BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3250c

Length=60
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|258588191|pdb|2KN9|A  Chain A, Solution Structure Of Zinc-Subs...   127    5e-28
gi|15610386|ref|NP_217767.1|  rubredoxin RubB [Mycobacterium tube...   124    5e-27
gi|254233861|ref|ZP_04927186.1|  rubredoxin rubB [Mycobacterium t...   121    3e-26
gi|333992640|ref|YP_004525254.1|  rubredoxin [Mycobacterium sp. J...   115    3e-24
gi|313665977|gb|ADR72656.1|  RubB [Rhodococcus sp. BCP1]               113    1e-23
gi|296168955|ref|ZP_06850624.1|  rubredoxin/rubredoxin reductase ...   113    1e-23
gi|118618195|ref|YP_906527.1|  rubredoxin RubB_1 [Mycobacterium u...   112    1e-23
gi|226349674|ref|YP_002776788.1|  rubredoxin [Rhodococcus opacus ...   112    2e-23
gi|326383568|ref|ZP_08205254.1|  Rubredoxin-type Fe(Cys)4 protein...   112    2e-23
gi|118464460|ref|YP_883355.1|  rubredoxin [Mycobacterium avium 10...   112    3e-23
gi|119867402|ref|YP_937354.1|  rubredoxin-type Fe(Cys)4 protein [...   111    3e-23
gi|145225297|ref|YP_001135975.1|  rubredoxin-type Fe(Cys)4 protei...   111    4e-23
gi|240172607|ref|ZP_04751266.1|  rubredoxin RubB [Mycobacterium k...   111    4e-23
gi|120402744|ref|YP_952573.1|  rubredoxin-type Fe(Cys)4 protein [...   110    5e-23
gi|118618065|ref|YP_906397.1|  rubredoxin RubB [Mycobacterium ulc...   110    5e-23
gi|336459674|gb|EGO38609.1|  rubredoxin [Mycobacterium avium subs...   110    5e-23
gi|270268857|gb|ACZ65963.1|  putative rubredoxin [Mycobacterium c...   110    7e-23
gi|260066435|gb|ACX30749.1|  RubA2 [Rhodococcus ruber]                 110    9e-23
gi|115511390|dbj|BAF34301.1|  rubredoxin [Mycobacterium sp. TY-6]      109    2e-22
gi|254822997|ref|ZP_05227998.1|  rubredoxin-type Fe(Cys)4 protein...   109    2e-22
gi|296393192|ref|YP_003658076.1|  rubredoxin-type Fe(Cys)4 protei...   108    2e-22
gi|342861453|ref|ZP_08718100.1|  rubredoxin [Mycobacterium colomb...   108    4e-22
gi|333921454|ref|YP_004495035.1|  Rubredoxin [Amycolicicoccus sub...   107    4e-22
gi|226361673|ref|YP_002779451.1|  rubredoxin [Rhodococcus opacus ...   107    6e-22
gi|54026589|ref|YP_120831.1|  putative rubredoxin [Nocardia farci...   107    6e-22
gi|296140442|ref|YP_003647685.1|  Rubredoxin-type Fe(Cys)4 protei...   107    7e-22
gi|226305651|ref|YP_002765611.1|  rubredoxin [Rhodococcus erythro...   107    7e-22
gi|118473312|ref|YP_886211.1|  rubredoxin [Mycobacterium smegmati...   105    2e-21
gi|15420771|gb|AAK97450.1|AF388181_3  rubredoxin 2 [Rhodococcus s...   105    2e-21
gi|238734617|gb|ACR55691.1|  rubredoxin 4 [Geobacillus sp. MH-1]       105    2e-21
gi|229494527|ref|ZP_04388290.1|  conserved hypothetical protein [...   105    3e-21
gi|169630677|ref|YP_001704326.1|  rubredoxin RubB [Mycobacterium ...   105    3e-21
gi|111019527|ref|YP_702499.1|  alkene monooxygenase rubredoxin [R...   105    3e-21
gi|226304237|ref|YP_002764195.1|  rubredoxin [Rhodococcus erythro...   105    3e-21
gi|315143108|gb|ADT82703.1|  rubredoxin 4 [Gordonia sp. SoCg]          104    4e-21
gi|54649962|dbj|BAD67022.1|  rubredoxin 4 [Gordonia sp. TF6]           102    2e-20
gi|312140680|ref|YP_004008016.1|  rubredoxin rubb [Rhodococcus eq...   101    3e-20
gi|289751944|ref|ZP_06511322.1|  rubredoxin rubB [Mycobacterium t...  97.4    6e-19
gi|262373051|ref|ZP_06066330.1|  rubredoxin [Acinetobacter junii ...  88.6    3e-16
gi|270156666|ref|ZP_06185323.1|  rubredoxin [Legionella longbeach...  88.2    3e-16
gi|26992047|ref|NP_747472.1|  rubredoxin/rubredoxin reductase [Ps...  88.2    3e-16
gi|126641045|ref|YP_001084029.1|  rubredoxin [Acinetobacter bauma...  88.2    4e-16
gi|262368779|ref|ZP_06062108.1|  rubredoxin [Acinetobacter johnso...  87.4    6e-16
gi|29655166|ref|NP_820858.1|  rubredoxin [Coxiella burnetii RSA 4...  87.4    7e-16
gi|255319142|ref|ZP_05360360.1|  rubredoxin [Acinetobacter radior...  87.0    7e-16
gi|269124824|ref|YP_003298194.1|  Rubredoxin-type Fe(Cys)4 protei...  87.0    7e-16
gi|339328354|ref|YP_004688046.1|  hypothetical protein CNE_BB1p05...  87.0    8e-16
gi|254514245|ref|ZP_05126306.1|  rubredoxin reductase [gamma prot...  87.0    9e-16
gi|262375836|ref|ZP_06069068.1|  rubredoxin [Acinetobacter lwoffi...  86.3    1e-15
gi|262278303|ref|ZP_06056088.1|  rubredoxin-NAD(+) reductase [Aci...  86.3    1e-15


