BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3237c
Length=160
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610373|ref|NP_217754.1| hypothetical protein Rv3237c [Mycob... 305 1e-81
gi|289575957|ref|ZP_06456184.1| conserved hypothetical protein [... 303 4e-81
gi|306969333|ref|ZP_07481994.1| hypothetical protein TMIG_02754 ... 285 1e-75
gi|41409448|ref|NP_962284.1| hypothetical protein MAP3350c [Myco... 261 2e-68
gi|342861437|ref|ZP_08718084.1| TrkA domain-containing protein [... 259 8e-68
gi|296168973|ref|ZP_06850640.1| TrkA-C family protein [Mycobacte... 258 2e-67
gi|15827341|ref|NP_301604.1| hypothetical protein ML0781 [Mycoba... 248 2e-64
gi|108799829|ref|YP_640026.1| TrkA-C [Mycobacterium sp. MCS] >gi... 247 5e-64
gi|183981330|ref|YP_001849621.1| hypothetical protein MMAR_1308 ... 238 2e-61
gi|118618051|ref|YP_906383.1| hypothetical protein MUL_2573 [Myc... 237 4e-61
gi|240170360|ref|ZP_04749019.1| hypothetical protein MkanA1_1369... 236 1e-60
gi|118468872|ref|YP_887968.1| TrkA domain-containing protein [My... 230 4e-59
gi|134101701|ref|YP_001107362.1| TrkA-C [Saccharopolyspora eryth... 209 8e-53
gi|258652833|ref|YP_003201989.1| TrkA-C domain-containing protei... 195 2e-48
gi|258650662|ref|YP_003199818.1| TrkA-C domain-containing protei... 175 2e-42
gi|284991248|ref|YP_003409802.1| TrkA-C domain-containing protei... 169 1e-40
gi|291300140|ref|YP_003511418.1| TrkA-C domain-containing protei... 153 1e-35
gi|158314057|ref|YP_001506565.1| TrkA domain-containing protein ... 152 1e-35
gi|86740597|ref|YP_480997.1| TrkA-like protein [Frankia sp. CcI3... 150 5e-35
gi|269124359|ref|YP_003297729.1| TrkA-C domain-containing protei... 147 4e-34
gi|152964885|ref|YP_001360669.1| TrkA-C domain-containing protei... 142 1e-32
gi|288923690|ref|ZP_06417791.1| TrkA-C domain protein [Frankia s... 140 5e-32
gi|271965345|ref|YP_003339541.1| regulatory ligand-binding prote... 140 6e-32
gi|312197306|ref|YP_004017367.1| TrkA-C domain protein [Frankia ... 137 6e-31
gi|288917340|ref|ZP_06411707.1| TrkA-C domain protein [Frankia s... 135 2e-30
gi|312198616|ref|YP_004018677.1| TrkA-C domain protein [Frankia ... 134 3e-30
gi|336177758|ref|YP_004583133.1| TrkA-C domain-containing protei... 134 3e-30
gi|158316422|ref|YP_001508930.1| TrkA domain-containing protein ... 132 1e-29
gi|331694698|ref|YP_004330937.1| TrkA-C domain-containing protei... 132 2e-29
gi|302864669|ref|YP_003833306.1| TrkA-C domain-containing protei... 130 7e-29
gi|226306300|ref|YP_002766260.1| hypothetical protein RER_28130 ... 129 2e-28
gi|229491298|ref|ZP_04385124.1| TrkA-C domain protein [Rhodococc... 129 2e-28
gi|296269727|ref|YP_003652359.1| TrkA-C domain-containing protei... 129 2e-28
gi|302528002|ref|ZP_07280344.1| TrkA-C domain-containing protein... 128 2e-28
gi|111023779|ref|YP_706751.1| hypothetical protein RHA1_ro06821 ... 127 5e-28
gi|94985259|ref|YP_604623.1| TrkA-C [Deinococcus geothermalis DS... 127 6e-28
gi|116672417|ref|YP_833350.1| TrkA domain-containing protein [Ar... 126 8e-28
gi|238062032|ref|ZP_04606741.1| TrkA-C domain-containing protein... 126 1e-27
gi|325965051|ref|YP_004242957.1| regulatory ligand binding prote... 125 2e-27
gi|159035792|ref|YP_001535045.1| TrkA domain-containing protein ... 125 2e-27
gi|226366215|ref|YP_002783998.1| hypothetical protein ROP_68060 ... 124 4e-27
gi|119961077|ref|YP_949370.1| TrkA domain-containing protein [Ar... 124 5e-27
gi|145592686|ref|YP_001156983.1| TrkA domain-containing protein ... 124 6e-27
gi|134101739|ref|YP_001107400.1| TrkA domain-containing protein ... 124 6e-27
gi|226356301|ref|YP_002786041.1| TrkA-C domain-containing protei... 123 1e-26
gi|315271283|gb|ACO46287.2| putative TrkA-C domain protein [Dein... 122 1e-26
gi|340529426|gb|AEK44631.1| TrkA domain-containing protein [Amyc... 122 2e-26
gi|220914397|ref|YP_002489706.1| TrkA-C domain-containing protei... 121 4e-26
gi|291003089|ref|ZP_06561062.1| TrkA domain-containing protein [... 120 1e-25
gi|300787854|ref|YP_003768145.1| TrkA domain-containing protein ... 119 1e-25
>gi|15610373|ref|NP_217754.1| hypothetical protein Rv3237c [Mycobacterium tuberculosis H37Rv]
gi|15842826|ref|NP_337863.1| hypothetical protein MT3334 [Mycobacterium tuberculosis CDC1551]
gi|31794417|ref|NP_856910.1| hypothetical protein Mb3265c [Mycobacterium bovis AF2122/97]
73 more sequence titles
Length=160
Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE
Sbjct 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV
Sbjct 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG
Sbjct 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
>gi|289575957|ref|ZP_06456184.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289540388|gb|EFD44966.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=160
Score = 303 bits (777), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 159/160 (99%), Positives = 159/160 (99%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE
Sbjct 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
AVAQILGAPRIAERFTELTREVP LKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV
Sbjct 61 AVAQILGAPRIAERFTELTREVPWLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG
Sbjct 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
>gi|306969333|ref|ZP_07481994.1| hypothetical protein TMIG_02754 [Mycobacterium tuberculosis SUMu009]
gi|308353185|gb|EFP42036.1| hypothetical protein TMIG_02754 [Mycobacterium tuberculosis SUMu009]
gi|323718106|gb|EGB27288.1| hypothetical protein TMMG_02385 [Mycobacterium tuberculosis CDC1551A]
Length=150
Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 149/150 (99%), Positives = 150/150 (100%), Gaps = 0/150 (0%)
Query 11 VGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAVAQILGAPR 70
+GLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAVAQILGAPR
Sbjct 1 MGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAVAQILGAPR 60
Query 71 IAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRDEDVLASPG 130
IAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRDEDVLASPG
Sbjct 61 IAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRDEDVLASPG 120
Query 131 PTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
PTDVLRAGDVLIVIGTEDGIAGVEQIVEKG
Sbjct 121 PTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 150
>gi|41409448|ref|NP_962284.1| hypothetical protein MAP3350c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118465661|ref|YP_883344.1| TrkA domain-containing protein [Mycobacterium avium 104]
gi|254776636|ref|ZP_05218152.1| TrkA domain-containing protein [Mycobacterium avium subsp. avium
ATCC 25291]
gi|41398279|gb|AAS05900.1| hypothetical protein MAP_3350c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118166948|gb|ABK67845.1| TrkA domain protein [Mycobacterium avium 104]
gi|336459555|gb|EGO38491.1| putative regulatory ligand binding protein, C-terminal domain
