BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3241c
Length=214
Score E
Sequences producing significant alignments: (Bits) Value
gi|308376039|ref|ZP_07445902.2| hypothetical protein TMGG_02789 ... 437 6e-121
gi|15842830|ref|NP_337867.1| S30AE family protein [Mycobacterium... 436 1e-120
gi|31794421|ref|NP_856914.1| hypothetical protein Mb3269c [Mycob... 435 3e-120
gi|289751935|ref|ZP_06511313.1| conserved hypothetical protein [... 387 5e-106
gi|15827339|ref|NP_301602.1| hypothetical protein ML0778 [Mycoba... 376 1e-102
gi|118618054|ref|YP_906386.1| hypothetical protein MUL_2577 [Myc... 375 2e-102
gi|240173373|ref|ZP_04752031.1| hypothetical protein MkanA1_2893... 357 6e-97
gi|118464264|ref|YP_883347.1| S30AE family protein [Mycobacteriu... 331 4e-89
gi|41409453|ref|NP_962289.1| hypothetical protein MAP3355c [Myco... 329 1e-88
gi|296168966|ref|ZP_06850634.1| S30AE family protein [Mycobacter... 329 1e-88
gi|254822989|ref|ZP_05227990.1| hypothetical protein MintA_23879... 326 2e-87
gi|118473146|ref|YP_886244.1| S30AE family protein [Mycobacteriu... 321 4e-86
gi|342861441|ref|ZP_08718088.1| S30AE family protein [Mycobacter... 318 4e-85
gi|145225284|ref|YP_001135962.1| sigma 54 modulation protein/rib... 312 2e-83
gi|315445581|ref|YP_004078460.1| 30S ribosomal protein S30P;sigm... 312 2e-83
gi|120402760|ref|YP_952589.1| sigma 54 modulation protein/riboso... 305 3e-81
gi|108798323|ref|YP_638520.1| sigma 54 modulation protein/riboso... 297 6e-79
gi|111023291|ref|YP_706263.1| hypothetical protein RHA1_ro06328 ... 293 1e-77
gi|333991612|ref|YP_004524226.1| hypothetical protein JDM601_297... 291 3e-77
gi|226365798|ref|YP_002783581.1| hypothetical protein ROP_63890 ... 289 1e-76
gi|325675699|ref|ZP_08155383.1| S30AE family protein [Rhodococcu... 288 3e-76
gi|312140671|ref|YP_004008007.1| sigma 54 modulation/s30ea ribos... 288 4e-76
gi|226305659|ref|YP_002765619.1| hypothetical protein RER_21720 ... 286 1e-75
gi|289444817|ref|ZP_06434561.1| S30AE family protein [Mycobacter... 276 2e-72
gi|54026580|ref|YP_120822.1| hypothetical protein nfa46070 [Noca... 273 1e-71
gi|333921445|ref|YP_004495026.1| S30AE family protein [Amycolici... 254 5e-66
gi|262203502|ref|YP_003274710.1| ribosomal subunit interface pro... 254 6e-66
gi|343927667|ref|ZP_08767135.1| hypothetical protein GOALK_097_0... 250 8e-65
gi|296138808|ref|YP_003646051.1| sigma 54 modulation protein/30S... 249 1e-64
gi|256380296|ref|YP_003103956.1| sigma 54 modulation protein/30S... 226 1e-57
gi|300789804|ref|YP_003770095.1| sigma 54 modulation protein/rib... 225 4e-57
gi|326383267|ref|ZP_08204955.1| ribosomal subunit interface prot... 224 6e-57
gi|134102877|ref|YP_001108538.1| S30AE family protein [Saccharop... 221 7e-56
gi|126215786|gb|ABN81013.1| Yvy [Rhodococcus opacus] 220 9e-56
gi|302530014|ref|ZP_07282356.1| S30AE family protein [Streptomyc... 219 2e-55
gi|257057060|ref|YP_003134892.1| 30S ribosomal protein S30P/sigm... 218 5e-55
gi|159036563|ref|YP_001535816.1| sigma 54 modulation protein/rib... 217 1e-54
gi|315502062|ref|YP_004080949.1| sigma 54 modulation protein/rib... 216 2e-54
gi|302865514|ref|YP_003834151.1| ribosomal subunit interface pro... 215 3e-54
gi|317508039|ref|ZP_07965727.1| sigma 54 modulation protein/S30E... 215 4e-54
gi|238063014|ref|ZP_04607723.1| 30S ribosomal protein S30EA [Mic... 214 7e-54
gi|296394607|ref|YP_003659491.1| ribosomal subunit interface pro... 211 5e-53
gi|291299364|ref|YP_003510642.1| sigma 54 modulation protein/30S... 209 2e-52
gi|145593528|ref|YP_001157825.1| ribosomal subunit interface pro... 206 1e-51
gi|284992660|ref|YP_003411214.1| sigma 54 modulation protein/30S... 205 4e-51
gi|340795128|ref|YP_004760591.1| hypothetical protein CVAR_2168 ... 204 5e-51
gi|169630663|ref|YP_001704312.1| hypothetical protein MAB_3583c ... 204 6e-51
gi|330465924|ref|YP_004403667.1| sigma 54 modulation protein/rib... 202 2e-50
gi|300779610|ref|ZP_07089466.1| ribosome-associated inhibitor pr... 200 1e-49
gi|213964916|ref|ZP_03393115.1| S30AE family protein [Corynebact... 199 2e-49
>gi|308376039|ref|ZP_07445902.2| hypothetical protein TMGG_02789 [Mycobacterium tuberculosis SUMu007]
gi|308344556|gb|EFP33407.1| hypothetical protein TMGG_02789 [Mycobacterium tuberculosis SUMu007]
Length=222
Score = 437 bits (1123), Expect = 6e-121, Method: Compositional matrix adjust.
Identities = 214/214 (100%), Positives = 214/214 (100%), Gaps = 0/214 (0%)
Query 1 VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR 60
VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR
Sbjct 9 VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR 68
Query 61 RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP 120
RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP
Sbjct 69 RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP 128
Query 121 VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME 180
VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME
Sbjct 129 VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME 188
Query 181 LVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
LVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA
Sbjct 189 LVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 222
>gi|15842830|ref|NP_337867.1| S30AE family protein [Mycobacterium tuberculosis CDC1551]
gi|298526717|ref|ZP_07014126.1| S30AE family protein [Mycobacterium tuberculosis 94_M4241A]
gi|306777570|ref|ZP_07415907.1| hypothetical protein TMAG_02694 [Mycobacterium tuberculosis SUMu001]
24 more sequence titles
Length=219
Score = 436 bits (1121), Expect = 1e-120, Method: Compositional matrix adjust.
Identities = 214/214 (100%), Positives = 214/214 (100%), Gaps = 0/214 (0%)
Query 1 VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR 60
VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR
Sbjct 6 VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR 65
Query 61 RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP 120
RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP
Sbjct 66 RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP 125
Query 121 VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME 180
VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME
Sbjct 126 VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME 185
Query 181 LVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
LVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA
Sbjct 186 LVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 219
>gi|31794421|ref|NP_856914.1| hypothetical protein Mb3269c [Mycobacterium bovis AF2122/97]
gi|121639130|ref|YP_979354.1| hypothetical protein BCG_3270c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148663104|ref|YP_001284627.1| S30AE family protein [Mycobacterium tuberculosis H37Ra]
49 more sequence titles
Length=214
Score = 435 bits (1118), Expect = 3e-120, Method: Compositional matrix adjust.
Identities = 213/214 (99%), Positives = 214/214 (100%), Gaps = 0/214 (0%)
Query 1 VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR 60
+DSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR
Sbjct 1 MDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR 60
Query 61 RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP 120
RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP
Sbjct 61 RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP 120
Query 121 VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME 180
VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME
Sbjct 121 VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME 180
Query 181 LVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
LVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA
Sbjct 181 LVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
>gi|289751935|ref|ZP_06511313.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289692522|gb|EFD59951.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=197
Score = 387 bits (995), Expect = 5e-106, Method: Compositional matrix adjust.
Identities = 190/192 (99%), Positives = 190/192 (99%), Gaps = 0/192 (0%)
Query 1 VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR 60
VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR
Sbjct 6 VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR 65
Query 61 RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP 120
RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP
Sbjct 66 RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP 125
Query 121 VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME 180
VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHP KPMSVDDAL QME
Sbjct 126 VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPPKPMSVDDALSQME 185
Query 181 LVGHDFFLFYDK 192
LVGHDFFLFYDK
Sbjct 186 LVGHDFFLFYDK 197
>gi|15827339|ref|NP_301602.1| hypothetical protein ML0778 [Mycobacterium leprae TN]
gi|221229817|ref|YP_002503233.1| hypothetical protein MLBr_00778 [Mycobacterium leprae Br4923]
gi|13092888|emb|CAC30287.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932924|emb|CAR70872.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=229
Score = 376 bits (965), Expect = 1e-102, Method: Compositional matrix adjust.
Identities = 189/224 (85%), Positives = 196/224 (88%), Gaps = 10/224 (4%)
Query 1 VDSGQVL----------AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLF 50
V GQVL EP N EIVFKGRNVEIPDHFRI+VSQ+LARLERFDRTIYLF
Sbjct 6 VGFGQVLNSAPVPSDEQVEPMPNVEIVFKGRNVEIPDHFRIHVSQRLARLERFDRTIYLF 65
Query 51 DVELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDR 110
DVELDHERNRRQRK CQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDR
Sbjct 66 DVELDHERNRRQRKFCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDR 125
Query 111 RKVHYGDKTPVSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPM 170
RKVHYGDKTPVS+AEATAV +PE FNT PA AHDH GAV + EPGRIVRTKEHPAKPM
Sbjct 126 RKVHYGDKTPVSVAEATAVAVSPEKAFNTEPAPAHDHGGAVTDYEPGRIVRTKEHPAKPM 185
Query 171 SVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
SVDDALY+MELVGHDFFLF DK +ERPSVVYRRHAYDYGLIRLA
Sbjct 186 SVDDALYEMELVGHDFFLFLDKQSERPSVVYRRHAYDYGLIRLA 229
>gi|118618054|ref|YP_906386.1| hypothetical protein MUL_2577 [Mycobacterium ulcerans Agy99]
gi|183981326|ref|YP_001849617.1| hypothetical protein MMAR_1304 [Mycobacterium marinum M]
gi|118570164|gb|ABL04915.1| conserved protein [Mycobacterium ulcerans Agy99]
gi|183174652|gb|ACC39762.1| conserved protein [Mycobacterium marinum M]
Length=229
Score = 375 bits (963), Expect = 2e-102, Method: Compositional matrix adjust.
