BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3235 Length=213 Score E Sequences producing significant alignments: (Bits) Value gi|15610371|ref|NP_217752.1| hypothetical protein Rv3235 [Mycoba... 424 6e-117 gi|340628214|ref|YP_004746666.1| hypothetical protein MCAN_32531... 422 2e-116 gi|289575955|ref|ZP_06456182.1| conserved hypothetical protein [... 422 2e-116 gi|289555513|ref|ZP_06444723.1| hypothetical alanine, arginine a... 421 4e-116 gi|308232387|ref|ZP_07415901.2| hypothetical alanine, arginine a... 362 2e-98 gi|308373678|ref|ZP_07433298.2| hypothetical alanine, arginine a... 197 1e-48 gi|118462376|ref|YP_883342.1| hypothetical protein MAV_4197 [Myc... 182 4e-44 gi|41409446|ref|NP_962282.1| hypothetical protein MAP3348 [Mycob... 181 4e-44 gi|183981332|ref|YP_001849623.1| hypothetical protein MMAR_1310 ... 173 2e-41 gi|254822984|ref|ZP_05227985.1| hypothetical protein MintA_23854... 171 9e-41 gi|342861435|ref|ZP_08718082.1| hypothetical protein MCOL_21221 ... 164 1e-38 gi|240170362|ref|ZP_04749021.1| hypothetical protein MkanA1_1370... 143 2e-32 gi|296168975|ref|ZP_06850642.1| conserved hypothetical protein [... 134 8e-30 gi|254776634|ref|ZP_05218150.1| hypothetical protein MaviaA2_184... 117 9e-25 gi|145225282|ref|YP_001135960.1| hypothetical protein Mflv_4704 ... 111 6e-23 gi|120402762|ref|YP_952591.1| hypothetical protein Mvan_1763 [My... 99.8 3e-19 gi|118469426|ref|YP_886247.1| hypothetical protein MSMEG_1880 [M... 99.0 4e-19 gi|333991610|ref|YP_004524224.1| hypothetical protein JDM601_297... 90.1 2e-16 gi|169630633|ref|YP_001704282.1| hypothetical protein MAB_3552 [... 87.0 2e-15 gi|325675701|ref|ZP_08155385.1| hypothetical protein HMPREF0724_... 83.6 2e-14 gi|108798325|ref|YP_638522.1| hypothetical protein Mmcs_1354 [My... 82.4 3e-14 gi|111023293|ref|YP_706265.1| hypothetical protein RHA1_ro06330 ... 80.1 2e-13 gi|226365800|ref|YP_002783583.1| hypothetical protein ROP_63910 ... 77.8 9e-13 gi|312140669|ref|YP_004008005.1| hypothetical protein REQ_33300 ... 73.9 1e-11 gi|126433990|ref|YP_001069681.1| hypothetical protein Mjls_1388 ... 73.6 2e-11 gi|289571461|ref|ZP_06451688.1| hypothetical alanine, arginine a... 61.2 8e-08 gi|226305661|ref|YP_002765621.1| hypothetical protein RER_21740 ... 59.7 2e-07 gi|54023108|ref|YP_117350.1| hypothetical protein nfa11410 [Noca... 58.5 6e-07 gi|343927665|ref|ZP_08767133.1| hypothetical protein GOALK_097_0... 54.3 1e-05 gi|296138811|ref|YP_003646054.1| hypothetical protein Tpau_1083 ... 49.7 3e-04 gi|262203499|ref|YP_003274707.1| hypothetical protein Gbro_3626 ... 49.7 3e-04 gi|326383269|ref|ZP_08204957.1| hypothetical protein SCNU_10044 ... 48.1 7e-04 gi|312199834|ref|YP_004019895.1| hypothetical protein FraEuI1c_6... 48.1 8e-04 gi|258651605|ref|YP_003200761.1| hypothetical protein Namu_1370 ... 41.6 0.077 gi|71276685|ref|ZP_00652955.1| conserved hypothetical protein [X... 39.7 0.32 gi|281212429|gb|EFA86589.1| hypothetical protein PPL_00390 [Poly... 39.7 0.32 gi|170730518|ref|YP_001775951.1| hypothetical protein Xfasm12_13... 38.5 0.72 gi|324507261|gb|ADY43082.1| Protein MCM10 [Ascaris suum] 38.1 0.91 gi|342888768|gb|EGU87987.1| hypothetical protein FOXB_01470 [Fus... 37.4 1.3 gi|294629673|ref|ZP_06708233.1| conserved hypothetical protein [... 36.6 2.4 gi|239814046|ref|YP_002942956.1| aldose 1-epimerase [Variovorax ... 36.2 3.3 gi|152967749|ref|YP_001363533.1| hypothetical protein Krad_3806 ... 35.8 4.1 gi|302530012|ref|ZP_07282354.1| predicted protein [Streptomyces ... 35.8 4.2 gi|288919637|ref|ZP_06413965.1| conserved hypothetical protein [... 35.4 4.9 gi|171692977|ref|XP_001911413.1| hypothetical protein [Podospora... 34.7 8.4 gi|158317581|ref|YP_001510089.1| hypothetical protein Franean1_5... 34.7 8.9 >gi|15610371|ref|NP_217752.1| hypothetical protein Rv3235 [Mycobacterium tuberculosis H37Rv] gi|15842824|ref|NP_337861.1| hypothetical protein MT3332 [Mycobacterium tuberculosis CDC1551] gi|31794415|ref|NP_856908.1| hypothetical protein Mb3263 [Mycobacterium bovis AF2122/97] 47 more sequence titles Length=213 Score = 424 bits (1089), Expect = 6e-117, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%), Gaps = 0/213 (0%) Query 1 MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP 60 MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP Sbjct 1 MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP 60 Query 61 PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI 120 PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI Sbjct 61 PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI 120 Query 121 DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT 180 DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT Sbjct 121 DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT 180 Query 181 YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG Sbjct 181 YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 >gi|340628214|ref|YP_004746666.1| hypothetical protein MCAN_32531 [Mycobacterium canettii CIPT 140010059] gi|340006404|emb|CCC45584.1| hypothetical