of K+ channels like protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=160
Score = 261 bits (668), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/160 (82%), Positives = 149/160 (94%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDVKEVLLPGVGLRYEFT ++GDR+GI+ARRSG FDVV+Y R+DPDEARPVL L++EEAE
Sbjct 1 MDVKEVLLPGVGLRYEFTDHKGDRVGIIARRSGDFDVVVYAREDPDEARPVLHLSNEEAE 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
AVAQILGAPRIAERFTEL +EVPGL+ GQ+HI AGS FVD PLGDTRARTRTGASIVAIV
Sbjct 61 AVAQILGAPRIAERFTELAKEVPGLETGQVHILAGSPFVDHPLGDTRARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RD++VLASPGP+++L A DVLIVIGTEDGIAGVE+I++KG
Sbjct 121 RDDEVLASPGPSEMLHARDVLIVIGTEDGIAGVEKIIDKG 160
>gi|342861437|ref|ZP_08718084.1| TrkA domain-containing protein [Mycobacterium colombiense CECT
3035]
gi|342130926|gb|EGT84215.1| TrkA domain-containing protein [Mycobacterium colombiense CECT
3035]
Length=160
Score = 259 bits (662), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 129/160 (81%), Positives = 146/160 (92%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDVKEVLLPGVGLRYEFT ++GDRIGI+ARRSG FDVV+Y R+DPDEARP+L L+D+EAE
Sbjct 1 MDVKEVLLPGVGLRYEFTDHKGDRIGIIARRSGDFDVVVYAREDPDEARPLLHLSDQEAE 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
AVAQILGAPRIAERFTEL RE+PGL+ GQ+HI AGS FVD PLGDTRARTRTGASIVAIV
Sbjct 61 AVAQILGAPRIAERFTELAREIPGLETGQVHILAGSPFVDHPLGDTRARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R+E VLASPGP ++L DVLIVIGTEDGIAGVE+I++KG
Sbjct 121 RNEQVLASPGPAEMLHVEDVLIVIGTEDGIAGVEKIIDKG 160
>gi|296168973|ref|ZP_06850640.1| TrkA-C family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896359|gb|EFG76014.1| TrkA-C family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=160
Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/160 (81%), Positives = 144/160 (90%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDVKEVLLPGVGLRYEF ++GDRIGI+ARRSG FDVV Y R+DPDEARP+L L+DEEAE
Sbjct 1 MDVKEVLLPGVGLRYEFIDHKGDRIGIIARRSGEFDVVRYAREDPDEARPILHLSDEEAE 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
AVAQILGAPRIAERFTEL RE+PGL+ GQ+HI A S FVD PLGDT ARTRTGASIVAIV
Sbjct 61 AVAQILGAPRIAERFTELAREIPGLETGQVHILASSPFVDHPLGDTHARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R+E+VLASPGP ++L A DVLIVIGTEDGIAGVEQI++KG
Sbjct 121 RNEEVLASPGPAELLHAQDVLIVIGTEDGIAGVEQIIDKG 160
>gi|15827341|ref|NP_301604.1| hypothetical protein ML0781 [Mycobacterium leprae TN]
gi|221229819|ref|YP_002503235.1| hypothetical protein MLBr_00781 [Mycobacterium leprae Br4923]
gi|13092890|emb|CAC30290.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932926|emb|CAR70875.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=160
Score = 248 bits (632), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/160 (81%), Positives = 141/160 (89%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDVKEVLLPGVGLRYEFTS +GDRIGI+ARRSG FDVV+Y RDDPD A+PV LTD+EAE
Sbjct 1 MDVKEVLLPGVGLRYEFTSRKGDRIGIIARRSGDFDVVVYARDDPDWAQPVFCLTDDEAE 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
AVAQILGAPRIAERFTEL EVPGL+ Q+ I SLFVDRPLGDT ARTRTGASIVAIV
Sbjct 61 AVAQILGAPRIAERFTELASEVPGLETRQVRIAPESLFVDRPLGDTHARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RDEDV+ SPGP + LRA DVLIVIGTE+GIAGVEQI++KG
Sbjct 121 RDEDVVVSPGPAEPLRARDVLIVIGTEEGIAGVEQIIDKG 160
>gi|108799829|ref|YP_640026.1| TrkA-C [Mycobacterium sp. MCS]
gi|119868939|ref|YP_938891.1| TrkA domain-containing protein [Mycobacterium sp. KMS]
gi|126435472|ref|YP_001071163.1| TrkA domain-containing protein [Mycobacterium sp. JLS]
gi|108770248|gb|ABG08970.1| potassium/proton antiporter regulatory subunit, CPA2 family [Mycobacterium
sp. MCS]
gi|119695028|gb|ABL92101.1| potassium/proton antiporter regulatory subunit, CPA2 family [Mycobacterium
sp. KMS]
gi|126235272|gb|ABN98672.1| potassium/proton antiporter regulatory subunit, CPA2 family [Mycobacterium
sp. JLS]
Length=177
Score = 247 bits (630), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 125/160 (79%), Positives = 146/160 (92%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDVKEVLLPGVGLR+EF + GDRIG+VARR+G F+VV+Y ++DPD+A+ V RLTDEEAE
Sbjct 4 MDVKEVLLPGVGLRFEFDNRDGDRIGVVARRTGDFEVVVYPKEDPDQAQQVFRLTDEEAE 63
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+AQILGAPRIAERF +LTREVPGL AGQ+ +RAGS FVDRPLGDTRARTRTGASIVAIV
Sbjct 64 ALAQILGAPRIAERFADLTREVPGLSAGQVSVRAGSPFVDRPLGDTRARTRTGASIVAIV 123
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RDE+VLASPGP+D+LRAGDVL+VIGT +G+AGVE IV +G
Sbjct 124 RDEEVLASPGPSDLLRAGDVLVVIGTHEGLAGVEVIVSQG 163
>gi|183981330|ref|YP_001849621.1| hypothetical protein MMAR_1308 [Mycobacterium marinum M]
gi|183174656|gb|ACC39766.1| conserved protein [Mycobacterium marinum M]
Length=160
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/160 (77%), Positives = 141/160 (89%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDVKEVLLPGVGLRYEFTS +G+RIGI+ARR+G F+VV+Y +DPD ARPV LTDEEA+
Sbjct 1 MDVKEVLLPGVGLRYEFTSQKGERIGIIARRTGDFEVVVYAANDPDAARPVFCLTDEEAD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+AQILGAPRIAERFTELTREVPGL+AG I I S FVDRPLG+T ARTRTGASIVAIV
Sbjct 61 ALAQILGAPRIAERFTELTREVPGLEAGHIIIAPQSPFVDRPLGETHARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R ++V+ASP P ++LR DVLIVIGTE+GIAGVEQIV+KG
Sbjct 121 RGQEVVASPNPAELLRERDVLIVIGTEEGIAGVEQIVDKG 160
>gi|118618051|ref|YP_906383.1| hypothetical protein MUL_2573 [Mycobacterium ulcerans Agy99]
gi|118570161|gb|ABL04912.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=160
Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 121/160 (76%), Positives = 141/160 (89%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDVKEVLLPGVGLRYEFTS +G+RIGI+ARR+G F+VV+Y +DPD ARPV LTDEEA+
Sbjct 1 MDVKEVLLPGVGLRYEFTSQKGERIGIIARRTGDFEVVVYAANDPDAARPVFCLTDEEAD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+AQILGAPRIAERFTELTREVPGL+AG I + S FVDRPLG+T ARTRTGASIVAIV
Sbjct 61 ALAQILGAPRIAERFTELTREVPGLEAGHIIVAPQSPFVDRPLGETHARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R ++V+ASP P ++LR DVLIVIGTE+GIAG+EQIV+KG
Sbjct 121 RGQEVVASPNPAELLRERDVLIVIGTEEGIAGIEQIVDKG 160
>gi|240170360|ref|ZP_04749019.1| hypothetical protein MkanA1_13690 [Mycobacterium kansasii ATCC
12478]
Length=160
Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/160 (77%), Positives = 137/160 (86%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDVKEVLLPGVGLRYEF S++G+RIGI+ARR+G FD+VLY +DPDE RPV RL EEA+
Sbjct 1 MDVKEVLLPGVGLRYEFISHKGERIGIIARRTGEFDIVLYTAEDPDECRPVFRLNGEEAD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
VA ILGAPRIAERFTELTREVPGL+AGQI I S FV RPLG+TRARTRTGASIVAIV
Sbjct 61 TVAAILGAPRIAERFTELTREVPGLEAGQISIEPESPFVGRPLGNTRARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R +DV+ASPGP + LRA DVLIVIGTE+GI GV QIV +G
Sbjct 121 RGDDVVASPGPAETLRARDVLIVIGTEEGIVGVRQIVNQG 160
>gi|118468872|ref|YP_887968.1| TrkA domain-containing protein [Mycobacterium smegmatis str.