>gi|258588191|pdb|2KN9|A Chain A, Solution Structure Of Zinc-Substituted Rubredoxin B 
(Rv3250c) From Mycobacterium Tuberculosis. Seattle Structural 
Genomics Center For Infectious Disease Target Mytud.01635.A
Length=81

 Score =  127 bits (319),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 59/60 (99%), Positives = 60/60 (100%), Gaps = 0/60 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           +NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS
Sbjct  22  MNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  81


>gi|15610386|ref|NP_217767.1| rubredoxin RubB [Mycobacterium tuberculosis H37Rv]
 gi|15842839|ref|NP_337876.1| rubredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31794430|ref|NP_856923.1| rubredoxin RubB [Mycobacterium bovis AF2122/97]
 74 more sequence titles
 Length=60

 Score =  124 bits (311),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 59/60 (99%), Positives = 60/60 (100%), Gaps = 0/60 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           +NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS
Sbjct  1   MNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60


>gi|254233861|ref|ZP_04927186.1| rubredoxin rubB [Mycobacterium tuberculosis C]
 gi|124599390|gb|EAY58494.1| rubredoxin rubB [Mycobacterium tuberculosis C]
Length=60

 Score =  121 bits (304),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 58/60 (97%), Positives = 59/60 (99%), Gaps = 0/60 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           +NDYKLFRCIQCGFEYDEALGWPED IAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS
Sbjct  1   MNDYKLFRCIQCGFEYDEALGWPEDDIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60


>gi|333992640|ref|YP_004525254.1| rubredoxin [Mycobacterium sp. JDM601]
 gi|333488608|gb|AEF38000.1| rubredoxin RubB [Mycobacterium sp. JDM601]
Length=60

 Score =  115 bits (287),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 53/60 (89%), Positives = 57/60 (95%), Gaps = 0/60 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           +NDYKLFRC+QCGFEYDEALGWPEDGI  GTRW DIP+DWSCPDCGAAK+DFEMVEVARS
Sbjct  1   MNDYKLFRCLQCGFEYDEALGWPEDGIEPGTRWADIPEDWSCPDCGAAKADFEMVEVARS  60


>gi|313665977|gb|ADR72656.1| RubB [Rhodococcus sp. BCP1]
Length=61

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 56/60 (94%), Gaps = 0/60 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
             +YKLFRC+QCGFEYDEA GWPEDGIA GTRWD+IPDDWSCPDCGAAKSDFEMVEV+R+
Sbjct  2   TTNYKLFRCLQCGFEYDEAEGWPEDGIAPGTRWDEIPDDWSCPDCGAAKSDFEMVEVSRT  61


>gi|296168955|ref|ZP_06850624.1| rubredoxin/rubredoxin reductase [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896424|gb|EFG76077.1| rubredoxin/rubredoxin reductase [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=60

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 52/60 (87%), Positives = 57/60 (95%), Gaps = 0/60 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           ++DYKLF C+QCGFEYDEA GWPEDGIA GTRWDDIP+DWSCPDCGAAKSDFEMVE+ARS
Sbjct  1   MSDYKLFVCVQCGFEYDEAKGWPEDGIAPGTRWDDIPEDWSCPDCGAAKSDFEMVEIARS  60


>gi|118618195|ref|YP_906527.1| rubredoxin RubB_1 [Mycobacterium ulcerans Agy99]
 gi|183983501|ref|YP_001851792.1| rubredoxin RubB_1 [Mycobacterium marinum M]
 gi|118570305|gb|ABL05056.1| rubredoxin RubB_1 [Mycobacterium ulcerans Agy99]
 gi|183176827|gb|ACC41937.1| rubredoxin RubB_1 [Mycobacterium marinum M]
Length=61

 Score =  112 bits (281),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 50/59 (85%), Positives = 56/59 (95%), Gaps = 0/59 (0%)

Query  2   NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
            D+KL+RC+QCGFEYDEA GWPEDGIA GTRWDDIPDDWSCPDCGAAKSDFEM+EV+R+
Sbjct  3   TDFKLYRCVQCGFEYDEAQGWPEDGIAPGTRWDDIPDDWSCPDCGAAKSDFEMIEVSRT  61