alanine arginine proline rich protein [Mycobacterium canettii CIPT 140010059] Length=213 Score = 422 bits (1084), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 212/213 (99%), Positives = 213/213 (100%), Gaps = 0/213 (0%) Query 1 MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP 60 MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP Sbjct 1 MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP 60 Query 61 PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI 120 PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI Sbjct 61 PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI 120 Query 121 DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT 180 DRRRPVGQLRPLLAPGLVDSVLAVSRTAAG+QQGAAMLRRIRLTPAGPDTADTAAEVFGT Sbjct 121 DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGYQQGAAMLRRIRLTPAGPDTADTAAEVFGT 180 Query 181 YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG Sbjct 181 YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 >gi|289575955|ref|ZP_06456182.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289540386|gb|EFD44964.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length=213 Score = 422 bits (1084), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 212/213 (99%), Positives = 213/213 (100%), Gaps = 0/213 (0%) Query 1 MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP 60 MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP Sbjct 1 MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP 60 Query 61 PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI 120 PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI Sbjct 61 PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI 120 Query 121 DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT 180 DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAA+LRRIRLTPAGPDTADTAAEVFGT Sbjct 121 DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAILRRIRLTPAGPDTADTAAEVFGT 180 Query 181 YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG Sbjct 181 YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 >gi|289555513|ref|ZP_06444723.1| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis KZN 605] gi|289440145|gb|EFD22638.1| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis KZN 605] Length=212 Score = 421 bits (1081), Expect = 4e-116, Method: Compositional matrix adjust. Identities = 212/212 (100%), Positives = 212/212 (100%), Gaps = 0/212 (0%) Query 2 MASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIPP 61 MASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIPP Sbjct 1 MASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIPP 60 Query 62 CGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVID 121 CGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVID Sbjct 61 CGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVID 120 Query 122 RRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTY 181 RRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTY Sbjct 121 RRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTY 180 Query 182 SRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 SRGDRIHAIACRVEQRPAGNETRWLMVALHIG Sbjct 181 SRGDRIHAIACRVEQRPAGNETRWLMVALHIG 212 >gi|308232387|ref|ZP_07415901.2| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis SUMu001] gi|308370197|ref|ZP_07420622.2| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis SUMu002] gi|308372471|ref|ZP_07428797.2| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis SUMu004] 16 more sequence titles Length=183 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 182/183 (99%), Positives = 183/183 (100%), Gaps = 0/183 (0%) Query 31 LTISPIANSPGDTFAVTPVVEYEPPPRNIPPCGQSSHAARRPHTPQLARRQPIRPSGRAP 90 +TISPIANSPGDTFAVTPVVEYEPPPRNIPPCGQSSHAARRPHTPQLARRQPIRPSGRAP Sbjct 1 MTISPIANSPGDTFAVTPVVEYEPPPRNIPPCGQSSHAARRPHTPQLARRQPIRPSGRAP 60 Query 91 AAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAG 150 AAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAG Sbjct 61 AAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAG 120 Query 151 HQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVAL 210 HQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVAL Sbjct 121 HQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVAL 180 Query 211 HIG 213 HIG Sbjct 181 HIG 183 >gi|308373678|ref|ZP_07433298.2| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis SUMu005] gi|308374811|ref|ZP_07437497.2| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis SUMu006] gi|308336775|gb|EFP25626.1| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis SUMu005] gi|308340610|gb|EFP29461.1| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis SUMu006] Length=98 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 97/98 (99%), Positives = 98/98 (100%), Gaps = 0/98 (0%) Query 116 VLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAA 175 +LEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAA Sbjct 1 MLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAA 60 Query 176 EVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 EVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG Sbjct 61 EVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 98 >gi|118462376|ref|YP_883342.1| hypothetical protein MAV_4197 [Mycobacterium avium 104] gi|118163663|gb|ABK64560.1| conserved hypothetical protein [Mycobacterium avium 104] Length=186 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 105/187 (57%), Positives = 122/187 (66%), Gaps = 5/187 (2%) Query 31 LTISPIANSPGDTFAVTPVVEYEPP----PRNIPPCGQSSHAARRPHTPQLARRQPIRPS 86 + P+AN P D F V PVV+YEP PR + C S+ A R + R P Sbjct 1 MNTGPVAN-PSDAFTVVPVVDYEPQTQDVPRALAQCRPSARAPLRRGGGHASPRACGGPP 59 Query 87 GRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSR 146 GRA A S +LR+A FADAALRRVLEVIDRRRP QL PLLAP LVDSV+AV R Sbjct 60 GRAAAPQAGAVMSAQLREAAVFADAALRRVLEVIDRRRPAAQLNPLLAPSLVDSVVAVGR 119 Query 147 TAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWL 206 + G + GAA+LRR+RL PAG TAAEVFG YSRG+R+HAIACRVEQ P TRW+ Sbjct 120 SLTGPEPGAAVLRRMRLQPAGHGDPQTAAEVFGCYSRGNRMHAIACRVEQVPGAGGTRWM 179 Query 207 MVALHIG 213 +VALHIG Sbjct 180 VVALHIG 186 >gi|41409446|ref|NP_962282.1| hypothetical protein MAP3348 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398277|gb|AAS05898.1| hypothetical protein MAP_3348 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459557|gb|EGO38493.1| hypothetical protein MAPs_02110 [Mycobacterium avium subsp. paratuberculosis S397] Length=186 Score = 181 bits (460), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 105/187 (57%), Positives = 123/187 (66%), Gaps = 5/187 (2%) Query 31 LTISPIANSPGDTFAVTPVVEYEPP----PRNIPPCGQSSHAARRPHTPQLARRQPIRPS 86 + P+AN P D F V PVV+YEP PR + C S+ A R + + R P Sbjct 1 MNTGPVAN-PSDAFTVVPVVDYEPQTQDVPRALAQCRPSARAPLRRGSGHASPRACGGPP 59 Query 87 GRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSR 146 GRA A + S +LR+A FADAALRRVLEVIDRRRP QL PLLAP LVDSV+AV R Sbjct 60 GRAAAPPSGAVMSAQLREAAVFADAALRRVLEVIDRRRPAAQLNPLLAPSLVDSVVAVGR 119 Query 147 TAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWL 206 + G GAA+LRR+RL PAG TAAEVFG YSRG+R+HAIACRVEQ P TRW+ Sbjct 120 SLTGPAPGAAVLRRMRLQPAGHGDPQTAAEVFGCYSRGNRMHAIACRVEQVPGAGGTRWM 179 Query 207 MVALHIG 213 +VALHIG Sbjct 180 VVALHIG 186 >gi|183981332|ref|YP_001849623.1| hypothetical protein MMAR_1310 [Mycobacterium marinum M] gi|183174658|gb|ACC39768.1| conserved hypothetical protein [Mycobacterium marinum M] Length=212 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/189 (59%), Positives = 124/189 (66%), Gaps = 8/189 (4%) Query 27 GGCPLTISP-IANSPGDTFAVTPVVEYEPPPRNIPPCGQSSHAARRPHTPQLARRQ-PIR 84 G C L+I P A FAV PVVEYEP R + C SSHA P P+LAR P R Sbjct 30 GECHLSIGPDAAAPRRAAFAVIPVVEYEPASRTVERCRPSSHA---PARPRLARTGGPAR 86 Query 85 PSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAV 144 G PAA + A S +RQA F DAALRRVLEVIDRRRP GQLR LL PGLVDSVL+ Sbjct 87 --GEQPAATATDAMSAPMRQAAAFTDAALRRVLEVIDRRRPAGQLRSLLTPGLVDSVLSA 144 Query 145 SRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETR 204 S++ AG + G A LRR+ L P DTAAEVFGTYSR DRIHAIACRVE+ A R Sbjct 145 SQSMAG-RNGTAALRRLGLQPVACAGRDTAAEVFGTYSRADRIHAIACRVERVAALGTPR 203 Query 205 WLMVALHIG 213 W++VALHIG Sbjct 204 WVVVALHIG 212 >gi|254822984|ref|ZP_05227985.1| hypothetical protein MintA_23854 [Mycobacterium intracellulare ATCC 13950] Length=170 Score = 171 bits (432), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 104/182 (58%), Positives = 120/182 (66%), Gaps = 29/182 (15%) Query 48 PVVEYEPP----PRNIPPCGQSS---------HAARRPHTPQLARRQPIRPSGRAPAAVT 94 PVV+YEP PR +P C SS HA R +T QL+R APA V Sbjct 2 PVVDYEPETQDVPRTVPSCRPSSRTPLRRRGGHATPRSYTGQLSR---------APAPVM 52 Query 95 STAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGH--- 151 S R+RQA TFADAALRRVLEVIDRRRP QL PLL+P LVDSV+AV R+ AG Sbjct 53 SA----RMRQAATFADAALRRVLEVIDRRRPAAQLHPLLSPSLVDSVVAVGRSVAGRAPG 108 Query 152 QQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALH 211 GAA+LRR+RL PAG D AAEVFG+YSRG+R+HAIACRVEQ A + RW++VALH Sbjct 109 HAGAAVLRRMRLQPAGHRDPDAAAEVFGSYSRGNRVHAIACRVEQVGAASGARWMVVALH 168 Query 212 IG 213 IG Sbjct 169 IG 170 >gi|342861435|ref|ZP_08718082.1| hypothetical protein MCOL_21221 [Mycobacterium colombiense CECT 3035] gi|342130924|gb|EGT84213.1| hypothetical protein MCOL_21221 [Mycobacterium colombiense CECT 3035] Length=159 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 91/133 (69%), Positives = 100/133 (76%), Gaps = 4/133 (3%) Query 81 QPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDS 140 QP R P AV S PRLRQA FADAALRRVLEVIDRRRP QL PLLAP LVDS Sbjct 31 QPSRTPEPGPGAVMS----PRLRQAAVFADAALRRVLEVIDRRRPAAQLTPLLAPSLVDS 86 Query 141 VLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAG 200 V AV R+AAG +GAA+LRR+RL AG D+AAEVFG+YSRG+RIHAIACRVEQ A Sbjct 87 VAAVGRSAAGGHRGAAVLRRMRLQAAGHRDPDSAAEVFGSYSRGNRIHAIACRVEQVDAA 146 Query 201 NETRWLMVALHIG 213 TRW++VALHIG Sbjct 147 GATRWMVVALHIG 159 >gi|240170362|ref|ZP_04749021.1| hypothetical protein MkanA1_13700 [Mycobacterium kansasii ATCC 12478] Length=113 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/112 (68%), Positives = 87/112 (78%), Gaps = 3/112 (2%) Query 102 LRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRI 161 +RQA F DAALRRVLEVIDRRRP QLR LLAP LV +VL+VS AG Q G A+LRR+ Sbjct 5 MRQAAVFTDAALRRVLEVIDRRRPATQLRSLLAPNLVGAVLSVSEAVAG-QHGTAVLRRV 63 Query 162 RLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 RL P G ++D+AAEVFG+YSRGDRIHAIA RVE+ A RWL+VALHIG Sbjct 64 RLQPVG--SSDSAAEVFGSYSRGDRIHAIAGRVERVTAAGGARWLVVALHIG 113 >gi|296168975|ref|ZP_06850642.