MC2 155]
gi|118170159|gb|ABK71055.1| TrkA domain protein [Mycobacterium smegmatis str. MC2 155]
Length=168
Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/160 (74%), Positives = 141/160 (89%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDV+EVLLPGVGLR+EF ++ GDRIG++A R+G F+VV+Y +DPD+A+ V RLTDEEA+
Sbjct 1 MDVREVLLPGVGLRFEFENHDGDRIGVIALRTGDFEVVVYPHEDPDQAQRVFRLTDEEAD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+AQILGAPRIAE+F ELT EVPGL AGQ+ IR GS FVDRPLGDT+ARTRTGASIVAIV
Sbjct 61 ALAQILGAPRIAEKFAELTSEVPGLDAGQVTIRPGSPFVDRPLGDTKARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RD++VLASPGP+++LRAGDVL+VIGT GIAGV +IV G
Sbjct 121 RDDEVLASPGPSELLRAGDVLVVIGTVAGIAGVGEIVANG 160
>gi|134101701|ref|YP_001107362.1| TrkA-C [Saccharopolyspora erythraea NRRL 2338]
gi|291003129|ref|ZP_06561102.1| TrkA-C [Saccharopolyspora erythraea NRRL 2338]
gi|133914324|emb|CAM04437.1| TrkA-C [Saccharopolyspora erythraea NRRL 2338]
Length=159
Score = 209 bits (533), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/157 (69%), Positives = 126/157 (81%), Gaps = 0/157 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDV EVLLPGVGLRYEF++ G RIG+VARR+G F+ V Y DDPDE R + RL EEA+
Sbjct 1 MDVTEVLLPGVGLRYEFSTEEGQRIGVVARRTGDFEFVSYPGDDPDEVRLLFRLGPEEAD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
AV +ILGAPRIAERF +LTREVPGL +GQ+ + A S F R LG+TRARTRTGASIVAIV
Sbjct 61 AVTEILGAPRIAERFADLTREVPGLNSGQVEVTASSRFAGRTLGETRARTRTGASIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIV 157
R EDV+ASPGP LRAGD+L+VIGT+ GI GVE I+
Sbjct 121 RGEDVIASPGPEQQLRAGDILVVIGTQQGITGVEHIL 157
>gi|258652833|ref|YP_003201989.1| TrkA-C domain-containing protein [Nakamurella multipartita DSM
44233]
gi|258556058|gb|ACV79000.1| TrkA-C domain protein [Nakamurella multipartita DSM 44233]
Length=154
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/152 (68%), Positives = 125/152 (83%), Gaps = 0/152 (0%)
Query 6 VLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAVAQI 65
+LLPGVGLRYEF + G R+GI+ARR GGF++V Y R DPD + + +LT EEA+AVA+I
Sbjct 1 MLLPGVGLRYEFATAAGPRVGIIARRDGGFEIVGYDRRDPDRSVTLFKLTAEEADAVAEI 60
Query 66 LGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRDEDV 125
LGAPRIAERF +LTREVPGL AGQ+ + GS + R LGDTRART TGASIVAIVR ++V
Sbjct 61 LGAPRIAERFADLTREVPGLSAGQVEVDEGSPYAGRLLGDTRARTLTGASIVAIVRGDEV 120
Query 126 LASPGPTDVLRAGDVLIVIGTEDGIAGVEQIV 157
+ASP P+DVL AGDVL+VIGT +GIAGVE+I+
Sbjct 121 IASPAPSDVLAAGDVLVVIGTPEGIAGVERIL 152
>gi|258650662|ref|YP_003199818.1| TrkA-C domain-containing protein [Nakamurella multipartita DSM
44233]
gi|258553887|gb|ACV76829.1| TrkA-C domain protein [Nakamurella multipartita DSM 44233]
Length=161
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/157 (58%), Positives = 117/157 (75%), Gaps = 0/157 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDV E LLPGVG+RYEF + G IG+++RR G DV +Y R D D ++RLT EA+
Sbjct 1 MDVTETLLPGVGIRYEFVTRSGAHIGLISRRDGRIDVGVYDRSDADVWIELVRLTPAEAD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
+A++LGAPRIAERF +LTRE+PGL A Q+ I GS F R LG+TRAR+RTGAS+VA+V
Sbjct 61 TLAELLGAPRIAERFADLTREIPGLVAAQVEIEPGSTFAGRTLGETRARSRTGASVVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIV 157
R V+A+P P+ L AGDVL+V+GTEDGIA + +I+
Sbjct 121 RSAGVVAAPTPSQPLTAGDVLVVLGTEDGIAALRRIL 157
>gi|284991248|ref|YP_003409802.1| TrkA-C domain-containing protein [Geodermatophilus obscurus DSM
43160]
gi|284064493|gb|ADB75431.1| TrkA-C domain protein [Geodermatophilus obscurus DSM 43160]
Length=161
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/155 (57%), Positives = 115/155 (75%), Gaps = 0/155 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MD++E LLPGVG+RY + G+ +G+V RR G ++ +Y R DPD AR VLRL +E +
Sbjct 1 MDLEETLLPGVGVRYRLRTSAGEVLGVVVRREGAAELSVYDRRDPDRARSVLRLEPDEVD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+A++LGAPR+ +RF +L+REVPGL++G+ I AGS F RPLGDTRART TG SIVAIV
Sbjct 61 ALAEVLGAPRLTQRFADLSREVPGLESGRFPIGAGSRFAGRPLGDTRARTLTGCSIVAIV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQ 155
RD DV+ SPGP D L GDVL+ IG+ G+ +E+
Sbjct 121 RDTDVVPSPGPADTLLPGDVLVAIGSVRGLEELER 155
>gi|291300140|ref|YP_003511418.1| TrkA-C domain-containing protein [Stackebrandtia nassauensis
DSM 44728]
gi|290569360|gb|ADD42325.1| TrkA-C domain protein [Stackebrandtia nassauensis DSM 44728]
Length=160
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/160 (51%), Positives = 107/160 (67%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDV+ LPG+GLRYEF + RG R+G+V RSG ++++Y DDPD + L+ EEA
Sbjct 1 MDVERTALPGIGLRYEFGTERGRRMGVVTHRSGRRELIVYDPDDPDSTSECVVLSGEEAN 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
+A++LG RI ER EL R+ GL + Q+ I GS F R LGDT+AR+RTGASIVA+V
Sbjct 61 VLAELLGGARIVERLAELERQADGLVSRQVRIHDGSPFDHRTLGDTQARSRTGASIVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R +V+ASP P GDV++VIGTEDG VE ++ G
Sbjct 121 RHGEVIASPRPDFRFETGDVVVVIGTEDGTNAVESLLANG 160
>gi|158314057|ref|YP_001506565.1| TrkA domain-containing protein [Frankia sp. EAN1pec]
gi|158109462|gb|ABW11659.1| TrkA-C domain protein [Frankia sp. EAN1pec]
Length=186
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/160 (49%), Positives = 111/160 (70%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
