BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3249c Length=211 Score E Sequences producing significant alignments: (Bits) Value gi|15610385|ref|NP_217766.1| TetR family transcriptional regulat... 419 2e-115 gi|15842838|ref|NP_337875.1| hypothetical protein MT3347 [Mycoba... 417 5e-115 gi|323718118|gb|EGB27300.1| transcriptional regulator [Mycobacte... 417 7e-115 gi|308232393|ref|ZP_07415915.2| transcriptional regulator, tetR-... 400 5e-110 gi|289751943|ref|ZP_06511321.1| LOW QUALITY PROTEIN: transcripti... 383 1e-104 gi|183981316|ref|YP_001849607.1| TetR family transcriptional reg... 380 8e-104 gi|240172608|ref|ZP_04751267.1| TetR family transcriptional regu... 379 2e-103 gi|118618064|ref|YP_906396.1| TetR family transcriptional regula... 378 4e-103 gi|296168956|ref|ZP_06850625.1| transcriptional regulator [Mycob... 368 3e-100 gi|167966697|ref|ZP_02548974.1| hypothetical protein MtubH3_0094... 362 2e-98 gi|336459675|gb|EGO38610.1| transcriptional regulator, tetR fami... 349 1e-94 gi|118466264|ref|YP_883354.1| transcriptional regulator [Mycobac... 347 8e-94 gi|342861452|ref|ZP_08718099.1| TetR family transcriptional regu... 339 2e-91 gi|254776648|ref|ZP_05218164.1| putative transcriptional regulat... 338 2e-91 gi|254822996|ref|ZP_05227997.1| TetR family transcriptional regu... 331 5e-89 gi|270268858|gb|ACZ65964.1| putative TetR family transcriptional... 320 6e-86 gi|145225296|ref|YP_001135974.1| TetR family transcriptional reg... 319 2e-85 gi|120402745|ref|YP_952574.1| TetR family transcriptional regula... 319 2e-85 gi|210076907|gb|ACJ06778.1| TetR family transcriptional regulato... 318 3e-85 gi|315445593|ref|YP_004078472.1| TetR family transcriptional reg... 318 5e-85 gi|118468884|ref|YP_886212.1| TetR family transcriptional regula... 314 4e-84 gi|108798306|ref|YP_638503.1| TetR family transcriptional regula... 311 6e-83 gi|126433973|ref|YP_001069664.1| TetR family transcriptional reg... 310 7e-83 gi|119867403|ref|YP_937355.1| TetR family transcriptional regula... 310 1e-82 gi|333991629|ref|YP_004524243.1| TetR family transcriptional reg... 306 1e-81 gi|115511391|dbj|BAF34302.1| putative transcriptional regulator ... 278 3e-73 gi|169630676|ref|YP_001704325.1| TetR family transcriptional reg... 265 4e-69 gi|226365791|ref|YP_002783574.1| TetR family transcriptional reg... 243 2e-62 gi|111023284|ref|YP_706256.1| TetR family transcriptional regula... 242 3e-62 gi|15420779|gb|AAK97457.1|AF388182_5 putative regulator [Rhodoco... 238 3e-61 gi|317506297|ref|ZP_07964111.1| tetR family bacterial regulatory... 238 6e-61 gi|296393191|ref|YP_003658075.1| TetR family transcriptional reg... 236 1e-60 gi|226305652|ref|YP_002765612.1| TetR family transcriptional reg... 236 1e-60 gi|229489669|ref|ZP_04383532.1| transcriptional regulator, TetR ... 235 3e-60 gi|238734618|gb|ACR55692.1| putative regulatory protein [Geobaci... 234 9e-60 gi|226349676|ref|YP_002776790.1| putative TetR family transcript... 229 1e-58 gi|325675691|ref|ZP_08155375.1| transcriptional regulator [Rhodo... 229 2e-58 gi|298526725|ref|ZP_07014134.1| transcriptional regulatory prote... 227 7e-58 gi|312140679|ref|YP_004008015.1| tetr family transcriptional reg... 225 3e-57 gi|54026588|ref|YP_120830.1| putative transcriptional regulator ... 220 1e-55 gi|343924858|ref|ZP_08764396.1| putative TetR family transcripti... 196 1e-48 gi|13750761|emb|CAC37041.1| unnamed protein product [Rhodococcus... 193 1e-47 gi|315143110|gb|ADT82705.1| putative TetR family transcriptional... 187 7e-46 gi|226361675|ref|YP_002779453.1| TetR family transcriptional reg... 181 5e-44 gi|111019529|ref|YP_702501.1| TetR family transcriptional regula... 180 9e-44 gi|319948106|ref|ZP_08022270.1| putative transcriptional regulat... 169 2e-40 gi|224797150|gb|ACN62570.1| TetR family transcriptional regulato... 168 6e-40 gi|240171856|ref|ZP_04750515.1| TetR family transcriptional regu... 166 3e-39 gi|326383566|ref|ZP_08205252.1| putative transcriptional regulat... 163 1e-38 gi|343916447|gb|AEM66515.1| TetR transcriptional regulatory prot... 161 5e-38 >gi|15610385|ref|NP_217766.1| TetR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|31794429|ref|NP_856922.1| TetR family transcriptional regulator [Mycobacterium bovis AF2122/97] gi|121639138|ref|YP_979362.1| TetR family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] 48 more sequence titles Length=211 Score = 419 bits (1076), Expect = 2e-115, Method: Compositional matrix adjust. Identities = 210/211 (99%), Positives = 211/211 (100%), Gaps = 0/211 (0%) Query 1 VSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 +STPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI Sbjct 1 MSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 Query 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS 120 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS Sbjct 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS 120 Query 121 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYV 180 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYV Sbjct 121 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYV 180 Query 181 SMPPEADHDVAADLARLITPFAERHGVINVP 211 SMPPEADHDVAADLARLITPFAERHGVINVP Sbjct 181 SMPPEADHDVAADLARLITPFAERHGVINVP 211 >gi|15842838|ref|NP_337875.1| hypothetical protein MT3347 [Mycobacterium tuberculosis CDC1551] gi|13883167|gb|AAK47689.1| hypothetical protein MT3347 [Mycobacterium tuberculosis CDC1551] Length=230 Score = 417 bits (1072), Expect = 5e-115, Method: Compositional matrix adjust. Identities = 210/211 (99%), Positives = 210/211 (99%), Gaps = 0/211 (0%) Query 1 VSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 VSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI Sbjct 20 VSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 79 Query 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS 120 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS Sbjct 80 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS 139 Query 121 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYV 180 LLTGVAKPDLLQLITTDSAPIITRASARLAPAF DTWVATTDNDANVLSRAIVRLCLSYV Sbjct 140 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFADTWVATTDNDANVLSRAIVRLCLSYV 199 Query 181 SMPPEADHDVAADLARLITPFAERHGVINVP 211 SMPPEADHDVAADLARLITPFAERHGVINVP Sbjct 200 SMPPEADHDVAADLARLITPFAERHGVINVP 230 >gi|323718118|gb|EGB27300.