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896361|gb|EFG76016.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=102 Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 73/105 (70%), Positives = 85/105 (81%), Gaps = 3/105 (2%) Query 109 ADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGP 168 ADAALRRVLEVIDRRRP QLRPLLAP LVDSV++V + GH +GAA+LRR+RL PAG Sbjct 1 ADAALRRVLEVIDRRRPAAQLRPLLAPSLVDSVVSVGHSLTGH-EGAAVLRRLRLQPAGH 59 Query 169 DTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 ++AAEV G+YSRG RIHA+ACRVE+ AG RWL+VALHIG Sbjct 60 RDPESAAEVCGSYSRGRRIHALACRVERVGAGG--RWLVVALHIG 102 >gi|254776634|ref|ZP_05218150.1| hypothetical protein MaviaA2_18476 [Mycobacterium avium subsp. avium ATCC 25291] Length=89 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 59/89 (67%), Positives = 68/89 (77%), Gaps = 0/89 (0%) Query 125 PVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRG 184 P QL PLLAP LVDSV+AV R+ G + GAA+LRR+RL PAG TAAEVFG YSRG Sbjct 1 PAAQLNPLLAPSLVDSVVAVGRSLTGPEPGAAVLRRMRLQPAGHGDPQTAAEVFGCYSRG 60 Query 185 DRIHAIACRVEQRPAGNETRWLMVALHIG 213 +R+HAIACRVEQ P TRW++VALHIG Sbjct 61 NRMHAIACRVEQVPGAGGTRWMVVALHIG 89 >gi|145225282|ref|YP_001135960.1| hypothetical protein Mflv_4704 [Mycobacterium gilvum PYR-GCK] gi|315445579|ref|YP_004078458.1| hypothetical protein Mspyr1_40370 [Mycobacterium sp. Spyr1] gi|145217768|gb|ABP47172.1| conserved hypothetical alanine arginine proline rich protein [Mycobacterium gilvum PYR-GCK] gi|315263882|gb|ADU00624.1| hypothetical protein Mspyr1_40370 [Mycobacterium sp. Spyr1] Length=173 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/172 (42%), Positives = 101/172 (59%), Gaps = 19/172 (11%) Query 44 FAVTPVVEYEPPPRNIP--PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPR 101 + +PV++YEP P+ I PC S +A A +P+RP R P ++P Sbjct 19 WVTSPVIDYEPVPQPIAERPCPMPSGSAL-----HRASLRPLRPPQRTP-----VRETPP 68 Query 102 LRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRI 161 R A FA+A+LRRV+EVIDRRRPV QLRPL+ P L+D V+A A + G+A LR++ Sbjct 69 PRSAVVFAEASLRRVIEVIDRRRPVSQLRPLMTPFLIDCVIA---CAEAPRTGSATLRKV 125 Query 162 RLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 R+ T AAEVF +++R R+HAIA R+E+ + W +VAL IG Sbjct 126 RVRSVDTGTEVGAAEVFASFTRAGRVHAIAGRIER----HRDSWRLVALQIG 173 >gi|120402762|ref|YP_952591.1| hypothetical protein Mvan_1763 [Mycobacterium vanbaalenii PYR-1] gi|119955580|gb|ABM12585.1| conserved hypothetical alanine arginine proline rich protein [Mycobacterium vanbaalenii PYR-1] Length=170 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/183 (41%), Positives = 100/183 (55%), Gaps = 27/183 (14%) Query 34 SPIANSPGDTFAVTPVVEYEPPPRNIPPCGQSSHAARRPHTPQLARRQPIRPSGRAPAAV 93 SP +SP + +PV++YEP P+ PC S AA RPS RA A Sbjct 12 SPPVSSP--VWKTSPVIDYEPAPQ---PCPTPSSAALH------------RPSPRALRAH 54 Query 94 TSTAKSPRLR--QAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGH 151 A FA+ ALR+V+EVIDRRRPV QLRPL+ P LV+ V+A AA Sbjct 55 RPPHPHEPPPPRSAVVFAETALRQVIEVIDRRRPVAQLRPLMTPVLVECVIA---RAAAP 111 Query 152 QQGAAMLRRIRLTPAGPDTAD-TAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVAL 210 + G+A LRR+R+ + TAAEVF ++SR R+HA+A R+++ + W +VAL Sbjct 112 RTGSATLRRVRVRSVDTGGGEVTAAEVFASFSRSGRVHAVAGRIDR----HRDSWRLVAL 167 Query 211 HIG 213 IG Sbjct 168 QIG 170 >gi|118469426|ref|YP_886247.1| hypothetical protein MSMEG_1880 [Mycobacterium smegmatis str. MC2 155] gi|118170713|gb|ABK71609.1| hypothetical alanine arginine proline rich protein [Mycobacterium smegmatis str. MC2 155] Length=180 Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/204 (41%), Positives = 103/204 (51%), Gaps = 41/204 (20%) Query 24 DDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPR---NIPPCGQSSHAARRPHTPQLARR 80 +A P T P+A P V PV++YEPP + ++PPC + R HTP+ R Sbjct 4 SEAAPSPATDLPVAG-PAPRPVVEPVIDYEPPVQPITSVPPCPAPTALHR--HTPRTLRL 60 Query 81 QPIRPSGRAPAAVTSTAKSPRLRQ-----AGTFADAALRRVLEVIDRRRPVGQLRPLLAP 135 P P + Q AG FA ALRRVLEVIDRRR QLR +L P Sbjct 61 VP-----------------PPVEQQVHDGAGQFAAMALRRVLEVIDRRRSPAQLRAVLNP 103 Query 136 GLVDSVLAVSRTAAGHQQGAAMLRRIRL-TPAGPDTAD-----TAAEVFGTYSRGDRIHA 189 L+DSV+A+S+ G A LRR+RL AGP TAAE+F TY+RG R+ A Sbjct 104 LLIDSVVALSQARHG---APANLRRVRLRAAAGPTRGTDAGYGTAAEIFATYTRGQRVRA 160 Query 190 IACRVEQRPAGNETRWLMVALHIG 213 IA R E RW + AL IG Sbjct 161 IAARAEL----QSGRWQLTALQIG 180 >gi|333991610|ref|YP_004524224.1| hypothetical protein JDM601_2970 [Mycobacterium sp. JDM601] gi|333487578|gb|AEF36970.