BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3243c Length=280 Score E Sequences producing significant alignments: (Bits) Value gi|15842832|ref|NP_337869.1| hypothetical protein MT3341 [Mycoba... 548 5e-154 gi|15610379|ref|NP_217760.1| hypothetical protein Rv3243c [Mycob... 547 5e-154 gi|289575963|ref|ZP_06456190.1| conserved hypothetical protein [... 546 1e-153 gi|308232390|ref|ZP_07415909.2| hypothetical protein TMAG_02696 ... 514 5e-144 gi|323718112|gb|EGB27294.1| hypothetical protein TMMG_02391 [Myc... 510 8e-143 gi|240172614|ref|ZP_04751273.1| hypothetical protein MkanA1_2509... 412 4e-113 gi|183981324|ref|YP_001849615.1| hypothetical protein MMAR_1302 ... 410 8e-113 gi|118618056|ref|YP_906388.1| hypothetical protein MUL_2579 [Myc... 402 4e-110 gi|289751937|ref|ZP_06511315.1| conserved hypothetical protein [... 392 3e-107 gi|289571470|ref|ZP_06451697.1| hypothetical protein TBJG_02001 ... 340 1e-91 gi|315444351|ref|YP_004077230.1| hypothetical protein Mspyr1_276... 224 1e-56 gi|145224015|ref|YP_001134693.1| hypothetical protein Mflv_3429 ... 203 3e-50 gi|333918056|ref|YP_004491637.1| hypothetical protein AS9A_0378 ... 83.6 3e-14 gi|300783403|ref|YP_003763694.1| hypothetical protein AMED_1479 ... 77.8 2e-12 gi|302524773|ref|ZP_07277115.1| predicted protein [Streptomyces ... 50.1 4e-04 gi|54027629|ref|YP_121871.1| hypothetical protein nfa56550 [Noca... 42.0 0.097 gi|194367309|ref|YP_002029919.1| methyl-accepting chemotaxis sen... 38.9 0.77 gi|302205410|gb|ADL09752.1| UDP-N-acetylenolpyruvoylglucosamine ... 35.4 9.2 gi|300857671|ref|YP_003782654.1| UDP-N-acetylmuramate dehydrogen... 35.4 9.3 >gi|15842832|ref|NP_337869.1| hypothetical protein MT3341 [Mycobacterium tuberculosis CDC1551] gi|308371284|ref|ZP_07424438.2| hypothetical protein TMCG_01666 [Mycobacterium tuberculosis SUMu003] gi|308372475|ref|ZP_07667387.1| hypothetical protein TMDG_02078 [Mycobacterium tuberculosis SUMu004] 9 more sequence titles Length=286 Score = 548 bits (1411), Expect = 5e-154, Method: Compositional matrix adjust. Identities = 280/280 (100%), Positives = 280/280 (100%), Gaps = 0/280 (0%) Query 1 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV 60 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV Sbjct 7 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV 66 Query 61 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR 120 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR Sbjct 67 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR 126 Query 121 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVD 180 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVD Sbjct 127 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVD 186 Query 181 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL 240 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL Sbjct 187 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL 246 Query 241 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 280 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD Sbjct 247 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 286 >gi|15610379|ref|NP_217760.1| hypothetical protein Rv3243c [Mycobacterium tuberculosis H37Rv] gi|31794423|ref|NP_856916.1| hypothetical protein Mb3271c [Mycobacterium bovis AF2122/97] gi|121639132|ref|YP_979356.1| hypothetical protein BCG_3272c [Mycobacterium bovis BCG str. Pasteur 1173P2] 45 more sequence titles Length=280 Score = 