP_06636452.1| tRNA pseudouridine synthase C [Aggregatibacter actinomycetemcomitans 
D7S-1]
 gi|290952652|gb|EFE02771.1| tRNA pseudouridine synthase C [Aggregatibacter actinomycetemcomitans 
D7S-1]
Length=159

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 26/47 (56%), Positives = 37/47 (79%), Gaps = 0/47 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            V K  MA   AA+++TGY+VGGISP GQ+KRL TV++ SAL++D++ 
Sbjct  81   VKKVEMADKDAAQKSTGYLVGGISPLGQKKRLATVIEQSALNFDKIF  127


>gi|326381836|ref|ZP_08203529.1| hypothetical protein SCNU_02782 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326199262|gb|EGD56443.1| hypothetical protein SCNU_02782 [Gordonia neofelifaecis NRRL 
B-59395]
Length=168

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 29/45 (65%), Positives = 34/45 (76%), Gaps = 0/45 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            KA MA+ A   +ATGYV+GG+SP GQ+  L TVVDVSAL WD VL
Sbjct  94   KAEMAQAAKVTRATGYVLGGVSPLGQKTVLPTVVDVSALEWDSVL  138


>gi|340795771|ref|YP_004761234.1| hypothetical protein CVAR_2822 [Corynebacterium variabile DSM 
44702]
 gi|340535681|gb|AEK38161.1| hypothetical protein CVAR_2822 [Corynebacterium variabile DSM 
44702]
Length=175

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 29/45 (65%), Positives = 35/45 (78%), Gaps = 0/45 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            KA MA P AAE++TGYVVGGISP GQ+KRL TV+D  A S + +L
Sbjct  96   KATMADPKAAERSTGYVVGGISPLGQKKRLATVLDAEAASEETLL  140


>gi|340795817|ref|YP_004761280.1| hypothetical protein CVAR_2866 [Corynebacterium variabile DSM 
44702]
 gi|340535727|gb|AEK38207.1| hypothetical protein CVAR_2866 [Corynebacterium variabile DSM 
44702]
Length=175

 Score = 60.1 bits (144),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 29/45 (65%), Positives = 35/45 (78%), Gaps = 0/45 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            KA MA P AAE++TGYVVGGISP GQ+KRL TV+D  A S + +L
Sbjct  96   KATMADPKAAERSTGYVVGGISPLGQKKRLATVLDAEAASEETLL  140


>gi|299770341|ref|YP_003732367.1| hypothetical protein AOLE_10525 [Acinetobacter sp. DR1]
 gi|298700429|gb|ADI90994.1| hypothetical protein AOLE_10525 [Acinetobacter sp. DR1]
Length=155

 Score = 60.1 bits (144),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 25/44 (57%), Positives = 35/44 (80%), Gaps = 0/44 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            K  MA P  AE+ TGY+VGGISP GQ+KRL+TV+D SA +++++
Sbjct  80   KLQMANPKDAERLTGYLVGGISPLGQKKRLKTVIDASAQNFNKI  123


>gi|325275184|ref|ZP_08141151.1| ybaK/ebsC protein [Pseudomonas sp. TJI-51]
 gi|324099671|gb|EGB97550.1| ybaK/ebsC protein [Pseudomonas sp. TJI-51]
Length=156

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 28/46 (61%), Positives = 36/46 (79%), Gaps = 0/46 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            V K  MA PAAA++ATGY+VGGISP GQ+KRLRT +D SA ++  +
Sbjct  79   VKKCEMADPAAAQRATGYLVGGISPLGQKKRLRTFIDDSAQNFATI  124


>gi|70732191|ref|YP_261947.1| ybaK/ebsC protein [Pseudomonas fluorescens Pf-5]
 gi|68346490|gb|AAY94096.1| Cys-tRNA[Pro] and Cys-tRNA[Cys] deacylase YbaK [Pseudomonas fluorescens 
Pf-5]
Length=156

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 28/47 (60%), Positives = 36/47 (77%), Gaps = 0/47 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            V KA MA PAAA++ATGY++GGISP GQ+KRLRT +D SA  +  + 
Sbjct  79   VKKAEMADPAAAQRATGYLLGGISPLGQKKRLRTFIDNSAQPFASIF  125


>gi|26987813|ref|NP_743238.1| ybaK/ebsC protein [Pseudomonas putida KT2440]
 gi|148546361|ref|YP_001266463.1| ybaK/ebsC protein [Pseudomonas putida F1]
 gi|24982511|gb|AAN66702.1|AE016298_6 conserved hypothetical protein TIGR00011 [Pseudomonas putida 
KT2440]
 gi|148510419|gb|ABQ77279.1| ybaK/ebsC protein [Pseudomonas putida F1]
 gi|313497443|gb|ADR58809.1| YbaK/ebsC protein [Pseudomonas putida BIRD-1]
Length=156

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 28/46 (61%), Positives = 36/46 (79%), Gaps = 0/46 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            V K  MA PAAA++ATGY+VGGISP GQ+KRLRT +D SA ++  +
Sbjct  79   VKKCEMADPAAAQRATGYLVGGISPLGQKKRLRTFIDDSAQNFATI  124


>gi|170720292|ref|YP_001747980.1| ybaK/ebsC protein [Pseudomonas putida W619]
 gi|169758295|gb|ACA71611.1| ybaK/ebsC protein [Pseudomonas putida W619]
Length=156