Identities = 183/224 (82%), Positives = 199/224 (89%), Gaps = 10/224 (4%)
Query 1 VDSGQVL----------AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLF 50
VDS QVL EP++ AEIVFKGRNVEIPDHFR YVSQKL+RLERFDRTIYLF
Sbjct 6 VDSDQVLDQAPAQSGQPEEPQATAEIVFKGRNVEIPDHFRTYVSQKLSRLERFDRTIYLF 65
Query 51 DVELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDR 110
DVELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVK+ESRLRR KDR
Sbjct 66 DVELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKVESRLRRTKDR 125
Query 111 RKVHYGDKTPVSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPM 170
RKVHYGDKTPVS+AEATA V APE F PAE H+HDGAV++ +PGR+VRTKEHPAKPM
Sbjct 126 RKVHYGDKTPVSVAEATATVTAPEMAFAAEPAEPHEHDGAVLDHQPGRVVRTKEHPAKPM 185
Query 171 SVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
SVDDALY+MELVGHDFFLF+D++TERP+VVYRRH YDYGLIRL+
Sbjct 186 SVDDALYEMELVGHDFFLFFDQETERPTVVYRRHGYDYGLIRLS 229
>gi|240173373|ref|ZP_04752031.1| hypothetical protein MkanA1_28931 [Mycobacterium kansasii ATCC
12478]
Length=229
Score = 357 bits (916), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 185/224 (83%), Positives = 199/224 (89%), Gaps = 10/224 (4%)
Query 1 VDSGQVL----------AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLF 50
VDS Q++ AEP++ AEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLF
Sbjct 6 VDSDQIVDQAPAETDEQAEPQATAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLF 65
Query 51 DVELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDR 110
DVELDHERNRRQRKSCQRVE+TARGRGPVVRGEACADSFYAALESAV KLE+RLRR KDR
Sbjct 66 DVELDHERNRRQRKSCQRVEVTARGRGPVVRGEACADSFYAALESAVGKLENRLRRSKDR 125
Query 111 RKVHYGDKTPVSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPM 170
RKVHYGDKTPVSLAEATA P PE F+ PAE H+HDGA ++ EPGRIVR KEHPAKPM
Sbjct 126 RKVHYGDKTPVSLAEATAAAPPPERAFDAEPAEPHEHDGAELDHEPGRIVRVKEHPAKPM 185
Query 171 SVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
SVDDALY+MELVGHDFFLF+DK+TERP+VVYRRHAYDYGLIRLA
Sbjct 186 SVDDALYEMELVGHDFFLFFDKETERPTVVYRRHAYDYGLIRLA 229
>gi|118464264|ref|YP_883347.1| S30AE family protein [Mycobacterium avium 104]
gi|254776641|ref|ZP_05218157.1| S30AE family protein [Mycobacterium avium subsp. avium ATCC 25291]
gi|118165551|gb|ABK66448.1| S30AE family protein [Mycobacterium avium 104]
Length=226
Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 172/229 (76%), Positives = 186/229 (82%), Gaps = 18/229 (7%)
Query 1 VDSGQVL----------AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLF 50
+DSGQ+L +P + AE+VFKGRNVEIPDH+R+YVSQKLARLERFDR+IYLF
Sbjct 1 MDSGQILDQSSPSTDGQGQPTATAEVVFKGRNVEIPDHYRLYVSQKLARLERFDRSIYLF 60
Query 51 DVELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDR 110
DVEL H NRRQRKSCQRVEITARGRGPV R EACADSFYAA ESAV KLE+RLRR KDR
Sbjct 61 DVELKHAPNRRQRKSCQRVEITARGRGPVSRAEACADSFYAAFESAVDKLENRLRRVKDR 120
Query 111 RKVHYGDKTPVSLAEATAVVP-APENGFNTRPAEAHDHDG----AVVEREPGRIVRTKEH 165
RKVHYGDKTPVSLA ATAV P AP + P A DHDG ++REPGRIVRTKEH
Sbjct 121 RKVHYGDKTPVSLAAATAVPPRAP---LPSEPQPAADHDGVEPDTELDREPGRIVRTKEH 177
Query 166 PAKPMSVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
PA PM+VDDALY+MELVGHDFFLF DK TERP VVYRRHAYDYGLIRLA
Sbjct 178 PAIPMTVDDALYEMELVGHDFFLFQDKQTERPCVVYRRHAYDYGLIRLA 226
>gi|41409453|ref|NP_962289.1| hypothetical protein MAP3355c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398284|gb|AAS05905.1| hypothetical protein MAP_3355c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336459550|gb|EGO38486.1| ribosomal subunit interface protein [Mycobacterium avium subsp.
paratuberculosis S397]
Length=231
Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 172/229 (76%), Positives = 185/229 (81%), Gaps = 18/229 (7%)
Query 1 VDSGQVL----------AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLF 50
VDSGQ+L +P + AE+VFKGRNVEIPDH+R+YVSQKLARLERFDR+IYLF
Sbjct 6 VDSGQILDQSSPSTDGQGQPTATAEVVFKGRNVEIPDHYRLYVSQKLARLERFDRSIYLF 65
Query 51 DVELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDR 110
DVEL H NRRQRKSCQRVEITARGRGPV R EACADSFYAA ESAV KLE+RLRR KDR
Sbjct 66 DVELKHAPNRRQRKSCQRVEITARGRGPVSRAEACADSFYAAFESAVDKLENRLRRVKDR 125
Query 111 RKVHYGDKTPVSLAEATAVVP-APENGFNTRPAEAHDHDG----AVVEREPGRIVRTKEH 165
RKVHYGDKTPVSLA ATAV P AP + P A DHDG ++REPGRIVRTKEH
Sbjct 126 RKVHYGDKTPVSLAAATAVPPHAP---LPSEPQPAADHDGVEPDTELDREPGRIVRTKEH 182
Query 166 PAKPMSVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
PA PM+VDDALY+MELVG DFFLF DK TERP VVYRRHAYDYGLIRLA
Sbjct 183 PAIPMTVDDALYEMELVGRDFFLFQDKQTERPCVVYRRHAYDYGLIRLA 231
>gi|296168966|ref|ZP_06850634.1| S30AE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896365|gb|EFG76019.1| S30AE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=229
Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 169/224 (76%), Positives = 183/224 (82%), Gaps = 10/224 (4%)
Query 1 VDSGQVL----------AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLF 50
VDSGQ+L +P + AE+VFKGRNVEIPDH+R+YVSQKLARLERFDR+IYLF
Sbjct 6 VDSGQILDQPPTQTDGQVQPTTTAEVVFKGRNVEIPDHYRLYVSQKLARLERFDRSIYLF 65
Query 51 DVELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDR 110
DVEL H NRRQRKSCQRVEITARGRGPV R EACA+SFYAA ESAV KLE+RLRR KDR
Sbjct 66 DVELKHAPNRRQRKSCQRVEITARGRGPVSRAEACANSFYAAFESAVDKLENRLRRVKDR 125
Query 111 RKVHYGDKTPVSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPM 170
RKVHYGDKTPVSLA ATAVVP P P H DGA + EPGRIVRTKEHPA PM
Sbjct 126 RKVHYGDKTPVSLAAATAVVPPPPRERLPEPPAEHGVDGAETDHEPGRIVRTKEHPATPM 185
Query 171 SVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
+VDDALY+MELVGHDFFLF+DK TERP VVYRRHAYDYGLIRL+
Sbjct 186 TVDDALYEMELVGHDFFLFHDKQTERPCVVYRRHAYDYGLIRLS 229
>gi|254822989|ref|ZP_05227990.1| hypothetical protein MintA_23879 [Mycobacterium intracellulare
ATCC 13950]
Length=231
Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/226 (75%), Positives = 183/226 (81%), Gaps = 12/226 (5%)
Query 1 VDSGQVL----------AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLF 50
VDSGQ+L A+P + A++VFKGRNVEIPDH+R+YVSQKLARLERFDR+IYLF
Sbjct 6 VDSGQILDQPPSAPDGQAQPTTTADVVFKGRNVEIPDHYRLYVSQKLARLERFDRSIYLF 65
Query 51 DVELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDR 110
DVEL H NRRQRKSCQRVEITARGRGPV R EACA+SFYAA ESAV KLESRLRR KDR
Sbjct 66 DVELKHAPNRRQRKSCQRVEITARGRGPVSRAEACANSFYAAFESAVDKLESRLRRVKDR 125
Query 111 RKVHYGDKTPVSLAEATAVVPA-PENGFNTRPAE-AHDHDGAVVEREPGRIVRTKEHPAK 168
RKVHYGDKTPVSLA ATAV P P G P + +DG + EPGRIVRTKEHPA
Sbjct 126 RKVHYGDKTPVSLAAATAVPPPEPARGAPEAPVDHGASNDGVDQDHEPGRIVRTKEHPAT 185
Query 169 PMSVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
PM+VDDALY+MELVGHDFFLF+DK TERP VVYRRHAYDYGLIRL
Sbjct 186 PMTVDDALYEMELVGHDFFLFHDKHTERPCVVYRRHAYDYGLIRLG 231
>gi|118473146|ref|YP_886244.1| S30AE family protein [Mycobacterium smegmatis str. MC2 155]
gi|118174433|gb|ABK75329.1| S30AE family protein [Mycobacterium smegmatis str. MC2 155]
Length=230
Score = 321 bits (823), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 158/204 (78%), Positives = 176/204 (87%), Gaps = 1/204 (0%)
Query 11 KSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVE 70
