BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3251c Length=55 Score E Sequences producing significant alignments: (Bits) Value gi|15842840|ref|NP_337877.1| rubredoxin [Mycobacterium tuberculo... 114 4e-24 gi|15610387|ref|NP_217768.1| rubredoxin RUBA [Mycobacterium tube... 114 4e-24 gi|118618066|ref|YP_906398.1| rubredoxin RubA [Mycobacterium ulc... 102 3e-20 gi|240172606|ref|ZP_04751265.1| rubredoxin [Mycobacterium kansas... 101 4e-20 gi|270268856|gb|ACZ65962.1| putative rubredoxin [Mycobacterium c... 97.1 9e-19 gi|115511389|dbj|BAF34300.1| rubredoxin [Mycobacterium sp. TY-6] 96.7 9e-19 gi|118470183|ref|YP_886210.1| rubredoxin [Mycobacterium smegmati... 95.9 2e-18 gi|54026590|ref|YP_120832.1| putative rubredoxin [Nocardia farci... 95.1 3e-18 gi|333991630|ref|YP_004524244.1| rubredoxin [Mycobacterium sp. J... 93.6 9e-18 gi|120402743|ref|YP_952572.1| rubredoxin-type Fe(Cys)4 protein [... 92.8 2e-17 gi|210076905|gb|ACJ06776.1| rubredoxin [Mycobacterium austroafri... 92.4 2e-17 gi|226305650|ref|YP_002765610.1| rubredoxin [Rhodococcus erythro... 91.3 4e-17 gi|145225298|ref|YP_001135976.1| rubredoxin-type Fe(Cys)4 protei... 90.9 6e-17 gi|296168954|ref|ZP_06850623.1| rubredoxin [Mycobacterium parasc... 90.1 9e-17 gi|326383569|ref|ZP_08205255.1| rubredoxin [Gordonia neofelifaec... 90.1 1e-16 gi|262204049|ref|YP_003275257.1| alkane 1-monooxygenase [Gordoni... 90.1 1e-16 gi|315143107|gb|ADT82702.1| rubredoxin 3 [Gordonia sp. SoCg] 89.4 1e-16 gi|111019526|ref|YP_702498.1| alkene monooxygenase rubredoxin [R... 89.4 2e-16 gi|260066434|gb|ACX30748.1| RubA1 [Rhodococcus ruber] >gi|313665... 89.0 2e-16 gi|126433972|ref|YP_001069663.1| rubredoxin-type Fe(Cys)4 protei... 89.0 2e-16 gi|302530423|ref|ZP_07282765.1| alkane 1-monooxygenase [Streptom... 89.0 2e-16 gi|312140681|ref|YP_004008017.1| rubredoxin ruba [Rhodococcus eq... 88.6 3e-16 gi|300788244|ref|YP_003768535.1| alkane 1-monooxygenase [Amycola... 88.6 3e-16 gi|13872675|emb|CAB51024.2| alkane 1-monooxygenase [Prauserella ... 88.6 3e-16 gi|336459673|gb|EGO38608.1| rubredoxin [Mycobacterium avium subs... 88.2 3e-16 gi|254427944|ref|ZP_05041651.1| rubredoxin, putative [Alcanivora... 88.2 4e-16 gi|118464421|ref|YP_883356.1| rubredoxin [Mycobacterium avium 10... 87.0 8e-16 gi|84497855|ref|ZP_00996652.1| putative rubredoxin [Janibacter s... 86.7 1e-15 gi|254822998|ref|ZP_05227999.1| rubredoxin [Mycobacterium intrac... 86.3 1e-15 gi|226304236|ref|YP_002764194.1| rubredoxin [Rhodococcus erythro... 86.3 1e-15 gi|108798305|ref|YP_638502.1| rubredoxin-type Fe(Cys)4 protein [... 86.3 2e-15 gi|226361672|ref|YP_002779450.1| rubredoxin [Rhodococcus opacus ... 85.9 2e-15 gi|333992639|ref|YP_004525253.1| rubredoxin [Mycobacterium sp. J... 85.5 2e-15 gi|54649961|dbj|BAD67021.1| rubredoxin 3 [Gordonia sp. TF6] 85.5 3e-15 gi|229494405|ref|ZP_04388168.1| rubredoxin [Rhodococcus erythrop... 85.1 3e-15 gi|15420770|gb|AAK97449.1|AF388181_2 rubredoxin 1 [Rhodococcus s... 85.1 3e-15 gi|13750741|emb|CAC37042.1| rubredoxin 1 [Rhodococcus erythropolis] 85.1 3e-15 gi|226349673|ref|YP_002776787.1| rubredoxin [Rhodococcus opacus ... 