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 28/46 (61%), Positives = 36/46 (79%), Gaps = 0/46 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            V K  MA PAAA++ATGY+VGGISP GQ+KRLRT +D SA ++  +
Sbjct  79   VKKCEMADPAAAQRATGYLVGGISPLGQKKRLRTFIDDSARNFATI  124


>gi|84496427|ref|ZP_00995281.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
 gi|84383195|gb|EAP99076.1| putative transcriptional regulator [Janibacter sp. HTCC2649]
Length=164

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 30/47 (64%), Positives = 37/47 (79%), Gaps = 0/47 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            V K AMA PAAAE+++GYVVGGISP GQ++ L+TVVD SA   + VL
Sbjct  88   VKKVAMADPAAAERSSGYVVGGISPIGQKRALQTVVDSSAHEHETVL  134


>gi|262372649|ref|ZP_06065928.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262312674|gb|EEY93759.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length=155

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 24/44 (55%), Positives = 35/44 (80%), Gaps = 0/44 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            K  MA P  AE+ TGY+VGGISP GQ+KRL+TV+D +A +++++
Sbjct  80   KLQMANPKDAERLTGYLVGGISPLGQKKRLKTVIDATAQTFNKI  123


>gi|239987025|ref|ZP_04707689.1| hypothetical protein SrosN1_06937 [Streptomyces roseosporus NRRL 
11379]
 gi|291443973|ref|ZP_06583363.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
 gi|291346920|gb|EFE73824.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
Length=173

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 29/38 (77%), Positives = 32/38 (85%), Gaps = 0/38 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSA  40
            +A MA PAAAE+ TGYV GGISP GQRKRLRTV+D SA
Sbjct  91   RATMADPAAAERTTGYVRGGISPLGQRKRLRTVLDASA  128


>gi|262278974|ref|ZP_06056759.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202]
 gi|262259325|gb|EEY78058.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202]
Length=155

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 25/44 (57%), Positives = 34/44 (78%), Gaps = 0/44 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            K  MA P  AE+ TGY+VGGISP GQ+KRL+TV+D SA ++ ++
Sbjct  80   KLQMANPKDAERLTGYLVGGISPLGQKKRLKTVIDASAQNFSKI  123


>gi|269794415|ref|YP_003313870.1| ybaK/ebsC protein [Sanguibacter keddieii DSM 10542]
 gi|269096600|gb|ACZ21036.1| ybaK/ebsC protein [Sanguibacter keddieii DSM 10542]
Length=170

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 31/44 (71%), Positives = 34/44 (78%), Gaps = 0/44 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            KA MA+ AAAE+ATGYVVGGISP GQR    TVVD SAL+ D V
Sbjct  95   KATMAEKAAAERATGYVVGGISPLGQRSPHTTVVDSSALTHDTV  138


>gi|325122077|gb|ADY81600.1| putative transcription regulator [Acinetobacter calcoaceticus 
PHEA-2]
Length=155

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 25/44 (57%), Positives = 33/44 (75%), Gaps = 0/44 (0%)

Query  3    KAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            K  MA P  AE+ TGY+VGGISP GQ+KRL+TV+D SA  + ++
Sbjct  80   KLQMANPKDAERLTGYLVGGISPLGQKKRLKTVIDTSAQEFSKI  123


>gi|108798349|ref|YP_638546.1| hypothetical protein Mmcs_1378 [Mycobacterium sp. MCS]
 gi|119867446|ref|YP_937398.1| ybaK/ebsC protein [Mycobacterium sp. KMS]
 gi|108768768|gb|ABG07490.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119693535|gb|ABL90608.1| ybaK/ebsC protein [Mycobacterium sp. KMS]
Length=171

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/47 (77%), Positives = 42/47 (90%), Gaps = 0/47 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRVL  47
            VPKAAMA+ AAAE++TGYV+GGISP GQR+RL TV+D SAL WDRVL
Sbjct  94   VPKAAMAERAAAERSTGYVLGGISPLGQRRRLPTVIDSSALQWDRVL  140


>gi|339489069|ref|YP_004703597.1| YbaK/EbsC protein [Pseudomonas putida S16]
 gi|338839912|gb|AEJ14717.1| YbaK/EbsC protein [Pseudomonas putida S16]
Length=156

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 27/46 (59%), Positives = 36/46 (79%), Gaps = 0/46 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            V K  MA PA+A++ATGY+VGGISP GQ+KRLRT +D SA ++  +
Sbjct  79   VKKCEMADPASAQRATGYLVGGISPLGQKKRLRTFIDDSAQNFATI  124


>gi|326793332|ref|YP_004311152.1| ybaK/ebsC protein [Marinomonas mediterranea MMB-1]
 gi|326544096|gb|ADZ89316.1| ybaK/ebsC protein [Marinomonas mediterranea MMB-1]
Length=156

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 26/46 (57%), Positives = 35/46 (77%), Gaps = 0/46 (0%)

Query  1    VPKAAMAKPAAAEQATGYVVGGISPFGQRKRLRTVVDVSALSWDRV  46
            V K  MA+P  AE+ TGY+VGGISP GQ+K L T++D SAL +D++
Sbjct  78   VKKLRMAEPKEAERLTGYLVGGISPLGQKKALGTLIDQSALEYDKI  123



Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127392703088


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40