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] Length=211 Score = 417 bits (1071), Expect = 7e-115, Method: Compositional matrix adjust. Identities = 209/211 (99%), Positives = 210/211 (99%), Gaps = 0/211 (0%) Query 1 VSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 +STPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI Sbjct 1 MSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 Query 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS 120 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS Sbjct 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS 120 Query 121 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYV 180 LLTGVAKPDLLQLITTDSAPIITRASARLAPAF DTWVATTDNDANVLSRAIVRLCLSYV Sbjct 121 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFADTWVATTDNDANVLSRAIVRLCLSYV 180 Query 181 SMPPEADHDVAADLARLITPFAERHGVINVP 211 SMPPEADHDVAADLARLITPFAERHGVINVP Sbjct 181 SMPPEADHDVAADLARLITPFAERHGVINVP 211 >gi|308232393|ref|ZP_07415915.2| transcriptional regulator, tetR-family [Mycobacterium tuberculosis SUMu001] gi|308370204|ref|ZP_07420636.2| transcriptional regulator, tetR-family [Mycobacterium tuberculosis SUMu002] gi|308371287|ref|ZP_07424443.2| transcriptional regulator, tetR-family [Mycobacterium tuberculosis SUMu003] 21 more sequence titles Length=201 Score = 400 bits (1029), Expect = 5e-110, Method: Compositional matrix adjust. Identities = 200/201 (99%), Positives = 201/201 (100%), Gaps = 0/201 (0%) Query 11 VKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGL 70 +KRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGL Sbjct 1 MKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGL 60 Query 71 AQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDL 130 AQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDL Sbjct 61 AQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDL 120 Query 131 LQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDV 190 LQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDV Sbjct 121 LQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDV 180 Query 191 AADLARLITPFAERHGVINVP 211 AADLARLITPFAERHGVINVP Sbjct 181 AADLARLITPFAERHGVINVP 201 >gi|289751943|ref|ZP_06511321.1| LOW QUALITY PROTEIN: transcriptional regulator, tetR-family [Mycobacterium tuberculosis T92] gi|289692530|gb|EFD59959.1| LOW QUALITY PROTEIN: transcriptional regulator, tetR-family [Mycobacterium tuberculosis T92] Length=199 Score = 383 bits (983), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 192/193 (99%), Positives = 193/193 (100%), Gaps = 0/193 (0%) Query 19 ASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRL 78 +SRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRL Sbjct 7 SSRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRL 66 Query 79 ADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDS 138 ADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDS Sbjct 67 ADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDS 126 Query 139 APIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLI 198 APIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLI Sbjct 127 APIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLI 186 Query 199 TPFAERHGVINVP 211 TPFAERHGVINVP Sbjct 187 TPFAERHGVINVP 199 >gi|183981316|ref|YP_001849607.1| TetR family transcriptional regulator [Mycobacterium marinum M] gi|183174642|gb|ACC39752.1| transcriptional regulatory protein (probably TetR-family) [Mycobacterium marinum M] Length=216 Score = 380 bits (976), Expect = 8e-104, Method: Compositional matrix adjust. Identities = 188/204 (93%), Positives = 196/204 (97%), Gaps = 0/204 (0%) Query 8 VAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSR 67 V PVKR+PYAEASR LLRDSVLDAMRDLLLTRDWSAITLSDVAR+AGISRQTIYNEFGSR Sbjct 13 VGPVKRVPYAEASRVLLRDSVLDAMRDLLLTRDWSAITLSDVARSAGISRQTIYNEFGSR 72 Query 68 QGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAK 127 QGLAQGYALRLADRLVD VHA+LDANVGN YEAFLQGFRSFF ESAADPLVISLLTGVAK Sbjct 73 QGLAQGYALRLADRLVDKVHAALDANVGNIYEAFLQGFRSFFGESAADPLVISLLTGVAK 132 Query 128 PDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEAD 187 PDLLQLITTDSAPIITRASARLA AFT TWVAT+D+DANVL+RAIVRL LSYVSMPPEAD Sbjct 133 PDLLQLITTDSAPIITRASARLATAFTQTWVATSDDDANVLARAIVRLSLSYVSMPPEAD 192 Query 188 HDVAADLARLITPFAERHGVINVP 211 H+VAADLARL+TPFAERHGVINVP Sbjct 193 HNVAADLARLMTPFAERHGVINVP 216 >gi|240172608|ref|ZP_04751267.1| TetR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length=215 Score = 379 bits (972), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 187/204 (92%), Positives = 195/204 (96%), Gaps = 0/204 (0%) Query 8 VAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSR 67 VAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAG+SRQTIYNEFGSR Sbjct 12 VAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGVSRQTIYNEFGSR 71 Query 68 QGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAK 127 QGLAQGYALRL DRLVD VHASLDANVGN +E+FLQGFR+FFAESAADPLVISLLTG AK Sbjct 72 QGLAQGYALRLTDRLVDRVHASLDANVGNIFESFLQGFRAFFAESAADPLVISLLTGAAK 131 Query 128 PDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEAD 187 PDLLQLITTDSAPII RASARLA AFT TWVAT+D+DA VLSRAIVRLCLSYV MPPEAD Sbjct 132 PDLLQLITTDSAPIINRASARLAKAFTQTWVATSDDDAGVLSRAIVRLCLSYVPMPPEAD 191 Query 188 HDVAADLARLITPFAERHGVINVP 211 HDVAADLARL+TPFAERHGVIN+P Sbjct 192 HDVAADLARLMTPFAERHGVINIP 215 >gi|118618064|ref|YP_906396.1| TetR family transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118570174|gb|ABL04925.1| transcriptional regulatory protein (probably TetR-family) [Mycobacterium ulcerans Agy99] Length=235 Score = 378 bits (970), Expect = 4e-103, Method: Compositional matrix adjust. Identities = 187/204 (92%), Positives = 195/204 (96%), Gaps = 0/204 (0%) Query 8 VAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSR 67 V PVKR+PYAEASR LLRDSVLDAMRDLL TRDWSAITLSDVAR+AGISRQTIYNEFGSR Sbjct 32 VGPVKRVPYAEASRVLLRDSVLDAMRDLLFTRDWSAITLSDVARSAGISRQTIYNEFGSR 91 Query 68 QGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAK 127 QGLAQGYALRLADRLVD VHA+LDANVGN YEAFLQGFRSFF ESAADPLVISLLTGVAK Sbjct 92 QGLAQGYALRLADRLVDKVHAALDANVGNIYEAFLQGFRSFFGESAADPLVISLLTGVAK 151 Query 128 PDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEAD 187 PDLLQLITTDSAPIITRASARLA AFT TWVAT+D+DANVL+RAIVRL LSYVSMPPEAD Sbjct 152 PDLLQLITTDSAPIITRASARLATAFTQTWVATSDDDANVLARAIVRLSLSYVSMPPEAD 211 Query 188 HDVAADLARLITPFAERHGVINVP 211 H+VAADLARL+TPFAERHGVINVP Sbjct 212 HNVAADLARLMTPFAERHGVINVP 235 >gi|296168956|ref|ZP_06850625.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896425|gb|EFG76078.