+DV+E LPG+GLR++F++ G R+G+V+R G D+V+Y +DPD +R + LT EE +
Sbjct 27 VDVEETPLPGIGLRHDFSTRSGRRLGVVSRHDGRRDLVIYDAEDPDASRESITLTPEEGD 86
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
++++LGAP I E+ +++R GL QI I AGS + +R LGDT+ARTRTGASIVA+V
Sbjct 87 VLSELLGAPHIVEKLADISRAFAGLVGEQIEITAGSPYANRILGDTQARTRTGASIVAVV 146
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RD VLASP P GDV++V+GT + A V Q++ G
Sbjct 147 RDHQVLASPRPDFQFHPGDVVVVVGTPENTAAVAQLLRAG 186
>gi|86740597|ref|YP_480997.1| TrkA-like protein [Frankia sp. CcI3]
gi|86567459|gb|ABD11268.1| potassium/proton antiporter regulatory subunit, CPA2 family [Frankia
sp. CcI3]
Length=160
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/160 (49%), Positives = 109/160 (69%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+++E LPG+GLR++F + G R+G+V+ G D+V+Y DDPD +R + LT EE +
Sbjct 1 MEIEETALPGIGLRHDFATRSGRRLGVVSHHHGRRDLVIYDADDPDASRESIALTPEEGD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
++++LGAPRI E+ +L R GL QI I GS +V R LGDT+ARTRTGASIVA+V
Sbjct 61 VLSELLGAPRIVEKLADLNRAFAGLVGEQIVILPGSPYVGRELGDTQARTRTGASIVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RD+ VLASP P AGDV++V+GT + A V ++ G
Sbjct 121 RDQQVLASPRPDFRFEAGDVVVVVGTPENTASVGMLLRNG 160
>gi|269124359|ref|YP_003297729.1| TrkA-C domain-containing protein [Thermomonospora curvata DSM
43183]
gi|268309317|gb|ACY95691.1| TrkA-C domain protein [Thermomonospora curvata DSM 43183]
Length=160
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/160 (49%), Positives = 109/160 (69%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDV+ LPG+GL++ FT+ RG +IG+V+ R+G D+ +Y ++DPD +++LT EEA
Sbjct 1 MDVERTALPGIGLQHVFTTRRGRQIGVVSHRNGQRDLAVYDKEDPDTCVVMVKLTPEEAN 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
+A++LG R+ ER EL R+V GL QI I AGS + R LG T+AR+RTGASIVA+V
Sbjct 61 VLAELLGTERVVERLAELHRQVEGLVTEQIPITAGSPYDGRTLGSTQARSRTGASIVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RD V+ SP P V AGD ++V+GT +G A V +I G
Sbjct 121 RDAQVIVSPRPDFVFAAGDKVVVVGTGEGTAAVARIFSDG 160
>gi|152964885|ref|YP_001360669.1| TrkA-C domain-containing protein [Kineococcus radiotolerans SRS30216]
gi|151359402|gb|ABS02405.1| TrkA-C domain protein [Kineococcus radiotolerans SRS30216]
Length=166
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/160 (42%), Positives = 110/160 (69%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
+D++E LPGVGLR++FT+ RG RIG+++ R G ++++Y +DDPD V+ L +EAE
Sbjct 7 VDLEETKLPGVGLRHDFTTARGRRIGVISTRGGERELLVYSQDDPDACHAVVDLDGDEAE 66
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
+A++LG PR+ ER L ++ GL I++ AGS +V + L D R+RTGAS+VA+V
Sbjct 67 VLAELLGQPRVIERLARLREQIEGLATEGIYLEAGSPYVGKTLADAAIRSRTGASVVALV 126
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R+ +V SP P+ R+GD ++V+GT++G+ ++++ G
Sbjct 127 RNGEVTPSPAPSQAFRSGDKIVVVGTQEGVRATAELLQHG 166
>gi|288923690|ref|ZP_06417791.1| TrkA-C domain protein [Frankia sp. EUN1f]
gi|288344962|gb|EFC79390.1| TrkA-C domain protein [Frankia sp. EUN1f]
Length=160
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/160 (47%), Positives = 109/160 (69%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V+E LPG+GLR++F++ G R+G+V+ SG +V+Y DPD + LT EE++
Sbjct 1 MNVEETGLPGIGLRHDFSTRAGRRVGVVSHHSGRRVLVVYDAQDPDSCAESITLTPEESD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
++++LGAP I E+ +++R GL QI I AGS + R LGDTRARTRTGASIVA+V
Sbjct 61 VLSELLGAPHIVEKLADISRAFAGLVGDQITIVAGSPYDGRLLGDTRARTRTGASIVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R++ VLASP P L+A DV++V+GT + A V ++ G
Sbjct 121 REQQVLASPRPDFRLQAEDVVVVVGTPENTAAVGDLLRSG 160
>gi|271965345|ref|YP_003339541.1| regulatory ligand-binding protein related to C-terminal domains
of K+ channels-like protein [Streptosporangium roseum DSM
43021]
gi|270508520|gb|ACZ86798.1| Putative regulatory ligand-binding protein related to C-terminal
domains of K+ channels-like protein [Streptosporangium roseum
DSM 43021]
Length=160
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 110/160 (69%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V++ LPG+GLR+EFT+ G RIGIV+ R+G D+V+Y DPD A ++L DEEA+
Sbjct 1 MEVEQTALPGIGLRHEFTTRSGRRIGIVSHRTGRRDLVIYDPTDPDRACETVKLNDEEAD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+ ++LGAPRI +R L REV GL + Q+ I G+ + RP+GD R RTRTGAS+VA+V
Sbjct 61 ALCELLGAPRIVQRLNALHREVEGLVSLQLPILPGTPYDGRPMGDARVRTRTGASVVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R V ASPGP V GDV++V+G+ + A V I+ G
Sbjct 121 RAGQVFASPGPDFVFADGDVVVVVGSPESTASVADILTNG 160
>gi|312197306|ref|YP_004017367.1| TrkA-C domain protein [Frankia sp. EuI1c]
gi|311228642|gb|ADP81497.1| TrkA-C domain protein [Frankia sp. EuI1c]
Length=165
Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/160 (45%), Positives = 104/160 (65%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
++++E LPG+GLR+EFT+ G R+G+V+ G ++V+Y +DPD + LT EE +
Sbjct 6 VEIEETALPGIGLRHEFTTRAGRRVGVVSHHKGRRELVIYDAEDPDAVADAVALTAEEGD 65
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
++++LGAP I E+ L + GL +I I A S + RPLGDT+ARTRTGASIVA+V
Sbjct 66 VLSELLGAPHIVEKLANLNKVFAGLVGERIRISADSPYAGRPLGDTQARTRTGASIVAVV 125
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RD++VLASP P DV++V+GT + A V + G