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=109 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/109 (55%), Positives = 68/109 (63%), Gaps = 3/109 (2%) Query 107 TFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPA 166 FADAALRRVLEVID RR + PLLA GL +SVL+ AA A L+R+R PA Sbjct 2 VFADAALRRVLEVIDGRRSAAHMYPLLAAGLAESVLSARAAAAVRGG-PATLQRVRARPA 60 Query 167 GPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAG--NETRWLMVALHIG 213 G TA E FGTY RG R HA+ACR+E+ A T W +VALHIG Sbjct 61 GSAEPATAVEAFGTYRRGRRTHALACRIERVAATGPESTAWQIVALHIG 109 >gi|169630633|ref|YP_001704282.1| hypothetical protein MAB_3552 [Mycobacterium abscessus ATCC 19977] gi|169242600|emb|CAM63628.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=156 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/110 (50%), Positives = 71/110 (65%), Gaps = 10/110 (9%) Query 104 QAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRL 163 QA FADAA+RRVLEV+DRRRP+ QLRPLL G + +VLA R++ AA L +IR+ Sbjct 57 QAVAFADAAMRRVLEVMDRRRPIAQLRPLLGDGPLSAVLA--RSSRVPATTAARLSKIRV 114 Query 164 TPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 AD +AE+FGT+ RG R+ A A R+ GN WL+VAL +G Sbjct 115 R----RCADDSAEIFGTFERGGRVRAFAGRIRA-VRGN---WLVVALQLG 156 >gi|325675701|ref|ZP_08155385.1| hypothetical protein HMPREF0724_13167 [Rhodococcus equi ATCC 33707] gi|325553672|gb|EGD23350.1| hypothetical protein HMPREF0724_13167 [Rhodococcus equi ATCC 33707] Length=170 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/176 (38%), Positives = 91/176 (52%), Gaps = 23/176 (13%) Query 46 VTPVVEYEPPPRN-IPPCGQSSHAA-------RRPHTPQLARRQPIRPSGRAPAAVTSTA 97 ++P +EPP RN + P G+ A R PH + RR RP+ A Sbjct 8 ISPAPHFEPPARNGVHPLGRRPVAEPRVGTTRRSPHDGRSPRRTLPRPNA-------ENA 60 Query 98 KSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTA-AGHQQGAA 156 P LR+ F + +LR LEV+D RRP LRPLL + D V A+ R+A AG + G A Sbjct 61 APPELRR---FTEHSLRLTLEVLDGRRPPAHLRPLLTKSVHDLVPALVRSAPAGRRLGGA 117 Query 157 MLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHI 212 +L RI + D AAEVFGTY+RG R+ A+A R+E+ + W + +L I Sbjct 118 ILTRIHIRVVQVD----AAEVFGTYNRGGRVFALAARIERGKGAHPAGWAITSLQI 169 >gi|108798325|ref|YP_638522.1| hypothetical protein Mmcs_1354 [Mycobacterium sp. MCS] gi|119867422|ref|YP_937374.1| hypothetical protein Mkms_1372 [Mycobacterium sp. KMS] gi|108768744|gb|ABG07466.1| conserved hypothetical alanine arginine proline rich protein [Mycobacterium sp. MCS] gi|119693511|gb|ABL90584.1| conserved hypothetical alanine arginine proline rich protein [Mycobacterium sp. KMS] Length=174 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/111 (56%), Positives = 73/111 (66%), Gaps = 10/111 (9%) Query 103 RQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIR 162 R A FAD ALRRVLEV+DRRRPV L+PLLAP L+D+V A+ R G A LRR+R Sbjct 74 RAAVAFADVALRRVLEVLDRRRPVVHLKPLLAPPLLDTVGALCRVRYGQ---PATLRRVR 130 Query 163 LTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 L AGP AAEV TY+RG+R+ AIA RVE + RW +VAL IG Sbjct 131 LRSAGP----LAAEVCATYTRGERVRAIAARVE---VVGDGRWQLVALQIG 174 >gi|111023293|ref|YP_706265.1| hypothetical protein RHA1_ro06330 [Rhodococcus jostii RHA1] gi|110822823|gb|ABG98107.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=174 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/108 (49%), Positives = 65/108 (61%), Gaps = 10/108 (9%) Query 108 FADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSV--LAVSRTAAGHQQGAAMLRRIRLTP 165 F + A R VLEV+DRRR V QLRPL+ P L+D V LA+S + A + G A L R+ L Sbjct 75 FTEQAFRLVLEVLDRRRNVRQLRPLVTPSLIDVVRTLALSESPA-RRLGVATLVRVHLRA 133 Query 166 AGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 P A E FGTY RG RI IA RVEQ+ ++T W + +L IG Sbjct 134 VEP----CAFEAFGTYGRGPRIFVIAARVEQQ---SDTGWTVTSLVIG 174 >gi|226365800|ref|YP_002783583.1| hypothetical protein ROP_63910 [Rhodococcus opacus B4] gi|226244290|dbj|BAH54638.1| hypothetical protein [Rhodococcus opacus B4] Length=174 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/108 (48%), Positives = 65/108 (61%), Gaps = 10/108 (9%) Query 108 FADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSV--LAVSRTAAGHQQGAAMLRRIRLTP 165 F + A R VLEV+DRRR V QLRPL+ P L+D V LA++ + A + G A L R+ L Sbjct 75 FTEQAFRLVLEVLDRRRNVRQLRPLVTPSLLDVVRTLALAESPA-RRLGVAALVRVHLRA 133 Query 166 AGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 P E FGTYSRG RI IA RVEQ+ ++T W + +L IG Sbjct 134 VEP----CVFEAFGTYSRGPRIFVIAARVEQQ---SDTGWTVTSLVIG 174 >gi|312140669|ref|YP_004008005.1| hypothetical protein REQ_33300 [Rhodococcus equi 103S] gi|311890008|emb|CBH49326.1| hypothetical protein REQ_33300 [Rhodococcus equi 103S] Length=141 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/144 (39%), Positives = 76/144 (53%), Gaps = 15/144 (10%) Query 70 RRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQL 129 R PH + RR RP+ A P LR+ F + +LR LEV+D RRP L Sbjct 11 RSPHDGRSPRRTLPRPNA-------ENAAPPELRR---FTEHSLRLTLEVLDGRRPPAHL 60 Query 130 RPLLAPGLVDSVLAVSRTA-AGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIH 188 RPLL + D V A+ R+A AG + G A+L I + D AAEVFGTY+RG R+ Sbjct 61 RPLLTKSVHDLVPALVRSAPAGRRLGGAILTCIHIRVVHVD----AAEVFGTYNRGGRVF 116 Query 189 AIACRVEQRPAGNETRWLMVALHI 212 A+A R+E+ + W + +L I Sbjct 117 ALAARIERGKGAHPAGWAITSLQI 140 >gi|126433990|ref|YP_001069681.1| hypothetical protein Mjls_1388 [Mycobacterium sp. JLS] gi|126233790|gb|ABN97190.1| conserved