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=227 Score = 368 bits (944), Expect = 3e-100, Method: Compositional matrix adjust. Identities = 179/206 (87%), Positives = 194/206 (95%), Gaps = 0/206 (0%) Query 6 ATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFG 65 A VAPVKR+PY EASR LLRDSVLDAMR+LLLTRDWSA+TLSDVARAAGISRQTIYNEFG Sbjct 22 AIVAPVKRMPYPEASRVLLRDSVLDAMRELLLTRDWSAVTLSDVARAAGISRQTIYNEFG 81 Query 66 SRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGV 125 SRQGLAQGYALRLADRLVD V A++DANVGN YEAFLQGFR+FFAESAADPLVISLLTGV Sbjct 82 SRQGLAQGYALRLADRLVDAVQAAIDANVGNIYEAFLQGFRAFFAESAADPLVISLLTGV 141 Query 126 AKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPE 185 AKPDLLQ+ITTDS PIITRAS RL+ AFT++WVAT+D DA VL+RAIVRL +SYVSMPPE Sbjct 142 AKPDLLQIITTDSGPIITRASGRLSAAFTNSWVATSDEDAGVLARAIVRLAMSYVSMPPE 201 Query 186 ADHDVAADLARLITPFAERHGVINVP 211 ADHDVAADLARL+TPFAERHGV+NVP Sbjct 202 ADHDVAADLARLMTPFAERHGVVNVP 227 >gi|167966697|ref|ZP_02548974.1| hypothetical protein MtubH3_00943 [Mycobacterium tuberculosis H37Ra] Length=180 Score = 362 bits (930), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 180/180 (100%), Positives = 180/180 (100%), Gaps = 0/180 (0%) Query 32 MRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLD 91 MRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLD Sbjct 1 MRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLD 60 Query 92 ANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAP 151 ANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAP Sbjct 61 ANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAP 120 Query 152 AFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGVINVP 211 AFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGVINVP Sbjct 121 AFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGVINVP 180 >gi|336459675|gb|EGO38610.1| transcriptional regulator, tetR family [Mycobacterium avium subsp. paratuberculosis S397] Length=210 Score = 349 bits (896), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 175/203 (87%), Positives = 187/203 (93%), Gaps = 0/203 (0%) Query 8 VAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSR 67 VA VKR+PYAEASRALLRDSVLDAMRDLL+TRDWSAITLSDVARAAGISRQTIYNEFGSR Sbjct 7 VAAVKRMPYAEASRALLRDSVLDAMRDLLVTRDWSAITLSDVARAAGISRQTIYNEFGSR 66 Query 68 QGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAK 127 QGLAQGYALRLADRLVD +H +LDA+VGN YE+FL FR FFA++AADPLV SL TGVAK Sbjct 67 QGLAQGYALRLADRLVDTIHEALDAHVGNIYESFLDAFRRFFADAAADPLVTSLRTGVAK 126 Query 128 PDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEAD 187 PDLLQLITTDSA IITRASARLA A T TWV+TTD DA VL+RAIVRL LSYVSMPPEAD Sbjct 127 PDLLQLITTDSAVIITRASARLASALTHTWVSTTDEDAGVLARAIVRLALSYVSMPPEAD 186 Query 188 HDVAADLARLITPFAERHGVINV 210 HDVAADLARL+TPFAERHGV+NV Sbjct 187 HDVAADLARLMTPFAERHGVVNV 209 >gi|118466264|ref|YP_883354.1| transcriptional regulator [Mycobacterium avium 104] gi|118167551|gb|ABK68448.1| putative transcriptional regulatory protein [Mycobacterium avium 104] Length=201 Score = 347 bits (889), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 172/200 (86%), Positives = 185/200 (93%), Gaps = 0/200 (0%) Query 11 VKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGL 70 +KR+PYAEASRALLRDSVLDAMRDLL+TRDWSAITLSDVARAAGISRQTIYNEFGSRQGL Sbjct 1 MKRMPYAEASRALLRDSVLDAMRDLLVTRDWSAITLSDVARAAGISRQTIYNEFGSRQGL 60 Query 71 AQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDL 130 AQGYALRLADRLVD +H +LDA+VGN YE+FL FR FFA++AADPLV SL TGVAKPDL Sbjct 61 AQGYALRLADRLVDTIHEALDAHVGNIYESFLDAFRRFFADAAADPLVTSLRTGVAKPDL 120 Query 131 LQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDV 190 LQLITTDSA IITRASARLA A T TWV+TTD DA VL+RAIVRL LSYVSMPPEADHDV Sbjct 121 LQLITTDSAVIITRASARLASALTHTWVSTTDEDAGVLARAIVRLALSYVSMPPEADHDV 180 Query 191 AADLARLITPFAERHGVINV 210 AADLARL+TPFAERHGV+NV Sbjct 181 AADLARLMTPFAERHGVVNV 200 >gi|342861452|ref|ZP_08718099.1| TetR family transcriptional regulator [Mycobacterium colombiense CECT 3035] gi|342130941|gb|EGT84230.1| TetR family transcriptional regulator [Mycobacterium colombiense CECT 3035] Length=198 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 168/198 (85%), Positives = 181/198 (92%), Gaps = 0/198 (0%) Query 14 IPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQG 73 +PYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVAR+AGISRQTIYNEFGSRQGLAQG Sbjct 1 MPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARSAGISRQTIYNEFGSRQGLAQG 60 Query 74 YALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQL 133 Y LRLADRLVD V+A+L+ANVGN +EAFL+GFR F E +ADPLVISLLTGVAKPDLLQL Sbjct 61 YGLRLADRLVDAVNAALEANVGNIFEAFLRGFRDLFTELSADPLVISLLTGVAKPDLLQL 120 Query 134 ITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAAD 193 ITTDSAPII RAS RL A T +WVAT+D DA VL+RAIVRL LSYVSMPPEADHDVAAD Sbjct 121 ITTDSAPIINRASERLTAALTHSWVATSDEDAGVLARAIVRLALSYVSMPPEADHDVAAD 180 Query 194 LARLITPFAERHGVINVP 211 LARL+TPFAE HGVIN+P Sbjct 181 LARLMTPFAEHHGVINIP 198 >gi|254776648|ref|ZP_05218164.1| putative transcriptional regulatory protein [Mycobacterium avium subsp. avium ATCC 25291] Length=198 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 169/197 (86%), Positives = 181/197 (92%), Gaps = 0/197 (0%) Query 14 IPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQG 73 +PYAEASRALLRDSVLDAMRDLL+TRDWSAITLSDVA AAGISRQTIYNEFGSRQGLAQG Sbjct 1 MPYAEASRALLRDSVLDAMRDLLVTRDWSAITLSDVAGAAGISRQTIYNEFGSRQGLAQG 60 Query 74 YALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQL 133 YALRLADRLVD +H +LDA+VGN YE+FL FR FFA++AADPLV SL TGVAKPDLLQL Sbjct 61 YALRLADRLVDTIHEALDAHVGNIYESFLDAFRRFFADAAADPLVTSLRTGVAKPDLLQL 120 Query 134 ITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAAD 193 ITTDSA IITRASARLA A T TWV+TTD DA VL+RAIVRL LSYVSMPPEADHDVAAD Sbjct 121 ITTDSAVIITRASARLASALTHTWVSTTDEDAGVLARAIVRLALSYVSMPPEADHDVAAD 180 Query 194 LARLITPFAERHGVINV 210 LARL+TPFAERHGV+NV Sbjct 181 LARLMTPFAERHGVVNV 197 >gi|254822996|ref|ZP_05227997.1| TetR family transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length=198 Score = 331 bits (848), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 165/198 (84%), Positives = 178/198 (90%), Gaps = 0/198 (0%) Query 14 IPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQG 73 +PYAEASRALLRDSVLDAMR+ LLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQG Sbjct 1 MPYAEASRALLRDSVLDAMREELLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQG 60 Query 74 YALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQL 133 Y LRLADRLVD V+A+L A+VG+ Y AFLQGFR F E +ADPLVISLLTGVAKPDLLQ+ Sbjct 61 YGLRLADRLVDAVNAALGAHVGDIYAAFLQGFRDLFTELSADPLVISLLTGVAKPDLLQI 120 Query 134 ITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAAD 193 ITT SAPIITRAS RL A T +WVAT+D DA VL+RAIVRL LSYVSMPPEADHDVAAD Sbjct 121 ITTGSAPIITRASERLTTALTHSWVATSDEDAGVLARAIVRLALSYVSMPPEADHDVAAD 180 Query 194 LARLITPFAERHGVINVP 211 LARL+TPFAERHGV+ VP Sbjct 181 LARLMTPFAERHGVVKVP 198 >gi|270268858|gb|ACZ65964.1| putative TetR family transcriptional regulator [Mycobacterium chubuense NBB4] Length=245 Score = 320 bits (821), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 159/219 (73%), Positives = 181/219 (83%), Gaps = 13/219 (5%) Query 