Sbjct 126 RDQEVLASPRPDFRFAPDDVVVVVGTPENTAAVADLFRTG 165
>gi|288917340|ref|ZP_06411707.1| TrkA-C domain protein [Frankia sp. EUN1f]
gi|288351205|gb|EFC85415.1| TrkA-C domain protein [Frankia sp. EUN1f]
Length=160
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/131 (52%), Positives = 94/131 (72%), Gaps = 0/131 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDV+E LPG+GLR++F++ G R+G+V R G D+V+Y +DPD +R + LT EE +
Sbjct 1 MDVEETPLPGIGLRHDFSTRSGRRLGVVTRHDGRRDLVIYDAEDPDASRESITLTAEEGD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
++++LGAP I E+ +++R GL QI I AGS + +R LGDT+ARTRTGASIVA+V
Sbjct 61 VLSELLGAPHIVEKLADISRAFAGLVGDQIQILAGSPYANRLLGDTQARTRTGASIVAVV 120
Query 121 RDEDVLASPGP 131
RD VLASP P
Sbjct 121 RDHQVLASPRP 131
>gi|312198616|ref|YP_004018677.1| TrkA-C domain protein [Frankia sp. EuI1c]
gi|311229952|gb|ADP82807.1| TrkA-C domain protein [Frankia sp. EuI1c]
Length=160
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/160 (45%), Positives = 102/160 (64%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M ++E LPG+GLR+EFT+ G R+G+V+ G ++V+Y +DPD + LT EE +
Sbjct 1 MQIEETALPGIGLRHEFTTRAGRRVGVVSHHKGRRELVIYDAEDPDAVADAVALTAEEGD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
++++LGAP I E+ L + GL +I I A S + R LGDT+ARTRTGASIVA+V
Sbjct 61 VLSELLGAPHIVEKLANLNKVFAGLVGERIRISADSPYAGRLLGDTQARTRTGASIVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RD++VLASP P DV++V+GT + A V + G
Sbjct 121 RDQEVLASPRPDFRFAPDDVVVVVGTPENTAAVADLFRTG 160
>gi|336177758|ref|YP_004583133.1| TrkA-C domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334858738|gb|AEH09212.1| TrkA-C domain protein [Frankia symbiont of Datisca glomerata]
Length=160
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/160 (47%), Positives = 106/160 (67%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDV+E +LPG+GLR++F + G R+G+V+ G ++V+Y DD D + LT EE++
Sbjct 1 MDVEETMLPGIGLRHDFRTRSGRRVGVVSHHGGRRELVIYDTDDMDTCSESIPLTAEESD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+A++LGAP I ER L + G+ QI I GS + +PLG+T ARTRTGASIVA+V
Sbjct 61 ALAELLGAPHIVERLNNLGKAFAGIVGEQIKITPGSPYDGQPLGETHARTRTGASIVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RD+ V+ASP P AGDV++V+GT + A V ++ G
Sbjct 121 RDQQVIASPRPDFGFVAGDVVVVVGTPENTAAVAELFRVG 160
>gi|158316422|ref|YP_001508930.1| TrkA domain-containing protein [Frankia sp. EAN1pec]
gi|158111827|gb|ABW14024.1| TrkA-C domain protein [Frankia sp. EAN1pec]
Length=160
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/160 (45%), Positives = 104/160 (65%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M V E LPG+GLR++F++ G R+G+V+ SG +V+Y DPD + LT EE++
Sbjct 1 MKVDETALPGIGLRHDFSTRAGRRVGVVSHHSGRRVLVVYDEHDPDTCVESIPLTVEESD 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
++++LGAP I + +L++ GL QI I GS + R LGDT+ARTRTGASIVA+V
Sbjct 61 VLSELLGAPHIVGKLADLSQAFAGLVGEQITILPGSPYAGRLLGDTQARTRTGASIVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
RD+ VLASP P +A DV++V+GT + V +++ G
Sbjct 121 RDQQVLASPRPDFRFQAEDVVVVVGTPENTVAVGELLRSG 160
>gi|331694698|ref|YP_004330937.1| TrkA-C domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
gi|326949387|gb|AEA23084.1| TrkA-C domain protein [Pseudonocardia dioxanivorans CB1190]
Length=160
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/160 (45%), Positives = 102/160 (64%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V+ LPG+G+R +F G RIG+V R G ++++ DDPD A L LT EEA
Sbjct 1 MNVEVTPLPGIGVRKDFAIRAGRRIGVVTHRDGKIELIVSKSDDPDAALASLPLTMEEAS 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+A +LGAP++ + TE R++PG+ Q+ I AG F R LGDT RTRTG S+VA++
Sbjct 61 ALANLLGAPQLVAQLTEEHRDLPGIHTRQLPIGAGCPFDGRTLGDTALRTRTGVSVVAVM 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R V ASP P L AGD+L+ +GT +G+ +I+++G
Sbjct 121 RAGQVHASPTPDFTLTAGDLLVTVGTAEGLDNAVKILKRG 160
>gi|302864669|ref|YP_003833306.1| TrkA-C domain-containing protein [Micromonospora aurantiaca ATCC
27029]
gi|315500962|ref|YP_004079849.1| trka-c domain-containing protein [Micromonospora sp. L5]
gi|302567528|gb|ADL43730.1| TrkA-C domain protein [Micromonospora aurantiaca ATCC 27029]
gi|315407581|gb|ADU05698.1| TrkA-C domain protein [Micromonospora sp. L5]
Length=166
Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/157 (46%), Positives = 103/157 (66%), Gaps = 0/157 (0%)
Query 3 VKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAV 62
V++ LPG+G+R++ + G R+G+V+ R+G D+VLY DDPD + + LTD+EAEA+
Sbjct 5 VEQTALPGIGVRHDLMTESGRRLGVVSHRNGRRDLVLYDPDDPDSCQHDIPLTDDEAEAL 64
Query 63 AQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRD 122
A ILGA + + + L + GL QI + AGS +V R L DT+ARTRT ASIVA++R
Sbjct 65 ADILGASLMLGQLSGLREQAAGLLTEQIAMPAGSKYVGRRLADTKARTRTSASIVAVLRQ 124
Query 123 EDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEK 159
V SP PT AGDV++V+GT G+ GV I+ +
Sbjct 125 GAVNVSPDPTFRFEAGDVVVVVGTRQGLDGVTAILAE 161
>gi|226306300|ref|YP_002766260.1| hypothetical protein RER_28130 [Rhodococcus erythropolis PR4]
gi|226185417|dbj|BAH33521.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=181
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/160 (42%), Positives = 98/160 (62%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V+ LPG+G R +F G R+G+V R G D+++ DDPD L LT EEA