+ +AE+V KGRNVE+PDHFR YVS+KL+RLERFD+TIYLFDVELDHERNRRQRK+CQ VE
Sbjct 28 RPHAEVVVKGRNVEVPDHFRTYVSEKLSRLERFDKTIYLFDVELDHERNRRQRKNCQHVE 87
Query 71 ITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVV 130
ITARGRGPVVRGEACADSFY A ESAV KLE RLRR KDRRK+HYGDKTPVSLAEATA
Sbjct 88 ITARGRGPVVRGEACADSFYTAFESAVQKLEGRLRRAKDRRKIHYGDKTPVSLAEATAKD 147
Query 131 PAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLFY 190
P + EA +DG V E EPGRIVR K+HPA PM+VDDALY+MELVGHDFFLF+
Sbjct 148 PLAGLDVSREDGEARYNDG-VAEHEPGRIVRIKDHPATPMTVDDALYEMELVGHDFFLFH 206
Query 191 DKDTERPSVVYRRHAYDYGLIRLA 214
DK+T+RPSVVYRRHA+DYGLIRLA
Sbjct 207 DKETDRPSVVYRRHAFDYGLIRLA 230
>gi|342861441|ref|ZP_08718088.1| S30AE family protein [Mycobacterium colombiense CECT 3035]
gi|342130930|gb|EGT84219.1| S30AE family protein [Mycobacterium colombiense CECT 3035]
Length=222
Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 166/223 (75%), Positives = 184/223 (83%), Gaps = 10/223 (4%)
Query 1 VDSGQVL---------AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFD 51
+DSGQ+L A P + A++VFKGRNVEIPDH+R+YVSQKLARLERFDR+IYLFD
Sbjct 1 MDSGQILDQPPVTDGQAPPTTTADVVFKGRNVEIPDHYRLYVSQKLARLERFDRSIYLFD 60
Query 52 VELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRR 111
VEL H NRRQRKSCQRVEITARGRGPV R EACA+SFYAA ESAV KLE+RLRR KDRR
Sbjct 61 VELKHAPNRRQRKSCQRVEITARGRGPVTRAEACANSFYAAFESAVDKLENRLRRVKDRR 120
Query 112 KVHYGDKTPVSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMS 171
KVHYGDKTPVSLA ATAV P +G + A + +HDG + EPGRIVRTKEHPA PM+
Sbjct 121 KVHYGDKTPVSLAAATAVPPPAPSGTAAQ-APSAEHDGTESDHEPGRIVRTKEHPATPMT 179
Query 172 VDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
VDDALY+MELVGHDFFLF+DK TERP VVYRRHAYDYGLIRL
Sbjct 180 VDDALYEMELVGHDFFLFHDKQTERPCVVYRRHAYDYGLIRLG 222
>gi|145225284|ref|YP_001135962.1| sigma 54 modulation protein/ribosomal protein S30EA [Mycobacterium
gilvum PYR-GCK]
gi|145217770|gb|ABP47174.1| SSU ribosomal protein S30P / sigma 54 modulation protein [Mycobacterium
gilvum PYR-GCK]
Length=236
Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/202 (75%), Positives = 174/202 (87%), Gaps = 2/202 (0%)
Query 13 NAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEIT 72
+AE+V KGRNVE+PDHFR+YV++KLARLERFDRTIYLFDVELDHE+NRRQRK+CQ VEIT
Sbjct 37 SAEVVVKGRNVEVPDHFRLYVAEKLARLERFDRTIYLFDVELDHEKNRRQRKNCQHVEIT 96
Query 73 ARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPA 132
ARGRGPVVRGEACADSFY A E+A KLE+RLR+ KDRRK+HYGDKTPVSL EATA+
Sbjct 97 ARGRGPVVRGEACADSFYGAFEAAASKLEARLRKSKDRRKIHYGDKTPVSLHEATALDRL 156
Query 133 PENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLFYDK 192
+ +P E + V + EPGRIVRTKEHPA PM+VDDALY+MELVGHDFFLF+DK
Sbjct 157 --DAAFAKPTETSAVEAPVDDHEPGRIVRTKEHPATPMTVDDALYEMELVGHDFFLFHDK 214
Query 193 DTERPSVVYRRHAYDYGLIRLA 214
+++RP VVYRRHAYDYGLI+LA
Sbjct 215 ESDRPCVVYRRHAYDYGLIKLA 236
>gi|315445581|ref|YP_004078460.1| 30S ribosomal protein S30P;sigma 54 modulation protein [Mycobacterium
sp. Spyr1]
gi|315263884|gb|ADU00626.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Mycobacterium
sp. Spyr1]
Length=227
Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/202 (75%), Positives = 174/202 (87%), Gaps = 2/202 (0%)
Query 13 NAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEIT 72
+AE+V KGRNVE+PDHFR+YV++KLARLERFDRTIYLFDVELDHE+NRRQRK+CQ VEIT
Sbjct 28 SAEVVVKGRNVEVPDHFRLYVAEKLARLERFDRTIYLFDVELDHEKNRRQRKNCQHVEIT 87
Query 73 ARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPA 132
ARGRGPVVRGEACADSFY A E+A KLE+RLR+ KDRRK+HYGDKTPVSL EATA+
Sbjct 88 ARGRGPVVRGEACADSFYGAFEAAASKLEARLRKSKDRRKIHYGDKTPVSLHEATALDRL 147
Query 133 PENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLFYDK 192
+ +P E + V + EPGRIVRTKEHPA PM+VDDALY+MELVGHDFFLF+DK
Sbjct 148 --DAAFAKPTETSAVEAPVDDHEPGRIVRTKEHPATPMTVDDALYEMELVGHDFFLFHDK 205
Query 193 DTERPSVVYRRHAYDYGLIRLA 214
+++RP VVYRRHAYDYGLI+LA
Sbjct 206 ESDRPCVVYRRHAYDYGLIKLA 227
>gi|120402760|ref|YP_952589.1| sigma 54 modulation protein/ribosomal protein S30EA [Mycobacterium
vanbaalenii PYR-1]
gi|119955578|gb|ABM12583.1| SSU ribosomal protein S30P / sigma 54 modulation protein [Mycobacterium
vanbaalenii PYR-1]
Length=250
Score = 305 bits (781), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/212 (73%), Positives = 173/212 (82%), Gaps = 7/212 (3%)
Query 8 AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQ 67
+EP AE+ GRNVE+PDHFR YV++KL+RLERFDRT+YLFDVEL HE+NRRQRK+CQ
Sbjct 41 SEPTPKAEVAVTGRNVEVPDHFRSYVAEKLSRLERFDRTLYLFDVELYHEKNRRQRKNCQ 100
Query 68 RVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEAT 127
VEITA+GRGPVVRGEACADSFYAALESAV KLE RLR+ KDRRK+HYGDKTP SL EA
Sbjct 101 HVEITAKGRGPVVRGEACADSFYAALESAVSKLEGRLRKSKDRRKIHYGDKTPRSLREAC 160
Query 128 AVVPAPENGFNTRPAEAH-DHDGAVV----EREPGRIVRTKEHPAKPMSVDDALYQMELV 182
+ P G T PAEA DG E EPGRIVR KEHPA PM+VDDALY+MELV
Sbjct 161 S--PEQLEGVFTPPAEASLSLDGQSAQPLDEHEPGRIVRVKEHPATPMTVDDALYEMELV 218
Query 183 GHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
GHDFFLF+DK+++RP VVYRRHAYDYGLI+LA
Sbjct 219 GHDFFLFHDKESDRPCVVYRRHAYDYGLIKLA 250
>gi|108798323|ref|YP_638520.1| sigma 54 modulation protein/ribosomal protein S30EA [Mycobacterium
sp. MCS]
gi|119867420|ref|YP_937372.1| sigma 54 modulation protein/ribosomal protein S30EA [Mycobacterium
sp. KMS]
gi|126433988|ref|YP_001069679.1| sigma 54 modulation protein/ribosomal protein S30EA [Mycobacterium
sp. JLS]
gi|108768742|gb|ABG07464.1| sigma 54 modulation protein / SSU ribosomal protein S30P [Mycobacterium
sp. MCS]
gi|119693509|gb|ABL90582.1| sigma 54 modulation protein / SSU ribosomal protein S30P [Mycobacterium
sp. KMS]
gi|126233788|gb|ABN97188.1| sigma 54 modulation protein / SSU ribosomal protein S30P [Mycobacterium
sp. JLS]
Length=226
Score = 297 bits (761), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 156/206 (76%), Positives = 174/206 (85%), Gaps = 7/206 (3%)
Query 13 NAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEIT 72
NAE+V KGRNVEIPDHFR YV++KL RLERFDRTIYLFDVELDHE+NRRQRK+CQ VEIT
Sbjct 24 NAEVVVKGRNVEIPDHFRTYVAEKLTRLERFDRTIYLFDVELDHEKNRRQRKNCQHVEIT 83
Query 73 ARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPA 132
ARGRGPVVRGEACADSFYAA E+AV KLE+RLRR KDRRK+HYGDK PVS+AEATA A
Sbjct 84 ARGRGPVVRGEACADSFYAAFEAAVSKLENRLRRSKDRRKIHYGDKRPVSVAEATAATAA 143
Query 133 PENGFNTRPAEAHDH---DGAVV-EREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFL 188
E PA A D DG + + EPGRIVR K+HPA PM+VDDAL QMELVGHDFFL
Sbjct 144 IE---QETPAPAEDTGLPDGLTLDDHEPGRIVRVKDHPATPMTVDDALSQMELVGHDFFL 200
Query 189 FYDKDTERPSVVYRRHAYDYGLIRLA 214
F+DK+T++ +VVYRRHAYDYGLIRLA
Sbjct 201 FHDKETDKATVVYRRHAYDYGLIRLA 226
>gi|111023291|ref|YP_706263.1| hypothetical protein RHA1_ro06328 [Rhodococcus jostii RHA1]
gi|110822821|gb|ABG98105.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=225
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/203 (72%), Positives = 170/203 (84%), Gaps = 4/203 (1%)
Query 13 NAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEIT 72