1 VSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 VS PS KRI YAEASR LLRDS+LD MR+LLLTRDWSAITLSDVA+AAGISRQTI Sbjct 32 VSGPSE-----KRITYAEASRVLLRDSILDGMRELLLTRDWSAITLSDVAKAAGISRQTI 86 Query 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS 120 YNEFGSRQGLAQGYALRLADRLVD +HA+++ NVG+ Y AFLQGFR FF ESAADPLVIS Sbjct 87 YNEFGSRQGLAQGYALRLADRLVDQIHAAINGNVGDVYAAFLQGFRDFFTESAADPLVIS 146 Query 121 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYV 180 LLTG +KPDLLQ+ITTDSAPIITR S RL F ++WV ++ DA VL+RAIVRL +SY+ Sbjct 147 LLTGTSKPDLLQIITTDSAPIITRCSQRLTDTFMNSWVRCSEEDAGVLARAIVRLAMSYI 206 Query 181 SMPPEAD--------HDVAADLARLITPFAERHGVINVP 211 SMPPE+D HDVA DLARL++PFAER+GVI+ P Sbjct 207 SMPPESDSGTSSARGHDVARDLARLMSPFAERYGVIDTP 245 >gi|145225296|ref|YP_001135974.1| TetR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145217782|gb|ABP47186.1| transcriptional regulator, TetR family [Mycobacterium gilvum PYR-GCK] Length=260 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 156/209 (75%), Positives = 176/209 (85%), Gaps = 5/209 (2%) Query 8 VAPV-----KRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYN 62 VAPV KRI YAEASR LLRDS+LD MR++LL RDWS ITLSDVA+AAGISRQTIYN Sbjct 40 VAPVGGGNDKRISYAEASRVLLRDSILDGMREMLLARDWSQITLSDVAKAAGISRQTIYN 99 Query 63 EFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLL 122 EFGSRQGLAQGYA+RLADRLVD +HA++D NVG+ Y AFLQGFR FF ESAADPLVISLL Sbjct 100 EFGSRQGLAQGYAMRLADRLVDQIHAAIDNNVGDMYAAFLQGFRDFFVESAADPLVISLL 159 Query 123 TGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSM 182 TG +KPDLLQLITTDSAPII S+RL + +WV ++ DA VLSRAIVRL +SY+SM Sbjct 160 TGSSKPDLLQLITTDSAPIINHCSSRLTESLMGSWVRCSEEDAGVLSRAIVRLAMSYISM 219 Query 183 PPEADHDVAADLARLITPFAERHGVINVP 211 PPEADHDVA DLARL+TPFAER+GV+ P Sbjct 220 PPEADHDVARDLARLMTPFAERYGVVADP 248 >gi|120402745|ref|YP_952574.1| TetR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955563|gb|ABM12568.1| transcriptional regulator, TetR family [Mycobacterium vanbaalenii PYR-1] Length=243 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 150/198 (76%), Positives = 172/198 (87%), Gaps = 0/198 (0%) Query 12 KRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLA 71 KR+ YAEASR LLRDS+LD MR++LLTRDWSAITLSDVA+AAGISRQTIYNEFGSRQGLA Sbjct 45 KRVSYAEASRVLLRDSILDGMREMLLTRDWSAITLSDVAKAAGISRQTIYNEFGSRQGLA 104 Query 72 QGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLL 131 QGYA+RLADRLVD +H +++ N G+ Y AFLQGFR FF ESAADPLVISLLTG +KPDLL Sbjct 105 QGYAMRLADRLVDQIHGAINGNAGDVYAAFLQGFRDFFVESAADPLVISLLTGTSKPDLL 164 Query 132 QLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVA 191 QLITTDSAPII S+RL +F +WV + DA VL+RAIVRL +SY+SMPPEADHDVA Sbjct 165 QLITTDSAPIINHCSSRLTESFMSSWVRVSQEDAGVLARAIVRLAMSYISMPPEADHDVA 224 Query 192 ADLARLITPFAERHGVIN 209 DLARL+TPFAER+GVI+ Sbjct 225 RDLARLMTPFAERYGVID 242 >gi|210076907|gb|ACJ06778.1| TetR family transcriptional regulator [Mycobacterium austroafricanum] Length=243 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 150/198 (76%), Positives = 172/198 (87%), Gaps = 0/198 (0%) Query 12 KRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLA 71 KR+ YAEASR LLRDS+LD MR++LLTRDWSAITLSDVA+AAGISRQTIYNEFGSRQGLA Sbjct 45 KRVSYAEASRVLLRDSILDGMREMLLTRDWSAITLSDVAKAAGISRQTIYNEFGSRQGLA 104 Query 72 QGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLL 131 QGYA+RLADRLVD +H +++ N G+ Y AFLQGFR FF ESAADPLVISLLTG +KPDLL Sbjct 105 QGYAMRLADRLVDQIHGAINGNAGDVYAAFLQGFRDFFVESAADPLVISLLTGTSKPDLL 164 Query 132 QLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVA 191 QLITTDSAPII S+RL +F +WV + DA VL+RAIVRL +SY+SMPPEADHDVA Sbjct 165 QLITTDSAPIINHCSSRLTESFMSSWVRCSQEDAGVLARAIVRLAMSYISMPPEADHDVA 224 Query 192 ADLARLITPFAERHGVIN 209 DLARL+TPFAER+GVI+ Sbjct 225 RDLARLMTPFAERYGVID 242 >gi|315445593|ref|YP_004078472.1| TetR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|315263896|gb|ADU00638.1| transcriptional regulator, TetR family [Mycobacterium sp. Spyr1] Length=218 Score = 318 bits (814), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 152/200 (76%), Positives = 172/200 (86%), Gaps = 0/200 (0%) Query 12 KRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLA 71 KRI YAEASR LLRDS+LD MR++LL RDWS ITLSDVA+AAGISRQTIYNEFGSRQGLA Sbjct 7 KRISYAEASRVLLRDSILDGMREMLLARDWSQITLSDVAKAAGISRQTIYNEFGSRQGLA 66 Query 72 QGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLL 131 QGYA+RLADRLVD +HA++D NVG+ Y AFLQGFR FF ESAADPLVISLLTG +KPDLL Sbjct 67 QGYAMRLADRLVDQIHAAIDNNVGDMYAAFLQGFRDFFVESAADPLVISLLTGSSKPDLL 126 Query 132 QLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVA 191 QLITTDSAPII S+RL + +WV ++ DA VLSRAIVRL +SY+SMPPEADHDVA Sbjct 127 QLITTDSAPIINHCSSRLTESLMGSWVRCSEEDAGVLSRAIVRLAMSYISMPPEADHDVA 186 Query 192 ADLARLITPFAERHGVINVP 211 DLARL+TPFAER+GV+ P Sbjct 187 RDLARLMTPFAERYGVVADP 206 >gi|118468884|ref|YP_886212.1| TetR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118170171|gb|ABK71067.1| transcriptional regulator, TetR family protein [Mycobacterium smegmatis str. MC2 155] Length=241 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 154/211 (73%), Positives = 178/211 (85%), Gaps = 4/211 (1%) Query 1 VSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 VS P A +R+PYAEASR LLRDS+LD MRDLLLTRDWSAITLS VA+AAG+SRQTI Sbjct 35 VSRPRAK----QRMPYAEASRVLLRDSILDGMRDLLLTRDWSAITLSHVAQAAGVSRQTI 90 Query 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS 120 YNEFGSRQGLA+GYA+RLADRLVD V +++ NVG+ Y AFL+GFR+FFAESAADPLVIS Sbjct 91 YNEFGSRQGLAEGYAMRLADRLVDAVDDAINNNVGDVYAAFLEGFRAFFAESAADPLVIS 150 Query 121 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYV 180 LLTG AKPDLLQ+IT S PIITR S RL F +W+ +D+DA VL+RAIVRL +SYV Sbjct 151 LLTGAAKPDLLQIITIGSGPIITRCSERLTATFQSSWIKASDDDAGVLARAIVRLAMSYV 210 Query 181 SMPPEADHDVAADLARLITPFAERHGVINVP 211 SMPPEADHDVA DLARL++PFAER+GVI+ P Sbjct 211 SMPPEADHDVAGDLARLMSPFAERYGVIDTP 241 >gi|108798306|ref|YP_638503.1| TetR family transcriptional regulator [Mycobacterium sp. MCS] gi|108768725|gb|ABG07447.1| transcriptional regulator, TetR family [Mycobacterium sp. MCS] Length=235 Score = 311 bits (796), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 148/198 (75%), Positives = 170/198 (86%), Gaps = 0/198 (0%) Query 12 KRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLA 71 +R+PYAEASR LLRDS+LD MRDLL +RDWS+ITL+DVA+AAGISRQTIYNEFGSR GLA Sbjct 25 RRVPYAEASRVLLRDSILDGMRDLLRSRDWSSITLTDVAKAAGISRQTIYNEFGSRHGLA 84 Query 72 QGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLL 131 QGYALRLADRLVD V +++ NVG Y AFL+GFR+FF ESAADPLVISLL+G KPDLL Sbjct 85 QGYALRLADRLVDAVDEAIEGNVGEVYAAFLEGFRAFFTESAADPLVISLLSGDTKPDLL 144 Query 132 QLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVA 191 Q+ITTDS PIITR S RL F ++WV +D DA +L+RAIVRL +SYVSMPPEADHDVA Sbjct 145 QIITTDSGPIITRCSDRLTSTFRNSWVKASDEDAGILARAIVRLAMSYVSMPPEADHDVA 204 Query 192 ADLARLITPFAERHGVIN 209 DLARL+TPFAER+GVI Sbjct 205 GDLARLMTPFAERYGVIE 222 >gi|126433973|ref|YP_001069664.1| TetR family transcriptional regulator [Mycobacterium sp. JLS] gi|126233773|gb|ABN97173.1| transcriptional regulator, TetR family [Mycobacterium sp. JLS] Length=274 Score = 310 bits (795), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 150/209 (72%), Positives = 173/209 (83%), Gaps = 0/209 (0%) Query 1 VSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 S P + +R+PYAEASR LLRDS+LD MRDLL +RDWS+ITL+DVA+AAGISRQTI Sbjct 53 TSLPRVSSPRDRRVPYAEASRVLLRDSILDGMRDLLRSRDWSSITLTDVAKAAGISRQTI 112 Query 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS 120 YNEFGSR GLAQGYALRLADRLVD V +++ NVG Y AFL+GFR+FF ESAADPLVIS Sbjct 113 YNEFGSRHGLAQGYALRLADRLVDAVDEAIEGNVGEVYAAFLEGFRAFFTESAADPLVIS 172 Query 121 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYV 180 LL+G KPDLLQ+ITTDS PIITR S RL F ++WV +D DA +L+RAIVRL +SYV Sbjct 173 LLSGDTKPDLLQIITTDSGPIITRCSDRLTSTFRNSWVKASDEDAGILARAIVRLAMSYV 232 Query 181 SMPPEADHDVAADLARLITPFAERHGVIN 209 SMPPEADHDVA DLARL+TPFAER+GVI Sbjct 233 SMPPEADHDVAGDLARLMTPFAERYGVIE 261 >gi|119867403|ref|YP_937355.1| TetR family transcriptional regulator [Mycobacterium sp. KMS] gi|119693492|gb|ABL90565.1| transcriptional regulator, TetR family [Mycobacterium sp. KMS] Length=217 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 148/198 (75%), Positives = 170/198 (86%), Gaps = 0/198 (0%) Query 12 KRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLA 71 +R+PYAEASR LLRDS+LD MRDLL +RDWS+ITL+DVA+AAGISRQTIYNEFGSR GLA Sbjct 7 RRVPYAEASRVLLRDSILDGMRDLLRSRDWSSITLTDVAKAAGISRQTIYNEFGSRHGLA 66 Query 72 QGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLL 131 QGYALRLADRLVD V +++ NVG Y AFL+GFR+FF ESAADPLVISLL+G KPDLL Sbjct 67 QGYALRLADRLVDAVDEAIEGNVGEVYAAFLEGFRAFFTESAADPLVISLLSGDTKPDLL 126 Query 132 QLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVA 191 Q+ITTDS PIITR S RL F ++WV +D DA +L+RAIVRL +SYVSMPPEADHDVA Sbjct 127 QIITTDSGPIITRCSDRLTSTFRNSWVKASDEDAGILARAIVRLAMSYVSMPPEADHDVA 186 Query 192 ADLARLITPFAERHGVIN 209 DLARL+TPFAER+GVI Sbjct 187 GDLARLMTPFAERYGVIE 204 >gi|333991629|ref|YP_004524243.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601] gi|333487597|gb|AEF36989.1| TetR family transcriptional regulator [Mycobacterium sp. JDM601] Length=200 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 148/200 (74%), Positives = 174/200 (87%), Gaps = 0/200 (0%) Query 11 VKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGL 70 +KR+PYAEASRALLRDSVLDAMR+LL +RDWS+ITL+ VA AAG+SRQTIYNEFGSRQGL Sbjct 1 MKRVPYAEASRALLRDSVLDAMRELLTSRDWSSITLAAVAEAAGVSRQTIYNEFGSRQGL 60 Query 71 AQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDL 130 AQGYA+RLADRLVD V ++ NVG+ + AFL+GFRSFF+ SAADPLVISLLTG AKPDL Sbjct 61 AQGYAIRLADRLVDAVERAIYDNVGDVHAAFLEGFRSFFSSSAADPLVISLLTGAAKPDL 120 Query 131 LQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDV 190 LQ+ITTDS PIITR SARL +F +WV ++ DA +L+RAIVRL +SYVSMPPEADHDV Sbjct 121 LQIITTDSGPIITRCSARLTSSFMHSWVKASEEDAGILARAIVRLAMSYVSMPPEADHDV 180 Query 191 AADLARLITPFAERHGVINV 210 AADLARL TP AE +GV+++ Sbjct 181 AADLARLFTPAAETYGVLDI 200 >gi|115511391|dbj|BAF34302.1| putative transcriptional regulator [Mycobacterium sp. TY-6] Length=190 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 137/185 (75%), Positives = 161/185 (88%), Gaps = 2/185 (1%) Query 5 SATVAPVK--RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYN 62 + T+A VK R+PY EASRALLRDSVLDAMR+ LLT+DWSAITLSDVAR AG+SRQTIYN Sbjct 2 TTTLAHVKSPRVPYPEASRALLRDSVLDAMREELLTKDWSAITLSDVARTAGVSRQTIYN 61 Query 63 EFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLL 122 EFGSRQGLAQGYA+RLADRLVD + ++ +NVG+ AF +GFR FF ESAADPLVISLL Sbjct 62 EFGSRQGLAQGYAIRLADRLVDAIGTAISSNVGDVLAAFTEGFRVFFTESAADPLVISLL 121 Query 123 TGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSM 182 TGVAKPDLLQ+ITTDSAPIITRASA+L +F ++WV+ ++ D+ VL+RAIVRL +SYVSM Sbjct 122 TGVAKPDLLQMITTDSAPIITRASAKLTESFMNSWVSASEADSGVLARAIVRLAMSYVSM 181 Query 183 PPEAD 187 PPEAD Sbjct 182 PPEAD 186 >gi|169630676|ref|YP_001704325.1| TetR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169242643|emb|CAM63671.1| Putative transcriptional regulator, TetR family [Mycobacterium abscessus] Length=235 Score = 265 bits (676), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 127/192 (67%), Positives = 161/192 (84%), Gaps = 0/192 (0%) Query 12 KRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLA 71 R+PYAEA+RALLR+SVLDA+ DLL RDWSA+T+SDV+R AG+SRQT+YNEFGSRQGLA Sbjct 36 HRVPYAEAARALLRESVLDALGDLLRQRDWSAVTMSDVSRRAGVSRQTLYNEFGSRQGLA 95 Query 72 QGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLL 131 QGYALRLA RLVD V ++ A+VG+ + A GF FFAESAADP+VISLLTG AKP+L+ Sbjct 96 QGYALRLAHRLVDAVGDAIYAHVGDIHGALHSGFADFFAESAADPMVISLLTGEAKPELM 155 Query 132 QLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVA 191 +++T DSA I+ ASARL +F ++WVA + DA++L+R+IVRL +SYVSMPPE+DHDVA Sbjct 156 RIVTVDSALIVVPASARLTESFMNSWVAASQEDASILARSIVRLAISYVSMPPESDHDVA 215 Query 192 ADLARLITPFAE 203 D+ARL++PF E Sbjct 216 LDMARLLSPFVE 227 >gi|226365791|ref|YP_002783574.1| TetR family transcriptional regulator [Rhodococcus opacus B4] gi|226244281|dbj|BAH54629.1| putative TetR family transcriptional regulator [Rhodococcus opacus B4] Length=206 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 123/191 (65%), Positives = 144/191 (76%), Gaps = 0/191 (0%) Query 13 RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQ 72 R+PY EA+R LLR SVLDAMRDLL +DWS IT+SDVA AG+SRQT+YNEF SRQGLA+ Sbjct 7 RVPYQEAARLLLRQSVLDAMRDLLFEKDWSDITMSDVAAGAGVSRQTLYNEFKSRQGLAE 66 Query 73 GYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQ 132 YALRLAD LVD V +L ANVG A L GF +FFA S +DPLV SLL G KPDLL+ Sbjct 67 AYALRLADELVDAVDEALVANVGQGRAALLAGFTAFFAASLSDPLVQSLLRGETKPDLLR 126 Query 133 LITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAA 192 LITT+SAPII RAS RLA F WV +DA +LSRAIVRL +SY+SMPPE++ +VA Sbjct 127 LITTESAPIIERASTRLAEVFQRGWVRANPSDAGILSRAIVRLAMSYISMPPESEANVAE 186 Query 193 DLARLITPFAE 203 DL L+ PF + Sbjct 187 DLGALLGPFVD 197 >gi|111023284|ref|YP_706256.1| TetR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110822814|gb|ABG98098.1| possible transcriptional regulator, TetR family protein [Rhodococcus jostii RHA1] Length=226 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 123/191 (65%), Positives = 144/191 (76%), Gaps = 0/191 (0%) Query 13 RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQ 72 R+PY EA+R LLR SVLDAMRDLL +DWS IT+SDVA AG+SRQT+YNEF SRQGLA+ Sbjct 27 RVPYQEAARLLLRQSVLDAMRDLLFEKDWSDITMSDVAAGAGVSRQTLYNEFKSRQGLAE 