547 bits (1410), Expect = 5e-154, Method: Compositional matrix adjust. Identities = 280/280 (100%), Positives = 280/280 (100%), Gaps = 0/280 (0%) Query 1 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV 60 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV Sbjct 1 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV 60 Query 61 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR 120 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR Sbjct 61 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR 120 Query 121 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVD 180 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVD Sbjct 121 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVD 180 Query 181 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL 240 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL Sbjct 181 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL 240 Query 241 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 280 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD Sbjct 241 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 280 >gi|289575963|ref|ZP_06456190.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|339633253|ref|YP_004724895.1| hypothetical protein MAF_32540 [Mycobacterium africanum GM041182] gi|289540394|gb|EFD44972.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|339332609|emb|CCC28324.1| hypothetical protein MAF_32540 [Mycobacterium africanum GM041182] Length=280 Score = 546 bits (1407), Expect = 1e-153, Method: Compositional matrix adjust. Identities = 279/280 (99%), Positives = 279/280 (99%), Gaps = 0/280 (0%) Query 1 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV 60 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV Sbjct 1 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV 60 Query 61 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR 120 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR Sbjct 61 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR 120 Query 121 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVD 180 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGE SESGAARLRWARRPDWGGLEVD Sbjct 121 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGEFSESGAARLRWARRPDWGGLEVD 180 Query 181 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL 240 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL Sbjct 181 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL 240 Query 241 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 280 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD Sbjct 241 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 280 >gi|308232390|ref|ZP_07415909.2| hypothetical protein TMAG_02696 [Mycobacterium tuberculosis SUMu001] gi|308370202|ref|ZP_07666890.1| hypothetical protein TMBG_01938 [Mycobacterium tuberculosis SUMu002] gi|308376041|ref|ZP_07668173.1| hypothetical protein TMGG_02791 [Mycobacterium tuberculosis SUMu007] 11 more sequence titles Length=264 Score = 514 bits (1324), Expect = 5e-144, Method: Compositional matrix adjust. Identities = 263/264 (99%), Positives = 264/264 (100%), Gaps = 0/264 (0%) Query 17 LDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVLTVTEL 76 +DMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVLTVTEL Sbjct 1 MDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVLTVTEL 60 Query 77 DSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAPVELSS 136 DSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAPVELSS Sbjct 61 DSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAPVELSS 120 Query 137 ALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTTLWLRP 196 ALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTTLWLRP Sbjct 121 ALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTTLWLRP 180 Query 197 RTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQLSALLPEWRTELPLRYL 256 RTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQLSALLPEWRTELPLRYL Sbjct 181 RTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQLSALLPEWRTELPLRYL 240 Query 257 ESVITQLSQGALSFVWPPLRSGAD 280 ESVITQLSQGALSFVWPPLRSGAD Sbjct 241 ESVITQLSQGALSFVWPPLRSGAD 264 >gi|323718112|gb|EGB27294.1| hypothetical protein TMMG_02391 [Mycobacterium tuberculosis CDC1551A] Length=262 Score = 510 bits (1314), Expect = 8e-143, Method: Compositional matrix adjust. Identities = 262/262 (100%), Positives = 262/262 (100%), Gaps = 0/262 (0%) Query 19 MLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVLTVTELDS 78 MLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVLTVTELDS Sbjct 1 MLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVLTVTELDS 60 Query 79 ALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAPVELSSAL 138 ALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAPVELSSAL Sbjct 61 ALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAPVELSSAL 120 Query 139 PTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTTLWLRPRT 198 PTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTTLWLRPRT Sbjct 121 PTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTTLWLRPRT 180 Query 199 VITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQLSALLPEWRTELPLRYLES 258 VITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQLSALLPEWRTELPLRYLES Sbjct 181 VITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQLSALLPEWRTELPLRYLES 240 Query 259 VITQLSQGALSFVWPPLRSGAD 280 VITQLSQGALSFVWPPLRSGAD Sbjct 241 VITQLSQGALSFVWPPLRSGAD 262 >gi|240172614|ref|ZP_04751273.1| hypothetical protein MkanA1_25090 [Mycobacterium kansasii ATCC 12478] Length=276 Score = 412 bits (1058), Expect = 4e-113, Method: Compositional matrix adjust. Identities = 212/280 (76%), Positives = 230/280 (83%), Gaps = 4/280 (1%) Query 1 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV 60 MSPRVP LRWDDPFRALDMLASLWSSTG+ VSAGAAQAVA PYRTLF TLQQLL+ KE+ Sbjct 1 MSPRVPFLRWDDPFRALDMLASLWSSTGLPSVSAGAAQAVAMPYRTLFMTLQQLLVNKEI 60 Query 61 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR 120 TVRIG DVVLTVTELD+ L+PQGL VGQLGEVRVAAR + WDQHHL +AVAVLRNVHIR Sbjct 61 TVRIGGDDVVLTVTELDAELDPQGLPVGQLGEVRVAARDVRWDQHHLQTAVAVLRNVHIR 120 Query 121 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVD 180 PGVPPLV+AAP LSS L +IFDDVL+Q PQLR EL G ARLRWARRP WGG+EVD Sbjct 121 PGVPPLVVAAPARLSSVLSADIFDDVLQQVAPQLRSELRGDGTARLRWARRPGWGGVEVD 180 Query 181 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL 240 V G TTLWLRPR VITG RRW LP R PAY+VPLP+LPHGL +TDV L D L L Sbjct 181 AAVVG----TTLWLRPRAVITGHRRWPLPIRVPAYQVPLPKLPHGLLLTDVDLGPDSLHL 236 Query 241 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 280 SALLPEWR ELPLR+LE +IT+LSQGALSF WP L G+D Sbjct 237 SALLPEWRMELPLRHLEDLITRLSQGALSFTWPSLLRGSD 276 >gi|183981324|ref|YP_001849615.1| hypothetical protein MMAR_1302 [Mycobacterium marinum M] gi|183174650|gb|ACC39760.