>gi|226349674|ref|YP_002776788.1| rubredoxin [Rhodococcus opacus B4]
 gi|226245589|dbj|BAH55936.1| rubredoxin [Rhodococcus opacus B4]
Length=61

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 51/59 (87%), Positives = 57/59 (97%), Gaps = 0/59 (0%)

Query  2   NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           +D+KL+RCIQCGFEYDEA GWPEDGIA GTRWDDIP+DWSCPDCGAAK+DFEM+EVARS
Sbjct  3   SDFKLYRCIQCGFEYDEAEGWPEDGIAQGTRWDDIPEDWSCPDCGAAKADFEMIEVARS  61


>gi|326383568|ref|ZP_08205254.1| Rubredoxin-type Fe(Cys)4 protein [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326197652|gb|EGD54840.1| Rubredoxin-type Fe(Cys)4 protein [Gordonia neofelifaecis NRRL 
B-59395]
Length=62

 Score =  112 bits (280),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/58 (90%), Positives = 55/58 (95%), Gaps = 0/58 (0%)

Query  3   DYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           DY+LFRC+QCGFEYDEA GWPEDGI  GTRWDDIPDDWSCPDCGAAK+DFEMVEVARS
Sbjct  5   DYRLFRCMQCGFEYDEAEGWPEDGIEPGTRWDDIPDDWSCPDCGAAKADFEMVEVARS  62


>gi|118464460|ref|YP_883355.1| rubredoxin [Mycobacterium avium 104]
 gi|254776649|ref|ZP_05218165.1| rubredoxin [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118165747|gb|ABK66644.1| rubredoxin [Mycobacterium avium 104]
Length=60

 Score =  112 bits (279),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 52/59 (89%), Positives = 56/59 (95%), Gaps = 0/59 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           ++DYKLF C+QCGFEYDEA GWPEDGIA GTRWDDIP+DWSCPDCGAAKSDFEMVEVAR
Sbjct  1   MSDYKLFVCVQCGFEYDEAKGWPEDGIAPGTRWDDIPEDWSCPDCGAAKSDFEMVEVAR  59


>gi|119867402|ref|YP_937354.1| rubredoxin-type Fe(Cys)4 protein [Mycobacterium sp. KMS]
 gi|119693491|gb|ABL90564.1| Rubredoxin-type Fe(Cys)4 protein [Mycobacterium sp. KMS]
Length=59

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 53/58 (92%), Positives = 54/58 (94%), Gaps = 0/58 (0%)

Query  3   DYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           DYKLF C+QCGFEYDEA GWPEDGIA GTRWDDIPDDWSCPDCGAAKSDFEMVEVAR 
Sbjct  2   DYKLFVCVQCGFEYDEAKGWPEDGIAPGTRWDDIPDDWSCPDCGAAKSDFEMVEVARG  59


>gi|145225297|ref|YP_001135975.1| rubredoxin-type Fe(Cys)4 protein [Mycobacterium gilvum PYR-GCK]
 gi|315445594|ref|YP_004078473.1| rubredoxin [Mycobacterium sp. Spyr1]
 gi|145217783|gb|ABP47187.1| Rubredoxin-type Fe(Cys)4 protein [Mycobacterium gilvum PYR-GCK]
 gi|315263897|gb|ADU00639.1| rubredoxin [Mycobacterium sp. Spyr1]
Length=60

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 51/59 (87%), Positives = 56/59 (95%), Gaps = 0/59 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           ++DYKLF C+QCGFEYDEA GWPEDGIA GTRWDDIP+DWSCPDCGAAK+DFEMVEVAR
Sbjct  1   MSDYKLFVCVQCGFEYDEAKGWPEDGIAPGTRWDDIPEDWSCPDCGAAKTDFEMVEVAR  59


>gi|240172607|ref|ZP_04751266.1| rubredoxin RubB [Mycobacterium kansasii ATCC 12478]
Length=60

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 50/60 (84%), Positives = 58/60 (97%), Gaps = 0/60 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           ++DYKLF+C+QCGFEYDEALGWP++GIA GTRW+DIP+DWSCPDCGAAKSDF MVEVARS
Sbjct  1   MSDYKLFQCVQCGFEYDEALGWPDEGIAPGTRWEDIPEDWSCPDCGAAKSDFVMVEVARS  60


>gi|120402744|ref|YP_952573.1| rubredoxin-type Fe(Cys)4 protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955562|gb|ABM12567.1| Rubredoxin-type Fe(Cys)4 protein [Mycobacterium vanbaalenii PYR-1]
 gi|210076906|gb|ACJ06777.1| rubredoxin [Mycobacterium austroafricanum]
Length=60

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 52/59 (89%), Positives = 55/59 (94%), Gaps = 0/59 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           ++DYKLF C+QCGFEYDEA GWPEDGI  GTRWDDIPDDWSCPDCGAAKSDFEMVEVAR
Sbjct  1   MSDYKLFICVQCGFEYDEAKGWPEDGIEPGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59