85.1 3e-15 gi|326332420|ref|ZP_08198697.1| alkane-1 monooxygenase [Nocardio... 84.7 4e-15 gi|296393193|ref|YP_003658077.1| rubredoxin-type Fe(Cys)4 protei... 84.7 4e-15 gi|254776650|ref|ZP_05218166.1| rubredoxin [Mycobacterium avium ... 84.7 4e-15 gi|325001295|ref|ZP_08122407.1| alkane 1-monooxygenase [Pseudono... 82.4 2e-14 gi|296140443|ref|YP_003647686.1| Rubredoxin-type Fe(Cys)4 protei... 82.0 2e-14 gi|120553376|ref|YP_957727.1| rubredoxin-type Fe(Cys)4 protein [... 81.3 4e-14 gi|342861454|ref|ZP_08718101.1| rubredoxin [Mycobacterium colomb... 80.9 5e-14 gi|13591776|gb|AAK31348.1|AF350429_1 alkane hydroxylase-rubredox... 80.5 8e-14 gi|284047174|ref|YP_003397514.1| Rubredoxin-type Fe(Cys)4 protei... 80.1 9e-14 gi|120553545|ref|YP_957896.1| rubredoxin-type Fe(Cys)4 protein [... 80.1 9e-14 gi|146305479|ref|YP_001185944.1| rubredoxin-type Fe(Cys)4 protei... 80.1 9e-14 gi|167621705|ref|YP_001672213.1| rubredoxin-type Fe(Cys)4 protei... 80.1 9e-14 >gi|15842840|ref|NP_337877.1| rubredoxin [Mycobacterium tuberculosis CDC1551] gi|167967920|ref|ZP_02550197.1| rubredoxin [Mycobacterium tuberculosis H37Ra] gi|254233862|ref|ZP_04927187.1| rubredoxin rubA [Mycobacterium tuberculosis C] 30 more sequence titles Length=56 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 55/55 (100%), Positives = 55/55 (100%), Gaps = 0/55 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 55 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG Sbjct 2 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 56 >gi|15610387|ref|NP_217768.1| rubredoxin RUBA [Mycobacterium tuberculosis H37Rv] gi|31794431|ref|NP_856924.1| rubredoxin RUBA [Mycobacterium bovis AF2122/97] gi|121639140|ref|YP_979364.1| putative rubredoxin rubA [Mycobacterium bovis BCG str. Pasteur 1173P2] 41 more sequence titles Length=55 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 55/55 (100%), Positives = 55/55 (100%), Gaps = 0/55 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 55 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG Sbjct 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 55 >gi|118618066|ref|YP_906398.1| rubredoxin RubA [Mycobacterium ulcerans Agy99] gi|183981314|ref|YP_001849605.1| rubredoxin RubA [Mycobacterium marinum M] gi|118570176|gb|ABL04927.1| rubredoxin RubA [Mycobacterium ulcerans Agy99] gi|183174640|gb|ACC39750.1| rubredoxin RubA [Mycobacterium marinum M] Length=56 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 46/55 (84%), Positives = 49/55 (90%), Gaps = 0/55 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 55 M AYRCPVCDY YDE GD REGFPAGT WDQIPDDWCCPDC+VREKVDFE++GG Sbjct 1 MTAYRCPVCDYTYDEGKGDPREGFPAGTRWDQIPDDWCCPDCSVREKVDFERMGG 55 >gi|240172606|ref|ZP_04751265.1| rubredoxin [Mycobacterium kansasii ATCC 12478] Length=54 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 47/53 (89%), Positives = 50/53 (95%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 MAAYRCPVCDYVYDEA G+AREGFPAGT WDQIPD+WCCPDCAVREK DFEK+ Sbjct 2 MAAYRCPVCDYVYDEAKGEAREGFPAGTRWDQIPDEWCCPDCAVREKPDFEKV 54 >gi|270268856|gb|ACZ65962.1| putative rubredoxin [Mycobacterium chubuense NBB4] Length=57 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 45/55 (82%), Positives = 49/55 (90%), Gaps = 0/55 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 55 M+AYRCP CDYVYDEA G REGFPAGT WD++PDDWCCPDCAVREKVDFE+IG Sbjct 1 MSAYRCPGCDYVYDEAKGAPREGFPAGTPWDRVPDDWCCPDCAVREKVDFEEIGA 55 >gi|115511389|dbj|BAF34300.1| rubredoxin [Mycobacterium sp. TY-6] Length=57 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 42/54 (78%), Positives = 48/54 (89%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M+AYRCP+CDYVYDEA G AREGFP GT W ++PDDWCCPDC VREK+DFE+IG Sbjct 1 MSAYRCPICDYVYDEAKGAAREGFPPGTAWTEVPDDWCCPDCGVREKIDFEEIG 54 >gi|118470183|ref|YP_886210.1| rubredoxin [Mycobacterium smegmatis str. MC2 155] gi|118171470|gb|ABK72366.1| rubredoxin [Mycobacterium smegmatis str. MC2 155] Length=57 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 41/54 (76%), Positives = 48/54 (89%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M++YRCPVCDY+YDEA G AREGFP GT WD +PDDWCCPDC VREK+DFE++G Sbjct 1 MSSYRCPVCDYIYDEAKGAAREGFPPGTAWDDVPDDWCCPDCGVREKIDFEEMG 54 >gi|54026590|ref|YP_120832.1| putative rubredoxin [Nocardia farcinica IFM 10152] gi|54018098|dbj|BAD59468.1| putative rubredoxin [Nocardia farcinica IFM 10152] Length=57 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 41/54 (76%), Positives = 46/54 (86%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M+AYRCPVCDYVYDE NG+ EGFPAGT W +PDDWCCPDC VREK+DFE +G Sbjct 1 MSAYRCPVCDYVYDETNGEPHEGFPAGTPWSAVPDDWCCPDCGVREKIDFEPVG 54 >gi|333991630|ref|YP_004524244.1| rubredoxin [Mycobacterium sp. JDM601] gi|333487598|gb|AEF36990.1| rubredoxin RubA_1 [Mycobacterium sp. JDM601] Length=56 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 43/53 (82%), Positives = 47/53 (89%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 MA+YRCP CDYVYDEA G REGFPAGT W Q+PDDWCCPDCAVREKVDFE++ Sbjct 2 MASYRCPGCDYVYDEALGAPREGFPAGTPWAQVPDDWCCPDCAVREKVDFEQV 54 >gi|120402743|ref|YP_952572.1| rubredoxin-type Fe(Cys)4 protein [Mycobacterium vanbaalenii PYR-1] gi|119955561|gb|ABM12566.1| Rubredoxin-type Fe(Cys)4 protein [Mycobacterium vanbaalenii PYR-1] Length=57 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 40/54 (75%), Positives = 48/54 (89%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M A+RCP CDYVYDE+ G+ REGFPAGT W ++PD+WCCPDCAVREKVDFE++G Sbjct 1 MTAFRCPGCDYVYDESKGEPREGFPAGTAWAEVPDEWCCPDCAVREKVDFEEMG 54 >gi|210076905|gb|ACJ06776.1| rubredoxin [Mycobacterium austroafricanum] Length=57 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 39/54 (73%), Positives = 48/54 (89%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M A+RCP CDYVYDE+ G+ REGFPAGT W ++PD+WCCPDCAVREK+DFE++G Sbjct 1 MTAFRCPGCDYVYDESKGEPREGFPAGTAWAEVPDEWCCPDCAVREKIDFEEMG 54 >gi|226305650|ref|YP_002765610.1| rubredoxin [Rhodococcus erythropolis PR4] gi|229489470|ref|ZP_04383333.1| rubredoxin [Rhodococcus erythropolis SK121] gi|61238471|sp|P0A4E8.1|RUBR3_RHOER RecName: Full=Rubredoxin 3 6 more sequence titles Length=61 