86 Query 73 GYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQ 132 YALRLAD LVD V +L ANVG A L GF +FFA S +DPLV SLL G KPDLL+ Sbjct 87 AYALRLADELVDAVDEALVANVGEGRAALLSGFTAFFAASLSDPLVQSLLRGETKPDLLR 146 Query 133 LITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAA 192 LITT+SAPII RAS RLA F WV +DA +LSRAIVRL +SY+SMPPE++ +VA Sbjct 147 LITTESAPIIERASRRLADVFQRCWVRANPSDAGILSRAIVRLAMSYISMPPESEANVAE 206 Query 193 DLARLITPFAE 203 DL L+ PF + Sbjct 207 DLGALLGPFVD 217 >gi|15420779|gb|AAK97457.1|AF388182_5 putative regulator [Rhodococcus sp. Q15] Length=218 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 121/189 (65%), Positives = 144/189 (77%), Gaps = 0/189 (0%) Query 13 RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQ 72 R+P EASR LLR SVLD+MR+LL RDWS +TL+ +A+ AG+SRQT+YNEFGSRQGLA+ Sbjct 7 RLPQKEASRLLLRTSVLDSMRELLTERDWSEVTLTVLAKHAGVSRQTLYNEFGSRQGLAE 66 Query 73 GYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQ 132 YALRLADR VD V ++ AN G EA GF SFFA SA DPLVISLLTG AKPDLL+ Sbjct 67 AYALRLADRFVDAVDEAMVANDGRAVEALTAGFGSFFASSATDPLVISLLTGEAKPDLLR 126 Query 133 LITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAA 192 LITTDSA II RAS+RLA +F W+ + DA +L+RAI RL LSY+SMPPE++ VA Sbjct 127 LITTDSAVIIERASSRLAESFQRGWIQASPADAGILARAIARLGLSYISMPPESEASVAE 186 Query 193 DLARLITPF 201 DL L+ PF Sbjct 187 DLGILLGPF 195 >gi|317506297|ref|ZP_07964111.1| tetR family bacterial regulatory protein [Segniliparus rugosus ATCC BAA-974] gi|316255391|gb|EFV14647.1| tetR family bacterial regulatory protein [Segniliparus rugosus ATCC BAA-974] Length=215 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 114/192 (60%), Positives = 147/192 (77%), Gaps = 0/192 (0%) Query 13 RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQ 72 R PYAEASR LLR+SVLDA++ LL DWS +T++DVA+AAG+SRQT+YNEF SR GL + Sbjct 12 RSPYAEASRMLLRESVLDALQQLLEHEDWSEVTMADVAKAAGVSRQTLYNEFQSRTGLVE 71 Query 73 GYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQ 132 YALRLADRL D V ++ AN+G+ ++A +QGF+ FF + A+DPLV+S L G AKPDL++ Sbjct 72 AYALRLADRLADAVDDAIQANIGDIHQALIQGFQMFFVQIASDPLVVSFLAGEAKPDLMR 131 Query 133 LITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAA 192 L+TTDS PII RASARL + +WVA +DA + +RA+VRL LSYVS PPE HDV Sbjct 132 LLTTDSGPIIERASARLTDSLAASWVAPRLSDAGIFARALVRLALSYVSAPPETGHDVPE 191 Query 193 DLARLITPFAER 204 +LA L+ PF E+ Sbjct 192 ELALLLQPFIEK 203 >gi|296393191|ref|YP_003658075.1| TetR family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180338|gb|ADG97244.1| transcriptional regulator, TetR family [Segniliparus rotundus DSM 44985] Length=216 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 113/203 (56%), Positives = 151/203 (75%), Gaps = 0/203 (0%) Query 1 VSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 ++ PS R PYAEA+R LLR+SVLDA++ LL +DWS +T+++VA+AAG+SRQT+ Sbjct 1 MTRPSNISKAKTRSPYAEAARMLLRESVLDALQQLLAHQDWSEVTMTEVAKAAGVSRQTL 60 Query 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVIS 120 YNEF SR GL + YALRLADRL D V ++ NVG+ +++ +QGF+ FF++ A DPLV+S Sbjct 61 YNEFQSRTGLVEAYALRLADRLADAVDDAVKRNVGDIHQSLVQGFQGFFSQIAGDPLVLS 120 Query 121 LLTGVAKPDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYV 180 L+G AKPDL++L+TTDS PII RASARL F +W+A NDA + +RA+VRL LSYV Sbjct 121 FLSGEAKPDLMRLLTTDSGPIIERASARLTDLFCVSWIAPHPNDAGIFARALVRLSLSYV 180 Query 181 SMPPEADHDVAADLARLITPFAE 203 S PPE HDV +LA L+ PF + Sbjct 181 STPPEVGHDVPEELALLMQPFIQ 203 >gi|226305652|ref|YP_002765612.1| TetR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226184769|dbj|BAH32873.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis PR4] Length=213 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 120/189 (64%), Positives = 143/189 (76%), Gaps = 0/189 (0%) Query 13 RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQ 72 R+P EASR LLR SVLD+MR+LL RDWS +TL+ +A+ AG+SRQT+YNEFGSRQGLA+ Sbjct 7 RLPQKEASRLLLRTSVLDSMRELLTERDWSEVTLTVLAKHAGVSRQTLYNEFGSRQGLAE 66 Query 73 GYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQ 132 YALRLAD VD V ++ AN G EA GF SFFA SA DPLVISLLTG AKPDLL+ Sbjct 67 AYALRLADGFVDAVDEAMVANDGRAVEALTAGFGSFFASSATDPLVISLLTGEAKPDLLR 126 Query 133 LITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAA 192 LITTDSA II RAS+RLA +F W+ + DA +L+RAI RL LSY+SMPPE++ VA Sbjct 127 LITTDSAVIIERASSRLAESFQRGWIQASPTDAGILARAIARLGLSYISMPPESEVSVAE 186 Query 193 DLARLITPF 201 DL L+ PF Sbjct 187 DLGTLLGPF 195 >gi|229489669|ref|ZP_04383532.1| transcriptional regulator, TetR family protein [Rhodococcus erythropolis SK121] gi|229323766|gb|EEN89524.1| transcriptional regulator, TetR family protein [Rhodococcus erythropolis SK121] Length=213 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 120/189 (64%), Positives = 143/189 (76%), Gaps = 0/189 (0%) Query 13 RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQ 72 R+P EASR LLR SVLD+MR+LL RDWS +TL+ +A+ AG+SRQT+YNEFGSRQGLA+ Sbjct 7 RLPQKEASRLLLRTSVLDSMRELLTERDWSEVTLTVLAKHAGVSRQTLYNEFGSRQGLAE 66 Query 73 GYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQ 132 YALRLAD VD V ++ AN G EA GF SFFA SA DPLVISLLTG AKPDLL+ Sbjct 67 AYALRLADGFVDAVDEAMVANDGRAVEALTAGFGSFFASSATDPLVISLLTGEAKPDLLR 126 Query 133 LITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAA 192 LITTDSA II RAS+RLA +F W+ + DA +L+RAI RL LSY+SMPPE++ VA Sbjct 127 LITTDSAVIIERASSRLAESFQRGWIQASPADAGILARAIARLGLSYISMPPESEASVAE 186 Query 193 DLARLITPF 201 DL L+ PF Sbjct 187 DLGILLGPF 195 >gi|238734618|gb|ACR55692.1| putative regulatory protein [Geobacillus sp. MH-1] Length=213 Score = 234 bits (596), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 119/189 (63%), Positives = 142/189 (76%), Gaps = 0/189 (0%) Query 13 RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQ 72 R+P EASR LLR SVLD+MR+L RDWS +TL+ +A+ AG+SRQT+YNEFGSRQGLA+ Sbjct 7 RLPQKEASRLLLRTSVLDSMRELSTERDWSEVTLTVLAKHAGVSRQTLYNEFGSRQGLAE 66 Query 73 GYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQ 132 YALRLAD VD V ++ AN G EA GF SFFA SA DPLVISLLTG AKPDLL+ Sbjct 67 AYALRLADGFVDAVDEAMVANDGRAVEALTAGFGSFFASSATDPLVISLLTGEAKPDLLR 126 Query 133 LITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAA 192 LITTDSA II RAS+RLA +F W+ + DA +L+RAI RL LSY+SMPPE++ VA Sbjct 127 LITTDSAVIIERASSRLAESFQRGWIQASPADAGILARAIARLGLSYISMPPESEASVAE 186 Query 193 DLARLITPF 201 DL L+ PF Sbjct 187 DLGTLLGPF 195 >gi|226349676|ref|YP_002776790.1| putative TetR family transcriptional regulator [Rhodococcus opacus B4] gi|226245591|dbj|BAH55938.1| putative TetR family transcriptional regulator [Rhodococcus opacus B4] Length=207 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 111/189 (59%), Positives = 143/189 (76%), Gaps = 0/189 (0%) Query 13 RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQ 72 RIPYAEA+R+LL S+LDAM DLL T+DWS IT++ VA +AG+SRQT+YNEF SR GLAQ Sbjct 10 RIPYAEATRSLLHQSILDAMGDLLRTKDWSEITMTHVAASAGVSRQTLYNEFQSRHGLAQ 69 Query 73 GYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQ 132 GYALRL D V+ + ++ N G+ + A L GF FFAES +DPLV SLLTG KPDLL+ Sbjct 70 GYALRLTDSFVEALDEAVYTNTGDMHGALLGGFSRFFAESGSDPLVQSLLTGDPKPDLLR 129 Query 133 LITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAA 192 LIT +SAP+I RAS RL+ F +WV + A VL++AI RL +SY+SMPP++ DVA Sbjct 130 LITVESAPLIERASGRLSTTFGHSWVQASTERAMVLAKAIARLAISYISMPPDSYGDVAE 189 Query 193 DLARLITPF 201 D+A+L+TP+ Sbjct 190 DMAKLLTPY 198 >gi|325675691|ref|ZP_08155375.1| transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325553662|gb|EGD23340.1| transcriptional regulator [Rhodococcus equi ATCC 33707] Length=202 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/194 (58%), Positives = 141/194 (73%), Gaps = 0/194 (0%) Query 10 PVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQG 69 P R+PY EASR LLR+S+LDA+ D LL RDWS +T++DVA A G+SRQT+YNEFGSRQG Sbjct 4 PQPRVPYQEASRLLLRESILDAVHDFLLERDWSGVTMTDVAAAVGVSRQTLYNEFGSRQG 63 Query 70 LAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPD 129 LA GYALRL DR VD V ++ + G+ A + GF FF S ADPLV SL TG AKPD Sbjct 64 LANGYALRLVDRFVDAVTDAVYRHEGDARAALVDGFTGFFQASGADPLVRSLRTGAAKPD 123 Query 130 LLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHD 189 LL+++TTDSAP+I RA+ RLA F +W+ ++ D+ VL IVR+ LSYVSMPP +D D Sbjct 124 LLRIVTTDSAPLIERATGRLAETFRLSWIQASEGDSTVLGHGIVRIALSYVSMPPTSDRD 183 Query 190 VAADLARLITPFAE 203 A +LA L+ PF + Sbjct 184 DAQELAALLAPFVD 197 >gi|298526725|ref|ZP_07014134.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|298496519|gb|EFI31813.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] Length=116 Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 113/114 (99%), Positives = 114/114 (100%), Gaps = 0/114 (0%) Query 1 VSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 +STPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI Sbjct 1 MSTPSATVAPVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTI 60 Query 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAA 114 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAA Sbjct 61 YNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAA 114 >gi|312140679|ref|YP_004008015.1| tetr family transcriptional regulator [Rhodococcus equi 103S] gi|311890018|emb|CBH49336.1| putative TetR family transcriptional regulator [Rhodococcus equi 103S] Length=195 Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 110/190 (58%), Positives = 139/190 (74%), Gaps = 0/190 (0%) Query 14 IPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQG 73 +PY EASR LLR+S+LDA+ D LL RDWS +T++DVA A G+SRQT+YNEFGSRQGLA G Sbjct 1 MPYQEASRLLLRESILDAVHDFLLERDWSGVTMTDVAAAVGVSRQTLYNEFGSRQGLANG 60 Query 74 YALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQL 133 YALRL DR VD V ++ + G+ A + GF FF S ADPLV SL TG AKPDLL++ Sbjct 61 YALRLVDRFVDAVTDAVYRHEGDARAALVDGFTGFFQASGADPLVRSLRTGAAKPDLLRI 120 Query 134 ITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAAD 193 +TTDSAP+I RA+ RLA F +W+ ++ D+ VL IVR+ LSYVSMPP +D D A + Sbjct 121 VTTDSAPLIERATGRLAETFRLSWIQASEGDSTVLGHGIVRIALSYVSMPPTSDRDDAQE 180 Query 194 LARLITPFAE 203 LA L+ PF + Sbjct 181 LAALLAPFVD 190 >gi|54026588|ref|YP_120830.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54018096|dbj|BAD59466.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=211 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 111/195 (57%), Positives = 140/195 (72%), Gaps = 0/195 (0%) Query 9 APVKRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQ 68 AP R+PY EA+R LLR S+LDAMR LL RDW+ ITL+DVA AG+SRQT+YNEFGSR Sbjct 8 APEPRMPYQEAARELLRASILDAMRGLLTERDWAKITLADVAGRAGVSRQTLYNEFGSRA 67 Query 69 GLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKP 128 GLAQ YALRLAD LVD+V A++ NVG+ AF +G FF +SAADPLV SLL G AKP Sbjct 68 GLAQAYALRLADDLVDHVRAAVTGNVGDARAAFREGLSGFFLDSAADPLVRSLLAGEAKP 127 Query 129 DLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADH 188 DLL+LIT D+ P++ A+ RLA F +WVA T + V++ A+VR+ LSY+ PP Sbjct 128 DLLRLITLDAGPLVEHATDRLAAVFEHSWVAATAAQSQVVAHALVRIALSYIPNPPGPGR 187 Query 189 DVAADLARLITPFAE 203 + A+LA L+ P+ E Sbjct 188 NAPAELAELLAPYVE 202 >gi|343924858|ref|ZP_08764396.1| putative TetR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343765235|dbj|GAA11322.1| putative TetR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=200 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 100/175 (58%), Positives = 124/175 (71%), Gaps = 1/175 (0%) Query 30 DAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHAS 89 D + DLL RDWSAI +SDVA A G+SRQT+YNEFGSR GLAQGYA+RLA+R +V S Sbjct 20 DGLHDLLTERDWSAIRMSDVAAATGVSRQTVYNEFGSRNGLAQGYAVRLANRFAGHVAES 79 Query 90 LDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARL 149 L +VG+ A F +F A DPL+ SLL+G AKPDL++LITTD APII AS RL Sbjct 80 LADHVGDVTGALRTAFTEYFTGVATDPLIASLLSGEAKPDLMKLITTDVAPIIATASERL 139 Query 150 APAFTD-TWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAE 203 + AF + TW+ D+D +SRAI R+ LS+V+MPPE + DVAADLA +I P E Sbjct 140 SQAFRESTWLTMPDSDIERISRAITRMALSFVAMPPEGNRDVAADLAEIIAPAIE 194 >gi|13750761|emb|CAC37041.1| unnamed protein product [Rhodococcus erythropolis] Length=161 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 99/155 (64%), Positives = 117/155 (76%), Gaps = 0/155 (0%) Query 13 RIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQ 72 R+P EASR LLR SVLD+MR+LL RDWS +TL+ +A+ AG+SRQT+YNEFGSRQGLA+ Sbjct 7 RLPQKEASRLLLRTSVLDSMRELLTERDWSEVTLTVLAKHAGVSRQTLYNEFGSRQGLAE 66 Query 73 GYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQ 132 YALRLAD VD V ++ AN G EA GF SFFA SA DPLVISLLTG AKPDLL+ Sbjct 67 AYALRLADGFVDAVDEAMVANDGRAVEALTAGFGSFFASSATDPLVISLLTGEAKPDLLR 126 Query 133 LITTDSAPIITRASARLAPAFTDTWVATTDNDANV 167 LITTDSA II RAS+RLA +F W+ + DA + Sbjct 127 LITTDSAVIIERASSRLAESFQRGWIQASPTDAGI 161 >gi|315143110|gb|ADT82705.1| putative TetR family transcriptional regulator [Gordonia sp. SoCg] Length=188 Score = 187 bits (476), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 95/175 (55%), Positives = 120/175 (69%), Gaps = 2/175 (1%) Query 37 LTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVDNVHASLDANVGN 96 + RDWS++ +SDVA A G+SRQT+YNEFGSR GLAQGYA+RLA R +V SL +V + Sbjct 1 MDRDWSSVRMSDVAAATGVSRQTVYNEFGSRYGLAQGYAVRLASRFAGHVADSLAEHVDD 60 Query 97 FYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITRASARLAPAF--T 154 A F +F A DPL+ SLL+G AKPDL++LITT+ PII+ P Sbjct 61 VTGALRTAFTEYFTGVATDPLIASLLSGEAKPDLMKLITTECGPIISHGRRPALPGVPRV 120 Query 155 DTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPFAERHGVIN 209 D V +D+D ++RAI R+ LSYV+MPPE D DVAADLARL+TPFAER+GVI Sbjct 121 DVVVDASDSDIERIARAITRMALSYVAMPPEGDRDVAADLARLMTPFAERYGVIE 