>gi|118618065|ref|YP_906397.1| rubredoxin RubB [Mycobacterium ulcerans Agy99]
 gi|183981315|ref|YP_001849606.1| rubredoxin RubB [Mycobacterium marinum M]
 gi|118570175|gb|ABL04926.1| rubredoxin RubB [Mycobacterium ulcerans Agy99]
 gi|183174641|gb|ACC39751.1| rubredoxin RubB [Mycobacterium marinum M]
Length=60

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 50/59 (85%), Positives = 57/59 (97%), Gaps = 0/59 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           ++DYKL++C+QCGFEYDEALGWPEDGIA GTRWDDIP+DWSCPDCGAAK+DF MVEVAR
Sbjct  1   MSDYKLYQCVQCGFEYDEALGWPEDGIAPGTRWDDIPEDWSCPDCGAAKADFVMVEVAR  59


>gi|336459674|gb|EGO38609.1| rubredoxin [Mycobacterium avium subsp. paratuberculosis S397]
Length=60

 Score =  110 bits (276),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 51/59 (87%), Positives = 56/59 (95%), Gaps = 0/59 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           ++DY+LF C+QCGFEYDEA GWPEDGIA GTRWDDIP+DWSCPDCGAAKSDFEMVEVAR
Sbjct  1   MSDYRLFVCVQCGFEYDEAKGWPEDGIAPGTRWDDIPEDWSCPDCGAAKSDFEMVEVAR  59


>gi|270268857|gb|ACZ65963.1| putative rubredoxin [Mycobacterium chubuense NBB4]
Length=62

 Score =  110 bits (275),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 51/58 (88%), Positives = 53/58 (92%), Gaps = 0/58 (0%)

Query  2   NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
            DYKLF C+QCGF YDEA GWPEDGIA GTRWDDIPDDWSCPDCGAAKSDFEM+EVAR
Sbjct  4   TDYKLFVCVQCGFTYDEAKGWPEDGIAPGTRWDDIPDDWSCPDCGAAKSDFEMIEVAR  61


>gi|260066435|gb|ACX30749.1| RubA2 [Rhodococcus ruber]
Length=61

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 54/60 (90%), Gaps = 0/60 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
             DYKLFR +QCGFEYDEA GWPEDGI  GTRWDDIPDDWSCPDCGAAKSDFEMVEV+R+
Sbjct  2   TTDYKLFRRLQCGFEYDEAEGWPEDGIEPGTRWDDIPDDWSCPDCGAAKSDFEMVEVSRT  61


>gi|115511390|dbj|BAF34301.1| rubredoxin [Mycobacterium sp. TY-6]
Length=62

 Score =  109 bits (272),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 51/56 (92%), Positives = 53/56 (95%), Gaps = 0/56 (0%)

Query  4   YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           YKLF C+QCGFEYDEA GWPEDGIA GTRWDDIP+DWSCPDCGAAKSDFEMVEVAR
Sbjct  6   YKLFICVQCGFEYDEAKGWPEDGIAPGTRWDDIPEDWSCPDCGAAKSDFEMVEVAR  61


>gi|254822997|ref|ZP_05227998.1| rubredoxin-type Fe(Cys)4 protein [Mycobacterium intracellulare 
ATCC 13950]
Length=61

 Score =  109 bits (272),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 50/59 (85%), Positives = 54/59 (92%), Gaps = 0/59 (0%)

Query  2   NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
            DYKLF C+QCGFEYDEA GWPEDGIA GTRW DIP+DWSCPDCGAAK+DFEMVE+ARS
Sbjct  3   EDYKLFVCVQCGFEYDEAKGWPEDGIAPGTRWADIPEDWSCPDCGAAKTDFEMVEIARS  61


>gi|296393192|ref|YP_003658076.1| rubredoxin-type Fe(Cys)4 protein [Segniliparus rotundus DSM 44985]
 gi|296180339|gb|ADG97245.1| Rubredoxin-type Fe(Cys)4 protein [Segniliparus rotundus DSM 44985]
Length=63

 Score =  108 bits (271),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 49/58 (85%), Positives = 53/58 (92%), Gaps = 0/58 (0%)

Query  3   DYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           DYKL+ C+QCGFEYDEALGWPEDGIA GTRWDDIPDDW+CPDCGA K+DFEMVE  RS
Sbjct  6   DYKLYMCLQCGFEYDEALGWPEDGIAPGTRWDDIPDDWTCPDCGATKADFEMVEKVRS  63


>gi|342861453|ref|ZP_08718100.1| rubredoxin [Mycobacterium colombiense CECT 3035]
 gi|342130942|gb|EGT84231.1| rubredoxin [Mycobacterium colombiense CECT 3035]
Length=61

 Score =  108 bits (269),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 49/58 (85%), Positives = 55/58 (95%), Gaps = 0/58 (0%)

Query  2   NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           +DY++F C+QCGFEYDEA GWPEDGIA GTRWDDIP+DWSCPDCGAAK+DFEMVEVAR
Sbjct  3   DDYRVFICVQCGFEYDEAKGWPEDGIAPGTRWDDIPEDWSCPDCGAAKTDFEMVEVAR  60


