BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3238c
Length=244
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610374|ref|NP_217755.1| integral membrane protein [Mycobact... 487 6e-136
gi|340628217|ref|YP_004746669.1| putative integral membrane prot... 482 2e-134
gi|240170340|ref|ZP_04748999.1| hypothetical protein MkanA1_1359... 366 1e-99
gi|254776637|ref|ZP_05218153.1| hypothetical protein MaviaA2_184... 353 9e-96
gi|342861438|ref|ZP_08718085.1| hypothetical protein MCOL_21236 ... 351 6e-95
gi|183981329|ref|YP_001849620.1| hypothetical protein MMAR_1307 ... 342 3e-92
gi|333990242|ref|YP_004522856.1| hypothetical protein JDM601_160... 341 6e-92
gi|118465110|ref|YP_883345.1| hypothetical protein MAV_4200 [Myc... 336 2e-90
gi|336459554|gb|EGO38490.1| NnrU protein [Mycobacterium avium su... 333 1e-89
gi|41409449|ref|NP_962285.1| hypothetical protein MAP3351c [Myco... 333 1e-89
gi|108800452|ref|YP_640649.1| hypothetical protein Mmcs_3486 [My... 328 3e-88
gi|118618052|ref|YP_906384.1| hypothetical protein MUL_2574 [Myc... 323 1e-86
gi|254822985|ref|ZP_05227986.1| hypothetical protein MintA_23859... 322 4e-86
gi|120403930|ref|YP_953759.1| putative integral membrane protein... 319 2e-85
gi|296168972|ref|ZP_06850639.1| integral membrane protein [Mycob... 301 4e-80
gi|240172287|ref|ZP_04750946.1| hypothetical protein MkanA1_2343... 285 4e-75
gi|218244897|ref|YP_002370268.1| putative integral membrane prot... 273 1e-71
gi|114571131|ref|YP_757811.1| putative integral membrane protein... 261 7e-68
gi|27376329|ref|NP_767858.1| hypothetical protein blr1218 [Brady... 260 1e-67
gi|113478173|ref|YP_724234.1| putative integral membrane protein... 259 2e-67
gi|126656691|ref|ZP_01727905.1| hypothetical protein CY0110_2367... 254 8e-66
gi|27380852|ref|NP_772381.1| hypothetical protein blr5741 [Brady... 254 9e-66
gi|172036773|ref|YP_001803274.1| hypothetical protein cce_1858 [... 254 1e-65
gi|67923238|ref|ZP_00516724.1| hypothetical protein CwatDRAFT_28... 251 8e-65
gi|170744462|ref|YP_001773117.1| hypothetical protein M446_6423 ... 249 3e-64
gi|182415980|ref|YP_001821046.1| putative integral membrane prot... 248 5e-64
gi|192291550|ref|YP_001992155.1| hypothetical protein Rpal_3176 ... 248 6e-64
gi|254293495|ref|YP_003059518.1| hypothetical protein Hbal_1129 ... 247 1e-63
gi|220908335|ref|YP_002483646.1| integral membrane protein [Cyan... 247 1e-63
gi|39935902|ref|NP_948178.1| hypothetical protein RPA2835 [Rhodo... 246 3e-63
gi|305667164|ref|YP_003863451.1| hypothetical protein FB2170_129... 243 2e-62
gi|148258569|ref|YP_001243154.1| hypothetical protein BBta_7385 ... 239 2e-61
gi|146337835|ref|YP_001202883.1| hypothetical protein BRADO0716 ... 236 2e-60
gi|87308342|ref|ZP_01090483.1| hypothetical protein DSM3645_1226... 232 4e-59
gi|220924867|ref|YP_002500169.1| hypothetical protein Mnod_5015 ... 226 2e-57
gi|226360761|ref|YP_002778539.1| hypothetical protein ROP_13470 ... 218 6e-55
gi|343926804|ref|ZP_08766297.1| hypothetical protein GOALK_072_0... 218 9e-55
gi|158335687|ref|YP_001516859.1| hypothetical protein AM1_2537 [... 216 2e-54
gi|119503374|ref|ZP_01625458.1| hypothetical protein MGP2080_119... 216 3e-54
gi|111018651|ref|YP_701623.1| S-isoprenylcysteine O-methyltransf... 216 3e-54
gi|283782335|ref|YP_003373090.1| hypothetical protein Psta_4588 ... 204 8e-51
gi|83649623|ref|YP_438058.1| putative protein-S-isoprenylcystein... 192 3e-47
gi|254459258|ref|ZP_05072680.1| putative conserved integral memb... 173 2e-41
gi|319957212|ref|YP_004168475.1| hypothetical protein Nitsa_1478... 173 2e-41
gi|152992511|ref|YP_001358232.1| hypothetical protein SUN_0917 [... 169 2e-40
gi|88706979|ref|ZP_01104677.1| hypothetical protein KT71_11695 [... 169 3e-40
gi|254466266|ref|ZP_05079677.1| conserved hypothetical protein [... 164 7e-39
gi|256823403|ref|YP_003147366.1| hypothetical protein Kkor_2188 ... 164 9e-39
gi|153864085|ref|ZP_01997092.1| conserved hypothetical protein [... 158 5e-37
gi|240171989|ref|ZP_04750648.1| hypothetical protein MkanA1_2192... 145 7e-33
>gi|15610374|ref|NP_217755.1| integral membrane protein [Mycobacterium tuberculosis H37Rv]
gi|15842827|ref|NP_337864.1| hypothetical protein MT3335 [Mycobacterium tuberculosis CDC1551]
gi|31794418|ref|NP_856911.1| integral membrane protein [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=244
Score = 487 bits (1254), Expect = 6e-136, Method: Compositional matrix adjust.
Identities = 244/244 (100%), Positives = 244/244 (100%), Gaps = 0/244 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA
Sbjct 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV
Sbjct 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML
Sbjct 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP
Sbjct 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
Query 241 HRHT 244
HRHT
Sbjct 241 HRHT 244
>gi|340628217|ref|YP_004746669.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|340006407|emb|CCC45587.1| putative conserved integral membrane protein [Mycobacterium canettii
CIPT 140010059]
Length=244
Score = 482 bits (1240), Expect = 2e-134, Method: Compositional matrix adjust.
Identities = 240/244 (99%), Positives = 242/244 (99%), Gaps = 0/244 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKRYLTI YGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVN+VLLGVFA
Sbjct 1 MKRYLTITYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNVVLLGVFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAV+WDVRQPAGRV
Sbjct 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVVWDVRQPAGRV 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
ALWALFWLGWATVL STFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML
Sbjct 121 ALWALFWLGWATVLMSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP
Sbjct 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
Query 241 HRHT 244
HRHT
Sbjct 241 HRHT 244
>gi|240170340|ref|ZP_04748999.1| hypothetical protein MkanA1_13590 [Mycobacterium kansasii ATCC
12478]
Length=251
Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 185/242 (77%), Positives = 204/242 (85%), Gaps = 0/242 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKR+L I YGA SYL+F+VAF YAIGFVG++VVPRTVDHA+ A GQAV VN+VLLG FA
Sbjct 1 MKRFLIIGYGAMSYLIFVVAFLYAIGFVGNIVVPRTVDHAVTASTGQAVAVNVVLLGAFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR FKRWWTRFVP IERSTYVLL+S LLLLYWQWRTMPAVIWDVRQPA RV
Sbjct 61 VQHSVMARPAFKRWWTRFVPQPIERSTYVLLSSAVLLLLYWQWRTMPAVIWDVRQPAARV 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
LW +FW GWA V STFMINHF+L GLRQVYLAWR KPYTE+GF+A LLYR VRHP+ML
Sbjct 121 VLWVVFWFGWAIVFASTFMINHFDLVGLRQVYLAWRAKPYTEVGFRARLLYRVVRHPLML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GF++AFWA P MTAGHLLF+I TGYIL+ALQ EE DL AALGD+YR+YRR V ML P P
Sbjct 181 GFIIAFWAAPTMTAGHLLFSIATTGYILIALQLEESDLTAALGDRYRNYRRTVPMLFPRP 240
Query 241 HR 242
R
Sbjct 241 RR 242
>gi|254776637|ref|ZP_05218153.1| hypothetical protein MaviaA2_18491 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=266
Score = 353 bits (907), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 170/242 (71%), Positives = 200/242 (83%), Gaps = 0/242 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKRYL + YGAA+YL+FL AF Y + F+G+ VPRTVDH +++PIG+AV VNLVLLG+F
Sbjct 13 MKRYLVVGYGAAAYLLFLGAFLYLVAFLGNFWVPRTVDHGLSSPIGEAVAVNLVLLGLFG 72
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR GFK WWTR VP +IERSTYV+L+S L+LLYWQWRTMPAVIW+V PAGR+
Sbjct 73 VQHSVMARPGFKAWWTRLVPATIERSTYVVLSSAVLVLLYWQWRTMPAVIWEVTAPAGRL 132