NAEIV KGRNVE+PDHFR+YVS+KL+RLERFD +I+LFDVEL HE NRRQRK+CQRVEIT
Sbjct 26 NAEIVVKGRNVEVPDHFRVYVSEKLSRLERFDPSIFLFDVELHHEPNRRQRKNCQRVEIT 85
Query 73 ARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPA 132
ARG+GPV R EACADSFYAA ES KLESRLRR KDR+KVHYG+KTPVS+AEATA + A
Sbjct 86 ARGKGPVARAEACADSFYAAFESVTAKLESRLRRTKDRKKVHYGEKTPVSVAEATAAL-A 144
Query 133 PENGFNTRPAEAHDHDGAVV-EREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLFYD 191
++ P + DG + E PG +VRTKEH A PM+VDDALY+MELVGHDFFLF+D
Sbjct 145 EDDSLGISPDIS--LDGQMPDEHTPGHVVRTKEHKATPMTVDDALYEMELVGHDFFLFHD 202
Query 192 KDTERPSVVYRRHAYDYGLIRLA 214
K+++R +VVYRRHA+DYGLIRLA
Sbjct 203 KESDRATVVYRRHAFDYGLIRLA 225
>gi|333991612|ref|YP_004524226.1| hypothetical protein JDM601_2972 [Mycobacterium sp. JDM601]
gi|333487580|gb|AEF36972.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=231
Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/212 (71%), Positives = 169/212 (80%), Gaps = 6/212 (2%)
Query 8 AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQ 67
+E + AEIV KGRNVEIPDHFR+YV+QKLARLER DR+I LFDVEL H NRRQRKSCQ
Sbjct 19 SEQSTGAEIVVKGRNVEIPDHFRVYVAQKLARLERLDRSIRLFDVELKHANNRRQRKSCQ 78
Query 68 RVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEAT 127
+++ITA GRGPV+RGEA ADSFYAA E+A+ +LE RLRR KDRR V YGDKTP+S+AEAT
Sbjct 79 QIDITAHGRGPVIRGEARADSFYAAFEAAIDRLEGRLRRHKDRRNVSYGDKTPLSVAEAT 138
Query 128 -AVVPAPE---NGFNTRPAEAHDHDGAVVE--REPGRIVRTKEHPAKPMSVDDALYQMEL 181
A PE FN D DG+ EPGRIVRTKEH A PMSVDDALY+MEL
Sbjct 139 GATTLDPEFLATAFNRDGTAEPDRDGSAPTHAHEPGRIVRTKEHTATPMSVDDALYEMEL 198
Query 182 VGHDFFLFYDKDTERPSVVYRRHAYDYGLIRL 213
VGHDFFLF+DK+T++PSVVYRRHAYDYGLIRL
Sbjct 199 VGHDFFLFHDKETDQPSVVYRRHAYDYGLIRL 230
>gi|226365798|ref|YP_002783581.1| hypothetical protein ROP_63890 [Rhodococcus opacus B4]
gi|226244288|dbj|BAH54636.1| hypothetical protein [Rhodococcus opacus B4]
Length=225
Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/218 (68%), Positives = 174/218 (80%), Gaps = 7/218 (3%)
Query 1 VDSGQVLAEPKSN---AEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHE 57
VD A+ K++ AEIV KGRNVE+PDHFR+YVS+KL+RLERFD +I+LFDVEL HE
Sbjct 11 VDDRTTEAQEKTDTPTAEIVVKGRNVEVPDHFRVYVSEKLSRLERFDPSIFLFDVELQHE 70
Query 58 RNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGD 117
NRRQRK+CQRVEITARG+GPV R EA ADSFYAA ES KLESRLRR KDR+KVHYG+
Sbjct 71 PNRRQRKNCQRVEITARGKGPVARAEASADSFYAAFESVTAKLESRLRRTKDRKKVHYGE 130
Query 118 KTPVSLAEATAVVPAPENGFNTRPAEAHDHDGAVVERE-PGRIVRTKEHPAKPMSVDDAL 176
KTPVS+AEATA + A + P + DG V E PG +VRTKEH A PM+VDDAL
Sbjct 131 KTPVSVAEATAAL-AEDESLGISPDIS--LDGQVSEEHTPGHVVRTKEHTATPMTVDDAL 187
Query 177 YQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
Y+MELVGHDFFLF+DK++++ +VVYRRHA+DYGLIRLA
Sbjct 188 YEMELVGHDFFLFHDKESDKATVVYRRHAFDYGLIRLA 225
>gi|325675699|ref|ZP_08155383.1| S30AE family protein [Rhodococcus equi ATCC 33707]
gi|325553670|gb|EGD23348.1| S30AE family protein [Rhodococcus equi ATCC 33707]
Length=221
Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 146/213 (69%), Positives = 168/213 (79%), Gaps = 24/213 (11%)
Query 12 SNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEI 71
+NAEIV KGRNVE+P+HFR+YVS+KLARLERFD TI+ FDVEL HERNRRQ KSCQRVEI
Sbjct 23 NNAEIVVKGRNVEVPEHFRVYVSEKLARLERFDPTIFHFDVELQHERNRRQAKSCQRVEI 82
Query 72 TARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVP 131
TARG+GPV R EA ADSFYAA ES KLESRLRR KDRRKVHYG+KTPVS+A+ATA +
Sbjct 83 TARGKGPVARAEASADSFYAAFESVTAKLESRLRRTKDRRKVHYGEKTPVSVAQATAAL- 141
Query 132 APENGFNTRPAEAHDHDGAVVERE----------PGRIVRTKEHPAKPMSVDDALYQMEL 181
A D D ++R+ PG+IVRTK H A PM+VDDALY+MEL
Sbjct 142 ------------AQD-DSLAIDRDLSLDGEAPPGPGQIVRTKVHSASPMTVDDALYEMEL 188
Query 182 VGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
VGHDF+LF+DK+T+RPSVVYRRHA+DYGLIRLA
Sbjct 189 VGHDFYLFHDKETDRPSVVYRRHAFDYGLIRLA 221
>gi|312140671|ref|YP_004008007.1| sigma 54 modulation/s30ea ribosomal protein [Rhodococcus equi
103S]
gi|311890010|emb|CBH49328.1| sigma 54 modulation/S30EA ribosomal protein [Rhodococcus equi
103S]
Length=221
Score = 288 bits (737), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 146/213 (69%), Positives = 168/213 (79%), Gaps = 24/213 (11%)
Query 12 SNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEI 71
+NAEIV KGRNVE+P+HFR+YVS+KLARLERFD TI+ FDVEL HERNRRQ KSCQRVEI
Sbjct 23 NNAEIVVKGRNVEVPEHFRVYVSEKLARLERFDPTIFHFDVELQHERNRRQAKSCQRVEI 82
Query 72 TARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVP 131
TARG+GPV R EA ADSFYAA ES KLESRLRR KDRRKVHYG+KTPVS+A+ATA +
Sbjct 83 TARGKGPVARAEASADSFYAAFESVTAKLESRLRRTKDRRKVHYGEKTPVSVAQATAAL- 141
Query 132 APENGFNTRPAEAHDHDGAVVERE----------PGRIVRTKEHPAKPMSVDDALYQMEL 181
A D D ++R+ PG+IVRTK H A PM+VDDALY+MEL
Sbjct 142 ------------AQD-DSLAIDRDLSLDGEAPPGPGQIVRTKVHSASPMTVDDALYEMEL 188
Query 182 VGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
VGHDF+LF+DK+T+RPSVVYRRHA+DYGLIRLA
Sbjct 189 VGHDFYLFHDKETDRPSVVYRRHAFDYGLIRLA 221
>gi|226305659|ref|YP_002765619.1| hypothetical protein RER_21720 [Rhodococcus erythropolis PR4]
gi|229489536|ref|ZP_04383399.1| S30AE family protein [Rhodococcus erythropolis SK121]
gi|226184776|dbj|BAH32880.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229323633|gb|EEN89391.1| S30AE family protein [Rhodococcus erythropolis SK121]
Length=226
Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/221 (66%), Positives = 175/221 (80%), Gaps = 17/221 (7%)
Query 1 VDSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNR 60
++ + A P+S+ +V KGRNVEIPDHFRIYVS+KLARLE FD +I+ FDVEL HERNR
Sbjct 16 IERSENAAAPRSD--VVVKGRNVEIPDHFRIYVSEKLARLEHFDPSIFHFDVELQHERNR 73
Query 61 RQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTP 120
RQ KSCQRVEITARG+GPV R EA ADSFYAA ES + KLESRLRR KDR+KVHYGDK P
Sbjct 74 RQAKSCQRVEITARGKGPVARAEASADSFYAAFESVIDKLESRLRRTKDRKKVHYGDKRP 133
Query 121 VSLAEATAVV-------PAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVD 173
VS+AEATA + P+ N + E ++DG PGR+VRTK+HPA+PM++D
Sbjct 134 VSVAEATASLVDADSLGVTPDISLNGQ--EPDEYDG------PGRVVRTKDHPAEPMTID 185
Query 174 DALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
DALY+MELVGHDFFLF+DK++++PSVVYRRHA+DYGLIRL
Sbjct 186 DALYEMELVGHDFFLFHDKESDKPSVVYRRHAFDYGLIRLT 226
>gi|289444817|ref|ZP_06434561.1| S30AE family protein [Mycobacterium tuberculosis T46]
gi|289417736|gb|EFD14976.1| S30AE family protein [Mycobacterium tuberculosis T46]
Length=192
Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/132 (100%), Positives = 132/132 (100%), Gaps = 0/132 (0%)
Query 83 EACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPAPENGFNTRPA 142
EACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPAPENGFNTRPA
Sbjct 61 EACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPAPENGFNTRPA 120
Query 143 EAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLFYDKDTERPSVVYR 202
EAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLFYDKDTERPSVVYR
Sbjct 121 EAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLFYDKDTERPSVVYR 180
Query 203 RHAYDYGLIRLA 214