>gi|333921454|ref|YP_004495035.1| Rubredoxin [Amycolicicoccus subflavus DQS3-9A1]
 gi|333483675|gb|AEF42235.1| Rubredoxin [Amycolicicoccus subflavus DQS3-9A1]
Length=61

 Score =  107 bits (268),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 48/58 (83%), Positives = 56/58 (97%), Gaps = 0/58 (0%)

Query  3   DYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           +YK++RC+QCGFEYDEA GWP++GIA GTRWDDIPDDWSCPDCGAAK+DFEMVEV+RS
Sbjct  4   EYKVYRCLQCGFEYDEAEGWPDEGIAPGTRWDDIPDDWSCPDCGAAKADFEMVEVSRS  61


>gi|226361673|ref|YP_002779451.1| rubredoxin [Rhodococcus opacus B4]
 gi|226240158|dbj|BAH50506.1| rubredoxin [Rhodococcus opacus B4]
Length=61

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 49/59 (84%), Positives = 54/59 (92%), Gaps = 0/59 (0%)

Query  2   NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
            D+KLFRC QCGFEYDEA GWPEDGI  GTRWDDIPDDWSCPDCGAAK+DF+MVEV+R+
Sbjct  3   TDFKLFRCAQCGFEYDEAEGWPEDGIEPGTRWDDIPDDWSCPDCGAAKADFDMVEVSRA  61


>gi|54026589|ref|YP_120831.1| putative rubredoxin [Nocardia farcinica IFM 10152]
 gi|54018097|dbj|BAD59467.1| putative rubredoxin [Nocardia farcinica IFM 10152]
Length=60

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 55/60 (92%), Gaps = 0/60 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           + +YKL++C+QCGFEYDEA GWPEDGIA GTRWDDIPDDW+CPDCGAAKSDF MVE+ RS
Sbjct  1   MTEYKLYQCVQCGFEYDEAEGWPEDGIAPGTRWDDIPDDWTCPDCGAAKSDFFMVEIERS  60


>gi|296140442|ref|YP_003647685.1| Rubredoxin-type Fe(Cys)4 protein [Tsukamurella paurometabola 
DSM 20162]
 gi|296028576|gb|ADG79346.1| Rubredoxin-type Fe(Cys)4 protein [Tsukamurella paurometabola 
DSM 20162]
Length=62

 Score =  107 bits (266),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 49/57 (86%), Positives = 53/57 (93%), Gaps = 0/57 (0%)

Query  4   YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           +KLFRC+QCGFEYDEA GWPEDGI  GTRWDDIP+DWSCPDCGAAK+DFEMVEVAR 
Sbjct  6   FKLFRCLQCGFEYDEAEGWPEDGIEPGTRWDDIPEDWSCPDCGAAKADFEMVEVARG  62


>gi|226305651|ref|YP_002765611.1| rubredoxin [Rhodococcus erythropolis PR4]
 gi|229489537|ref|ZP_04383400.1| rubredoxin [Rhodococcus erythropolis SK121]
 gi|61238478|sp|P0A4F0.1|RUBR4_RHOER RecName: Full=Rubredoxin 4
 gi|61238481|sp|P0A4F1.1|RUBR4_RHOSQ RecName: Full=Rubredoxin 4
 gi|15420778|gb|AAK97456.1|AF388182_4 rubredoxin 4 [Rhodococcus sp. Q15]
 gi|13750760|emb|CAC37040.1| rubredoxin 4 [Rhodococcus erythropolis]
 gi|226184768|dbj|BAH32872.1| rubredoxin [Rhodococcus erythropolis PR4]
 gi|229323634|gb|EEN89392.1| rubredoxin [Rhodococcus erythropolis SK121]
Length=60

 Score =  107 bits (266),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 49/59 (84%), Positives = 54/59 (92%), Gaps = 0/59 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           +NDYKL++C QCGFEYDEA+GWPEDGI  GTRWDDIP+DWSCPDCGAAKSDF MVEV R
Sbjct  1   MNDYKLYQCAQCGFEYDEAVGWPEDGIEPGTRWDDIPEDWSCPDCGAAKSDFFMVEVER  59


>gi|118473312|ref|YP_886211.1| rubredoxin [Mycobacterium smegmatis str. MC2 155]
 gi|118174599|gb|ABK75495.1| rubredoxin [Mycobacterium smegmatis str. MC2 155]
Length=60

 Score =  105 bits (263),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 47/59 (80%), Positives = 55/59 (94%), Gaps = 0/59 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           ++ Y+LF C+QCGFEYDEA GWPEDGIA GTRW+DIP+DWSCPDCGAAKSDF+MVEV+R
Sbjct  1   MSHYRLFVCVQCGFEYDEAKGWPEDGIAPGTRWEDIPEDWSCPDCGAAKSDFDMVEVSR  59


>gi|15420771|gb|AAK97450.1|AF388181_3 rubredoxin 2 [Rhodococcus sp. Q15]
Length=63

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 47/56 (84%), Positives = 52/56 (93%), Gaps = 0/56 (0%)