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
LW LFWLGW L +TFM++HF+LFGLRQVYLAWRGKPY+ IGF A +LYR VRHP+ML
Sbjct 133 VLWTLFWLGWVIALAATFMVSHFDLFGLRQVYLAWRGKPYSHIGFHARMLYRMVRHPLML 192
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GFV+AFWA P MTAGHLLF+I TGYIL+A+ EE DL+ ALGDQYRDYR V ML+P
Sbjct 193 GFVIAFWAAPTMTAGHLLFSIAMTGYILLAVHLEEHDLVQALGDQYRDYRHRVPMLVPLG 252
Query 241 HR 242
HR
Sbjct 253 HR 254
>gi|342861438|ref|ZP_08718085.1| hypothetical protein MCOL_21236 [Mycobacterium colombiense CECT
3035]
gi|342130927|gb|EGT84216.1| hypothetical protein MCOL_21236 [Mycobacterium colombiense CECT
3035]
Length=267
Score = 351 bits (900), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 170/242 (71%), Positives = 197/242 (82%), Gaps = 0/242 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKRYLT+ YGAA+YL+FL F Y + F+G+ VPRTVDH ++APIG+AV+VN+VLLG+F
Sbjct 13 MKRYLTVGYGAAAYLLFLAVFLYLVAFLGNFWVPRTVDHGLSAPIGEAVLVNMVLLGLFG 72
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHSVMAR GFK WWTR VPPSIERSTYV+L++ L+LLYWQWRTMPAVIW V PAGR+
Sbjct 73 LQHSVMARPGFKAWWTRAVPPSIERSTYVMLSNAVLVLLYWQWRTMPAVIWQVELPAGRL 132
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
LW LFWLGWA L STFMINHF+LFGLRQVYLAWRGKPYT I F + YR VRHP+ML
Sbjct 133 VLWTLFWLGWAIALASTFMINHFDLFGLRQVYLAWRGKPYTHIAFHIRMFYRLVRHPLML 192
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GFV+AFWA P MTAGHLLF++ TGYILVA + EE DL+ ALGD Y +YRREV LLP
Sbjct 193 GFVIAFWAAPTMTAGHLLFSVAMTGYILVATRIEEHDLVEALGDDYVNYRREVPRLLPLG 252
Query 241 HR 242
R
Sbjct 253 RR 254
>gi|183981329|ref|YP_001849620.1| hypothetical protein MMAR_1307 [Mycobacterium marinum M]
gi|183174655|gb|ACC39765.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=251
Score = 342 bits (876), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 175/244 (72%), Positives = 199/244 (82%), Gaps = 0/244 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKRYL I YGAA YL+FLVA YAIGFVG +VVPR +DH I PI AV+VN+ LLG+F
Sbjct 1 MKRYLIIGYGAAGYLLFLVATLYAIGFVGAIVVPRNIDHGIDGPIWLAVLVNVALLGLFG 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHSVMAR GFKRWWTRFVP ++ERSTYVLLAS LLLL+WQWRTMPAVIWDV+ P RV
Sbjct 61 IQHSVMARPGFKRWWTRFVPKTVERSTYVLLASAILLLLFWQWRTMPAVIWDVQYPPARV 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
LW LF LGW V S+FM++HF+L GLRQVYLAWR KPYTEI F+ + YR VRHP+ML
Sbjct 121 VLWGLFGLGWVVVFASSFMVSHFDLLGLRQVYLAWREKPYTEINFRVNFFYRVVRHPLML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GF++AFWATP MTAGHLLFAI T Y+LVAL EERDL+AALGDQYRDY+R V MLLP P
Sbjct 181 GFIIAFWATPTMTAGHLLFAIVTTAYVLVALPLEERDLVAALGDQYRDYQRSVPMLLPVP 240
Query 241 HRHT 244
HR +
Sbjct 241 HRGS 244
>gi|333990242|ref|YP_004522856.1| hypothetical protein JDM601_1602 [Mycobacterium sp. JDM601]
gi|333486210|gb|AEF35602.1| integral membrane protein [Mycobacterium sp. JDM601]
Length=247
Score = 341 bits (874), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 162/243 (67%), Positives = 192/243 (80%), Gaps = 0/243 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
M R+L + Y +YLVFL F YA+GFVGD+VVPRTV+H API +A+VV+++LLG+FA
Sbjct 1 MARFLALAYAVLNYLVFLAVFLYAVGFVGDLVVPRTVNHGPPAPIARAIVVDVLLLGLFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR FKRWWTR VPP IERSTYVL +++ L LL+WQWR +P +IWDV P GR
Sbjct 61 VQHSVMARPAFKRWWTRLVPPDIERSTYVLASNLVLALLFWQWRPVPPIIWDVASPVGRT 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
ALW LFW+GWA L STFMI+HF+LFGLRQVYLAWR +PY +GF+A LYR VRHP+ML
Sbjct 121 ALWVLFWIGWAIALASTFMISHFDLFGLRQVYLAWRERPYRPVGFRASALYRVVRHPLML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GFV+AFWA P MTAGHLLFA TGYIL+ALQ EERDL LG++YR YRR V ML+P P
Sbjct 181 GFVIAFWAAPTMTAGHLLFAAATTGYILIALQLEERDLSGMLGEEYRQYRRRVRMLIPVP 240
Query 241 HRH 243
R
Sbjct 241 RRD 243
>gi|118465110|ref|YP_883345.1| hypothetical protein MAV_4200 [Mycobacterium avium 104]
gi|118166397|gb|ABK67294.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=266
Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/242 (71%), Positives = 201/242 (84%), Gaps = 0/242 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKRYL + YGAA+YL+FL AF Y + F+G+ VPRTVDH +++PIG+AVVVNLVLLG+F
Sbjct 13 MKRYLVVGYGAAAYLLFLGAFLYLVAFLGNFWVPRTVDHGLSSPIGEAVVVNLVLLGLFG 72
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR GFK WWTR VP +IERSTYV+L+S L+LLYWQWRTMPAVIW+V PAGR+
Sbjct 73 VQHSVMARPGFKAWWTRLVPATIERSTYVVLSSAVLVLLYWQWRTMPAVIWEVTAPAGRL 132
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
LW LFWLGW L +TFM++HF+LFGLRQVYLAWRGKPY+ IGF A +LYR VRHP+ML
Sbjct 133 VLWTLFWLGWVIALAATFMVSHFDLFGLRQVYLAWRGKPYSHIGFHARMLYRMVRHPLML 192
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GFV+AFWA P MTAGHLLF+I TGYIL+A+ EE DL+ ALGDQYRDYR V ML+P
Sbjct 193 GFVIAFWAAPTMTAGHLLFSIAMTGYILLAVHLEEHDLVQALGDQYRDYRHRVPMLVPLG 252
Query 241 HR 242
HR
Sbjct 253 HR 254
>gi|336459554|gb|EGO38490.1| NnrU protein [Mycobacterium avium subsp. paratuberculosis S397]
Length=266
Score = 333 bits (855), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 170/242 (71%), Positives = 200/242 (83%), Gaps = 0/242 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKRYL + YGAA+YL+FL AF Y + F+G+ VPRTVDH +++PIG+AVVVNLVLLG+F
Sbjct 13 MKRYLVVGYGAAAYLLFLGAFLYLVAFLGNFWVPRTVDHGLSSPIGEAVVVNLVLLGLFG 72
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR GFK WWTR VP +IERSTYV+L+S L+LLYWQWRTMPAVIW+V PAGR+
Sbjct 73 VQHSVMARPGFKAWWTRLVPATIERSTYVVLSSAVLVLLYWQWRTMPAVIWEVTAPAGRL 132
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
LW LFWLGW L +TFM++HF+LFGLRQVYLAWRGKPY+ IGF A +LYR V HP+ML
Sbjct 133 VLWTLFWLGWVIALAATFMVSHFDLFGLRQVYLAWRGKPYSHIGFHARMLYRMVLHPLML 192
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GFV+AFWA P MTAGHLLF+I TGYIL+A+ EE DL+ ALGDQYRDYR V ML+P
Sbjct 193 GFVIAFWAAPTMTAGHLLFSIAMTGYILLAVHLEEHDLVQALGDQYRDYRHRVPMLVPLG 252
Query 241 HR 242
HR
Sbjct 253 HR 254
>gi|41409449|ref|NP_962285.1| hypothetical protein MAP3351c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398280|gb|AAS05901.1| hypothetical protein MAP_3351c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=254
Score = 333 bits (855), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 170/242 (71%), Positives = 200/242 (83%), Gaps = 0/242 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKRYL + YGAA+YL+FL AF Y + F+G+ VPRTVDH +++PIG+AVVVNLVLLG+F
Sbjct 1 MKRYLVVGYGAAAYLLFLGAFLYLVAFLGNFWVPRTVDHGLSSPIGEAVVVNLVLLGLFG 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR GFK WWTR VP +IERSTYV+L+S L+LLYWQWRTMPAVIW+V PAGR+
Sbjct 61 VQHSVMARPGFKAWWTRLVPATIERSTYVVLSSAVLVLLYWQWRTMPAVIWEVTAPAGRL 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
LW LFWLGW L +TFM++HF+LFGLRQVYLAWRGKPY+ IGF A +LYR V HP+ML
Sbjct 121 VLWTLFWLGWVIALAATFMVSHFDLFGLRQVYLAWRGKPYSHIGFHARMLYRMVLHPLML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GFV+AFWA P MTAGHLLF+I TGYIL+A+ EE DL+ ALGDQYRDYR V ML+P
Sbjct 181 GFVIAFWAAPTMTAGHLLFSIAMTGYILLAVHLEEHDLVQALGDQYRDYRHRVPMLVPLG 240
Query 241 HR 242
HR
Sbjct 241 HR 242
>gi|108800452|ref|YP_640649.1| hypothetical protein Mmcs_3486 [Mycobacterium sp. MCS]
gi|119869581|ref|YP_939533.1| hypothetical protein Mkms_3549 [Mycobacterium sp. KMS]
gi|126436076|ref|YP_001071767.1| hypothetical protein Mjls_3499 [Mycobacterium sp. JLS]
gi|108770871|gb|ABG09593.1| putative conserved integral membrane protein [Mycobacterium sp.
MCS]
gi|119695670|gb|ABL92743.1| putative conserved integral membrane protein [Mycobacterium sp.
KMS]
gi|126235876|gb|ABN99276.1| putative conserved integral membrane protein [Mycobacterium sp.