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=276 Score = 410 bits (1055), Expect = 8e-113, Method: Compositional matrix adjust. Identities = 218/280 (78%), Positives = 241/280 (87%), Gaps = 4/280 (1%) Query 1 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV 60 MSP+VP LRWDDPFRAL+ML SLWSSTG+ VSAGAAQAVA PYRTLF TLQQLL+GKEV Sbjct 1 MSPKVPFLRWDDPFRALEMLGSLWSSTGLQSVSAGAAQAVAMPYRTLFMTLQQLLVGKEV 60 Query 61 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR 120 TVR+GD DVVLTVTELDSAL+PQGLAVGQLGEVRVAAR +SWD+ L SAVAVLRNVHIR Sbjct 61 TVRMGDQDVVLTVTELDSALDPQGLAVGQLGEVRVAARDVSWDEQRLQSAVAVLRNVHIR 120 Query 121 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVD 180 PGVPP+V+AAPVELSS LP IFD+VL+Q PQLR ELSE G ARLRW+RRP+WGGLEVD Sbjct 121 PGVPPMVVAAPVELSSVLPAAIFDEVLQQVAPQLRSELSEDGTARLRWSRRPEWGGLEVD 180 Query 181 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL 240 DV G TTLWLRPR V+TG+RRW+LPAR PAY+VPLP LPHGL IT V+L D LQL Sbjct 181 ADVVG----TTLWLRPRAVMTGRRRWSLPARMPAYQVPLPPLPHGLLITHVNLGLDALQL 236 Query 241 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 280 SALLPEWR ELPLR+LE +IT+LSQGALSF WP L G+D Sbjct 237 SALLPEWRMELPLRHLEDLITRLSQGALSFSWPSLLRGSD 276 >gi|118618056|ref|YP_906388.1| hypothetical protein MUL_2579 [Mycobacterium ulcerans Agy99] gi|118570166|gb|ABL04917.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=276 Score = 402 bits (1032), Expect = 4e-110, Method: Compositional matrix adjust. Identities = 215/280 (77%), Positives = 238/280 (85%), Gaps = 4/280 (1%) Query 1 MSPRVPRLRWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEV 60 MSP+VP LRWDDPFRAL+ML SLWSSTG+ VSAGAAQAVA PYRTLF TLQQLL+GKEV Sbjct 1 MSPKVPFLRWDDPFRALEMLGSLWSSTGLQSVSAGAAQAVAMPYRTLFMTLQQLLVGKEV 60 Query 61 TVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIR 120 TVR+GD DVVLTVT LDSAL+PQGLAVGQLGEVRVAAR +SWD+ L SAVAVLRNVHIR Sbjct 61 TVRMGDQDVVLTVTGLDSALDPQGLAVGQLGEVRVAARDVSWDEQRLQSAVAVLRNVHIR 120 Query 121 PGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVD 180 PGVPP+V+AAPVELSS LP IFD+VL+Q PQLR ELSE G ARLRW+RRP+WGGLEVD Sbjct 121 PGVPPMVVAAPVELSSVLPAAIFDEVLQQVAPQLRSELSEDGTARLRWSRRPEWGGLEVD 180 Query 181 VDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQL 240 DV G TTL LRPR V+TG+RRW+LPAR PAY+VPLP LPHGL IT V+L D LQL Sbjct 181 ADVVG----TTLRLRPRAVMTGRRRWSLPARMPAYQVPLPPLPHGLLITHVNLGLDALQL 236 Query 241 SALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 280 SALLPEWR ELPLR+LE +IT+LSQGA SF WP L G+D Sbjct 237 SALLPEWRMELPLRHLEDLITRLSQGAFSFSWPSLLRGSD 276 >gi|289751937|ref|ZP_06511315.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289692524|gb|EFD59953.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=216 Score = 392 bits (1007), Expect = 3e-107, Method: Compositional matrix adjust. Identities = 202/202 (100%), Positives = 202/202 (100%), Gaps = 0/202 (0%) Query 25 SSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVLTVTELDSALEPQG 84 SSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVLTVTELDSALEPQG Sbjct 15 SSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVLTVTELDSALEPQG 74 Query 85 LAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAPVELSSALPTEIFD 144 LAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAPVELSSALPTEIFD Sbjct 75 LAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAPVELSSALPTEIFD 134 Query 145 DVLRQATPQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTTLWLRPRTVITGQR 204 DVLRQATPQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTTLWLRPRTVITGQR Sbjct 135 DVLRQATPQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTTLWLRPRTVITGQR 194 Query 205 RWTLPARTPAYRVPLPELPHGL 226 RWTLPARTPAYRVPLPELPHGL Sbjct 195 RWTLPARTPAYRVPLPELPHGL 216 >gi|289571470|ref|ZP_06451697.1| hypothetical protein TBJG_02001 [Mycobacterium tuberculosis T17] gi|289545224|gb|EFD48872.1| hypothetical protein TBJG_02001 [Mycobacterium tuberculosis T17] Length=174 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 173/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%) Query 107 LHSAVAVLRNVHIRPGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARL 166 +HSAVAVLRNVHIRPGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARL Sbjct 1 MHSAVAVLRNVHIRPGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARL 60 Query 167 RWARRPDWGGLEVDVDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGL 226 RWARRPDWGGLEVDVDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGL Sbjct 61 RWARRPDWGGLEVDVDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGL 120 Query 227 RITDVSLAADCLQLSALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 280 RITDVSLAADCLQLSALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD Sbjct 121 RITDVSLAADCLQLSALLPEWRTELPLRYLESVITQLSQGALSFVWPPLRSGAD 174 >gi|315444351|ref|YP_004077230.1| hypothetical protein Mspyr1_27660 [Mycobacterium sp. Spyr1] gi|315262654|gb|ADT99395.1| hypothetical protein Mspyr1_27660 [Mycobacterium sp. Spyr1] Length=244 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 119/240 (50%), Positives = 158/240 (66%), Gaps = 8/240 (3%) Query 12 DPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVL 71 DPFR +++L SLWS+ M V++GAA A YRTLF T+++L++G+ +TVR+GD DV L Sbjct 12 DPFRPVELLTSLWSTAAMVPVNSGAATA----YRTLFMTVRRLVLGRRLTVRLGDGDVRL 67 Query 72 TVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAP 131 TVT DS L+ GL+VGQL +V V A I W H A +L NVH++PG P +++AAP Sbjct 68 TVTRFDSRLDVHGLSVGQLNDVTVTAEDIDWRTTHFDQATVILHNVHMKPGAPVVLVAAP 127 Query 132 VELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTT 191 V+++ LP DD+LR A P+L G + E G ARL WA P G +EV+ + G +T Sbjct 128 VDVTLDLPAPALDDLLRAAAPRLAGRIGEDGVARLGWAGYPRLGHVEVEARIDG----ST 183 Query 192 LWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQLSALLPEWRTEL 251 LWL R V G RW LP RTPAY V LPE+ HGL++T V+ A +Q+S LPEWRTEL Sbjct 184 LWLTARRVGIGSTRWRLPGRTPAYPVSLPEMAHGLQLTAVTFAPGVVQISGRLPEWRTEL 243 >gi|145224015|ref|YP_001134693.1| hypothetical protein Mflv_3429 [Mycobacterium gilvum PYR-GCK] gi|145216501|gb|ABP45905.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=215 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 109/220 (50%), Positives = 144/220 (66%), Gaps = 8/220 (3%) Query 32 VSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHDVVLTVTELDSALEPQGLAVGQLG 91 V++GAA A YRTLF T+++L++G+ +TVR+GD DV LTVT DS L+ GL+VGQL Sbjct 3 VNSGAATA----YRTLFMTVRRLVLGRRLTVRLGDGDVRLTVTRFDSRLDVHGLSVGQLN 58 Query 92 EVRVAARGISWDQHHLHSAVAVLRNVHIRPGVPPLVIAAPVELSSALPTEIFDDVLRQAT 151 +V V A I W H A +L NVH++PG P +++AAPV+++ LP DD+LR A Sbjct 59 DVTVTAEDIDWRTTHFDQATVILHNVHMKPGAPVVLVAAPVDVTLDLPAPALDDLLRAAA 118 Query 152 PQLRGELSESGAARLRWARRPDWGGLEVDVDVAGTTSQTTLWLRPRTVITGQRRWTLPAR 211 P+L G + E G ARL WA P G +EV+ + G +TLWL R V G RW LP R Sbjct 119 PRLAGRIGEDGVARLGWAGYPRLGHVEVEARIDG----STLWLTARRVGIGSTRWRLPGR 174 Query 212 TPAYRVPLPELPHGLRITDVSLAADCLQLSALLPEWRTEL 251 TPAY V LPE+ HGL++T V+ A +Q+S LPEWRTEL Sbjct 175 TPAYPVSLPEMAHGLQLTAVTFAPGVVQISGRLPEWRTEL 214 >gi|333918056|ref|YP_004491637.1| hypothetical