Query  4   YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           YKLFRC+QCGFEYDEA+GWP+DGI  GTRWD+IP+DWSCPDCGAAK DFEMVEV R
Sbjct  8   YKLFRCLQCGFEYDEAIGWPDDGIEPGTRWDEIPEDWSCPDCGAAKVDFEMVEVNR  63


>gi|238734617|gb|ACR55691.1| rubredoxin 4 [Geobacillus sp. MH-1]
Length=60

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 48/59 (82%), Positives = 53/59 (90%), Gaps = 0/59 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           +NDYKL++C QCG EYDEA+GWPEDGI  GTRWDDIP+DWSCPDCGAAKSDF MVEV R
Sbjct  1   MNDYKLYQCAQCGLEYDEAVGWPEDGIEPGTRWDDIPEDWSCPDCGAAKSDFFMVEVER  59


>gi|229494527|ref|ZP_04388290.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229318889|gb|EEN84747.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=68

 Score =  105 bits (261),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 47/56 (84%), Positives = 52/56 (93%), Gaps = 0/56 (0%)

Query  4   YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           YKLFRC+QCGFEYDEA+GWP+DGI  GTRWD+IP+DWSCPDCGAAK DFEMVEV R
Sbjct  13  YKLFRCLQCGFEYDEAIGWPDDGIEPGTRWDEIPEDWSCPDCGAAKVDFEMVEVDR  68


>gi|169630677|ref|YP_001704326.1| rubredoxin RubB [Mycobacterium abscessus ATCC 19977]
 gi|169242644|emb|CAM63672.1| Probable rubredoxin RubB [Mycobacterium abscessus]
Length=67

 Score =  105 bits (261),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 46/58 (80%), Positives = 54/58 (94%), Gaps = 0/58 (0%)

Query  2   NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           ++YKL+ C+QCGF+YDEALGWPEDGI  GTRWDDIP+DWSCPDCGAAK+DF MVE+AR
Sbjct  9   SEYKLYECMQCGFQYDEALGWPEDGIEPGTRWDDIPEDWSCPDCGAAKADFVMVEIAR  66


>gi|111019527|ref|YP_702499.1| alkene monooxygenase rubredoxin [Rhodococcus jostii RHA1]
 gi|110819057|gb|ABG94341.1| alkene monooxygenase rubredoxin [Rhodococcus jostii RHA1]
Length=61

 Score =  105 bits (261),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 47/59 (80%), Positives = 54/59 (92%), Gaps = 0/59 (0%)

Query  2   NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
            D+KL+RC QCGFEYDEA GWPEDGI  GTRWDDIP+DWSCPDCGAAK+DF+MVEV+R+
Sbjct  3   TDFKLYRCAQCGFEYDEAEGWPEDGIEPGTRWDDIPEDWSCPDCGAAKADFDMVEVSRA  61


>gi|226304237|ref|YP_002764195.1| rubredoxin [Rhodococcus erythropolis PR4]
 gi|31563214|sp|Q9AE63.1|RUBR2_RHOER RecName: Full=Rubredoxin-2
 gi|13750742|emb|CAC37043.1| rubredoxin 2 [Rhodococcus erythropolis]
 gi|226183352|dbj|BAH31456.1| rubredoxin [Rhodococcus erythropolis PR4]
Length=63

 Score =  105 bits (261),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 47/56 (84%), Positives = 52/56 (93%), Gaps = 0/56 (0%)

Query  4   YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           YKLFRC+QCGFEYDEA+GWP+DGI  GTRWD+IP+DWSCPDCGAAK DFEMVEV R
Sbjct  8   YKLFRCLQCGFEYDEAIGWPDDGIEPGTRWDEIPEDWSCPDCGAAKVDFEMVEVDR  63


>gi|315143108|gb|ADT82703.1| rubredoxin 4 [Gordonia sp. SoCg]
Length=59

 Score =  104 bits (259),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 49/56 (88%), Positives = 51/56 (92%), Gaps = 0/56 (0%)

Query  4   YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           +KLFRC  CGFEYDE LGWPEDGI  GTRWDDIPDDWSCPDCGAAK+DFEMVEVAR
Sbjct  3   FKLFRCEVCGFEYDEELGWPEDGIEPGTRWDDIPDDWSCPDCGAAKADFEMVEVAR  58


>gi|54649962|dbj|BAD67022.1| rubredoxin 4 [Gordonia sp. TF6]
Length=59

 Score =  102 bits (255),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 48/57 (85%), Positives = 51/57 (90%), Gaps = 0/57 (0%)

Query  3   DYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVAR  59
           ++KLFRC  CGFEYDE LGWPEDGI  GTRW DIPDDWSCPDCGAAK+DFEMVEVAR
Sbjct  2   NFKLFRCEVCGFEYDEELGWPEDGIEPGTRWADIPDDWSCPDCGAAKADFEMVEVAR  58


>gi|312140680|ref|YP_004008016.1| rubredoxin rubb [Rhodococcus equi 103S]
 gi|325675690|ref|ZP_08155374.1| rubredoxin/rubredoxin reductase [Rhodococcus equi ATCC 33707]
 gi|311890019|emb|CBH49337.1| rubredoxin RubB [Rhodococcus equi 103S]
 gi|325553661|gb|EGD23339.1| rubredoxin/rubredoxin reductase [Rhodococcus equi ATCC 33707]
Length=60