JLS]
Length=257
Score = 328 bits (842), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 176/242 (73%), Positives = 197/242 (82%), Gaps = 0/242 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
M R L +YG SY++FL AF YAIGFVGD VPRTVDH + A IG+AVVVNLVLLG+FA
Sbjct 1 MSRILAAVYGIVSYVIFLAAFLYAIGFVGDFAVPRTVDHGVDASIGEAVVVNLVLLGLFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR FKR WTR+VPP +ERSTYVL+AS+ LLLL+WQWRTMP +WDV GR
Sbjct 61 VQHSVMARPAFKRRWTRWVPPVVERSTYVLIASLLLLLLFWQWRTMPQTVWDVSWAPGRF 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
ALW FW GWATVL STFMINHF+LFGLRQVYL WRG+PYT + FQ LLYR VRHPIML
Sbjct 121 ALWVAFWAGWATVLASTFMINHFDLFGLRQVYLGWRGEPYTGLKFQTLLLYRVVRHPIML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GF+VAFWATP M+AGHLLFAI TGYILVAL+FEE DL A+GD+YRDYRR V ML+P
Sbjct 181 GFIVAFWATPTMSAGHLLFAIATTGYILVALRFEEHDLTEAMGDEYRDYRRRVPMLVPGL 240
Query 241 HR 242
HR
Sbjct 241 HR 242
>gi|118618052|ref|YP_906384.1| hypothetical protein MUL_2574 [Mycobacterium ulcerans Agy99]
gi|118570162|gb|ABL04913.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=248
Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 167/235 (72%), Positives = 191/235 (82%), Gaps = 0/235 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKRYL I YGAA YL+FLVA YAIGFVG +VVPR +DH I PI AV+VN+ LLG+F
Sbjct 1 MKRYLIIGYGAAGYLLFLVATLYAIGFVGAIVVPRNIDHGIDGPIWLAVLVNVALLGLFG 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHSVMAR GFKRWWTRFVP ++ERSTYVLLAS LLLL+ QWRTMPAVIWDV+ P RV
Sbjct 61 IQHSVMARPGFKRWWTRFVPKTVERSTYVLLASAILLLLFLQWRTMPAVIWDVQYPPARV 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
LW LF LGW V S+FM++HF+L GLRQVYLAWR KPYTEI F+ + YR VRHP+ML
Sbjct 121 VLWGLFGLGWVVVFASSFMVSHFDLLGLRQVYLAWREKPYTEINFRVNFYYRVVRHPLML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSM 235
GF++AFWATP MTAGHLLFAI T Y+LVAL EERDL+AALGDQYRDY+R V +
Sbjct 181 GFIIAFWATPTMTAGHLLFAIVTTAYVLVALPLEERDLVAALGDQYRDYQRSVPL 235
>gi|254822985|ref|ZP_05227986.1| hypothetical protein MintA_23859 [Mycobacterium intracellulare
ATCC 13950]
Length=266
Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 172/242 (72%), Positives = 200/242 (83%), Gaps = 0/242 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKR+L + YGAA+YL+FL AF Y + F+G+ VPRTVDH + APIG+AV++N+ LL VFA
Sbjct 13 MKRFLIVGYGAAAYLLFLAAFLYLVAFLGNFWVPRTVDHGLPAPIGEAVLINIGLLAVFA 72
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR FK WWTR VP IERSTYV+L+SV L+LLYWQWRTMPAV+WDVR PAGR+
Sbjct 73 VQHSVMARPSFKAWWTRIVPSPIERSTYVVLSSVVLVLLYWQWRTMPAVVWDVRPPAGRL 132
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
ALW LFWLGWA L +TFM++HF+LFGLRQVYLAWRGKPYT IGF A +LYR VRHP+ML
Sbjct 133 ALWTLFWLGWAIALAATFMVSHFDLFGLRQVYLAWRGKPYTHIGFHARMLYRLVRHPLML 192
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GFV+ FWA P MTAGHLLF++ TGYILVA EE DL+ ALG+QYRDYRR V MLLP
Sbjct 193 GFVIVFWAVPTMTAGHLLFSVAMTGYILVATHLEEHDLVEALGEQYRDYRRRVPMLLPLG 252
Query 241 HR 242
HR
Sbjct 253 HR 254
>gi|120403930|ref|YP_953759.1| putative integral membrane protein [Mycobacterium vanbaalenii
PYR-1]
gi|119956748|gb|ABM13753.1| putative conserved integral membrane protein [Mycobacterium vanbaalenii
PYR-1]
Length=262
Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/237 (69%), Positives = 191/237 (81%), Gaps = 0/237 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
M R L + YGAA YL+FL F YAIGFVGDVVVPR+VDHA+ AP+GQA++VNL LL +FA
Sbjct 1 MTRALAVGYGAACYLLFLAVFLYAIGFVGDVVVPRSVDHAVDAPLGQALIVNLSLLTLFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR FKRWWTR++PP +ERSTYVLLAS+AL LL+WQWR +P V+WDV RV
Sbjct 61 VQHSVMARPAFKRWWTRYIPPPVERSTYVLLASLALALLFWQWRKIPFVVWDVTYQPLRV 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
A+WALFWLGWA VL +TFMINHFELFGLRQV WR +P E GF+A + YR VRHP+ML
Sbjct 121 AVWALFWLGWAIVLAATFMINHFELFGLRQVIANWRAQPDAETGFRATMFYRVVRHPLML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLL 237
GF++AFW+ P MTAGHLLFA TGYIL+ALQ EERDLLA LG +Y YR+ V ML+
Sbjct 181 GFLIAFWSAPTMTAGHLLFATATTGYILIALQLEERDLLATLGARYAAYRQTVPMLV 237
>gi|296168972|ref|ZP_06850639.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896358|gb|EFG76013.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=251
Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 169/243 (70%), Positives = 194/243 (80%), Gaps = 0/243 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKRYLT+ YGAA+YL+FL AF Y IGFVG+ +PR+VD +AAP+ +A ++N L+ F
Sbjct 1 MKRYLTLGYGAAAYLLFLAAFLYLIGFVGNFALPRSVDRGLAAPLAEAALINAALVAAFG 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR FKRWW RFVPPSIERSTYVLL+S L LLYWQWRTMP VIWDVR PA R
Sbjct 61 VQHSVMARPAFKRWWARFVPPSIERSTYVLLSSAVLALLYWQWRTMPTVIWDVRMPAARA 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
LW LFWLGWA L +TF+INHF+LFGLRQVYLA R +PYT I F+ LLYR VRHP+ML
Sbjct 121 LLWVLFWLGWAIALLATFLINHFDLFGLRQVYLASRHRPYTSIEFRVRLLYRVVRHPLML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
G V+AFWA P+MTAGHLLF++G T YILVA Q EERDL+ +LGDQY YRREVSMLLP P
Sbjct 181 GMVIAFWAAPVMTAGHLLFSVGMTIYILVATQLEERDLVTSLGDQYSAYRREVSMLLPIP 240
Query 241 HRH 243
R
Sbjct 241 RRQ 243
>gi|240172287|ref|ZP_04750946.1| hypothetical protein MkanA1_23431 [Mycobacterium kansasii ATCC
12478]
Length=259
Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 158/238 (67%), Positives = 186/238 (79%), Gaps = 0/238 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
M+R L + YGA YL+F+ AF YAIGFVG+++VPRTVD+ I A +AVVVN+VLLG+FA
Sbjct 1 MRRVLVVGYGAICYLIFVAAFLYAIGFVGNLLVPRTVDNGITASTSEAVVVNVVLLGLFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR FK WTR VP ++ERSTYVLL+S+ L LL+WQWRTMPAVIW V P ++
Sbjct 61 VQHSVMARPWFKSRWTRLVPATVERSTYVLLSSLLLFLLFWQWRTMPAVIWAVSWPPAKL 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
+ LFWLGW V TSTFMINHF+LFGLRQVYLA R + Y+ + F+ +LYR VRHPIML
Sbjct 121 LVLGLFWLGWIIVFTSTFMINHFDLFGLRQVYLAARARSYSHLEFRTTMLYRLVRHPIML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
GF+VAFWATP MTAGHLLFA+ TGYILVAL EE DL ALGD YR YR V ML+P
Sbjct 181 GFIVAFWATPTMTAGHLLFAVMTTGYILVALPLEEHDLSRALGDDYRRYRNRVPMLIP 238
>gi|218244897|ref|YP_002370268.1| putative integral membrane protein [Cyanothece sp. PCC 8801]
gi|257057922|ref|YP_003135810.1| hypothetical protein Cyan8802_0003 [Cyanothece sp. PCC 8802]
gi|218165375|gb|ACK64112.1| putative integral membrane protein [Cyanothece sp. PCC 8801]
gi|256588088|gb|ACU98974.1| conserved hypothetical protein [Cyanothece sp. PCC 8802]
Length=257
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 125/239 (53%), Positives = 174/239 (73%), Gaps = 0/239 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
+ R +YG SY++F + F YAIGF+G+++VP+++D P+ QA+++NL LL VFA
Sbjct 13 LGRITAFLYGLVSYIIFFITFLYAIGFLGNILVPKSIDSPSQIPLTQALMINLALLTVFA 72
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHSVMARQ FK WWT+ +P IERSTYVL +S+AL+LL+WQW+ M ++W+++ GR+
Sbjct 73 LQHSVMARQSFKNWWTKIIPQPIERSTYVLFSSLALILLFWQWQPMGGIVWNLQNSIGRI 132
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
L +LF GW VL STF+INHF+LFGLRQVYL RG+ Y + F LY+ VRHP+ +
Sbjct 133 ILLSLFGFGWLLVLISTFLINHFDLFGLRQVYLYLRGETYIPLKFSTPGLYKIVRHPLYV 192
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPW 239
G+ AFW TP MT HL+FAI T YIL+A+Q EERDL++ G+ Y YRR+V M++P+
Sbjct 193 GWFFAFWMTPTMTIAHLVFAIVTTLYILIAIQLEERDLISIHGEDYETYRRQVPMIIPF 251