hypothetical alanine arginine proline rich protein [Mycobacterium sp. JLS] Length=174 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/103 (56%), Positives = 68/103 (67%), Gaps = 10/103 (9%) Query 111 AALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDT 170 ALRRVLEV+DRRRPV L+PLLAP L+D+V A+ R G A LRR+RL AGP Sbjct 82 VALRRVLEVLDRRRPVVHLKPLLAPPLLDTVGALCRVRYGR---PATLRRVRLRSAGP-- 136 Query 171 ADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 AAEV TY+RG+R+ AIA RVE + RW +VAL IG Sbjct 137 --LAAEVCATYTRGERVRAIAARVE---VVGDGRWQLVALQIG 174 >gi|289571461|ref|ZP_06451688.1| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis T17] gi|289545215|gb|EFD48863.1| hypothetical alanine, arginine and proline rich protein [Mycobacterium tuberculosis T17] Length=77 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/31 (97%), Positives = 30/31 (97%), Gaps = 0/31 (0%) Query 1 MMASNQTAAQHSSATLQQAPRSIDDAGGCPL 31 MMASNQTAAQHSSATLQQAPRSIDDAGG PL Sbjct 1 MMASNQTAAQHSSATLQQAPRSIDDAGGVPL 31 >gi|226305661|ref|YP_002765621.1| hypothetical protein RER_21740 [Rhodococcus erythropolis PR4] gi|226184778|dbj|BAH32882.1| hypothetical protein RER_21740 [Rhodococcus erythropolis PR4] Length=199 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/194 (31%), Positives = 91/194 (47%), Gaps = 24/194 (12%) Query 32 TISPIANSPGD------TFAVTPVVEYEPPPRNI----PPCGQSSHAARRPHTPQLARRQ 81 TIS +S GD T + P ++EP + P C R T ++ RR Sbjct 16 TISDARSSGGDVMEQDCTIILEPAPQFEPHAHTVALTRPQCRPDRAQCR---TDRMLRRP 72 Query 82 PIRP-SGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDS 140 P +G + +A + P+L A F + +LR VLE +DRRR QL+ +L P +++ Sbjct 73 RKTPHNGTSSSAGFTHVLEPQLAGADVFWNRSLRLVLETVDRRRNPRQLKGVLTPSVLEV 132 Query 141 V--LAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRP 198 V L S +A + G A + R + T AEV TY+RG + A+A R++ Sbjct 133 VARLYTSEFSA-RKLGGAAVHRTHVQAVSKST----AEVCATYTRGTQTFAVAGRIDH-- 185 Query 199 AGNETRWLMVALHI 212 + T W + ALH+ Sbjct 186 -TDGTGWTVTALHV 198 >gi|54023108|ref|YP_117350.1| hypothetical protein nfa11410 [Nocardia farcinica IFM 10152] gi|54014616|dbj|BAD55986.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=166 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/111 (43%), Positives = 59/111 (54%), Gaps = 17/111 (15%) Query 108 FADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAA------GHQQGAAMLRRI 161 FA+ A+R LEV+DRRRPVGQL L P +VLA RT G G+A+ R+ Sbjct 66 FAERAVRMALEVLDRRRPVGQLARLADP----TVLAAVRTLVSADLVPGRALGSAVHLRV 121 Query 162 RLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHI 212 RL DT AEV+ Y RG R A+A RV + A T W + AL + Sbjct 122 RLRLLDTDT----AEVWAGYDRGGRRFALAARVARTRA---TGWRLTALRV 165 >gi|343927665|ref|ZP_08767133.1| hypothetical protein GOALK_097_00870 [Gordonia alkanivorans NBRC 16433] gi|343762306|dbj|GAA14059.1| hypothetical protein GOALK_097_00870 [Gordonia alkanivorans NBRC 16433] Length=201 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/140 (35%), Positives = 64/140 (46%), Gaps = 36/140 (25%) Query 104 QAGTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSR-------TAAGHQQG-- 154 +A F A R + EVIDRRR + L ++P +VD V A+ R AG G Sbjct 66 EARRFTVATSRLLFEVIDRRRGIAHLGDSVSPSIVDQVAALVRHDAFRVAETAGAPGGPP 125 Query 155 --AAMLRRIRLTPAGPDTADT-AAEVFGTYSRGDRIHAIACRVEQRP---AGN------- 201 +L+R+ + DT AAEVFG+Y G R+ A A RVE++P GN Sbjct 126 ARGTVLQRVHV-----QLCDTSAAEVFGSYLSGGRVRAFAGRVERKPRRVRGNDPRPGGA 180 Query 202 ---------ETRWLMVALHI 212 E RW +VAL Sbjct 181 GPRTGLGQVEYRWQLVALEF 200 >gi|296138811|ref|YP_003646054.1| hypothetical protein Tpau_1083 [Tsukamurella paurometabola DSM 20162] gi|296026945|gb|ADG77715.1| hypothetical protein Tpau_1083 [Tsukamurella paurometabola DSM 20162] Length=206 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/114 (35%), Positives = 51/114 (45%), Gaps = 20/114 (17%) Query 108 FADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAG 167 F + LR + EV++RRRP L + + +VD + ++ A G R+ A Sbjct 98 FVLSTLRPLFEVLERRRPAKHLTAIASGTVVDVLRVLAEAEAAQVTGWG-----RVHVAA 152 Query 168 P-----------DTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVAL 210 P D + AEVF TYSRGDRI A A RVE RW VA Sbjct 153 PRVLAPRPRPRTDDPEIGAEVFLTYSRGDRILAAAGRVES----TSGRWRWVAF 202 >gi|262203499|ref|YP_003274707.1| hypothetical protein Gbro_3626 [Gordonia bronchialis DSM 43247] gi|262086846|gb|ACY22814.1| hypothetical protein Gbro_3626 [Gordonia bronchialis DSM 43247] Length=112 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/112 (33%), Positives = 54/112 (49%), Gaps = 21/112 (18%) Query 116 VLEVIDRRRPVGQLRPLLAPGLVDSVLAVSR---TAAGHQQGAAMLRRIRLTPAGPDTAD 172 + EV+DRRR GQL +++P + + + + R +G AA +RR+ + P TA Sbjct 2 IFEVMDRRRGAGQLSGIVSPPVAEHLAVLVRHNVLRSGDPTAAAAVRRVHVQLRDPSTA- 60 Query 173 TAAEVFGTYSRGDRIHAIACRVEQRP--------------AGNETRWLMVAL 210 EVFGTY+ G R+ A A R ++ P + E RW MV Sbjct 61 ---EVFGTYAVGGRVRAFAGRAQRVPCRLPSVRAPRSHGLSKAEYRWQMVEF 109 >gi|326383269|ref|ZP_08204957.1| hypothetical protein SCNU_10044 [Gordonia neofelifaecis NRRL B-59395] gi|326198019|gb|EGD55205.1| hypothetical protein SCNU_10044 [Gordonia neofelifaecis NRRL