RHAYDYGLIRLA
Sbjct 181 RHAYDYGLIRLA 192
>gi|54026580|ref|YP_120822.1| hypothetical protein nfa46070 [Nocardia farcinica IFM 10152]
gi|54018088|dbj|BAD59458.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=234
Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/211 (71%), Positives = 172/211 (82%), Gaps = 9/211 (4%)
Query 12 SNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEI 71
+ AE+V KGRNVE+PDHFRI+V+ KL+RLERFD TI++FDVEL HERNRRQRK+CQRVEI
Sbjct 25 TRAEVVVKGRNVEVPDHFRIHVADKLSRLERFDPTIFIFDVELFHERNRRQRKACQRVEI 84
Query 72 TARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVP 131
TARG+GPVVR EACAD+FYAALES K+ESRLRR KDRR+VHYG+KTPVS+AEATA +
Sbjct 85 TARGKGPVVRAEACADNFYAALESVTAKVESRLRRTKDRRRVHYGEKTPVSVAEATADL- 143
Query 132 APENGF---NTRPAEAHDHDGAVVERE-----PGRIVRTKEHPAKPMSVDDALYQMELVG 183
E F + PA HD + E PG IVRTK H A PM+VDDALYQMELVG
Sbjct 144 VDETLFARNGSEPAHRHDEEREFEPAEPEYQGPGHIVRTKVHSATPMTVDDALYQMELVG 203
Query 184 HDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
HDFFLF+DK+T+RPSVVYRRHA+DYGLIRLA
Sbjct 204 HDFFLFHDKETDRPSVVYRRHAFDYGLIRLA 234
>gi|333921445|ref|YP_004495026.1| S30AE family protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333483666|gb|AEF42226.1| S30AE family protein [Amycolicicoccus subflavus DQS3-9A1]
Length=246
Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 136/218 (63%), Positives = 168/218 (78%), Gaps = 17/218 (7%)
Query 13 NAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEIT 72
+A+IV KGRNVE+PDHFRI+V +KL+RLERF ++YLFDVEL HE+NRRQ K+CQR+EIT
Sbjct 28 HADIVVKGRNVEVPDHFRIHVEEKLSRLERFHPSVYLFDVELHHEKNRRQSKTCQRLEIT 87
Query 73 ARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVV-- 130
ARG+GPV+R EA A+SFYAALE AV KLESR RR +DRRKVH+G +TP+S+AEATA +
Sbjct 88 ARGKGPVIRAEASAESFYAALEVAVDKLESRFRRFRDRRKVHHGSRTPISVAEATAALTN 147
Query 131 ---PAPENGFNTRPAE--------AHDHDGAVVERE----PGRIVRTKEHPAKPMSVDDA 175
P P T+ AE A +GA + PG IVRTK HP++PM+VDDA
Sbjct 148 AQPPLPNLTSETKGAESASEGAEDAATQNGAEFAVDEYPGPGHIVRTKVHPSQPMTVDDA 207
Query 176 LYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRL 213
L +MELVGHDF+LF+D +T+ PSVVYRRHA+DYGLIRL
Sbjct 208 LSEMELVGHDFYLFHDVETDSPSVVYRRHAFDYGLIRL 245
>gi|262203502|ref|YP_003274710.1| ribosomal subunit interface protein [Gordonia bronchialis DSM
43247]
gi|262086849|gb|ACY22817.1| ribosomal subunit interface protein [Gordonia bronchialis DSM
43247]
Length=270
Score = 254 bits (649), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 136/216 (63%), Positives = 167/216 (78%), Gaps = 11/216 (5%)
Query 8 AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQ 67
AEP S +VF GRNVEIPDH+RIYV KLARLERFD +I+ FDVEL+HERNRRQ K CQ
Sbjct 57 AEPSST--VVFSGRNVEIPDHYRIYVGDKLARLERFDPSIFRFDVELNHERNRRQSKICQ 114
Query 68 RVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEAT 127
RVEITA G+GP+VR +AC ++FYAALE ++ KLESRLRR KDRR+VH+G++ P+S+AEAT
Sbjct 115 RVEITATGKGPIVRAQACGENFYAALEGSLDKLESRLRRVKDRRRVHHGNRRPISVAEAT 174
Query 128 AVVPAP--ENGFNTRPAEAHD-------HDGAVVEREPGRIVRTKEHPAKPMSVDDALYQ 178
+ P +N D D V E +PG++VR KEH A PM+VDDALY+
Sbjct 175 EIGAPPLRDNQLTVDGLVGADGATDEKTWDDGVQEYQPGQVVRVKEHTAVPMTVDDALYE 234
Query 179 MELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
MELVGHDFFLF+DK++++PSVVYRRHA+DYGLIRLA
Sbjct 235 MELVGHDFFLFHDKESDKPSVVYRRHAFDYGLIRLA 270
>gi|343927667|ref|ZP_08767135.1| hypothetical protein GOALK_097_00890 [Gordonia alkanivorans NBRC
16433]
gi|343762308|dbj|GAA14061.1| hypothetical protein GOALK_097_00890 [Gordonia alkanivorans NBRC
16433]
Length=273
Score = 250 bits (639), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 141/220 (65%), Positives = 167/220 (76%), Gaps = 16/220 (7%)
Query 8 AEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQ 67
AEP A++VF GRNVEIPDH+RIYV KLARLERFD TIY FDVEL+HERNRRQ K CQ
Sbjct 57 AEPI--AKVVFSGRNVEIPDHYRIYVGDKLARLERFDPTIYRFDVELNHERNRRQSKVCQ 114
Query 68 RVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEAT 127
+VEITA G+GP+VR +AC ++FYAALE A+ K+ESRLRR KDRR+VHYG++ P S+AEAT
Sbjct 115 QVEITATGKGPIVRAQACGENFYAALEHALDKVESRLRRVKDRRRVHYGNRRPQSVAEAT 174
Query 128 AVVPAPENGFNTRPAEAH-------------DHDGAVVEREPGRIVRTKEHPAKPMSVDD 174
V AP N E H + D V E PG+IVR KEH A PM+VDD
Sbjct 175 E-VGAPLLRDNQLTVEGHVGDPGMLEATERGEWDDGVDEYIPGQIVRVKEHTAVPMTVDD 233
Query 175 ALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
ALY+MELVGHDFFLF+DK++++PSVVYRRHA+DYGLIRL
Sbjct 234 ALYEMELVGHDFFLFHDKESDKPSVVYRRHAFDYGLIRLT 273
>gi|296138808|ref|YP_003646051.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Tsukamurella
paurometabola DSM 20162]
gi|296026942|gb|ADG77712.1| sigma 54 modulation protein/ribosomal protein S30EA [Tsukamurella
paurometabola DSM 20162]
Length=238
Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/203 (60%), Positives = 154/203 (76%), Gaps = 5/203 (2%)
Query 13 NAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEIT 72
NA + GRNV++P+HFR+Y+ KLARLE+F TI LF+V L HE N RQ K CQR+E+T
Sbjct 40 NAPLAIDGRNVDVPEHFRVYIGDKLARLEKFRSTITLFEVSLFHEPNPRQSKICQRLELT 99
Query 73 ARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPA 132
RG+G V R EA AD+FYAA E+A+ K++SR+R+ DR+KVHYG++TPVS++EATA
Sbjct 100 VRGKGGVARAEAAADNFYAAFETALTKVQSRIRKASDRKKVHYGNRTPVSVSEATAPSAL 159
Query 133 PENGFNTRPAEAHDHDGAVVERE-PGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLFYD 191
P+ T D A+VE PG++VR K+HP PM+VDDALYQMELVGHDFFLF+D
Sbjct 160 PDASSETD----DDPYAALVEDHLPGQVVRIKDHPGTPMTVDDALYQMELVGHDFFLFFD 215
Query 192 KDTERPSVVYRRHAYDYGLIRLA 214
K+TE+PSVVYRR A+DYGL+RL
Sbjct 216 KETEKPSVVYRRKAFDYGLLRLT 238
>gi|256380296|ref|YP_003103956.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Actinosynnema
mirum DSM 43827]
gi|255924599|gb|ACU40110.1| sigma 54 modulation protein/ribosomal protein S30EA [Actinosynnema
mirum DSM 43827]
Length=222
Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/223 (58%), Positives = 158/223 (71%), Gaps = 25/223 (11%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+P+H+R++V++KLARLER+DR + FDVEL HE NRRQ K+CQRVEIT +
Sbjct 2 DIVVKGRNVEVPEHYRVHVAEKLARLERYDRKVIRFDVELFHEPNRRQSKNCQRVEITGK 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATA------ 128
GRGPV+R EA A FYAAL++AV KLESRLRR DRR+VHYG + S+AEAT
Sbjct 62 GRGPVIRAEASAGDFYAALDTAVAKLESRLRRTHDRRRVHYGRRGTTSVAEATGGLADVL 121
Query 129 ----------------VVPAPENGFNTR-PAEAHDHDGAVVEREPGRIVRTKEHPAKPMS 171
P E+G++ PA+ D DG + + PG+IVR KEH AKPM+
Sbjct 122 VSDGQAAAQGRTALLEAAPQSEDGYDAEVPAQRWD-DG-LDDNLPGQIVREKEHAAKPMT 179
Query 172 VDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
VD ALY+MELVGHDF+LF D D RPSVVYRR +DYG+IRLA
Sbjct 180 VDQALYEMELVGHDFYLFADADCGRPSVVYRRRGFDYGVIRLA 222
>gi|300789804|ref|YP_003770095.1| sigma 54 modulation protein/ribosomal protein S30EA [Amycolatopsis
mediterranei U32]
gi|299799318|gb|ADJ49693.1| sigma 54 modulation protein/ribosomal protein S30EA [Amycolatopsis
mediterranei U32]
gi|340531472|gb|AEK46677.1| sigma 54 modulation protein/ribosomal protein S30EA [Amycolatopsis
mediterranei S699]
Length=228
Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 132/231 (58%), Positives = 156/231 (68%), Gaps = 35/231 (15%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+PDH+R VS+KLARLER+DR + +DVEL HE NRRQ KSCQRVEIT +
Sbjct 2 DIVVKGRNVEVPDHYRALVSEKLARLERYDRKVIRYDVELFHEPNRRQAKSCQRVEITGK 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEA-------- 126
GRGP VR EACA FYAAL+SAV KLE+RLRR DRR+VHYG P S+AEA
Sbjct 62 GRGPAVRAEACAADFYAALDSAVTKLENRLRRTHDRRRVHYGRSRPESVAEATSALPGGG 121
Query 127 ----------TAVVPAPE-----NGFNT--------RPAEAHDHDGAVVEREPGRIVRTK 163
TAV+ APE NGF + + + A D G +PGR+VR K
Sbjct 122 SPAAASPAARTAVLDAPEAEPQPNGFASAEEFHLPQQQSWADDDLG----HQPGRVVREK 177
Query 164 EHPAKPMSVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
+H A PM+VD ALY+MELVGHDF+LF D D RPSVVYRR +DYG+IRL
Sbjct 178 QHTADPMTVDQALYEMELVGHDFYLFNDSDAGRPSVVYRRKGFDYGVIRLG 228
>gi|326383267|ref|ZP_08204955.1| ribosomal subunit interface protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326198017|gb|EGD55203.1| ribosomal subunit interface protein [Gordonia neofelifaecis NRRL
B-59395]
Length=241
Score = 224 bits (571), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/204 (58%), Positives = 148/204 (73%), Gaps = 5/204 (2%)
Query 13 NAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEIT 72
AE+ GRNVEIPDHFR+Y+S KLA+LE FD TI+ F+V L HE N RQ KS + VEIT
Sbjct 41 KAELTMSGRNVEIPDHFRVYMSSKLAKLEHFDTTIFRFEVVLYHEPNPRQAKSAEIVEIT 100
Query 73 ARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHY-GDKTPVSLAEATAVVP 131
ARGRGPVVR +A ++FYAA E A KL RLRR K R+++ G P SLAEA A P
Sbjct 101 ARGRGPVVRAQAAGENFYAACELAFDKLHKRLRRAKSRKRIRKDGMHRPTSLAEAAADAP 160
Query 132 APENGFNTRPAEAHD-HDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLFY 190
+ PA D + +V + +PG++VR K+H + PMSVD+ALY+MELVGHDF+LF+
Sbjct 161 ---HLLPDEPAAPADPFEDSVDDHQPGQVVRVKDHTSSPMSVDEALYEMELVGHDFYLFH 217
Query 191 DKDTERPSVVYRRHAYDYGLIRLA 214
D +T++PSVVYRRHA+DYG+IRLA
Sbjct 218 DCETDKPSVVYRRHAFDYGVIRLA 241
>gi|134102877|ref|YP_001108538.1| S30AE family protein [Saccharopolyspora erythraea NRRL 2338]
gi|291009678|ref|ZP_06567651.1| S30AE family protein [Saccharopolyspora erythraea NRRL 2338]
gi|133915500|emb|CAM05613.1| S30AE family protein [Saccharopolyspora erythraea NRRL 2338]
Length=231
Score = 221 bits (562), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 122/228 (54%), Positives = 144/228 (64%), Gaps = 31/228 (13%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+PDH+R +V +KL RLER+ + DVEL HERN RQ K+CQRVEIT +
Sbjct 2 DIVVKGRNVEVPDHYRQHVDEKLTRLERYSKKTIRADVELFHERNPRQAKTCQRVEITLK 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATA------ 128
G+G VR EA A FYAAL++A KLE RLRR DRRKVHYG P S+A+ATA
Sbjct 62 GKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVHYGQHNPTSVAQATAAMADRT 121
Query 129 VVPAPENG--------------------FNTR--PAEAHDHDGAVVEREPGRIVRTKEHP 166
VV G + T P + D EPGRIVR KEH
Sbjct 122 VVTGTSGGRTALLEAPEEEQEEQEESAEYTTAEVPEQRWSSDNGY---EPGRIVREKEHT 178
Query 167 AKPMSVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
A+PM+VD ALYQMELVGHDF+LF D D+ R SVVYRR +DYG+IRLA
Sbjct 179 AEPMTVDQALYQMELVGHDFYLFSDADSGRASVVYRRKGFDYGVIRLA 226
>gi|126215786|gb|ABN81013.1| Yvy [Rhodococcus opacus]
Length=161
Score = 220 bits (561), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/164 (68%), Positives = 132/164 (81%), Gaps = 4/164 (2%)
Query 42 RFDRTIYLFDVELDHERNRRQRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLE 101
RFD +I+LFDVEL HE NRRQRK+CQRVEITARG+GPV R EACADSFYAA ES KLE
Sbjct 1 RFDPSIFLFDVELHHEPNRRQRKNCQRVEITARGKGPVARAEACADSFYAAFESVTAKLE 60
Query 102 SRLRRGKDRRKVHYGDKTPVSLAEATAVVPAPENGFNTRPAEAHDHDGAVV-EREPGRIV 160
SRLRR KDR+KVHYG+KTPVS+AEATA + A ++ P + DG + E PG +V
Sbjct 61 SRLRRTKDRKKVHYGEKTPVSVAEATAAL-AEDDSLGISPDIS--LDGQMPDEHTPGHVV 117
Query 161 RTKEHPAKPMSVDDALYQMELVGHDFFLFYDKDTERPSVVYRRH 204
RTKEH A PM+VDDALY+MELVGHDFFLF+DK++++ +VVYRRH
Sbjct 118 RTKEHKATPMTVDDALYEMELVGHDFFLFHDKESDKATVVYRRH 161
>gi|302530014|ref|ZP_07282356.1| S30AE family protein [Streptomyces sp. AA4]
gi|302438909|gb|EFL10725.1| S30AE family protein [Streptomyces sp. AA4]
Length=227
Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/229 (56%), Positives = 153/229 (67%), Gaps = 32/229 (13%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+P+H+R VS+KLARLER+D+ + +DVEL HE NRRQ KSCQRVEIT +
Sbjct 2 DIVVKGRNVEVPEHYRALVSEKLARLERYDKKVIRYDVELFHEPNRRQAKSCQRVEITGK 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEA-------- 126
GRGP VR EA A FYAAL+SAV KLE+RLRR DRR+VHYG P S+AEA
Sbjct 62 GRGPAVRAEASAADFYAALDSAVTKLENRLRRTHDRRRVHYGRSRPESVAEATSMAGGSD 121
Query 127 --------TAVVPAPE------NGFNT-------RPAEAHDHDGAVVEREPGRIVRTKEH 165
TAV+ AP+ NGF R D D + +PGR+VR K+H
Sbjct 122 AVAGPAMGTAVLDAPDATESMANGFAATSAGDIPRQGRWEDED---LGHQPGRVVREKQH 178
Query 166 PAKPMSVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
A PM+VD ALY+MELVGHDF+LF D + RPSVVYRR +DYG+IRL
Sbjct 179 AADPMTVDQALYEMELVGHDFYLFNDSEAGRPSVVYRRKGFDYGVIRLG 227
>gi|257057060|ref|YP_003134892.1| 30S ribosomal protein S30P/sigma 54 modulation protein [Saccharomonospora
viridis DSM 43017]
gi|256586932|gb|ACU98065.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Saccharomonospora
viridis DSM 43017]
Length=226
Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/225 (55%), Positives = 153/225 (68%), Gaps = 25/225 (11%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+P+H+R +V+ K+ARLER+DR + +DVEL HE N RQ K+CQRVEIT +
Sbjct 2 DIVIKGRNVEVPEHYRNHVAGKMARLERYDRKVISYDVELYHEPNPRQAKTCQRVEITGK 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSL----------- 123
G+GPVVR EA A FY AL+SA+ KLESRLRR DRR+VHYG ++P SL
Sbjct 62 GKGPVVRAEARAGDFYTALDSAIRKLESRLRRMHDRRRVHYGRRSPESLAEATAAAFRAS 121
Query 124 -------AEATAVVPAPENGFNTRPAEAHD-------HDGAVVEREPGRIVRTKEHPAKP 169
TAV+ AP + E + D VV R+PGRIVR K+H A+P
Sbjct 122 TAGRGRGRGGTAVLEAPTEPVTSSTDETAELDVPEQRWDDGVVPRQPGRIVREKQHSAEP 181
Query 170 MSVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
M++DDALYQMELVGHDF+LF D +T +PSVVYRR +DYG+IRL
Sbjct 182 MTIDDALYQMELVGHDFYLFNDSETGKPSVVYRRKGFDYGVIRLG 226
>gi|159036563|ref|YP_001535816.1| sigma 54 modulation protein/ribosomal protein S30EA [Salinispora
arenicola CNS-205]
gi|157915398|gb|ABV96825.1| sigma 54 modulation protein/ribosomal protein S30EA [Salinispora
arenicola CNS-205]
Length=208
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/211 (55%), Positives = 150/211 (72%), Gaps = 16/211 (7%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+PDH+R++V++KLA++ER+D + DVEL HERN RQ CQRVEIT
Sbjct 2 DIVVKGRNVEVPDHYRVHVAEKLAKIERYDHKVIRVDVELFHERNPRQSDHCQRVEITCF 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPAPE 134
RGPV+R EAC FY+AL++A+ +L++R+RR DRR+VH+G P+S+A ATA +P +
Sbjct 62 SRGPVMRAEACTSDFYSALDAAIARLDTRMRRAADRRRVHHGRHAPISVAAATARLPVTD 121
Query 135 NGFNTRPAEAHDHDGAVV-----------EREPGRIVRTKEHPAKPMSVDDALYQMELVG 183
A HDGA + +P I R K HPA+PM+VDDAL+QMELVG
Sbjct 122 -----LVAAPLSHDGATATVAAERPEEERDDQPWHIAREKVHPAEPMTVDDALFQMELVG 176
Query 184 HDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