>gi|114571131|ref|YP_757811.1| putative integral membrane protein [Maricaulis maris MCS10]
gi|114341593|gb|ABI66873.1| putative conserved integral membrane protein [Maricaulis maris
MCS10]
Length=252
Score = 261 bits (667), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 125/244 (52%), Positives = 170/244 (70%), Gaps = 1/244 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
M R + ++G A Y F V F Y+IGFVG+++VP+T+D A P+ A++VNL LL +FA
Sbjct 1 MGRAIGFVFGIAVYAFFFVVFLYSIGFVGNLLVPKTIDSGAAGPLAMAIIVNLALLSLFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHSVMAR FKR WTR +P +ER+ YVLL+SV L ++Y W+ MP VIW V
Sbjct 61 VQHSVMARPAFKRAWTRLIPAYLERTIYVLLSSVVLAVIYAFWQPMPTVIWSVPDGLATY 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
+L ALFW GW VL STF+I+HF+LFGL Q++ R +P+ F+ HL YR VRHP+M
Sbjct 121 SLLALFWAGWLIVLVSTFLISHFDLFGLSQIFANLRQRPFKGAPFRKHLFYRLVRHPMMT 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVAL-QFEERDLLAALGDQYRDYRREVSMLLPW 239
GF++AFWA P+MT GHLLFA+ T Y+++A+ +FEE+DL+A +GD+Y +YR+E LP
Sbjct 181 GFMIAFWAAPVMTVGHLLFAVVTTAYMVIAVYRFEEKDLIAEIGDEYLEYRKEAGAFLPK 240
Query 240 PHRH 243
R
Sbjct 241 LRRR 244
>gi|27376329|ref|NP_767858.1| hypothetical protein blr1218 [Bradyrhizobium japonicum USDA 110]
gi|27349469|dbj|BAC46483.1| blr1218 [Bradyrhizobium japonicum USDA 110]
Length=285
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 136/237 (58%), Positives = 170/237 (72%), Gaps = 0/237 (0%)
Query 3 RYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAVQ 62
+++ +YG A+YLVF V YAIGFV +VVP+T+D +AV++NL+L+ +FAVQ
Sbjct 45 KFIAFLYGIAAYLVFFVTILYAIGFVMGLVVPKTIDTGTDTSTAEAVIINLLLMALFAVQ 104
Query 63 HSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVAL 122
HSVMARQ FK WWT+FV IERSTYVL AS++LLLL+WQWR +P VIW+V P V L
Sbjct 105 HSVMARQRFKTWWTQFVSKPIERSTYVLFASLSLLLLFWQWRPLPTVIWEVEDPDLAVTL 164
Query 123 WALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLGF 182
+ + GW V TSTF+INHFELFGL QV GK T F+ LLY++VRHPI LGF
Sbjct 165 VTVSFAGWVLVFTSTFIINHFELFGLHQVTNHLVGKEATPPRFKTPLLYKFVRHPIYLGF 224
Query 183 VVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPW 239
+VAFWA P+MTAGHLLFA T YI V + EERDL+ GD+YR Y++ VSML+PW
Sbjct 225 IVAFWAAPVMTAGHLLFAAVTTIYIFVGIALEERDLIDLFGDEYRQYKQRVSMLIPW 281
>gi|113478173|ref|YP_724234.1| putative integral membrane protein [Trichodesmium erythraeum
IMS101]
gi|110169221|gb|ABG53761.1| putative conserved integral membrane protein [Trichodesmium erythraeum
IMS101]
Length=248
Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/240 (51%), Positives = 180/240 (75%), Gaps = 0/240 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
M R L IYG YL+ L+ F Y IGFVG+++VP+T+D + + + ++++++L+ +F
Sbjct 1 MSRTLVFIYGIVCYLISLMTFLYTIGFVGNLIVPKTLDLNLDGSLIKGLLIDILLIFLFG 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHS+MARQ FK+WWT+ +P IERSTYVL+AS+ LLLL WQW + +IW+++ P
Sbjct 61 VQHSIMARQSFKKWWTKIIPEVIERSTYVLMASLVLLLLCWQWSSFGGIIWNIQNPIIFN 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
++ +F +GW V STFMINHF+LFGLRQVYL WRG+ Y ++ F+ Y+++RHPIML
Sbjct 121 VIYGIFAVGWLIVFLSTFMINHFDLFGLRQVYLYWRGQEYEDLEFRNPGFYKYIRHPIML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GF++AFWATP+MT+ HL+FAIG T Y+L+ ++ EE D+++ G+ Y++YR++VSML+P P
Sbjct 181 GFLIAFWATPLMTSSHLVFAIGITIYVLIGIKLEEVDMISIYGNLYQEYRQQVSMLIPVP 240
>gi|126656691|ref|ZP_01727905.1| hypothetical protein CY0110_23671 [Cyanothece sp. CCY0110]
gi|126621911|gb|EAZ92619.1| hypothetical protein CY0110_23671 [Cyanothece sp. CCY0110]
Length=255
Score = 254 bits (649), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 114/244 (47%), Positives = 173/244 (71%), Gaps = 0/244 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
+ R ++YG Y FL+ YA+GF+G++ +P+++D + A+++++ LLG+FA
Sbjct 12 LGRVFVLLYGVFCYFAFLLTCAYAVGFIGNIFLPKSLDSNGQESLVTALLIDVGLLGIFA 71
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHS+MARQ FK WWT+ +P IERSTYVL +S+AL+L++WQWR + IW ++
Sbjct 72 LQHSLMARQQFKDWWTQLIPKPIERSTYVLFSSLALILVFWQWRPIGITIWQFDNLVAQI 131
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
++LF LGW VL STF+INHF+LFGLRQVYL + K YT + F+ Y++VRHP+ +
Sbjct 132 IFYSLFTLGWIIVLVSTFLINHFDLFGLRQVYLYFEEKEYTPLKFETPAFYQYVRHPLYV 191
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
G+++A W TP+MT HL+FA+ T YILVA+Q EE+DL+ G++Y++YRREV ML+P+
Sbjct 192 GWLLAIWMTPLMTVAHLVFALVTTIYILVAIQLEEKDLVDIHGEKYKNYRREVPMLIPFI 251
Query 241 HRHT 244
+ +
Sbjct 252 GKKS 255
>gi|27380852|ref|NP_772381.1| hypothetical protein blr5741 [Bradyrhizobium japonicum USDA 110]
gi|27354018|dbj|BAC51006.1| blr5741 [Bradyrhizobium japonicum USDA 110]
Length=259
Score = 254 bits (649), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 133/239 (56%), Positives = 175/239 (74%), Gaps = 7/239 (2%)
Query 3 RYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAVQ 62
R ++Y SY F V+F YA+GFVG+ VVP+++D +G+A++VNL+L+ +FA+Q
Sbjct 4 RLAILLYAIVSYAAFTVSFLYALGFVGNYVVPKSIDVGSPTNLGEAILVNLLLMSLFAIQ 63
Query 63 HSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVAL 122
HSVMAR FKRWW +F+P + +RSTYVLL+S+ LLLL+WQWR +P +W Q +G +A
Sbjct 64 HSVMARPAFKRWWAKFLPLACQRSTYVLLSSLILLLLFWQWRPIPTPVW---QTSG-IAA 119
Query 123 WALF---WLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIM 179
W L WLGW ST MI+HF+LFGLRQ ++A+RG + F+ LLY+ VRHP+M
Sbjct 120 WLLIGVHWLGWLIAFASTHMIDHFDLFGLRQAFVAFRGTEISGQSFRTPLLYKIVRHPLM 179
Query 180 LGFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
LGF++AFWATP MTAGHLLFA+ T YILVALQFEERDL+A G Y+DYRR V ML+P
Sbjct 180 LGFLLAFWATPAMTAGHLLFALANTAYILVALQFEERDLIAEFGATYQDYRRRVPMLVP 238
>gi|172036773|ref|YP_001803274.1| hypothetical protein cce_1858 [Cyanothece sp. ATCC 51142]
gi|171698227|gb|ACB51208.1| hypothetical protein cce_1858 [Cyanothece sp. ATCC 51142]
Length=255
Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/239 (48%), Positives = 170/239 (72%), Gaps = 0/239 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
+ R ++YG Y FL+ YA+GF+G++ +P+++D + A+++++ LLG+FA
Sbjct 12 LSRTFVLLYGVFCYFTFLLTCVYAVGFIGNIFLPKSLDSKSQESLVTALLIDVGLLGIFA 71
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHSVMAR+ FK WWTR +P +ERSTYVL +S+AL+L++WQW + IW+ G++
Sbjct 72 LQHSVMARKQFKAWWTRLIPKPMERSTYVLFSSLALMLVFWQWHPIGITIWNFDNLVGQI 131
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
++LF LGW VL STF+INHF+LFGLRQVYL + K YT + F+ Y++VRHP+ +
Sbjct 132 IFYSLFALGWVIVLVSTFLINHFDLFGLRQVYLYFEEKEYTPLKFKTPAFYQYVRHPLYV 191
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPW 239
G+ + FW TP+MT HL+FA T YILVA+Q EE+DL+A G++Y +YRR+V ML+P+
Sbjct 192 GWFLVFWMTPIMTVAHLVFASVTTIYILVAIQLEEKDLVAIHGEKYENYRRQVPMLIPF 250
>gi|67923238|ref|ZP_00516724.1| hypothetical protein CwatDRAFT_2846 [Crocosphaera watsonii WH
8501]
gi|67854915|gb|EAM50188.1| hypothetical protein CwatDRAFT_2846 [Crocosphaera watsonii WH
8501]
Length=247
Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 111/239 (47%), Positives = 169/239 (71%), Gaps = 0/239 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MKR +++IYG +YL FL+ F Y IGF +++VP+++D A + A+++NL L+G+F
Sbjct 1 MKRIVSVIYGLIAYLTFLITFLYLIGFEENLLVPKSLDSAPTESLSTALLINLALIGLFG 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHS MAR GFK+W + +P +ERSTYVL+ + L+LL+WQWR + V+W+V+
Sbjct 61 LQHSGMARPGFKKWCLKTIPSHLERSTYVLMTCLMLILLFWQWRPLGGVVWEVKNITLTY 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
L+++ LGW V ST +INHF+LFGLRQVYL ++ + Y + F+ Y++VRHP+ML