175 >gi|226361675|ref|YP_002779453.1| TetR family transcriptional regulator [Rhodococcus opacus B4] gi|226240160|dbj|BAH50508.1| putative TetR family transcriptional regulator [Rhodococcus opacus B4] Length=204 Score = 181 bits (460), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 97/186 (53%), Positives = 128/186 (69%), Gaps = 0/186 (0%) Query 16 YAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYA 75 Y A+ +L+R++ LDA+R+LLL R W IT++DVA AAG+SRQTIY EF SR+GLA+GYA Sbjct 13 YRLAATSLMRETTLDALRELLLERPWPTITMTDVAVAAGMSRQTIYKEFRSRRGLAEGYA 72 Query 76 LRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLIT 135 LRL D LV + ++L N G+ A QG+ +FF S ADPLV+SL G A DLL+LIT Sbjct 73 LRLTDSLVTVIESALYDNPGDVTTALRQGYATFFELSGADPLVLSLHQGQAPEDLLRLIT 132 Query 136 TDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLA 195 TDS II A+ RLA +WV + DA++L+ AIVRL LS+++ PPE +A+ A Sbjct 133 TDSDIIIRPAAERLAETLQRSWVNASPEDADILAHAIVRLALSFIANPPEDTATASANTA 192 Query 196 RLITPF 201 RL PF Sbjct 193 RLFAPF 198 >gi|111019529|ref|YP_702501.1| TetR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110819059|gb|ABG94343.1| possible transcriptional regulator, TetR family protein [Rhodococcus jostii RHA1] Length=208 Score = 180 bits (457), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 95/186 (52%), Positives = 130/186 (70%), Gaps = 0/186 (0%) Query 16 YAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYA 75 Y A+ +L+R++ LDA+R+LLL R W IT++DVA AAG+SRQTIY EF SR+GLA+GYA Sbjct 13 YRLAATSLMRETTLDALRELLLERPWPTITMTDVAVAAGLSRQTIYKEFRSRRGLAEGYA 72 Query 76 LRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLIT 135 LRL D LV + ++L N G+ A +G+ +FF S ADPLV+SL G A DLL+LIT Sbjct 73 LRLTDSLVTVIESALYENPGDATTALREGYATFFELSGADPLVMSLHQGKAPEDLLRLIT 132 Query 136 TDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLA 195 TDS II A+ RLA +WV ++ +DA++++ AIVRL LS+++ PPE +A+ A Sbjct 133 TDSNIIIRPAAERLAQTLQRSWVNSSPDDADIIAHAIVRLALSFIANPPEDTAAASANTA 192 Query 196 RLITPF 201 RL PF Sbjct 193 RLFAPF 198 >gi|319948106|ref|ZP_08022270.1| putative transcriptional regulator [Dietzia cinnamea P4] gi|319438217|gb|EFV93173.1| putative transcriptional regulator [Dietzia cinnamea P4] Length=214 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 81/195 (42%), Positives = 127/195 (66%), Gaps = 0/195 (0%) Query 17 AEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYAL 76 A R LR +V +AM +LL +RDWSA+T+SDVA+AAG+SRQT+Y+ FG+RQGLAQ YAL Sbjct 19 ARGERRPLRSTVFEAMHELLGSRDWSAVTMSDVAKAAGLSRQTLYSAFGNRQGLAQAYAL 78 Query 77 RLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITT 136 +L++ + S+ G A +G F S DPL+ +LLTG KP+LL+LITT Sbjct 79 QLSETFAGEIRDSIIRYPGQIETALREGINGFLLSSQRDPLIRALLTGDIKPELLRLITT 138 Query 137 DSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLAR 196 ++ P+I RA+ L PA ++W+ ++ A + + I R+ +S++S+PPE +A+ L Sbjct 139 EAGPLIERATEVLTPALAESWMRIEESQARLAASIIARIGISFISLPPEDPDQLASGLTE 198 Query 197 LITPFAERHGVINVP 211 +I P+ ++ +++P Sbjct 199 VIAPYLQKVVQVDLP 213 >gi|224797150|gb|ACN62570.1| TetR family transcriptional regulator [Dietzia sp. E1] Length=214 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 80/195 (42%), Positives = 127/195 (66%), Gaps = 0/195 (0%) Query 17 AEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYAL 76 A R LR +V +AM +LL +RDWSA+T+SDVA+AAG+SRQT+Y+ FG+R+GLAQ YAL Sbjct 19 ARGERRPLRSTVFEAMHELLGSRDWSAVTMSDVAKAAGLSRQTLYSTFGNREGLAQAYAL 78 Query 77 RLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITT 136 +L++ + S+ G A +G F S DPL+ +LLTG KP+LL+LITT Sbjct 79 QLSETFAGEIRDSIIRYPGQIETALREGINGFLLSSQRDPLIRALLTGDIKPELLRLITT 138 Query 137 DSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLAR 196 ++ P+I RA+ L PA ++W+ ++ A + + I R+ +S++S+PPE +A+ L Sbjct 139 EAGPLIERATEVLTPALAESWMRIEESQARLAASIIARIGISFISLPPEDPDQLASGLTE 198 Query 197 LITPFAERHGVINVP 211 +I P+ ++ +++P Sbjct 199 VIAPYLQKVVQVDLP 213 >gi|240171856|ref|ZP_04750515.1| TetR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length=204 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/195 (45%), Positives = 124/195 (64%), Gaps = 0/195 (0%) Query 12 KRIPYAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLA 71 R PY + +L+ + VLDA+ LLL R WS+IT++DVA AAG+SR TIYNEF SR+GLA Sbjct 9 NRNPYQSTALSLMHNGVLDALHGLLLQRKWSSITMADVASAAGVSRGTIYNEFQSRRGLA 68 Query 72 QGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLL 131 + YALRL D +V + ++D + G+ Y A FR FF DPLV L T A D+L Sbjct 69 RSYALRLTDTIVTGMRTAIDEHHGDGYGAMRTVFRDFFDRVDHDPLVQVLRTEDAPNDIL 128 Query 132 QLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVA 191 +LIT +S ++ AS++L+ F +WV + DA V+ +A+VR LS++++PP + A Sbjct 129 RLITVESQFLVDHASSQLSQTFQHSWVNADEYDATVMGQAVVRAALSFLALPPADADEAA 188 Query 192 ADLARLITPFAERHG 206 +ARL+ PF E G Sbjct 189 RGMARLLAPFVESIG 203 >gi|326383566|ref|ZP_08205252.1| putative transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326197650|gb|EGD54838.1| putative transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length=204 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 95/177 (54%), Positives = 127/177 (72%), Gaps = 1/177 (0%) Query 9 APVKRIP-YAEASRALLRDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSR 67 AP + P +AEAS+ LLR ++LD +R LL +DW+ +T++DVA+ AG+SRQT+YNEF SR Sbjct 3 APAQSTPSFAEASKQLLRTTLLDGLRTLLREKDWARVTMADVAKQAGVSRQTVYNEFASR 62 Query 68 QGLAQGYALRLADRLVDNVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAK 127 GL+Q YALRLAD + ++DANV + A GF +FFA +A DPL+ SLL+G AK Sbjct 63 AGLSQAYALRLADEFTTEIGIAIDANVDDVTGALRSGFAAFFASAADDPLIQSLLSGEAK 122 Query 128 PDLLQLITTDSAPIITRASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPP 184 PDLL+LITTD+APII+ ASARL ++WVA A ++R I R+ LSYV+MPP Sbjct 123 PDLLKLITTDAAPIISAASARLEVILVESWVAVDQATAGRIARMITRMALSYVAMPP 179 >gi|343916447|gb|AEM66515.1| TetR transcriptional regulatory protein [Dietzia sp. DQ12-45-1b] Length=214 Score = 161 bits (408), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 77/177 (44%), Positives = 119/177 (68%), Gaps = 0/177 (0%) Query 25 RDSVLDAMRDLLLTRDWSAITLSDVARAAGISRQTIYNEFGSRQGLAQGYALRLADRLVD 84 R +V DAM LL +RDWSA+T+SDVA+AAG+SRQT+Y+ FG+RQGLAQ YAL+L+++ Sbjct 27 RFTVFDAMHQLLESRDWSAVTMSDVAKAAGLSRQTLYSTFGNRQGLAQAYALQLSEKFAG 86 Query 85 NVHASLDANVGNFYEAFLQGFRSFFAESAADPLVISLLTGVAKPDLLQLITTDSAPIITR 144 + S+ + G A +G F S+ DPL+ +L+TG KPDLL+LIT ++ P+I R Sbjct 87 EIRDSIIRHPGQIELALSEGINGFLRSSSRDPLIRALVTGDIKPDLLRLITPEAGPLIER 146 Query 145 ASARLAPAFTDTWVATTDNDANVLSRAIVRLCLSYVSMPPEADHDVAADLARLITPF 201 A+ L PA +++W+ + A + + I R+ +S++S+PPE +A+ L +I P+ Sbjct 147 ATEVLMPALSESWMRIEASQARLAASIIARIGISFISLPPEDPDQLASGLTEVIAPY 203 Lambda K H 0.321 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 249157747332 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40