Sbjct 22 MNVEVTPLPGIGTRKDFVLSSGRRVGVVTHRDGHTDLIVSKADDPDACAASLPLTTEEAA 81
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A++ +LGAP++ + E R++PG++ Q++I+ GS + + LGDT RTRTG SIVA++
Sbjct 82 ALSNLLGAPQLVAQLEEEHRDLPGIRTKQLYIKDGSRYDGQTLGDTGMRTRTGVSIVAVM 141
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R V SP P GD+L+ +GT DG+A +I+ G
Sbjct 142 RAGQVSPSPNPDFTFTGGDLLVAVGTPDGLAAAAKILANG 181
>gi|229491298|ref|ZP_04385124.1| TrkA-C domain protein [Rhodococcus erythropolis SK121]
gi|229321837|gb|EEN87632.1| TrkA-C domain protein [Rhodococcus erythropolis SK121]
Length=171
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/160 (42%), Positives = 98/160 (62%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V+ LPG+G R +F G R+G+V R G D+++ DDPD L LT EEA
Sbjct 12 MNVEVTPLPGIGTRKDFVLSSGRRVGVVTHRDGHTDLIVSKADDPDACAASLPLTTEEAA 71
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A++ +LGAP++ + E R++PG++ Q++I+ GS + + LGDT RTRTG SIVA++
Sbjct 72 ALSNLLGAPQLVAQLEEEHRDLPGIRTKQLYIKDGSRYDGQTLGDTGMRTRTGVSIVAVM 131
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R V SP P GD+L+ +GT DG+A +I+ G
Sbjct 132 RAGQVSPSPNPDFTFTGGDLLVAVGTPDGLAAAAKILANG 171
>gi|296269727|ref|YP_003652359.1| TrkA-C domain-containing protein [Thermobispora bispora DSM 43833]
gi|296092514|gb|ADG88466.1| TrkA-C domain protein [Thermobispora bispora DSM 43833]
Length=160
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/160 (48%), Positives = 111/160 (70%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MD+ LPG+GL++ T+ RG +IG+++ +G D+V++ +DDPD + LT EEA
Sbjct 1 MDLDRTGLPGIGLQHVLTTERGRQIGVISHHTGRRDLVIFDKDDPDTTLATVVLTPEEAN 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
+A++LG RI ER EL R+V GL +I I AGS + R LGDTR R+RTGASIVA+V
Sbjct 61 VLAELLGTGRIVERLNELHRQVEGLVTRKIPIEAGSPYDGRSLGDTRTRSRTGASIVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R +V+ASP P +L+AGDV++V+GTE+G + +I++ G
Sbjct 121 RRHEVIASPRPDFLLQAGDVVVVVGTEEGTSAAAEILQTG 160
>gi|302528002|ref|ZP_07280344.1| TrkA-C domain-containing protein [Streptomyces sp. AA4]
gi|302436897|gb|EFL08713.1| TrkA-C domain-containing protein [Streptomyces sp. AA4]
Length=160
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/160 (42%), Positives = 100/160 (63%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V+ LPG+G+R +F + G RIG+V +R G ++++ DDPD L LT +EA
Sbjct 1 MNVEVTPLPGIGVRKDFATRAGRRIGVVTQRDGKIELIVSKSDDPDACLASLPLTADEAG 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A++ +LGAP++ + E RE+PG+ Q+ I A S F R LGDT RTRT SIVA++
Sbjct 61 ALSNLLGAPQLVAQLNEEHRELPGINTKQLPITADSPFDGRSLGDTAMRTRTSVSIVAVM 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R V SP P + AGD+L+V+GT +G+ +I++ G
Sbjct 121 RAGQVHPSPTPDFLFTAGDLLVVVGTSEGLEAAAKILKHG 160
>gi|111023779|ref|YP_706751.1| hypothetical protein RHA1_ro06821 [Rhodococcus jostii RHA1]
gi|110823309|gb|ABG98593.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=160
Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/160 (41%), Positives = 100/160 (63%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V+ LPG+G+R +F G RIG++ R G D+++ DDPD + LT EEA
Sbjct 1 MNVEVTPLPGIGVRKDFELAAGRRIGVITHRDGRTDLIVSKADDPDACAASVPLTTEEAA 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
++ +LGAP++ + E R++PG++ Q++I+ S F RPLGDT RTRTG SIVA++
Sbjct 61 VLSNLLGAPQLVAQLEEEHRDLPGIRTKQLYIKEDSRFDGRPLGDTAMRTRTGVSIVAVM 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R V SP P +L +GD+L+ +GT DG+ +++ G
Sbjct 121 RAGQVYPSPKPDFLLTSGDLLVAVGTTDGLDASAKLLANG 160
>gi|94985259|ref|YP_604623.1| TrkA-C [Deinococcus geothermalis DSM 11300]
gi|94555540|gb|ABF45454.1| potassium/proton antiporter regulatory subunit, CPA2 family [Deinococcus
geothermalis DSM 11300]
Length=195
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/158 (42%), Positives = 99/158 (63%), Gaps = 0/158 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
+ ++E LPGVG+R++F G R+G++ R G ++ + RDDPD + L+DEEAE
Sbjct 33 IKLEETPLPGVGVRHDFDGRFGKRVGVITHRDGRREIFVSRRDDPDACAQSIVLSDEEAE 92
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
AVA +LG I ++LT+++ GL + + S + +PLGDT RTRTGASIVAI+
Sbjct 93 AVADLLGGSTITRHISKLTQDIEGLAIDWVKVPGVSPYAGKPLGDTMMRTRTGASIVAIM 152
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVE 158
RD + +PGP L AGD ++V+GT DG+ +++
Sbjct 153 RDGHAIPAPGPEFPLYAGDTVVVVGTPDGVVKAAKLLN 190
>gi|116672417|ref|YP_833350.1| TrkA domain-containing protein [Arthrobacter sp. FB24]
gi|116612526|gb|ABK05250.1| potassium/proton antiporter regulatory subunit, CPA2 family [Arthrobacter
sp. FB24]
Length=160
Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/160 (42%), Positives = 99/160 (62%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V E LPG+G R +F + G RIG+V R G ++++ DDPD + + LT EEA
Sbjct 1 MNVDETDLPGLGRRKDFMTASGRRIGVVEYREGQTELIVSTWDDPDTCQASIPLTAEEAA 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+ +LG R+A + +E RE+PG+ Q I S F ++P+G RTR+G SIVAI+
Sbjct 61 ALGNLLGGQRLAMQLSEEHREIPGIVTRQFSIGGDSPFHNQPMGKACIRTRSGVSIVAIM 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R+ +VL SPGP VL GD+L+ +GT++G+ I+ G
Sbjct 121 REGEVLPSPGPDVVLHPGDLLVAVGTQEGLDTAADILRNG 160
>gi|238062032|ref|ZP_04606741.1| TrkA-C domain-containing protein [Micromonospora sp. ATCC 39149]