Sbjct 121 ILYSISALGWVIVFLSTVLINHFDLFGLRQVYLYFKSEKYQYLDFKIIGFYKYVRHPLML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPW 239
GF++A W TP MT H +FA+G T YI++A+ EE+DL+ GD Y+ Y+++VSML+P+
Sbjct 181 GFLIALWFTPKMTITHFIFALGMTAYIIIAIHLEEKDLIDIYGDLYKKYQQQVSMLIPF 239
>gi|170744462|ref|YP_001773117.1| hypothetical protein M446_6423 [Methylobacterium sp. 4-46]
gi|168198736|gb|ACA20683.1| putative membrane protein of unknown function [Methylobacterium
sp. 4-46]
Length=244
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/238 (59%), Positives = 160/238 (68%), Gaps = 0/238 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
M +IY Y +FLV+F YA+GF+G VP+TVD AVVV++ LL VFA
Sbjct 1 MSHAARMIYALVCYAIFLVSFLYAVGFLGGGFVPKTVDDGPVVAPWLAVVVDVALLTVFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHSVMAR FK WWTR VP +ERST+VLLAS+ALLLL+WQWR +PA W V P
Sbjct 61 LQHSVMARPRFKVWWTRIVPKPVERSTFVLLASLALLLLFWQWRPLPATAWSVSDPVAAS 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
L LFWLGW VL STFMI+H +LFGL+Q WR E F LYR VRHPI L
Sbjct 121 VLKGLFWLGWFVVLASTFMISHLDLFGLKQAIQGWRPTAPGEAAFATPFLYRHVRHPIYL 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
GFVVAFWATP MT GHLLFA AT YILV +Q EERDL+A GD+Y YRRE MLLP
Sbjct 181 GFVVAFWATPTMTVGHLLFAAVATAYILVGIQLEERDLVAFFGDRYIRYRREAGMLLP 238
>gi|182415980|ref|YP_001821046.1| putative integral membrane protein [Opitutus terrae PB90-1]
gi|177843194|gb|ACB77446.1| putative conserved integral membrane protein [Opitutus terrae
PB90-1]
Length=279
Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 123/236 (53%), Positives = 168/236 (72%), Gaps = 0/236 (0%)
Query 3 RYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAVQ 62
R+ ++YG SY +FL F YAIGFVGD +VPR++D A+++++VLLG+FA+Q
Sbjct 31 RFAVLLYGFVSYAIFLATFLYAIGFVGDFLVPRSIDSVPVRDTWTALMIDIVLLGLFALQ 90
Query 63 HSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVAL 122
HSVMAR FKR TR++P ERSTYVL++S+AL+L++W+W + VIW+V P GRV L
Sbjct 91 HSVMARPWFKRALTRYLPEPAERSTYVLMSSLALILMFWRWEPIGGVIWNVESPLGRVLL 150
Query 123 WALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLGF 182
+ F GW TVL +TF+INHF+LFGLRQV+ +R + Y + F Y+ VRHP+ +G+
Sbjct 151 HSGFAFGWLTVLVTTFLINHFDLFGLRQVWKFFRRQRYVSLKFVTPGPYKLVRHPLYVGW 210
Query 183 VVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
+ AFW TP MTA HL+FA+ T YILVA+QFEERDL+A G Y +YRR M++P
Sbjct 211 LFAFWCTPHMTAAHLVFAVLTTAYILVAIQFEERDLIAHHGSDYTEYRRRTPMMVP 266
>gi|192291550|ref|YP_001992155.1| hypothetical protein Rpal_3176 [Rhodopseudomonas palustris TIE-1]
gi|192285299|gb|ACF01680.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
Length=266
Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 135/247 (55%), Positives = 170/247 (69%), Gaps = 7/247 (2%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
+KR L YG SY VFLV+ YA GF G+ +V +++D A+ GQAV++NL L+G+FA
Sbjct 2 IKRLLIPTYGLLSYAVFLVSMIYAPGFFGNTLVSKSIDVGAASSPGQAVLINLQLIGLFA 61
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHS+MARQ FK+WW R +P +RSTYVLL S+ LLLL+WQWR +P V+W +
Sbjct 62 IQHSIMARQRFKQWWARHLPAPCQRSTYVLLTSLLLLLLFWQWRPIPVVVWSTSG----I 117
Query 121 ALW---ALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHP 177
A W L+WLGW VL ST M++H +LFGLRQ + A RG F+ LLYR VRHP
Sbjct 118 AAWLLVGLYWLGWVLVLASTHMVDHLDLFGLRQSFSAMRGTEPLRPAFRTPLLYRLVRHP 177
Query 178 IMLGFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLL 237
+MLGF++ FWATP MTAGHLLFA+ T YIL+ALQFEERDL+A G Y+ YR V MLL
Sbjct 178 LMLGFLIVFWATPEMTAGHLLFAVVITIYILIALQFEERDLIAEFGATYQQYRERVPMLL 237
Query 238 PWPHRHT 244
P R T
Sbjct 238 PRVLRRT 244
>gi|254293495|ref|YP_003059518.1| hypothetical protein Hbal_1129 [Hirschia baltica ATCC 49814]
gi|254042026|gb|ACT58821.1| conserved hypothetical protein [Hirschia baltica ATCC 49814]
Length=241
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/236 (54%), Positives = 163/236 (70%), Gaps = 0/236 (0%)
Query 3 RYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAVQ 62
R L +IYG Y FL+ F Y I FVGD T++ +PIG A +N++LL +F++Q
Sbjct 2 RALVLIYGTICYTAFLLVFLYLIAFVGDYGDGNTLNKGPNSPIGIAFTINVILLFLFSIQ 61
Query 63 HSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVAL 122
HS MAR FKRW + VP SIERSTYVLL ++ L+LLY+QWR + ++W + PA + L
Sbjct 62 HSAMARPTFKRWLAKLVPASIERSTYVLLTNLVLVLLYFQWRPIDGLVWQITNPAIIIIL 121
Query 123 WALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLGF 182
+LFW+GWATVL STFMINHFELFGLRQ++ W F+ Y VRHPI GF
Sbjct 122 QSLFWIGWATVLCSTFMINHFELFGLRQIWQNWTRTTAAPPTFRTPFFYNLVRHPIYTGF 181
Query 183 VVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
++AFWATP MTAGHLLFA G T YI + +QFEERDLL G+QY+ YR++V+M++P
Sbjct 182 LIAFWATPTMTAGHLLFASGMTLYIFIGIQFEERDLLRIFGEQYQKYRKQVAMVIP 237
>gi|220908335|ref|YP_002483646.1| integral membrane protein [Cyanothece sp. PCC 7425]
gi|219864946|gb|ACL45285.1| putative integral membrane protein [Cyanothece sp. PCC 7425]
Length=245
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/238 (55%), Positives = 166/238 (70%), Gaps = 0/238 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
+ R YG SY +FL+ F YA+GFVG+ VP+T+D P G A+ +++ LLG+FA
Sbjct 3 LPRLTAFGYGVLSYGIFLITFLYALGFVGNFGVPKTIDGLPQMPFGPALAIDVALLGLFA 62
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHSVMARQGFKRWWT F+P IERSTYVL +S+ALLLL+WQW+ + V+W V GR
Sbjct 63 IQHSVMARQGFKRWWTSFIPKPIERSTYVLFSSLALLLLFWQWQPLGGVVWQVDHQLGRT 122
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
LW F GW VL +TF+INHF+LFGLRQVYL RG+ YT + F Y +RHP+ L
Sbjct 123 ILWTAFACGWLLVLVTTFLINHFDLFGLRQVYLYLRGQEYTTLKFVTPGPYNHIRHPLYL 182
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
G+++AFW+TP MT HLLFA+ T YIL A+Q EE+DL+ G Y +YRR V ML+P
Sbjct 183 GWLLAFWSTPTMTVTHLLFAVITTVYILGAIQLEEQDLVQQHGQDYANYRRRVPMLIP 240
>gi|39935902|ref|NP_948178.1| hypothetical protein RPA2835 [Rhodopseudomonas palustris CGA009]
gi|39649756|emb|CAE28277.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length=266
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/247 (55%), Positives = 169/247 (69%), Gaps = 7/247 (2%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
+KR L YG SY VFLV+ YA GF G+ +V +++D A+ GQA ++NL L+G+FA
Sbjct 2 IKRLLIPTYGLLSYAVFLVSMIYAPGFFGNTLVSKSIDVGAASSPGQAFLINLQLIGLFA 61
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHS+MARQ FK+WW R +P +RSTYVLL S+ LLLL+WQWR +P V+W +
Sbjct 62 IQHSIMARQRFKQWWARHLPAPCQRSTYVLLTSLLLLLLFWQWRPIPVVVWSTSG----I 117
Query 121 ALW---ALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHP 177
A W L+W+GW VL ST MI+H +LFGLRQ + A RG F+ LLYR VRHP
Sbjct 118 AAWLLVGLYWMGWVLVLASTHMIDHLDLFGLRQSFSAMRGTEPLRPAFRTPLLYRLVRHP 177
Query 178 IMLGFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLL 237
+MLGF++ FWATP MTAGHLLFA+ T YIL+ALQFEERDL+A G Y+ YR V MLL
Sbjct 178 LMLGFLIVFWATPEMTAGHLLFAVVITIYILIALQFEERDLIAEFGATYQQYRERVPMLL 237
Query 238 PWPHRHT 244
P R T
Sbjct 238 PRVLRRT 244
>gi|305667164|ref|YP_003863451.1| hypothetical protein FB2170_12981 [Maribacter sp. HTCC2170]
gi|88708098|gb|EAR00336.1| hypothetical protein FB2170_12981 [Maribacter sp. HTCC2170]
Length=245
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/244 (47%), Positives = 170/244 (70%), Gaps = 1/244 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
MK+ + ++YG +Y VFL+AF YAIGFVG+++VP+++D + ++ +N++LL VFA