 Score =  101 bits (252),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 46/60 (77%), Positives = 52/60 (87%), Gaps = 0/60 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           + DYKL++C QCGFEYDE LGWP++GIA GTRW+DIPDDW CPDCGAAK DF MVEV RS
Sbjct  1   MKDYKLYQCAQCGFEYDEELGWPDEGIAPGTRWEDIPDDWRCPDCGAAKEDFFMVEVERS  60


>gi|289751944|ref|ZP_06511322.1| rubredoxin rubB [Mycobacterium tuberculosis T92]
 gi|289692531|gb|EFD59960.1| rubredoxin rubB [Mycobacterium tuberculosis T92]
Length=52

 Score = 97.4 bits (241),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%), Gaps = 0/47 (0%)

Query  14  FEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           FEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS
Sbjct  6   FEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  52


>gi|262373051|ref|ZP_06066330.1| rubredoxin [Acinetobacter junii SH205]
 gi|308446967|ref|XP_003087304.1| hypothetical protein CRE_19635 [Caenorhabditis remanei]
 gi|13358861|dbj|BAB33291.1| rubredoxin [Acinetobacter sp. M-1]
 gi|262313076|gb|EEY94161.1| rubredoxin [Acinetobacter junii SH205]
 gi|308257655|gb|EFP01608.1| hypothetical protein CRE_19635 [Caenorhabditis remanei]
Length=54

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 38/53 (72%), Positives = 48/53 (91%), Gaps = 0/53 (0%)

Query  5   KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV  57
           K ++CI CG+ YDEA GWP+DGIAAGT+W+DIPDDW+CPDCG +K+DFEMVE+
Sbjct  2   KKYQCIVCGWIYDEAEGWPQDGIAAGTKWEDIPDDWTCPDCGVSKADFEMVEI  54


>gi|270156666|ref|ZP_06185323.1| rubredoxin [Legionella longbeachae D-4968]
 gi|289164885|ref|YP_003455023.1| Rubredoxin (Rd) [Legionella longbeachae NSW150]
 gi|269988691|gb|EEZ94945.1| rubredoxin [Legionella longbeachae D-4968]
 gi|288858058|emb|CBJ11918.1| Rubredoxin (Rd) [Legionella longbeachae NSW150]
Length=58

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 39/57 (69%), Positives = 47/57 (83%), Gaps = 0/57 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV  57
           + +YK + C+ CGF YDEA GWPEDGIAAGT WDD+P++W CPDCGA K DFEMVE+
Sbjct  1   MQEYKKYICVICGFIYDEADGWPEDGIAAGTLWDDVPENWFCPDCGAGKEDFEMVEI  57


>gi|26992047|ref|NP_747472.1| rubredoxin/rubredoxin reductase [Pseudomonas putida KT2440]
 gi|24987184|gb|AAN70936.1|AE016737_7 rubredoxin/rubredoxin reductase [Pseudomonas putida KT2440]
Length=461

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 33/54 (62%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  5   KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVA  58
           K + CI CG  YDEA GWP+DGIA GTRW+D+P+DW CP+C   K+DFEM+E++
Sbjct  2   KTWLCIICGLIYDEAKGWPDDGIAPGTRWEDVPEDWLCPECKVGKADFEMIELS  55


>gi|126641045|ref|YP_001084029.1| rubredoxin [Acinetobacter baumannii ATCC 17978]
 gi|169633920|ref|YP_001707656.1| rubredoxin [Acinetobacter baumannii SDF]
 gi|169796808|ref|YP_001714601.1| rubredoxin [Acinetobacter baumannii AYE]
 41 more sequence titles
 Length=54

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 37/53 (70%), Positives = 48/53 (91%), Gaps = 0/53 (0%)

Query  5   KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV  57
           K ++CI CG+ YDEA GWP+DGIAAGT+W+DIPDDW+CPDCG +K+DFEM+E+
Sbjct  2   KKYQCIVCGWIYDEAEGWPQDGIAAGTKWEDIPDDWTCPDCGVSKADFEMIEI  54


>gi|262368779|ref|ZP_06062108.1| rubredoxin [Acinetobacter johnsonii SH046]
 gi|262316457|gb|EEY97495.1| rubredoxin [Acinetobacter johnsonii SH046]
Length=54

 Score = 87.4 bits (215),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 38/53 (72%), Positives = 46/53 (87%), Gaps = 0/53 (0%)

Query  5   KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV  57
           K ++CI CG+ YDEA GWP+DGI AGT+WDDIPDDW+CPDCG +K DFEMVE+
Sbjct  2   KKYQCIVCGWIYDEAEGWPQDGIVAGTKWDDIPDDWTCPDCGVSKIDFEMVEI  54


>gi|29655166|ref|NP_820858.1| rubredoxin [Coxiella burnetii RSA 493]
 gi|153206176|ref|ZP_01945439.1| rubredoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154707052|ref|YP_001423544.1| rubredoxin [Coxiella burnetii Dugway 5J108-111]
 11 more sequence titles
 Length=57