B-59395] Length=152 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/118 (36%), Positives = 55/118 (47%), Gaps = 23/118 (19%) Query 112 ALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSR--------TAAGHQQGAAMLRRIRL 163 +L+ VLEV+D RRPV L + + V A+ R TAA AA L R+ + Sbjct 40 SLQHVLEVLDGRRPVDHLLRTVTEDVFAQVRALLRRRPPNSGNTAA--DTDAARLLRVHV 97 Query 164 TPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPA---------GNETRWLMVALHI 212 P AE FGT+ RGDR+ A+A R+E R E RW +V L I Sbjct 98 QLGAP----ARAEYFGTFVRGDRVRAVAGRLEVRAVRLPSKGGERRTEDRWTLVELSI 151 >gi|312199834|ref|YP_004019895.1| hypothetical protein FraEuI1c_6041 [Frankia sp. EuI1c] gi|311231170|gb|ADP84025.1| hypothetical protein FraEuI1c_6041 [Frankia sp. EuI1c] Length=261 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/127 (32%), Positives = 60/127 (48%), Gaps = 13/127 (10%) Query 88 RAPAAVTSTAKSPRLRQA-GTFADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSR 146 RAP + A+ R R++ G A +R ++EV+ RPV L P L ++ Sbjct 147 RAPTRIPQQARDSRFRESPGPAATIVVRAIVEVLAGVRPVAHLAGWATPQLQTALERF-- 204 Query 147 TAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWL 206 G G +M+R IR++ + AEV SR DR+ A+A R+E + RW Sbjct 205 --GGQYPGRSMVRSIRIS----EPRAGVAEVVAVISRTDRVAALALRMET----TDGRWQ 254 Query 207 MVALHIG 213 + AL IG Sbjct 255 VTALQIG 261 >gi|258651605|ref|YP_003200761.1| hypothetical protein Namu_1370 [Nakamurella multipartita DSM 44233] gi|258554830|gb|ACV77772.1| hypothetical protein Namu_1370 [Nakamurella multipartita DSM 44233] Length=192 Score = 41.6 bits (96), Expect = 0.077, Method: Compositional matrix adjust. Identities = 54/153 (36%), Positives = 69/153 (46%), Gaps = 20/153 (13%) Query 66 SHAARRPHTPQLARRQPIRPSGRAPAAV----TSTAKSPRLRQAGTFADAALRRVLEVID 121 S ARRP T + PS A A V T+TA+ P +A AL +EV+ Sbjct 55 STPARRPVTGSTSVACEAVPSWSAEADVGVRRTATAQLPAPGRAAQVYATAL---VEVLA 111 Query 122 RRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAM-LRRIRLTPAGPDTADTAAEVFGT 180 RRPVGQLR AP +V A A GA + + +R+ AD EV T Sbjct 112 GRRPVGQLRVHTAP----AVFAGLANRAAQGWGAPVQVASVRIC----QPADGVTEVSAT 163 Query 181 YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 R HA+A R+E G + RW + AL IG Sbjct 164 VRGARRAHAMAFRLE----GVDGRWRITALDIG 192 >gi|71276685|ref|ZP_00652955.1| conserved hypothetical protein [Xylella fastidiosa Dixon] gi|71162511|gb|EAO12243.1| conserved hypothetical protein [Xylella fastidiosa Dixon] Length=292 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 33/134 (25%), Positives = 55/134 (42%), Gaps = 6/134 (4%) Query 71 RPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLR 130 RP Q+ R I+ SG+ T A + Q G A + ++LE+ P +L+ Sbjct 9 RPFITQVMNRLYIQDSGQTYRNTTYQAYTKPTHQLGELVTAGIEKLLEITKIASPASRLK 68 Query 131 PLLAPGLVDSVLAVSRTA----AGHQQGAAMLRRIRLTPAGPDTADTAAEV--FGTYSRG 184 A L+ + + + GH +G L AG + DT EV + + G Sbjct 69 AAAAKELMYNTEQDNHSNLVYLEGHSRGTMTLSNALRVLAGFNVGDTKLEVLAYNPAAEG 128 Query 185 DRIHAIACRVEQRP 198 +R+ A V ++P Sbjct 129 NRLAEAAALVTKKP 142 >gi|281212429|gb|EFA86589.1| hypothetical protein PPL_00390 [Polysphondylium pallidum PN500] Length=696 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 32/125 (26%), Positives = 55/125 (44%), Gaps = 7/125 (5%) Query 47 TPVVEYEPPPRNIPPCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAG 106 TPVV + P P + P + TP + ++QP + ++PA T TA SP L A Sbjct 550 TPVVHHTPTPATVAPVHHTPTPTPAVSTP-VVQQQPTPDTKKSPAVSTPTASSPTLSSAS 608 Query 107 T-FADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTP 165 T + A ++L+ I + +L L A+ + A ++ LR + +P Sbjct 609 TPVSTAGFDKLLQPI-----IQELTKQLVDAHQKETQALQQRIAQLEKEVKELRESKGSP 663 Query 166 AGPDT 170 + P + Sbjct 664 SIPSS 668 >gi|170730518|ref|YP_001775951.1| hypothetical protein Xfasm12_1394 [Xylella fastidiosa M12] gi|167965311|gb|ACA12321.1| conserved hypothetical protein [Xylella fastidiosa M12] Length=292 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 34/134 (26%), Positives = 54/134 (41%), Gaps = 6/134 (4%) Query 71 RPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLR 130 RP Q+ R I+ SG+ T A + Q G A + ++LE+ P +L+ Sbjct 9 RPLITQVMNRLYIQDSGQTYRNTTYQAYTKPTHQLGELVTAGIEKLLEITKIASPASRLQ 68 Query 131 PLLAPGLVDSVLAVSRT----AAGHQQGAAMLRRIRLTPAGPDTADTAAEV--FGTYSRG 184 A L+ + T GH +G L AG + DT EV + + G Sbjct 69 AAAAKELMYNTEDKKYTNPIYLEGHSRGTMTLSNALRVLAGFNVGDTKLEVLAYNPAAEG 128 Query 185 DRIHAIACRVEQRP 198 +R+ A V ++P Sbjct 129 NRLAEAAALVTKKP 142 >gi|324507261|gb|ADY43082.1| Protein MCM10 [Ascaris suum] Length=693 Score = 38.1 bits (87), Expect = 0.91, Method: Composition-based stats. Identities = 27/78 (35%), Positives = 40/78 (52%), Gaps = 4/78 (5%) Query 77 LARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQLRPLLAPG 136 + RQPI G+ ++ + QA T AD+ALR+ + VI R+ + +L P G Sbjct 434 IGNRQPILGRGQKDGVISLCSPQKNTAQA-TAADSALRKAINVIRRKGGIEKLDP---NG 489 Query 137 LVDSVLAVSRTAAGHQQG 154 L SV +R A G+ QG Sbjct 490 LSASVRNRARGAVGNDQG 507 >gi|342888768|gb|EGU87987.1| hypothetical protein FOXB_01470 [Fusarium oxysporum Fo5176] Length=177 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 49/164 (30%), Positives = 69/164 (43%), Gaps = 18/164 (10%) Query 29 CPLTISPIANSPGDTFAVTPVVEYEPPPRNIPPCGQSSHAARRPHTPQLARRQPIRPSGR 88 PLT+SP + P A T Y+ P NIPP AA Q + + SG Sbjct 14 VPLTVSPFVSLPT---ATTLSYNYKTMPSNIPPSSLGIEAASDNPAGQTKPKYVVSNSGH 70 Query 89 A--PAAVTSTAKSPRLRQAGTFADA--ALRRVLEVIDRRRPVGQLRPLLAPGLVDS---V 141 A P + ++ ++ + DA LR E I R + R +APG +DS + Sbjct 71 AAHPEDIIASCRALQAYVTKMQEDAERELREFDEKIKARELAEKRR--VAPGWLDSEMHM 128 Query 142 LAVSRTAAGHQQGAAMLRRIRLTPAGPD---TADTAAE---VFG 179 L R+ QQGA + + T +G + T D AE VFG Sbjct 129 LEPERSTPVQQQGAGNVPEHQNTQSGTNTNATEDQGAELDRVFG 172 >gi|294629673|ref|ZP_06708233.