gi|237883843|gb|EEP72671.1| TrkA-C domain-containing protein [Micromonospora sp. ATCC 39149]
Length=166
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/155 (48%), Positives = 104/155 (68%), Gaps = 0/155 (0%)
Query 3 VKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAV 62
V++ LPG+G+R++ + G R+G+V+ R+G D+VLY DDPD + + LTD+EAEA+
Sbjct 5 VEQTALPGIGMRHDLLTESGRRLGVVSHRNGRRDLVLYDPDDPDSCQHDIPLTDDEAEAL 64
Query 63 AQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRD 122
A ILGA + + + L + GL QI I A S +V+R LGDTRARTRT ASIVA++R
Sbjct 65 ADILGASLMLGQLSGLREQAAGLLTEQIAIPASSKYVNRRLGDTRARTRTSASIVAVLRR 124
Query 123 EDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIV 157
+V+ SP P AGDV++V+GT G+ GV I+
Sbjct 125 GEVIVSPDPAFRFDAGDVVVVVGTRKGLDGVTAIL 159
>gi|325965051|ref|YP_004242957.1| regulatory ligand binding protein, C-terminal domain of K+ channels
like protein [Arthrobacter phenanthrenivorans Sphe3]
gi|323471138|gb|ADX74823.1| putative regulatory ligand binding protein, C-terminal domain
of K+ channels like protein [Arthrobacter phenanthrenivorans
Sphe3]
Length=160
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/160 (41%), Positives = 96/160 (60%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V E LPG+G R +F + G RIG+V R G ++++ DDPD + + LT EEA
Sbjct 1 MNVDETNLPGLGRRKDFMTASGRRIGVVELREGQTELIVSAWDDPDTCQASIPLTTEEAA 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
+ +LG +A + TE ++VPG+ Q I S F ++P+G RTR G SIVAI+
Sbjct 61 TLGNLLGGQHLAMKLTEEHKDVPGIVTRQFSIAPDSPFQNQPMGKACIRTRCGVSIVAIM 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R+ +VL SPGP VL GD+L+ +GT++G+ I+ G
Sbjct 121 REGEVLPSPGPDVVLHTGDLLVAVGTQEGLDAAADILRHG 160
>gi|159035792|ref|YP_001535045.1| TrkA domain-containing protein [Salinispora arenicola CNS-205]
gi|157914627|gb|ABV96054.1| TrkA-C domain protein [Salinispora arenicola CNS-205]
Length=166
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/158 (47%), Positives = 107/158 (68%), Gaps = 0/158 (0%)
Query 3 VKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAV 62
V++ LPG+G+R++ + G R+G+V+ R+G D+VLY DDPD + + LTD+EAEA+
Sbjct 5 VEQTALPGIGVRHDLMTESGRRLGVVSHRNGRRDLVLYDPDDPDACQADIPLTDDEAEAL 64
Query 63 AQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRD 122
A ILGA + + + L + GL Q+ I AGS +V R LGDT+ARTRTGASIVA++R
Sbjct 65 ADILGASLLLGQLSGLREQAAGLLTEQVAITAGSSYVGRKLGDTKARTRTGASIVAVLRQ 124
Query 123 EDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
+V+ SP P+ AGDV++V+GT G+ GV I+ G
Sbjct 125 GEVIVSPDPSFRFVAGDVVVVVGTRQGLDGVTAILADG 162
>gi|226366215|ref|YP_002783998.1| hypothetical protein ROP_68060 [Rhodococcus opacus B4]
gi|226244705|dbj|BAH55053.1| hypothetical protein [Rhodococcus opacus B4]
Length=160
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 99/160 (62%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V+ LPG+G+R +F G RIG++ R G D+++ DDPD + LT EEA
Sbjct 1 MNVEVTPLPGIGVRKDFELAAGRRIGVITHRDGRTDLIVSKADDPDACAASVPLTTEEAA 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
++ +LGAP++ + E R++PG++ Q++I+ S F R LGDT RTRTG SIVA++
Sbjct 61 VLSNLLGAPQLVAQLEEEHRDLPGIRTKQLYIKEDSRFDGRSLGDTAMRTRTGVSIVAVM 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R V SP P +L +GD+L+ +GT DG+ +++ G
Sbjct 121 RAGQVNPSPKPDFLLTSGDLLVAVGTTDGLDAAAKLLANG 160
>gi|119961077|ref|YP_949370.1| TrkA domain-containing protein [Arthrobacter aurescens TC1]
gi|119947936|gb|ABM06847.1| putative TrkA-C domain protein [Arthrobacter aurescens TC1]
Length=160
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V E LPG+G+R +F + G RIG+V R G ++ + DDPD + + LT +EA
Sbjct 1 MNVDETELPGLGIRKDFVTASGRRIGVVELREGETELFVSTWDDPDTCQASIPLTADEAS 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
+ +L IA R E RE+PG+ Q I S FV++P+G + RTR+G SIVAI+
Sbjct 61 TLGNLLSGQHIAMRLAEEHREIPGIVTRQFSITPDSPFVNQPMGKAQIRTRSGVSIVAIM 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R+ +V+ SP P VL GD+L+ +GT++G+ I+ G
Sbjct 121 REGEVVPSPAPDVVLHTGDLLVAVGTQEGLDSAADILRNG 160
>gi|145592686|ref|YP_001156983.1| TrkA domain-containing protein [Salinispora tropica CNB-440]
gi|145302023|gb|ABP52605.1| TrkA-C domain protein [Salinispora tropica CNB-440]
Length=196
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/158 (47%), Positives = 106/158 (68%), Gaps = 0/158 (0%)
Query 3 VKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAV 62
V++ LPG+G+R++ + G R+G+V+ R+G D+VLY DDPD + + LTD+EAEA+
Sbjct 35 VEQTALPGIGVRHDLMTESGRRLGVVSHRNGRRDLVLYDPDDPDACQADIPLTDDEAEAL 94
Query 63 AQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRD 122
A ILGA + + + L + GL Q+ I A S +V R LGDT+ARTRTGASIVA++R
Sbjct 95 ADILGASLLLGQLSGLREQAAGLLTEQVAIPAASAYVGRKLGDTKARTRTGASIVAVLRH 154
Query 123 EDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
+V+ SP P+ AGDV++V+GT G+ GV I+ G
Sbjct 155 GEVIVSPEPSFRFAAGDVVVVVGTRQGLDGVTAILADG 192
>gi|134101739|ref|YP_001107400.1| TrkA domain-containing protein [Saccharopolyspora erythraea NRRL
2338]
gi|133914362|emb|CAM04475.1| TrkA-C domain protein [Saccharopolyspora erythraea NRRL 2338]
Length=160
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/160 (42%), Positives = 96/160 (60%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