HDF+LF DK++ RPSVVYRRHAYDYG+I LA
Sbjct 177 HDFYLFQDKESGRPSVVYRRHAYDYGIISLA 207
>gi|315502062|ref|YP_004080949.1| sigma 54 modulation protein/ribosomal protein s30ea [Micromonospora
sp. L5]
gi|315408681|gb|ADU06798.1| sigma 54 modulation protein/ribosomal protein S30EA [Micromonospora
sp. L5]
Length=214
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/211 (55%), Positives = 153/211 (73%), Gaps = 12/211 (5%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+PDH+R++V++KLA++ER+D+ + DVEL HERN RQ +CQRVEIT
Sbjct 2 DIVVKGRNVEVPDHYRVHVAEKLAKIERYDQKLIRVDVELFHERNPRQADTCQRVEITCV 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPAPE 134
RGPV+R EAC + FY+AL++A+ KL++R RR DRR+VH G P+S+A ATA +P +
Sbjct 62 TRGPVIRAEACTNDFYSALDAAIAKLDTRFRRAADRRRVHRGRHAPISVAAATAGLPVAD 121
Query 135 -NGFNTRPAEAHDHDGAVVER-----------EPGRIVRTKEHPAKPMSVDDALYQMELV 182
+G + H AV ER +P I R K HPA+PM+VDDAL+QMELV
Sbjct 122 LDGPGLAALDGHGTATAVAERPDESGHTEPDDQPWHIARAKVHPAEPMTVDDALFQMELV 181
Query 183 GHDFFLFYDKDTERPSVVYRRHAYDYGLIRL 213
GHDF+LF DK++ RPSVVYRRHAYDYG+I+L
Sbjct 182 GHDFYLFQDKESGRPSVVYRRHAYDYGIIQL 212
>gi|302865514|ref|YP_003834151.1| ribosomal subunit interface protein [Micromonospora aurantiaca
ATCC 27029]
gi|302568373|gb|ADL44575.1| ribosomal subunit interface protein [Micromonospora aurantiaca
ATCC 27029]
Length=214
Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/211 (55%), Positives = 153/211 (73%), Gaps = 12/211 (5%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+PDH+R++V++KLA++ER+D+ + DVEL HERN RQ +CQRVEIT
Sbjct 2 DIVVKGRNVEVPDHYRVHVAEKLAKIERYDQKLIRVDVELFHERNPRQADTCQRVEITCV 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPAPE 134
RGPV+R EAC + FY+AL++A+ KL++R RR DRR+VH G P+S+A ATA +P +
Sbjct 62 TRGPVIRAEACTNDFYSALDAAIAKLDTRFRRAADRRRVHRGRHAPISVAAATAGLPVAD 121
Query 135 -NGFNTRPAEAHDHDGAVVER-----------EPGRIVRTKEHPAKPMSVDDALYQMELV 182
+G + H AV ER +P I R K HPA+PM+VDDAL+QMELV
Sbjct 122 LDGPGLAALDGHGTAIAVAERPDESGHTEPDDQPWHIARAKVHPAEPMTVDDALFQMELV 181
Query 183 GHDFFLFYDKDTERPSVVYRRHAYDYGLIRL 213
GHDF+LF DK++ RPSVVYRRHAYDYG+I+L
Sbjct 182 GHDFYLFQDKESGRPSVVYRRHAYDYGIIQL 212
>gi|317508039|ref|ZP_07965727.1| sigma 54 modulation protein/S30EA ribosomal protein [Segniliparus
rugosus ATCC BAA-974]
gi|316253665|gb|EFV13047.1| sigma 54 modulation protein/S30EA ribosomal protein [Segniliparus
rugosus ATCC BAA-974]
Length=238
Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 124/233 (54%), Positives = 150/233 (65%), Gaps = 27/233 (11%)
Query 2 DSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRR 61
D+ + E +S+ IV GR V +P+HFR +V++KL RLE+FD + +VEL HE N R
Sbjct 10 DAAEFAEESESHPNIVVTGRRVVVPEHFREHVAEKLLRLEKFDPRCHRIEVELAHEANPR 69
Query 62 QRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPV 121
Q K CQRV++T G+GPVVR EA A++FYAALE A KL RLRR KDRR+VH G P
Sbjct 70 QSKHCQRVQVTVLGKGPVVRAEARAENFYAALELAGDKLMERLRRSKDRRQVHQGLHRPT 129
Query 122 SLAEATAVVPAPENGFN----TRPAEAHDH-DGAVVE----------------REPGRIV 160
S+AEATA NG+ R A A D DGA E PG+IV
Sbjct 130 SVAEATA------NGYAGFVPGRDAIARDRADGASAEGRVQSGQWDVELDKEPSGPGQIV 183
Query 161 RTKEHPAKPMSVDDALYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRL 213
R K HPA PMSVD+AL MELVGHDF+LF+D+ T PSVVYRRHA+DYGLIRL
Sbjct 184 RVKSHPAAPMSVDEALSHMELVGHDFYLFHDEATGLPSVVYRRHAFDYGLIRL 236
>gi|238063014|ref|ZP_04607723.1| 30S ribosomal protein S30EA [Micromonospora sp. ATCC 39149]
gi|237884825|gb|EEP73653.1| 30S ribosomal protein S30EA [Micromonospora sp. ATCC 39149]
Length=211
Score = 214 bits (545), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 121/212 (58%), Positives = 153/212 (73%), Gaps = 17/212 (8%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+PDH+R++V++KLA++ER+D + DVEL HERN RQ CQRVEIT
Sbjct 2 DIVVKGRNVEVPDHYRVHVAEKLAKIERYDHKLIRVDVELFHERNPRQSDHCQRVEITCV 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVP--- 131
RGPV+R EAC D FY+AL++A+ KL++RLRR DRR+VH G P+S+A ATA +P
Sbjct 62 SRGPVIRAEACTDDFYSALDAAIAKLDNRLRRAADRRRVHRGRHAPISVAAATADLPVAG 121
Query 132 --APENGFN-TRPAEAHDHDGAVVER-------EPGRIVRTKEHPAKPMSVDDALYQMEL 181
AP + R A A AV ER +P I R K HPA+PM+VDDAL+QMEL
Sbjct 122 LDAPVPALDGVRSATA----TAVAERFEEEPDDQPWHIARAKVHPAEPMTVDDALFQMEL 177
Query 182 VGHDFFLFYDKDTERPSVVYRRHAYDYGLIRL 213
VGHDF+LF+DK++ RPSVVYRRHAYDYG+I L
Sbjct 178 VGHDFYLFHDKESGRPSVVYRRHAYDYGIISL 209
>gi|296394607|ref|YP_003659491.1| ribosomal subunit interface protein [Segniliparus rotundus DSM
44985]
gi|296181754|gb|ADG98660.1| ribosomal subunit interface protein [Segniliparus rotundus DSM
44985]
Length=249
Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/218 (53%), Positives = 142/218 (66%), Gaps = 21/218 (9%)
Query 16 IVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITARG 75
IV GR V +P+HFR +V++K+ARLE+FD + +VEL HE N RQ K CQRV++T G
Sbjct 30 IVVTGRRVVVPEHFREHVAEKMARLEKFDAHCHRVEVELAHESNPRQSKQCQRVQVTVLG 89
Query 76 RGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATA------V 129
+GPVVR EA A++FYAAL+ A K+ RLRR KDRR+VH+G P S+AEATA +
Sbjct 90 KGPVVRAEARAETFYAALDLAADKIIERLRRSKDRRQVHHGQHRPTSVAEATANGWEPEM 149
Query 130 VPAPENGFNTRPAEAHDHDGAV--------------VEREPGRIVRTKEHPAKPMSVDDA 175
PA NG A+A GA PG+IVR K HP PM V+DA
Sbjct 150 APAAANG-GPGSAQASPALGASSGFSPARGDAQADKAPSGPGQIVRVKSHPTSPMGVEDA 208
Query 176 LYQMELVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRL 213
L +MELVGHDF+LF+DK+T PSVVYRR YDYGLIRL
Sbjct 209 LNRMELVGHDFYLFHDKETGLPSVVYRRRGYDYGLIRL 246
>gi|291299364|ref|YP_003510642.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Stackebrandtia
nassauensis DSM 44728]
gi|290568584|gb|ADD41549.1| sigma 54 modulation protein/ribosomal protein S30EA [Stackebrandtia
nassauensis DSM 44728]
Length=206
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/203 (58%), Positives = 147/203 (73%), Gaps = 4/203 (1%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKL-ARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITA 73
EIV GRNVE+PDH+R V KL ++++FD + DVEL HE+NRRQ + CQRVEIT
Sbjct 2 EIVVTGRNVEVPDHYRQLVEDKLRKKVDKFDHKVIRIDVELHHEKNRRQHEQCQRVEITC 61
Query 74 RGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPAP 133
R RGPV+R EAC F AA E+A KL RLRR DRR+VH+G +TPVS+ +ATA++
Sbjct 62 RSRGPVIRAEACNKDFTAAFEAAAAKLGERLRRSADRRRVHHGRRTPVSVGQATAMIAGN 121
Query 134 ENGFNTRPAEAHD---HDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLFY 190
NG RP + D ++G V + PGRIVR KEH +PM+VDDAL+ MELVGHDF+LF+
Sbjct 122 GNGNKARPVISEDVDPYEGLVEDHLPGRIVREKEHRGEPMTVDDALFHMELVGHDFYLFH 181
Query 191 DKDTERPSVVYRRHAYDYGLIRL 213
DK+T RPSVVYRR +DYG++RL
Sbjct 182 DKETGRPSVVYRRKGFDYGILRL 204
>gi|145593528|ref|YP_001157825.1| ribosomal subunit interface protein [Salinispora tropica CNB-440]
gi|145302865|gb|ABP53447.1| sigma 54 modulation protein / SSU ribosomal protein S30P [Salinispora
tropica CNB-440]
Length=208
Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/206 (56%), Positives = 147/206 (72%), Gaps = 6/206 (2%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+PDHFR++V++KLA++ER+D I DVEL HERN RQ CQRVEIT