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292833006|gb|EFF91355.1| conserved hypothetical protein [Streptomyces sp. e14] Length=112 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/107 (32%), Positives = 51/107 (48%), Gaps = 12/107 (11%) Query 108 FADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAA-MLRRIRLTPA 166 FAD R+L V+ +RPV + A D + ++ +GA ++R I A Sbjct 13 FAD----RLLAVLSGQRPVHWMLRHTAGRAYDELARLAERGLLRTRGARPVVRDIGYYEA 68 Query 167 GPDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 PD A EVF GD++ A+A R+EQ G + RW A+ +G Sbjct 69 RPD----ALEVFARIGAGDQLRALAFRLEQ---GKDHRWRCTAIELG 108 >gi|239814046|ref|YP_002942956.1| aldose 1-epimerase [Variovorax paradoxus S110] gi|239800623|gb|ACS17690.1| Aldose 1-epimerase [Variovorax paradoxus S110] Length=357 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 33/94 (36%), Positives = 44/94 (47%), Gaps = 6/94 (6%) Query 25 DAGGCPLTISPIANSPGDTFAVTPVVE-YEPPPRNIPPCGQSSHAA---RRPHTPQLARR 80 DAG PL ++P+A +P D A TPV E + P + G H R P LA R Sbjct 214 DAGLIPLGLAPVAGTPFDFRAATPVGERIDAPHEQLRVAGGYDHNWVLDREPAGLALAAR 273 Query 81 QPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALR 114 PSGR V +T + + +G F D +LR Sbjct 274 LEHPPSGRV-MEVHTTEPAVQF-YSGNFLDGSLR 305 >gi|152967749|ref|YP_001363533.1| hypothetical protein Krad_3806 [Kineococcus radiotolerans SRS30216] gi|151362266|gb|ABS05269.1| hypothetical protein Krad_3806 [Kineococcus radiotolerans SRS30216] Length=163 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/42 (41%), Positives = 24/42 (58%), Gaps = 0/42 (0%) Query 172 DTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 D AEV G GDR+ A+A RV++ + RW + AL +G Sbjct 122 DGVAEVGGVLQDGDRVRAVALRVDRSTDRSGERWRVTALELG 163 >gi|302530012|ref|ZP_07282354.1| predicted protein [Streptomyces sp. AA4] gi|302438907|gb|EFL10723.1| predicted protein [Streptomyces sp. AA4] Length=166 Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 11/100 (11%) Query 113 LRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTAD 172 L +LEV+ RR GQ+RPL+ L + + S A LR R A+ Sbjct 62 LNAILEVLAGRRAAGQIRPLVDDALFSRLSSQSLMPGLRHHVAGDLRVCR-------PAE 114 Query 173 TAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHI 212 TA E G R+ A+A R E+ T W+ H+ Sbjct 115 TALETSTIIHSGPRVLALAARFER----TRTGWVCTRFHV 150 >gi|288919637|ref|ZP_06413965.1| conserved hypothetical protein [Frankia sp. EUN1f] gi|288348926|gb|EFC83175.1| conserved hypothetical protein [Frankia sp. EUN1f] Length=225 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 31/106 (30%), Positives = 49/106 (47%), Gaps = 12/106 (11%) Query 109 ADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAG-HQQGAAMLRRIRLTPAG 167 A +R ++EV+ RP+ L P L + RTAA + + +R +R++ Sbjct 131 AAVVVRLIVEVLSGARPMAHLTPWTTADLQHDL---QRTAAALTNRQPSQVRSVRVSEPT 187 Query 168 PDTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 P A EV SRG R+ A+A R+E+ RW + L +G Sbjct 188 PGIA----EVSAVISRGQRMRALALRMER----GADRWQVTTLQLG 225 >gi|171692977|ref|XP_001911413.1| hypothetical protein [Podospora anserina S mat+] gi|170946437|emb|CAP73238.1| unnamed protein product [Podospora anserina S mat+] Length=195 Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust. Identities = 39/122 (32%), Positives = 57/122 (47%), Gaps = 15/122 (12%) Query 29 CPLTISPIANSPGDTFAVTPVVEYEPPPRNIPP--CGQSSHAARRPHTPQLARRQPIRPS 86 PLT+SP N P A T Y+P P +PP G +S +A P+ + PS Sbjct 13 VPLTVSPFVNLP---TATTLPYTYKPMPSALPPSASGITSDSAAGGPEPKYV----VSPS 65 Query 87 GRA--PAAVTSTAKSPRLRQAGTFADAALRRVLEVIDRRRPVGQL--RPLLAPGLVDSVL 142 G A P + ++ ++ R A ADA ++ ID R +L + LAPG +DS + Sbjct 66 GHAAHPNDIIASCRALRDHIAKLTADAEAE--IKAIDERIKAAELAEKRRLAPGWLDSDV 123 Query 143 AV 144 V Sbjct 124 RV 125 >gi|158317581|ref|YP_001510089.1| hypothetical protein Franean1_5837 [Frankia sp. EAN1pec] gi|158112986|gb|ABW15183.1| conserved hypothetical protein [Frankia sp. EAN1pec] Length=241 Score = 34.7 bits (78), Expect = 8.9, Method: Compositional matrix adjust. Identities = 31/105 (30%), Positives = 47/105 (45%), Gaps = 10/105 (9%) Query 109 ADAALRRVLEVIDRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGP 168 A +R ++EV+ RP L P L + + A Q + +R +R++ P Sbjct 147 AAVVVRVIIEVLSGARPAAHLAPWSTAALQSDFQRTASSLATRQ--PSQVRSVRVSEPLP 204 Query 169 DTADTAAEVFGTYSRGDRIHAIACRVEQRPAGNETRWLMVALHIG 213 A EV SRG R+ A+A R+E AG RW + L +G Sbjct 205 GVA----EVSAVVSRGPRVRALALRMEHA-AG---RWQVTTLQLG 241 Lambda K H 0.318 0.131 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 251148961304 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40