Sbjct 1 MKKSIILLYGIVAYFVFLIAFLYAIGFVGNIIVPKSIDSGADTTMYSSIFINVILLSVFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHS+MAR FK W ++ERSTY+LL+S+AL+L+YWQW+ + ++W+
Sbjct 61 LQHSIMARPKFKEWLNSIFSQAMERSTYILLSSLALILIYWQWQPITTIVWETENTILSS 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
+ +F+LGW VL STFMINHFELFGL Q++ + K FQ + LY+ VRHPIML
Sbjct 121 IITGIFFLGWLIVLLSTFMINHFELFGLSQIFDNLKNKQTANPKFQTNYLYKIVRHPIML 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQF-EERDLLAALGDQYRDYRREVSMLLPW 239
GF++AFWATP MT GHLLFA+ T YI +A+++ EE+DL +G++Y Y++EV M++P+
Sbjct 181 GFIIAFWATPTMTVGHLLFALVTTIYIFIAVKYLEEKDLRKFIGEKYETYQKEVPMIIPF 240
Query 240 PHRH 243
Sbjct 241 TKNK 244
>gi|148258569|ref|YP_001243154.1| hypothetical protein BBta_7385 [Bradyrhizobium sp. BTAi1]
gi|146410742|gb|ABQ39248.1| putative membrane protein of unknown function [Bradyrhizobium
sp. BTAi1]
Length=252
Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/236 (57%), Positives = 167/236 (71%), Gaps = 7/236 (2%)
Query 7 IIYGAASYLVFLVAFGYAIGFVGDV--VVPRTVDHAIAAPIGQAVVVNLVLLGVFAVQHS 64
+ Y ASY VF V+F +A+GFVG+ + +++D G+A+++++ LL +FA+QHS
Sbjct 1 MFYAIASYAVFFVSFIWALGFVGNYNQFIAKSIDTGPPGDWGEAILIDVALLALFALQHS 60
Query 65 VMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVA--L 122
VMAR FKRWWTR +P + ERSTYVLL S+ LLLL+WQWR +PA +W Q G VA L
Sbjct 61 VMARPAFKRWWTRVIPAAAERSTYVLLTSLMLLLLFWQWRPIPAPVW---QAEGIVAASL 117
Query 123 WALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLGF 182
+ WLGW VL ST+MINHF+LFGLRQ A RG F+A LLYR VRHP+MLGF
Sbjct 118 TGMHWLGWLIVLASTYMINHFDLFGLRQALFALRGTEAPPEPFKAPLLYRLVRHPLMLGF 177
Query 183 VVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
++AFWATP MT GHLLFA+ T YILV LQ EERDL+AA G+ Y+ YR V MLLP
Sbjct 178 LLAFWATPTMTVGHLLFAVLNTAYILVGLQLEERDLIAAFGETYQRYRERVPMLLP 233
>gi|146337835|ref|YP_001202883.1| hypothetical protein BRADO0716 [Bradyrhizobium sp. ORS 278]
gi|146190641|emb|CAL74643.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium
sp. ORS 278]
Length=260
Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/239 (55%), Positives = 173/239 (73%), Gaps = 4/239 (1%)
Query 3 RYLTIIYGAASYLVFLVAFGYAIGFVGDV--VVPRTVDHAIAA-PIGQAVVVNLVLLGVF 59
R L +IY ASY +FLV+F +A+GF+G+ + +T+D AA P+ +++VV+++LL +F
Sbjct 4 RLLIMIYAIASYALFLVSFAWALGFIGNYGQLAAKTIDSGGAAGPLAESIVVDVLLLALF 63
Query 60 AVQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGR 119
A+QHSVMAR FKRWWT +P + ERSTYVLL+S+ LLLL WQWR + IW V AG+
Sbjct 64 ALQHSVMARPAFKRWWTTLIPAATERSTYVLLSSLVLLLLLWQWRPIATPIWRVDGLAGQ 123
Query 120 VALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIM 179
V L + WLGW L+ST+MI+HF LFGLRQ + A RG P F+ LLYR VRHP+M
Sbjct 124 V-LTGIQWLGWLVALSSTYMIDHFGLFGLRQGFFALRGTPVPGQTFRTPLLYRLVRHPLM 182
Query 180 LGFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
LGF++AFWATP M+ GHLLFA +TGYIL+ + EERDL+A G+ Y YR++V MLLP
Sbjct 183 LGFLLAFWATPEMSVGHLLFAALSTGYILIGSRLEERDLVAEFGEIYEHYRQQVPMLLP 241
>gi|87308342|ref|ZP_01090483.1| hypothetical protein DSM3645_12266 [Blastopirellula marina DSM
3645]
gi|87288899|gb|EAQ80792.1| hypothetical protein DSM3645_12266 [Blastopirellula marina DSM
3645]
Length=242
Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 111/237 (47%), Positives = 157/237 (67%), Gaps = 0/237 (0%)
Query 2 KRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAV 61
KR L +G +Y +FL F Y+I F+GD+ +PRT+D A++VNL+L+ F +
Sbjct 3 KRVLVFAFGCIAYTMFLGVFLYSIAFIGDLWIPRTIDAPAQWGTAGAIIVNLLLIAAFGI 62
Query 62 QHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVA 121
QHS MAR FKRW T+++P + ERS YV ++A+++L+ W+ +P VIW V +
Sbjct 63 QHSGMARPAFKRWLTQYIPKAAERSLYVFSTNLAMIVLFLVWQPLPLVIWQVTSLPAQAT 122
Query 122 LWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLG 181
L+ L+ LGWA V ST +I+HF+LFGLRQ + RG Y + FQ LLYR++RHP+ +G
Sbjct 123 LYTLYGLGWALVFVSTCLISHFDLFGLRQAWFYLRGADYHPLQFQTPLLYRYIRHPLYVG 182
Query 182 FVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
+ + FW P MT GHLLFA+G T YIL+A+ EERDL+A GD Y+ YRR+V M +P
Sbjct 183 WFMVFWMAPTMTLGHLLFALGTTAYILMAIPLEERDLIAVHGDDYKQYRRDVRMFIP 239
>gi|220924867|ref|YP_002500169.1| hypothetical protein Mnod_5015 [Methylobacterium nodulans ORS
2060]
gi|219949474|gb|ACL59866.1| conserved hypothetical protein [Methylobacterium nodulans ORS
2060]
Length=242
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/242 (52%), Positives = 168/242 (70%), Gaps = 0/242 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
M R ++YG +Y++ L+AF YAIGFV + V +T+D A G +++++++LL +FA
Sbjct 1 MGRTSALLYGLVAYVLSLIAFVYAIGFVENAGVSKTIDSGEAGSFGLSLLIDMLLLSLFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
VQHS+MAR FKRWW + +P +ERSTYVL AS ALLLL+WQWR +PA ++ V+
Sbjct 61 VQHSLMARPFFKRWWLKVIPAPVERSTYVLCASSALLLLFWQWRPLPAEVFSVQTSPFDA 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
AL L GW L STF+I+HFELFGLRQVY+ + G+ + F+ LY VRHPI L
Sbjct 121 ALIGLSLFGWGLALVSTFLISHFELFGLRQVYMNFIGRDAQDNTFKITGLYNVVRHPIYL 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
GF++AFWATP MT G LLFA+ T YI+V + EE+DL+A GDQYR Y+R+V+ML P+
Sbjct 181 GFIIAFWATPQMTVGRLLFALVTTAYIMVGIAHEEKDLIAKHGDQYRQYKRQVAMLFPFR 240
Query 241 HR 242
R
Sbjct 241 VR 242
>gi|226360761|ref|YP_002778539.1| hypothetical protein ROP_13470 [Rhodococcus opacus B4]
gi|226239246|dbj|BAH49594.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=260
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 130/236 (56%), Positives = 161/236 (69%), Gaps = 0/236 (0%)
Query 3 RYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAVQ 62
R L YG YL FLV F YAIG+V +VVP T++ AP+ AVVV++VLL +FA+Q
Sbjct 18 RSLMTAYGTVVYLAFLVVFVYAIGWVEGLVVPHTINDGPDAPVAVAVVVDVVLLTIFAMQ 77
Query 63 HSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVAL 122
HSVMAR FK+ WTR VP +ERSTYVL A+ AL LL WQWRT+P IWDV RVAL
Sbjct 78 HSVMARPWFKKRWTRIVPEPMERSTYVLFATAALALLMWQWRTLPDQIWDVETNWVRVAL 137
Query 123 WALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLGF 182
+ + G+A VL +TF I+HF+LFGLRQV GK F+ +LYR +RHP+ GF
Sbjct 138 YVVSLGGYALVLAATFAIDHFDLFGLRQVLRNQSGKSALPSHFRTPMLYRVIRHPLYAGF 197
Query 183 VVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
++AFW P MT G LLFA+G TG+ILVA++FEE DL+ GD YR YR V ML+P
Sbjct 198 IIAFWVAPTMTWGRLLFAVGTTGFILVAVRFEEHDLVDTFGDDYRTYRTRVPMLVP 253
>gi|343926804|ref|ZP_08766297.1| hypothetical protein GOALK_072_00260 [Gordonia alkanivorans NBRC
16433]
gi|343763164|dbj|GAA13223.1| hypothetical protein GOALK_072_00260 [Gordonia alkanivorans NBRC
16433]
Length=281
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 126/247 (52%), Positives = 152/247 (62%), Gaps = 9/247 (3%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDV--------VVPRTVDHA-IAAPIGQAVVV 51
+ R + + YG +Y+ FLV F +AI FV + +VPRT+D + + AVVV
Sbjct 19 LTRTVYLAYGVTAYVAFLVVFLWAIAFVENASIVLGGVDIVPRTIDRGGPSTGVVAAVVV 78
Query 52 NLVLLGVFAVQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIW 111
+L LL +FA QHSVMAR GFKR WTR VP IERSTYVL A+ L L W W + +W
Sbjct 79 DLGLLTLFAAQHSVMARDGFKRRWTRIVPQPIERSTYVLAATACLAALLWWWHPITTTVW 138
Query 112 DVRQPAGRVALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLY 171
DV A R L A GW VLTSTF+INHF+LFGLRQV R +P F L Y
Sbjct 139 DVSTSALRWVLVAASLFGWVLVLTSTFLINHFDLFGLRQVVANARRRPLPPYRFITPLWY 198
Query 172 RWVRHPIMLGFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRR 231
VRHPI LGFV+AFW P MTAGHLLFA TGYI + + EERDL+ G+ Y +YRR
Sbjct 199 GIVRHPIYLGFVIAFWVAPTMTAGHLLFACATTGYIFIGIHLEERDLIRDFGNDYVEYRR 258