Sbjct 2 DIVVKGRNVEVPDHFRVHVAEKLAKIERYDHKIIRVDVELFHERNPRQADHCQRVEITCV 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPAPE 134
RGPV+R EA FY+AL++A+ +L++R+RR DRR+VH+G P+S+A ATA +P +
Sbjct 62 SRGPVMRAEAGTSDFYSALDAAIARLDARMRRAADRRRVHHGRHAPISVAAATAGLPVTD 121
Query 135 --NGFNTRPAEAHDHDGAVVERE----PGRIVRTKEHPAKPMSVDDALYQMELVGHDFFL 188
G + A E E P I R K HPA+PM++DDAL+QMELVGHDF+L
Sbjct 122 LVAGPLSADAATATAVAERAEEEHDDQPWHIAREKVHPAEPMTIDDALFQMELVGHDFYL 181
Query 189 FYDKDTERPSVVYRRHAYDYGLIRLA 214
F DK++ RPSVVYRRHAYDYG+I LA
Sbjct 182 FQDKESGRPSVVYRRHAYDYGIISLA 207
>gi|284992660|ref|YP_003411214.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Geodermatophilus
obscurus DSM 43160]
gi|284065905|gb|ADB76843.1| sigma 54 modulation protein/ribosomal protein S30EA [Geodermatophilus
obscurus DSM 43160]
Length=228
Score = 205 bits (521), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/210 (54%), Positives = 140/210 (67%), Gaps = 18/210 (8%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLF--DVELDHERNRRQRKSCQRVEIT 72
EIV +GRNVE+P+H+R +V K+ + +RFD + + DVEL HE+N RQ CQRVEIT
Sbjct 2 EIVVRGRNVEVPEHYRQHVEDKVGQSDRFDGKLKILRIDVELFHEKNPRQSGKCQRVEIT 61
Query 73 ARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPA 132
RG+GPVVR EA A FYAAL+ A KL+ RLR+ DRR+VH+G +TP S+ A
Sbjct 62 LRGKGPVVRAEAAAPDFYAALDLAAGKLDHRLRKAADRRRVHHGRRTPASVRVGGG---A 118
Query 133 PENGFNTRPAEAHDHDGAVVE---------REPGRIVRTKEHPAKPMSVDDALYQMELVG 183
P +T E+ D D + E PG+IVR K HPA PM VD AL++MELVG
Sbjct 119 P----DTDVTESFDRDRELAEGPHVTDLDEHLPGQIVREKHHPATPMHVDQALHEMELVG 174
Query 184 HDFFLFYDKDTERPSVVYRRHAYDYGLIRL 213
HDFFLF DT +P+VVYRRHAYDYGLIRL
Sbjct 175 HDFFLFLCADTGQPTVVYRRHAYDYGLIRL 204
>gi|340795128|ref|YP_004760591.1| hypothetical protein CVAR_2168 [Corynebacterium variabile DSM
44702]
gi|340535038|gb|AEK37518.1| hypothetical protein CVAR_2168 [Corynebacterium variabile DSM
44702]
Length=226
Score = 204 bits (520), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 111/205 (55%), Positives = 139/205 (68%), Gaps = 4/205 (1%)
Query 10 PKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRV 69
P++ EI GRNVEIP+HF V+QKLA++ER D T+ F VEL HERN R+ R+
Sbjct 16 PETQVEIT--GRNVEIPEHFAERVNQKLAKVERLDPTLTYFHVELQHERNPRRADESDRI 73
Query 70 EITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHY-GDKTPVSLAEATA 128
+ITA G+G + R EA DSFYAALE+AV K+E LR+ K RRK+ G + PVS+ EATA
Sbjct 74 QITASGKGHIARAEAKEDSFYAALEAAVAKMERSLRKVKARRKISLSGHRAPVSVGEATA 133
Query 129 VVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFL 188
+ P D D + PG+IVR KEHPA P+SVD+AL +MELVGHDFFL
Sbjct 134 ELVQEAEKPEATPG-PFDVDPYADQFLPGQIVRKKEHPATPISVDEALSEMELVGHDFFL 192
Query 189 FYDKDTERPSVVYRRHAYDYGLIRL 213
F +++T +PSVVYRRH YDYGLI L
Sbjct 193 FVNEETGKPSVVYRRHGYDYGLIAL 217
>gi|169630663|ref|YP_001704312.1| hypothetical protein MAB_3583c [Mycobacterium abscessus ATCC
19977]
gi|169242630|emb|CAM63658.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=149
Score = 204 bits (519), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 112/148 (76%), Positives = 127/148 (86%), Gaps = 2/148 (1%)
Query 69 VEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATA 128
+EITARGRGPVVRGEACAD+F++ALE+AV KLESRLRRG+DRRKVHYGDKTPVSLAEATA
Sbjct 1 MEITARGRGPVVRGEACADTFHSALEAAVAKLESRLRRGRDRRKVHYGDKTPVSLAEATA 60
Query 129 VVPAPENGFNTRPAEAHDHDGAVVE--REPGRIVRTKEHPAKPMSVDDALYQMELVGHDF 186
V+PA AH H+GA V+ PG+IVRTKEHPAKPM+VDDALY+MELVGHDF
Sbjct 61 VLPADAFTPPVAVNGAHSHNGAEVDDGHGPGQIVRTKEHPAKPMTVDDALYEMELVGHDF 120
Query 187 FLFYDKDTERPSVVYRRHAYDYGLIRLA 214
FLF+D+ + RPSVVYRRHAYDYGLIRL
Sbjct 121 FLFHDQSSGRPSVVYRRHAYDYGLIRLG 148
>gi|330465924|ref|YP_004403667.1| sigma 54 modulation protein/ribosomal protein S30EA [Verrucosispora
maris AB-18-032]
gi|328808895|gb|AEB43067.1| sigma 54 modulation protein/ribosomal protein S30EA [Verrucosispora
maris AB-18-032]
Length=209
Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/211 (54%), Positives = 147/211 (70%), Gaps = 17/211 (8%)
Query 15 EIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEITAR 74
+IV KGRNVE+PDH+R++V++KLA++ER+D + +VEL HERN RQ CQRVEIT
Sbjct 2 DIVVKGRNVEVPDHYRVHVAEKLAKIERYDHKLIRAEVELFHERNPRQADHCQRVEITCF 61
Query 75 GRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGDKTPVSLAEATAVVPAPE 134
RGPV+R EAC FY+AL++A+ KL++RLRR DRR+VH G P+S+A ATA +P +
Sbjct 62 SRGPVIRAEACTSDFYSALDAAIAKLDARLRRAADRRRVHRGRHAPLSVAAATAGLPVTD 121
Query 135 ------------NGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELV 182
AE ++D +P I R K HPA+PM+VDDAL+QMELV
Sbjct 122 LPSAALGAPASAATAVAERAEEDEYDD-----QPWHIAREKVHPAEPMTVDDALFQMELV 176
Query 183 GHDFFLFYDKDTERPSVVYRRHAYDYGLIRL 213
GHDF+LF DK++ RPSVVYRRHAYDYG+I L
Sbjct 177 GHDFYLFQDKESGRPSVVYRRHAYDYGIISL 207
>gi|300779610|ref|ZP_07089466.1| ribosome-associated inhibitor protein Y [Corynebacterium genitalium
ATCC 33030]
gi|300533720|gb|EFK54779.1| ribosome-associated inhibitor protein Y [Corynebacterium genitalium
ATCC 33030]
Length=224
Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/204 (51%), Positives = 138/204 (68%), Gaps = 3/204 (1%)
Query 13 NAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRRQRKSCQRVEIT 72
NA++ GRNVE+P+HF+ V+ KLA++E+ D T+ F VEL HE N R+ R++IT
Sbjct 15 NAQVTITGRNVEVPEHFQERVNTKLAKIEKLDPTLNFFHVELKHEPNPRREAQANRIQIT 74
Query 73 ARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVHYGD-KTPVSLAEATA--V 129
A G+G + R EA DSFYAALESA+ K+E LR+ K RR++ G + P S E T+ V
Sbjct 75 ATGKGHLARAEAKEDSFYAALESAIGKMERSLRKVKVRREISMGGHRAPKSTYEVTSELV 134
Query 130 VPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQMELVGHDFFLF 189
A + A + ++ E PG++VRTKEHPA PMSVD+AL +MELVGHDF+LF
Sbjct 135 AEAEQARQEQDDRYADKYAESINENLPGQVVRTKEHPATPMSVDEALSEMELVGHDFYLF 194
Query 190 YDKDTERPSVVYRRHAYDYGLIRL 213
+ + +RPSVVYRRHAYDYGLI L
Sbjct 195 INDENQRPSVVYRRHAYDYGLITL 218
>gi|213964916|ref|ZP_03393115.1| S30AE family protein [Corynebacterium amycolatum SK46]
gi|213952452|gb|EEB63835.1| S30AE family protein [Corynebacterium amycolatum SK46]
Length=219
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/214 (51%), Positives = 145/214 (68%), Gaps = 6/214 (2%)
Query 2 DSGQVLAEPKSNAEIVFKGRNVEIPDHFRIYVSQKLARLERFDRTIYLFDVELDHERNRR 61
D+ +VL+ NA++ GRNVE+P+HF V KLA++ER D T+ F VEL HE N R
Sbjct 6 DNNEVLS---PNAQVTITGRNVEVPEHFADRVKAKLAKIERLDPTLTFFHVELQHEPNPR 62
Query 62 QRKSCQRVEITARGRGPVVRGEACADSFYAALESAVVKLESRLRRGKDRRKVH-YGDKTP 120
+ R++ITA G+G + R EA DSFYAALESA+ K+E LR+ K RRK+ G + P
Sbjct 63 RADRSDRIQITATGKGHLARAEAKEDSFYAALESALGKMERSLRKVKARRKISRSGHRAP 122
Query 121 VSLAEATAVVPAPENGFNTRPAEAHDHDGAVVEREPGRIVRTKEHPAKPMSVDDALYQME 180
+S+ EATA + A A+ ++ V + PG++VRTK+H A PM+V+DAL +ME
Sbjct 123 MSVGEATASLVAEAEAAAPEKADP--YEDLVEDVTPGQVVRTKQHSATPMTVEDALSEME 180
Query 181 LVGHDFFLFYDKDTERPSVVYRRHAYDYGLIRLA 214
LVGHDF+LF ++ T RPSVVYRRHAYDYGLI LA
Sbjct 181 LVGHDFYLFVNEATSRPSVVYRRHAYDYGLIELA 214
Lambda K H
0.320 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 254328062080
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40