protein AS9A_0378 [Amycolicicoccus subflavus DQS3-9A1] gi|333480277|gb|AEF38837.1| hypothetical protein AS9A_0378 [Amycolicicoccus subflavus DQS3-9A1] Length=261 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/209 (25%), Positives = 96/209 (46%), Gaps = 4/209 (1%) Query 55 LIGKEVTVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAVL 114 L+G+ +T++ GD DV T E+DS GLA GQ+ +R A + W++ L Sbjct 49 LLGRRITIQTGDTDVSFTPVEIDSDFHTLGLATGQIAAIRFVANHVRWERTTLQRVEVTF 108 Query 115 RNVHIRPGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDW 174 + +R P ++ V + + + ++Q P + ++++ G + WAR P Sbjct 109 TDTRLRSLPAPYLVVGLVTVRITVTSTEVHHWVKQVAPDIHVDITKEGKVQASWARAPML 168 Query 175 GGLEVDVDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLA 234 G +E + T + ++L P + QR + R + + +P+LPHGL++T + Sbjct 169 GHIE----LRPTAGDSVIYLDPTGLQIWQRSLPVAHRMKPFAIAVPDLPHGLQLTSIETG 224 Query 235 ADCLQLSALLPEWRTELPLRYLESVITQL 263 + L L + R + L V+T L Sbjct 225 PEELILHGVTDRVRERISSMPLADVLTML 253 >gi|300783403|ref|YP_003763694.1| hypothetical protein AMED_1479 [Amycolatopsis mediterranei U32] gi|299792917|gb|ADJ43292.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340524788|gb|AEK39993.1| hypothetical protein RAM_07505 [Amycolatopsis mediterranei S699] Length=274 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 83/276 (31%), Positives = 129/276 (47%), Gaps = 19/276 (6%) Query 9 RWDDPFRALDMLASLWSSTGMSLVSAGAAQAVAAPYRTLFTTLQQLLIGKEVTVRIGDHD 68 RW D + LA L ++ G SL+ A L T+ + L+G+ +T ++G + Sbjct 5 RWFDGWSPWPELAGL-AAAGRSLLPNVPVTPAA-----LVRTVTEQLVGRRLTAQVGGRE 58 Query 69 VVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHH---------LHSAVAVLRNVHI 119 V LT+ ELD + LA G+LG+VR+ A + W + L +V + Sbjct 59 VGLTLAELDYPADSLRLATGRLGDVRIVAEDVDWPEPEDDGEPGTIPLRRVTVFAEDVRL 118 Query 120 RPGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPDWGGLEV 179 R P A V+L+ A+ E+ D + +A P + ++ G R+ WA+RP WG L + Sbjct 119 RSLPTPAAKPARVQLAIAVSAEVLQDRVAKARPGIVATPADGGLLRIHWAKRPHWGHLTL 178 Query 180 DVDVAGTTSQTTLWLRPRTVITGQRRWTLPARTPAYRVPLPELPHGLRITDVSLAADCLQ 239 VA + L P+T+ GQR+ P R +PLPELP GL +T V D L Sbjct 179 RPQVAA----DGVVLVPQTLHIGQRQLRPPRRFRPIVLPLPELPPGLNLTKVEPRHDELV 234 Query 240 LSALLPEWRTELPLRYLESVITQLSQGALSFVWPPL 275 L + EW L L +++ L+ A++ P L Sbjct 235 LHTVAEEWPDRLSRIPLPDLLSWLTTAAMTLTLPNL 270 >gi|302524773|ref|ZP_07277115.1| predicted protein [Streptomyces sp. AA4] gi|302433668|gb|EFL05484.1| predicted protein [Streptomyces sp. AA4] Length=165 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/162 (31%), Positives = 73/162 (46%), Gaps = 11/162 (6%) Query 115 RNVHIRPGVP-PLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPD 173 ++V +R G+P P I VEL + + D + A P L G ++RW + P Sbjct 4 KDVRLR-GLPSPAAIPGSVELEIEVSGTVVRDRVAAARPDLIATPHPEGF-QVRWRKHPR 61 Query 174 WGGLEVDVDVAGTTSQTTLWLRPRTVITGQRRWTL--PARTPAYRVPLPELPHGLRITDV 231 WG L + D+ + L P + G RWT P R +PLP+LP GLR+T + Sbjct 62 WGYLTLVADI----EDDAVVLTPTALCLG--RWTRRPPKRIQPIVLPLPDLPKGLRLTGI 115 Query 232 SLAADCLQLSALLPEWRTELPLRYLESVITQLSQGALSFVWP 273 D L L+ EW L L ++T L+ A++ P Sbjct 116 RPREDELALTIAADEWPGRLARIPLPDLLTWLTTAAMTLTLP 157 >gi|54027629|ref|YP_121871.1| hypothetical protein nfa56550 [Nocardia farcinica IFM 10152] gi|54019137|dbj|BAD60507.