Query 232 EVSMLLP 238
V ML+P
Sbjct 259 RVPMLVP 265
>gi|158335687|ref|YP_001516859.1| hypothetical protein AM1_2537 [Acaryochloris marina MBIC11017]
gi|158305928|gb|ABW27545.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length=248
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/245 (43%), Positives = 152/245 (63%), Gaps = 1/245 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGD-VVVPRTVDHAIAAPIGQAVVVNLVLLGVF 59
M RYL ++YG SYL+ L + I F+G +P +D P+G A+++N+ L+ +F
Sbjct 1 MGRYLILVYGIFSYLIGLGGLVFFILFIGGWEFMPVHIDSGTPGPLGIALLINVGLVLLF 60
Query 60 AVQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGR 119
+QHSVMAR GFK+ WT+ +P + ERSTYVLL+ + L L+ W+T+P +W + R
Sbjct 61 GLQHSVMARSGFKKTWTKLIPKAAERSTYVLLSGIILCLIGLYWQTLPGTLWQIDNSIAR 120
Query 120 VALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIM 179
+ A +GW ++ ++F+INHFELFGL+QVY + KP F +Y+ VRHPI
Sbjct 121 TIIIACQLVGWVLLVLASFVINHFELFGLQQVYFNFVNKPEPAPNFTDRFIYKLVRHPIQ 180
Query 180 LGFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPW 239
LG +V W TP MT HL+ + + YI + L +EE+DL+A LG +Y+DY VS LLP
Sbjct 181 LGVLVGIWLTPTMTMTHLMLSSMMSSYIFIGLYYEEKDLIATLGQEYKDYMERVSKLLPI 240
Query 240 PHRHT 244
P + T
Sbjct 241 PKKAT 245
>gi|119503374|ref|ZP_01625458.1| hypothetical protein MGP2080_11938 [marine gamma proteobacterium
HTCC2080]
gi|119461020|gb|EAW42111.1| hypothetical protein MGP2080_11938 [marine gamma proteobacterium
HTCC2080]
Length=244
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/238 (43%), Positives = 157/238 (66%), Gaps = 0/238 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
M + +++G +Y+ F F Y I FV + VVPR++ + +A++++L L+ +FA
Sbjct 1 MGKASRLLFGLLAYVFFFAMFLYLIAFVSNQVVPRSISIGPSNAPLKALLIDLFLVSLFA 60
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHS+MAR FK ++ PP+IERS YV+++S+AL LL+ W +P +W + R
Sbjct 61 IQHSIMARPWFKAALKKYWPPAIERSLYVVMSSLALYLLFVFWHPIPTTVWQIENNTLRA 120
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
+W LGW +VL STF+I+HFELFGLRQ++ W+ +P F+ L Y+ VRHPI
Sbjct 121 LVWGTAGLGWISVLISTFLIDHFELFGLRQIWSDWKDEPMPNQAFRQPLFYKLVRHPIYT 180
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
GF++AFWA+P MTAGHL+F+ T YI + +++EE+DL ++LGD Y+DY R V ++P
Sbjct 181 GFLIAFWASPDMTAGHLVFSTAMTVYIFIGIRYEEKDLRSSLGDVYKDYSRRVGKVVP 238
>gi|111018651|ref|YP_701623.1| S-isoprenylcysteine O-methyltransferase [Rhodococcus jostii RHA1]
gi|110818181|gb|ABG93465.1| possible S-isoprenylcysteine O-methyltransferase [Rhodococcus
jostii RHA1]
Length=260
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/236 (54%), Positives = 160/236 (68%), Gaps = 0/236 (0%)
Query 3 RYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAVQ 62
R L +YG Y+ FL+ F YAIG+V +VVP T++ AP+ AVV+++VLL VFA+Q
Sbjct 18 RTLITVYGTLVYVTFLIVFLYAIGWVEGLVVPHTINDGPDAPVAVAVVIDVVLLTVFAMQ 77
Query 63 HSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVAL 122
HSVMAR FK+ WTR VP +ERSTYVL A+ AL LL WQWR +P IWDV RV +
Sbjct 78 HSVMARPWFKKRWTRIVPEPMERSTYVLFATAALALLMWQWRPLPEQIWDVETDWVRVVI 137
Query 123 WALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLGF 182
+ + GWA VL +TF I+HF+LFGLRQV GK F+ +LYR +RHP+ GF
Sbjct 138 YVVSLGGWALVLAATFAIDHFDLFGLRQVLRNQSGKSALPSHFRTPVLYRVIRHPLYAGF 197
Query 183 VVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
++AFW P MT G LLFA+G TG+ILVA++FEE DL+ GD YR YR V ML+P
Sbjct 198 IIAFWVAPTMTWGRLLFAVGTTGFILVAVRFEEHDLVDTFGDDYRTYRSRVPMLVP 253
>gi|283782335|ref|YP_003373090.1| hypothetical protein Psta_4588 [Pirellula staleyi DSM 6068]
gi|283440788|gb|ADB19230.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
Length=243
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 116/216 (54%), Positives = 150/216 (70%), Gaps = 0/216 (0%)
Query 23 YAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAVQHSVMARQGFKRWWTRFVPPS 82
YAIGF+G + P +D I +A+ V++ LL +FAVQHSVMAR FK TR +P +
Sbjct 23 YAIGFLGGFLAPTQLDGPRTFTIVEAMAVDVALLLLFAVQHSVMARPWFKVQLTRLLPAA 82
Query 83 IERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVALWALFWLGWATVLTSTFMINH 142
+ERSTYVLL+SV +LLL+WQWR + +IW+ P RVA +AL+ GW ++ ST INH
Sbjct 83 MERSTYVLLSSVVMLLLFWQWRPINWIIWNAESPLLRVACYALYATGWLVIVLSTLQINH 142
Query 143 FELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLGFVVAFWATPMMTAGHLLFAIG 202
F+LFGLRQV+LA+ GK YT + L YRWVRHP+ +G+++ FWATP M GHLLFA
Sbjct 143 FDLFGLRQVWLAFTGKSYTHLPLTRPLFYRWVRHPLYVGWLLTFWATPTMGLGHLLFASI 202
Query 203 ATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
T YILVA+ EERDLLA G Y Y++EV ML+P
Sbjct 203 TTLYILVAIVLEERDLLAHHGPAYAAYQKEVPMLVP 238
>gi|83649623|ref|YP_438058.1| putative protein-S-isoprenylcysteine methyltransferase [Hahella
chejuensis KCTC 2396]
gi|83637666|gb|ABC33633.1| putative protein-S-isoprenylcysteine methyltransferase [Hahella
chejuensis KCTC 2396]
Length=253
Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/235 (41%), Positives = 136/235 (58%), Gaps = 0/235 (0%)
Query 9 YGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAVQHSVMAR 68
Y + YL + A Y IGFV + VP+ ++ A+ +++ L+ +F VQHS+MAR
Sbjct 14 YASVCYLAAVGAMLYFIGFVNGLPVPKAINDGPLLDTPTALFIDIGLMALFGVQHSLMAR 73
Query 69 QGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVALWALFWL 128
+ FK W TR + P+IER+TY L ++ +++ W +P V+W + V L +
Sbjct 74 RSFKSWLTRRISPAIERATYCLATTLVFAAVFYFWAPLPTVVWSIDGEPANVFFLTLAFA 133
Query 129 GWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLGFVVAFWA 188
GW + +TFM++HFELFGLRQ + +RG+ F+ YR VRHPI G +V W+
Sbjct 134 GWGVMFLATFMLDHFELFGLRQPWRKFRGQSTPPTEFRVSQFYRVVRHPIQSGILVGMWS 193
Query 189 TPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWPHRH 243
T + T GH +FA G T YIL+ L FEERDL+ G Y DYRR V ML P P R
Sbjct 194 TSVATLGHCVFAGGMTLYILIGLYFEERDLVREFGRTYLDYRRRVGMLFPLPKRE 248
>gi|254459258|ref|ZP_05072680.1| putative conserved integral membrane protein [Campylobacterales
bacterium GD 1]
gi|207084151|gb|EDZ61441.1| putative conserved integral membrane protein [Campylobacterales
bacterium GD 1]
Length=243
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/243 (34%), Positives = 144/243 (60%), Gaps = 1/243 (0%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGD-VVVPRTVDHAIAAPIGQAVVVNLVLLGVF 59
MK+YL +Y Y++ ++ + I +V + +D++I + +++N LL F
Sbjct 1 MKKYLIFLYSLVGYILSIITLSFLILWVYPWEFMKFNIDNSIISLDINPILINTGLLLFF 60
Query 60 AVQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGR 119
+QHS+MAR FK + V S++ +TY +S+ L+L+++ W+ + IW+++
Sbjct 61 GLQHSLMARSFFKDGLLKDVSSSVKSATYSFASSICLILIFYFWQPIEGYIWNIQNDILF 120
Query 120 VALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIM 179
+++ ++ +GW + +TF+I+HFELFGL Q Y A + P E+ FQ Y+++RHPI
Sbjct 121 LSITLIYIIGWLSAFVATFIIDHFELFGLHQGYRALKNIPEPEVKFQVRYFYKYIRHPIQ 180
Query 180 LGFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPW 239
G ++ WATP M+ HLL ++G T Y+LV L +EE+ L+ G +Y+DY + ML+P+
Sbjct 181 AGTLIGLWATPSMSYTHLLLSVGMTIYVLVGLYYEEKSLIKTFGKEYKDYIKTTPMLIPF 240
Query 240 PHR 242
R
Sbjct 241 GER 243
>gi|319957212|ref|YP_004168475.1| hypothetical protein Nitsa_1478 [Nitratifractor salsuginis DSM
16511]
gi|319419616|gb|ADV46726.1| hypothetical protein Nitsa_1478 [Nitratifractor salsuginis DSM
16511]
Length=252
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/242 (41%), Positives = 140/242 (58%), Gaps = 6/242 (2%)
Query 1 MKRYLTIIYGAASYLVFLVAFGYAIGFVGDVV-VPRTVDHAIAAPIGQAVVVNLVLLGVF 59