MDV LPG+G + +FT+ G RIG+++ R G F++++ DPD+ + LT EE
Sbjct 1 MDVTVTPLPGLGTQQDFTTRSGHRIGVISYRDGRFELIVCNHGDPDKVATSVDLTVEETS 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+A +LGAP + + TE REV G+ Q+ + GS + R LGDT RTRT SIVA+V
Sbjct 61 ALANLLGAPHLVAQLTEQQREVAGITTRQLPVAPGSPYDGRALGDTEMRTRTSTSIVAVV 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R V SP P GD+++ +GT DG+ +I++KG
Sbjct 121 RGGTVHPSPRPDFEFAGGDLVVAVGTADGLRAATEILDKG 160
>gi|226356301|ref|YP_002786041.1| TrkA-C domain-containing protein [Deinococcus deserti VCD115]
Length=168
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/156 (40%), Positives = 95/156 (61%), Gaps = 0/156 (0%)
Query 3 VKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAV 62
+ E LPGVG+RY+F G R+G++ R G ++ + RDDPD + L D+E+EAV
Sbjct 8 LDETALPGVGVRYDFDGRYGKRVGVITHRDGRREIFVSRRDDPDACAMSIVLADDESEAV 67
Query 63 AQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRD 122
A +LG + R ++ +++ GL + S + RPLG+T RTRTGASIVAI+RD
Sbjct 68 ADLLGGSAVTRRMSQSMQDIEGLAMDWLPFEPSSPYAGRPLGETMMRTRTGASIVAIMRD 127
Query 123 EDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVE 158
+ +PGP L+AGD ++V+GT +G+ Q++
Sbjct 128 GHAIPAPGPDFPLQAGDTVVVVGTPNGVTRAAQLLN 163
>gi|315271283|gb|ACO46287.2| putative TrkA-C domain protein [Deinococcus deserti VCD115]
Length=164
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/156 (40%), Positives = 95/156 (61%), Gaps = 0/156 (0%)
Query 3 VKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAV 62
+ E LPGVG+RY+F G R+G++ R G ++ + RDDPD + L D+E+EAV
Sbjct 4 LDETALPGVGVRYDFDGRYGKRVGVITHRDGRREIFVSRRDDPDACAMSIVLADDESEAV 63
Query 63 AQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRD 122
A +LG + R ++ +++ GL + S + RPLG+T RTRTGASIVAI+RD
Sbjct 64 ADLLGGSAVTRRMSQSMQDIEGLAMDWLPFEPSSPYAGRPLGETMMRTRTGASIVAIMRD 123
Query 123 EDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVE 158
+ +PGP L+AGD ++V+GT +G+ Q++
Sbjct 124 GHAIPAPGPDFPLQAGDTVVVVGTPNGVTRAAQLLN 159
>gi|340529426|gb|AEK44631.1| TrkA domain-containing protein [Amycolatopsis mediterranei S699]
Length=160
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/160 (40%), Positives = 97/160 (61%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V+ LPG+G+R +F + G RIG+V +R G ++++ DDPD + LT +EA
Sbjct 1 MNVEVTPLPGIGVRKDFATRTGRRIGVVTQRDGHIELIVSKSDDPDACAASIPLTADEAG 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+A +LGAP++ + TE R++PG+ Q+ I+ F R LGDT RTRTG S+VA+
Sbjct 61 ALANLLGAPQLVAQLTEEHRDLPGISTRQLPIKPSGPFDGRTLGDTAMRTRTGVSVVAVA 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R V SP P GD+L+ +GT +G+ +I++ G
Sbjct 121 RAGQVHPSPAPDFTFTGGDLLVAVGTGEGLEAAAKILKYG 160
>gi|220914397|ref|YP_002489706.1| TrkA-C domain-containing protein [Arthrobacter chlorophenolicus
A6]
gi|219861275|gb|ACL41617.1| TrkA-C domain protein [Arthrobacter chlorophenolicus A6]
Length=160
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/160 (40%), Positives = 95/160 (60%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
M+V E LPG+G R +F + G RIG+V R G ++++ DDPD + + LT +EA
Sbjct 1 MNVDETNLPGLGRRKDFMTASGRRIGVVELREGQTELIVSTWDDPDTCQASIPLTSDEAA 60
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
+ +LG +A + TE ++VPG+ Q I S F ++P+G RTR G SIVAI+
Sbjct 61 TLGNLLGGQHLAMKLTEEHKDVPGIVTRQFSIAPESPFQNQPMGKACIRTRCGVSIVAIM 120
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R+ +VL SPGP +L GD+L+ +GT +G+ I+ G
Sbjct 121 REGEVLPSPGPDVILHTGDLLVAVGTLEGLDSAADILRHG 160
>gi|291003089|ref|ZP_06561062.1| TrkA domain-containing protein [Saccharopolyspora erythraea NRRL
2338]
Length=156
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/153 (42%), Positives = 93/153 (61%), Gaps = 0/153 (0%)
Query 8 LPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAEAVAQILG 67
LPG+G + +FT+ G RIG+++ R G F++++ DPD+ + LT EE A+A +LG
Sbjct 4 LPGLGTQQDFTTRSGHRIGVISYRDGRFELIVCNHGDPDKVATSVDLTVEETSALANLLG 63
Query 68 APRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIVRDEDVLA 127
AP + + TE REV G+ Q+ + GS + R LGDT RTRT SIVA+VR V
Sbjct 64 APHLVAQLTEQQREVAGITTRQLPVAPGSPYDGRALGDTEMRTRTSTSIVAVVRGGTVHP 123
Query 128 SPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
SP P GD+++ +GT DG+ +I++KG
Sbjct 124 SPRPDFEFAGGDLVVAVGTADGLRAATEILDKG 156
>gi|300787854|ref|YP_003768145.1| TrkA domain-containing protein [Amycolatopsis mediterranei U32]
gi|299797368|gb|ADJ47743.1| TrkA domain-containing protein [Amycolatopsis mediterranei U32]
Length=166
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/160 (39%), Positives = 97/160 (61%), Gaps = 0/160 (0%)
Query 1 MDVKEVLLPGVGLRYEFTSYRGDRIGIVARRSGGFDVVLYGRDDPDEARPVLRLTDEEAE 60
++V+ LPG+G+R +F + G RIG+V +R G ++++ DDPD + LT +EA
Sbjct 7 VNVEVTPLPGIGVRKDFATRTGRRIGVVTQRDGHIELIVSKSDDPDACAASIPLTADEAG 66
Query 61 AVAQILGAPRIAERFTELTREVPGLKAGQIHIRAGSLFVDRPLGDTRARTRTGASIVAIV 120
A+A +LGAP++ + TE R++PG+ Q+ I+ F R LGDT RTRTG S+VA+
Sbjct 67 ALANLLGAPQLVAQLTEEHRDLPGISTRQLPIKPSGPFDGRTLGDTAMRTRTGVSVVAVA 126
Query 121 RDEDVLASPGPTDVLRAGDVLIVIGTEDGIAGVEQIVEKG 160
R V SP P GD+L+ +GT +G+ +I++ G
Sbjct 127 RAGQVHPSPAPDFTFTGGDLLVAVGTGEGLEAAAKILKYG 166
Lambda K H
0.319 0.142 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127750398496
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40