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=271 Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust. Identities = 66/257 (26%), Positives = 102/257 (40%), Gaps = 43/257 (16%) Query 13 PFRALDMLASLWSSTGMS------------LVSAGAAQAVAAPYRTLFTTLQQLLI---- 56 P RA+D+ L+ + + +V G+ A L T L + ++ Sbjct 12 PLRAIDIGRRLFEQSWLEQWLTTTAAWMDPVVDLGSGTVTALLPDVLMTVLSEGILSRFG 71 Query 57 GKEVTVRIGDHDVVLTVTELDSALEPQGLAVGQLG---EVRVAARGISWDQHHLHSAVAV 113 G+E+TV + H++ T+ Q L V + G + + + WD H L + + Sbjct 72 GQEITVTLVGHELHATL---------QVLKVRRRGAHFQTKTVLSRLRWDDHPLETVTVI 122 Query 114 LRNVHIRPGVPPLVIAAPVELSSALPTEIFDDVLRQATPQLRGELSESGAARLRWARRPD 173 V + PGVP V A +E+S + L E++ G R R R Sbjct 123 AHGVRLIPGVPSRVRTARLEVSGTVTLAALVAWLNTLPLAWHLEVTAEGDVRARHRRH-- 180 Query 174 WGGLEVDVDVAGTTSQTTLWLRPRTVITGQRRWT---LPARTPAYRV-PLPELPHGLRIT 229 L VD A T ++ TL +R + RW LP R V PL +LP LRI Sbjct 181 --ALTALVDGAVTDNRLTLRVR-------RARWRGIPLPRRLVDPPVLPLRDLPRDLRIV 231 Query 230 DVSLAADCLQLSALLPE 246 +L D ++ LPE Sbjct 232 CAALDGDLVRFELELPE 248 >gi|194367309|ref|YP_002029919.1| methyl-accepting chemotaxis sensory transducer [Stenotrophomonas maltophilia R551-3] gi|194350113|gb|ACF53236.1| methyl-accepting chemotaxis sensory transducer [Stenotrophomonas maltophilia R551-3] Length=843 Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust. Identities = 29/75 (39%), Positives = 41/75 (55%), Gaps = 5/75 (6%) Query 113 VLRNVHIRPGVPPLVIAAPV---ELSSALPTEIFDDVLR--QATPQLRGELSESGAARLR 167 +LR + IRP + +A+ V +L SALPT D+V R +A +RG+L AA+ Sbjct 346 LLRRLAIRPLAEAVRVASDVAAGKLDSALPTRSNDEVGRLLEAMQGMRGQLQSVMAAQSE 405 Query 168 WARRPDWGGLEVDVD 182 ARR D G L +D Sbjct 406 MARRHDAGELSYRMD 420 >gi|302205410|gb|ADL09752.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Corynebacterium pseudotuberculosis C231] gi|308275648|gb|ADO25547.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Corynebacterium pseudotuberculosis I19] gi|341824074|gb|AEK91595.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Corynebacterium pseudotuberculosis PAT10] Length=379 Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust. Identities = 35/123 (29%), Positives = 54/123 (44%), Gaps = 13/123 (10%) Query 54 LLIGKEVTVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAV 113 L++G + I D D+ + ++ + G+L VA G+ WD+ + A Sbjct 69 LIVGGGSNLVIADGDIPVVAVIVECKEMSADMHTGKL----VADAGVVWDEVVAFAVEAG 124 Query 114 LRNVHIRPGVPPLVIAAPVELSSALPTEIFD-----DVLRQATPQLRGELSESGAARLRW 168 L + G+P A PV+ A EI D ++L +AT GE+SE AA L Sbjct 125 LGGIECLSGIPGSAGATPVQNVGAYGVEIADVLVSVELLDRAT----GEVSEVPAAELDL 180 Query 169 ARR 171 A R Sbjct 181 AYR 183 >gi|300857671|ref|YP_003782654.1| UDP-N-acetylmuramate dehydrogenase [Corynebacterium pseudotuberculosis FRC41] gi|300685125|gb|ADK28047.1| UDP-N-acetylmuramate dehydrogenase [Corynebacterium pseudotuberculosis FRC41] gi|302329964|gb|ADL20158.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Corynebacterium pseudotuberculosis 1002] Length=379 Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust. Identities = 35/123 (29%), Positives = 54/123 (44%), Gaps = 13/123 (10%) Query 54 LLIGKEVTVRIGDHDVVLTVTELDSALEPQGLAVGQLGEVRVAARGISWDQHHLHSAVAV 113 L++G + I D D+ + ++ + G+L VA G+ WD+ + A Sbjct 69 LIVGGGSNLVIADGDIPVVAVIVECKEMSADMHTGKL----VADAGVVWDEVVAFAVEAG 124 Query 114 LRNVHIRPGVPPLVIAAPVELSSALPTEIFD-----DVLRQATPQLRGELSESGAARLRW 168 L + G+P A PV+ A EI D ++L +AT GE+SE AA L Sbjct 125 LGGIECLSGIPGSAGATPVQNVGAYGVEIADVLVSVELLDRAT----GEVSEVPAAELDL 180 Query 169 ARR 171 A R Sbjct 181 AYR 183 Lambda K H 0.320 0.135 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 442782057568 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40