 Score = 87.4 bits (215),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 37/55 (68%), Positives = 46/55 (84%), Gaps = 0/55 (0%)

Query  4   YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVA  58
           YK + C+ CGF Y+E  GWPEDGIA GTRW+++P+DW CP+CGA KSDFEMVEV+
Sbjct  3   YKKYMCLLCGFIYEEEKGWPEDGIAPGTRWEEVPEDWLCPECGAMKSDFEMVEVS  57


>gi|255319142|ref|ZP_05360360.1| rubredoxin [Acinetobacter radioresistens SK82]
 gi|262379274|ref|ZP_06072430.1| rubredoxin [Acinetobacter radioresistens SH164]
 gi|255303788|gb|EET82987.1| rubredoxin [Acinetobacter radioresistens SK82]
 gi|262298731|gb|EEY86644.1| rubredoxin [Acinetobacter radioresistens SH164]
Length=54

 Score = 87.0 bits (214),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 37/53 (70%), Positives = 47/53 (89%), Gaps = 0/53 (0%)

Query  5   KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV  57
           K ++CI CG+ YDEA GWP+DGIA GT+W+DIPDDW+CPDCG +K+DFEM+EV
Sbjct  2   KKYQCIVCGWIYDEAQGWPQDGIAPGTKWEDIPDDWTCPDCGVSKADFEMIEV  54


>gi|269124824|ref|YP_003298194.1| Rubredoxin-type Fe(Cys)4 protein [Thermomonospora curvata DSM 
43183]
 gi|268309782|gb|ACY96156.1| Rubredoxin-type Fe(Cys)4 protein [Thermomonospora curvata DSM 
43183]
Length=62

 Score = 87.0 bits (214),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 38/57 (67%), Positives = 47/57 (83%), Gaps = 0/57 (0%)

Query  4   YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS  60
           Y+ ++C+ CG+ YDEA GWPE+GI  GTRW+DIPDDW CPDC  AKSDFEMVE+ R+
Sbjct  6   YRTWQCLGCGWIYDEAEGWPEEGIPPGTRWEDIPDDWCCPDCQMAKSDFEMVEITRA  62


>gi|339328354|ref|YP_004688046.1| hypothetical protein CNE_BB1p05880 [Cupriavidus necator N-1]
 gi|338170955|gb|AEI82008.1| hypothetical protein CNE_BB1p05880 [Cupriavidus necator N-1]
Length=74

 Score = 87.0 bits (214),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 37/57 (65%), Positives = 47/57 (83%), Gaps = 0/57 (0%)

Query  1   VNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV  57
           + ++K+++C+ CGF YDEA+G PE+GIA GTRW DIPDDW CP+C   KSDFEMVEV
Sbjct  18  LAEFKVWQCVLCGFVYDEAMGMPEEGIAPGTRWADIPDDWMCPECSVGKSDFEMVEV  74


>gi|254514245|ref|ZP_05126306.1| rubredoxin reductase [gamma proteobacterium NOR5-3]
 gi|219676488|gb|EED32853.1| rubredoxin reductase [gamma proteobacterium NOR5-3]
Length=451

 Score = 87.0 bits (214),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 35/52 (68%), Positives = 41/52 (79%), Gaps = 0/52 (0%)

Query  7   FRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVA  58
           + CI CG  YDEALGWP+DGIA GTRW+D+PDDW CPDCG  K DFE++  A
Sbjct  4   YECIVCGLIYDEALGWPDDGIAPGTRWEDVPDDWLCPDCGVGKEDFELINEA  55


>gi|262375836|ref|ZP_06069068.1| rubredoxin [Acinetobacter lwoffii SH145]
 gi|262309439|gb|EEY90570.1| rubredoxin [Acinetobacter lwoffii SH145]
Length=54

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 37/53 (70%), Positives = 46/53 (87%), Gaps = 0/53 (0%)

Query  5   KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV  57
           + F+CI CG+ YDEA GWP+DGI AGT+W+DIPDDW+CPDCG +K DFEM+EV
Sbjct  2   RKFQCIVCGWIYDEAEGWPQDGIVAGTKWEDIPDDWTCPDCGVSKVDFEMIEV  54


>gi|262278303|ref|ZP_06056088.1| rubredoxin-NAD(+) reductase [Acinetobacter calcoaceticus RUH2202]
 gi|262258654|gb|EEY77387.1| rubredoxin-NAD(+) reductase [Acinetobacter calcoaceticus RUH2202]
Length=451

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Composition-based stats.
 Identities = 32/49 (66%), Positives = 41/49 (84%), Gaps = 0/49 (0%)

Query  9   CIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV  57
           CI CG+ YDEA GWP+DGIA GT+W+DIPDDW CP+C   K+DFEM+++
Sbjct  6   CIVCGWIYDEAKGWPDDGIAPGTKWEDIPDDWMCPECQVGKADFEMLDI  54



Lambda     K      H
   0.321    0.141    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127366071138


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40