MKR+L ++YG +YL+ L Y + +V +P ++D P+ +++ +L L+ +F
Sbjct 1 MKRHLFLLYGIVAYLIGLGTLLYLVFWVYPWSWMPTSIDSPKPGPLLPSLLWDLGLILLF 60
Query 60 AVQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGR 119
VQHS+M R FK W+ +V +R TY L++S L L+ WR +P ++W G
Sbjct 61 GVQHSLMVRPRFKAWFDCYVSYGAQRPTYTLISSFFLALILVGWRPLPGILWHFE--PGS 118
Query 120 VALWA---LFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRH 176
W L++LGW + +TFMINHF + GL Q + W G E F YRW+RH
Sbjct 119 FGWWVMTLLYFLGWGVAVIATFMINHFAMLGLYQAWRGWLGLGEAEAAFTERGFYRWIRH 178
Query 177 PIMLGFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSML 236
PI G ++ WATP+M+ GHLLFA+ T Y+L+ L FEERDL+ LG Y DYRR V ML
Sbjct 179 PIQAGTLLGLWATPVMSTGHLLFALSFTIYVLIGLYFEERDLMRTLGKPYADYRRRVPML 238
Query 237 LP 238
P
Sbjct 239 FP 240
>gi|152992511|ref|YP_001358232.1| hypothetical protein SUN_0917 [Sulfurovum sp. NBC37-1]
gi|151424372|dbj|BAF71875.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length=247
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/242 (41%), Positives = 147/242 (61%), Gaps = 3/242 (1%)
Query 2 KRYLTIIYGAASYLVFLVAFGYAIGFVGD-VVVPRTVDHAIAAPIGQAVVVNLVLLGVFA 60
++L +YG +Y+V L + I ++ D VV VD +G A+++++ L+ +F
Sbjct 6 DKWLIFLYGVFAYIVGLTGQIWFILYISDWNVVSNNVDMPQEISLGTALLIDIALILLFG 65
Query 61 VQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRV 120
+QHS MAR+GFKR TR +P ERSTYVLL+ V +++ ++ + +W V +
Sbjct 66 LQHSGMARRGFKRMVTRMIPKVSERSTYVLLSGVVFIVICLYYQPIDGYVWKVEIGWLKW 125
Query 121 ALWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIML 180
L A F GW + ++F+INHFELFGL+QVY GK I F+ LYR++RHPI L
Sbjct 126 LLEAGFVFGWGLSVYASFIINHFELFGLQQVYFYLTGKEAKPITFKEKHLYRYLRHPIQL 185
Query 181 GFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLPWP 240
G ++ W +P M+ GHL+ +IG T YI + L FEE+DL+ LG+ Y +Y++ V M+ WP
Sbjct 186 GVLMGMWFSPAMSYGHLVLSIGFTIYIFIGLYFEEKDLVKELGEAYVNYKKRVRMM--WP 243
Query 241 HR 242
R
Sbjct 244 VR 245
>gi|88706979|ref|ZP_01104677.1| hypothetical protein KT71_11695 [Congregibacter litoralis KT71]
gi|88698790|gb|EAQ95911.1| hypothetical protein KT71_11695 [Congregibacter litoralis KT71]
Length=249
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/234 (43%), Positives = 141/234 (61%), Gaps = 9/234 (3%)
Query 8 IYGAASYLVFLVAFGYAIGFVGDVVVPR-TVDH--AIAAPIGQAVVVNLVLLGVFAVQHS 64
+ G S L F++ +A F+G V +PR +D +AAP+ A ++NL L+ +F +QHS
Sbjct 17 LLGVGSLLAFIL---FANNFMGLVQLPRYDIDSPATVAAPL--AWLINLSLIVLFGLQHS 71
Query 65 VMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVALWA 124
VMAR GFK T+F+P +ERSTYVL +V L + W+ + ++W V+ GR +
Sbjct 72 VMARPGFKGVLTKFLPSHLERSTYVLGTAVVLGAIVGFWQGITPLLWQVQSELGRQVITG 131
Query 125 LFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLGFVV 184
+++LGWA L +TFM+NHF LFGL+Q + ++ F+ L YR+VRHPI G V+
Sbjct 132 IYFLGWAVTLLATFMLNHFHLFGLQQSFRPGSADAGSK-EFKTPLFYRFVRHPIQTGVVI 190
Query 185 AFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
A ATP M+ G L A+G YI + L FEERDL+ G Y DYR+ V L P
Sbjct 191 AMLATPDMSLGRALLAMGMLIYIGIGLFFEERDLVKEFGKTYEDYRQRVPPLFP 244
>gi|254466266|ref|ZP_05079677.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
gi|206687174|gb|EDZ47656.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
Length=247
Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 102/248 (42%), Positives = 141/248 (57%), Gaps = 16/248 (6%)
Query 3 RYLTIIYGAASYLVFLVAFGYAIGF---VGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVF 59
+ L + Y SY +F V F + F VGD+ P + P A +++L L+ +F
Sbjct 2 KSLVLAYALISYALFGVVFVWLAAFLHNVGDLRGPAS------RPAVDAALIDLALILLF 55
Query 60 AVQHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGR 119
V HSVMAR FKR WTR +PP+ ER+TYVL +S+ L L+ WQW+ MPA+IW V A
Sbjct 56 GVVHSVMARPAFKRVWTRIIPPASERATYVLQSSLLLGLIIWQWQPMPAIIWQVEGSA-- 113
Query 120 VALWALFW---LGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRH 176
+W + LG +L +TF++ HFE GL Q + R P F+ LYR VRH
Sbjct 114 --VWIFYGASALGAVIILVATFLLGHFEFVGLSQAWHNLRDTPTPPATFRTPSLYRVVRH 171
Query 177 PIMLGFVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSML 236
P+ G ++ ATP+MT GHL+F + YI + L+FEER LL G Y Y+R+V ML
Sbjct 172 PLQFGLLIMMVATPVMTLGHLIFVVAMAVYIAIGLRFEERALLREFGAAYAAYQRDVPML 231
Query 237 LPWPHRHT 244
+P P R +
Sbjct 232 IPNPFRRS 239
>gi|256823403|ref|YP_003147366.1| hypothetical protein Kkor_2188 [Kangiella koreensis DSM 16069]
gi|256796942|gb|ACV27598.1| conserved hypothetical protein [Kangiella koreensis DSM 16069]
Length=253
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/237 (36%), Positives = 135/237 (57%), Gaps = 0/237 (0%)
Query 2 KRYLTIIYGAASYLVFLVAFGYAIGFVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAV 61
K++L ++Y YL + + Y +GF+ ++ VP+ D + + ++V+N L+ +F +
Sbjct 3 KKFLILLYAIGGYLAGIASLLYLMGFIINIGVPKGSDDGESFSLLWSIVINATLITLFGL 62
Query 62 QHSVMARQGFKRWWTRFVPPSIERSTYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVA 121
HS+ AR FK+W + ++P +R+TY+ L + +L + W+ + IW V P
Sbjct 63 HHSLTARASFKKWISTYIPVPAQRATYLYLTGLMTAVLVFFWQPIDFTIWQVENPVITKT 122
Query 122 LWALFWLGWATVLTSTFMINHFELFGLRQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLG 181
+ +L+ L W ++ S+F I HF L GL Q + + K E F LY VRHPI
Sbjct 123 ILSLYLLFWVIMVLSSFPIGHFHLLGLAQAWDNFLNKRNAEPPFSRKFLYGLVRHPISSC 182
Query 182 FVVAFWATPMMTAGHLLFAIGATGYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
+++ W TP+MT GHL+F++G T YIL+A EE DL+ A+G QY Y++EV LP
Sbjct 183 WILIAWCTPVMTLGHLIFSLGVTAYILLATPHEENDLVKAIGPQYVKYQKEVPPFLP 239
>gi|153864085|ref|ZP_01997092.1| conserved hypothetical protein [Beggiatoa sp. SS]
gi|152146421|gb|EDN72909.1| conserved hypothetical protein [Beggiatoa sp. SS]
Length=160
Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 71/150 (48%), Positives = 101/150 (68%), Gaps = 0/150 (0%)
Query 89 VLLASVALLLLYWQWRTMPAVIWDVRQPAGRVALWALFWLGWATVLTSTFMINHFELFGL 148
+ ++S+AL+LL WQW+ +PAVIW V P G L+ LFW GW +T +IN F+L GL
Sbjct 1 MFISSLALILLIWQWQPLPAVIWHVENPIGYWTLFGLFWFGWLFSFFATSLINPFDLIGL 60
Query 149 RQVYLAWRGKPYTEIGFQAHLLYRWVRHPIMLGFVVAFWATPMMTAGHLLFAIGATGYIL 208
RQVYL W KPYT + FQ +Y+ +RHPIMLG ++ WATP M+ GHL+ AIG T YI
Sbjct 61 RQVYLYWHDKPYTALPFQVVSIYKSIRHPIMLGTIIGLWATPTMSVGHLILAIGFTVYIF 120
Query 209 VALQFEERDLLAALGDQYRDYRREVSMLLP 238
+ + FEE++++ G+ Y Y++ S ++P
Sbjct 121 IGIHFEEKNMVTDFGEVYEQYQQHTSKVIP 150
>gi|240171989|ref|ZP_04750648.1| hypothetical protein MkanA1_21925 [Mycobacterium kansasii ATCC
12478]
Length=300
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/214 (42%), Positives = 122/214 (58%), Gaps = 3/214 (1%)
Query 27 FVGDVVVPRTVDHAIAAPIGQAVVVNLVLLGVFAVQHSVMARQGFKRWWTRFVPPSIERS 86
F G +P+TVD G +++++++LL +FA QHS MAR K + TR++P ++ERS
Sbjct 46 FAGGWWLPKTVDAGAHLSAGPSLLIDVLLLALFAAQHSGMARPSVKAFVTRWMPTALERS 105
Query 87 TYVLLASVALLLLYWQWRTMPAVIWDVRQPAGRVALWALFWLGWATVLTSTFMINHFELF 146
YV + S+A+ +L W+ +P IW G L A FW G A V +T ++NHF L
Sbjct 106 LYVFMTSLAVWVLCLGWQPLPGHIWSAGG-IGSAVLDAGFWSGVALVYVATLLLNHFHLL 164
Query 147 GLRQVYLAW--RGKPYTEIGFQAHLLYRWVRHPIMLGFVVAFWATPMMTAGHLLFAIGAT 204
G+ Q Y + R T Q H YR VRHP+M G ++ FW+ TAGHLL+A G T
Sbjct 165 GVSQAYRRYVARVSDATCDRLQVHGPYRLVRHPLMTGLLICFWSASTFTAGHLLWATGLT 224
Query 205 GYILVALQFEERDLLAALGDQYRDYRREVSMLLP 238
GYIL+ EERDL+A G YR Y V +P
Sbjct 225 GYILLGTYLEERDLVARFGTAYRSYAARVPAFIP 258
Lambda K H
0.332 0.142 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 340053351120
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40