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 39/53 (74%), Positives = 46/53 (87%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 M++YRCPVC+YVYDE+ G REGFPAGT WD +PDDWCCPDC VREK+DFE + Sbjct 1 MSSYRCPVCEYVYDESKGAPREGFPAGTPWDAVPDDWCCPDCGVREKLDFEPM 53 >gi|145225298|ref|YP_001135976.1| rubredoxin-type Fe(Cys)4 protein [Mycobacterium gilvum PYR-GCK] gi|315445595|ref|YP_004078474.1| rubredoxin [Mycobacterium sp. Spyr1] gi|145217784|gb|ABP47188.1| Rubredoxin-type Fe(Cys)4 protein [Mycobacterium gilvum PYR-GCK] gi|315263898|gb|ADU00640.1| rubredoxin [Mycobacterium sp. Spyr1] Length=57 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 40/54 (75%), Positives = 46/54 (86%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M AYRCP CDY YDE+ G+ REGFPAGT W +PD+WCCPDCAVREKVDFE++G Sbjct 1 MTAYRCPGCDYTYDESKGEPREGFPAGTRWADVPDEWCCPDCAVREKVDFEEMG 54 >gi|296168954|ref|ZP_06850623.1| rubredoxin [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896423|gb|EFG76076.1| rubredoxin [Mycobacterium parascrofulaceum ATCC BAA-614] Length=75 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 43/55 (79%), Positives = 45/55 (82%), Gaps = 0/55 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 55 M+AYRCP CDYVYDEANG REGFPAGT + IPDDWCCPDCAVREK DFE G Sbjct 1 MSAYRCPGCDYVYDEANGAPREGFPAGTPFADIPDDWCCPDCAVREKADFEGTSG 55 >gi|326383569|ref|ZP_08205255.1| rubredoxin [Gordonia neofelifaecis NRRL B-59395] gi|326197653|gb|EGD54841.1| rubredoxin [Gordonia neofelifaecis NRRL B-59395] Length=55 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 41/54 (76%), Positives = 44/54 (82%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M++YRC VCDYVYDEA G REGFPAGT W IPDDW CPDC VREK+DFE IG Sbjct 1 MSSYRCEVCDYVYDEATGAPREGFPAGTAWTDIPDDWACPDCGVREKIDFELIG 54 >gi|262204049|ref|YP_003275257.1| alkane 1-monooxygenase [Gordonia bronchialis DSM 43247] gi|262087396|gb|ACY23364.1| Alkane 1-monooxygenase [Gordonia bronchialis DSM 43247] Length=470 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 36/48 (75%), Positives = 37/48 (78%), Gaps = 0/48 (0%) Query 3 AYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 A RCP CDYVYD A G+ EGF AGT W IPDDWCCPDC VREKVDF Sbjct 414 AARCPGCDYVYDVAEGNELEGFAAGTAWRDIPDDWCCPDCGVREKVDF 461 >gi|315143107|gb|ADT82702.1| rubredoxin 3 [Gordonia sp. SoCg] Length=55 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 39/54 (73%), Positives = 45/54 (84%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M+AYRCPVCD+VYD+A G REGFPAGT W IPDDW CPDC VREK+DFE++ Sbjct 1 MSAYRCPVCDFVYDQAAGAPREGFPAGTAWSDIPDDWACPDCGVREKIDFEEVA 54 >gi|111019526|ref|YP_702498.1| alkene monooxygenase rubredoxin [Rhodococcus jostii RHA1] gi|110819056|gb|ABG94340.1| alkene monooxygenase rubredoxin [Rhodococcus jostii RHA1] Length=55 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 40/51 (79%), Positives = 45/51 (89%), Gaps = 0/51 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFE 51 MAAY+CPVCDYVYDEA+G REGFPAGT W +PDDWCCPDC VREK+DF+ Sbjct 1 MAAYQCPVCDYVYDEASGAPREGFPAGTAWADVPDDWCCPDCGVREKIDFD 51 >gi|260066434|gb|ACX30748.1| RubA1 [Rhodococcus ruber] gi|313665975|gb|ADR72655.1| RubA [Rhodococcus sp. BCP1] Length=53 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 41/51 (81%), Positives = 43/51 (85%), Gaps = 0/51 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFE 51 MAAY CPVC+YVYDE G REGFPAGT WD IPDDWCCPDC VREK+DFE Sbjct 1 MAAYECPVCNYVYDETAGAPREGFPAGTPWDAIPDDWCCPDCGVREKIDFE 51 >gi|126433972|ref|YP_001069663.1| rubredoxin-type Fe(Cys)4 protein [Mycobacterium sp. JLS] gi|126233772|gb|ABN97172.1| Rubredoxin-type Fe(Cys)4 protein [Mycobacterium sp. JLS] Length=53 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/53 (82%), Positives = 44/53 (84%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 M AYRCP CDYVYDEA G REGFPAGT WD IP+DW CPDCAVREKVDFE I Sbjct 1 MTAYRCPGCDYVYDEAKGAPREGFPAGTPWDDIPEDWGCPDCAVREKVDFEAI 53 >gi|302530423|ref|ZP_07282765.1| alkane 1-monooxygenase [Streptomyces sp. AA4] gi|302439318|gb|EFL11134.1| alkane 1-monooxygenase [Streptomyces sp. AA4] Length=466 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 35/45 (78%), Positives = 35/45 (78%), Gaps = 0/45 (0%) Query 6 CPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 CP C YVYDE GD REGFPAGT W IPD WCCPDC VREKVDF Sbjct 414 CPGCGYVYDEQRGDPREGFPAGTPWSSIPDSWCCPDCGVREKVDF 458 >gi|312140681|ref|YP_004008017.1| rubredoxin ruba [Rhodococcus equi 103S] gi|325675689|ref|ZP_08155373.1| rubredoxin/rubredoxin reductase [Rhodococcus equi ATCC 33707] gi|311890020|emb|CBH49338.1| rubredoxin RubA [Rhodococcus equi 103S] gi|325553660|gb|EGD23338.1| rubredoxin/rubredoxin reductase [Rhodococcus equi ATCC 33707] Length=53 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 38/53 (72%), Positives = 45/53 (85%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 M+AYRCPVC++V+DEA G REGFPAGT W +PDDWCCPDC VREK+DFE + Sbjct 1 MSAYRCPVCEFVFDEAVGAPREGFPAGTSWATVPDDWCCPDCGVREKIDFEPV 53 >gi|300788244|ref|YP_003768535.1| alkane 1-monooxygenase [Amycolatopsis mediterranei U32] gi|299797758|gb|ADJ48133.1| alkane 1-monooxygenase [Amycolatopsis mediterranei U32] gi|340529830|gb|AEK45035.1| alkane 1-monooxygenase [Amycolatopsis mediterranei S699] Length=472 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 36/46 (79%), Positives = 36/46 (79%), Gaps = 0/46 (0%) Query 5 RCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 RCP C YVYDE GD REGFPAGT W IPD WCCPDC VREKVDF Sbjct 413 RCPGCGYVYDEQRGDPREGFPAGTPWAAIPDSWCCPDCGVREKVDF 458 >gi|13872675|emb|CAB51024.2| alkane 1-monooxygenase [Prauserella rugosa] Length=490 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 36/45 (80%), Positives = 36/45 (80%), Gaps = 0/45 (0%) Query 6 CPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 CP C YVYDEA GD REGFPAGT W IPD WCCPDC VREKVDF Sbjct 438 CPGCGYVYDEATGDPREGFPAGTPWSAIPDSWCCPDCGVREKVDF 482 >gi|336459673|gb|EGO38608.1| rubredoxin [Mycobacterium avium subsp. paratuberculosis S397] Length=57 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 41/55 (75%), Positives = 44/55 (80%), Gaps = 0/55 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 55 M YRCP CDY+YDEA G REGFPAGT + IPDDWCCPDCAVREKVDFE + G Sbjct 1 MTRYRCPGCDYIYDEAKGAPREGFPAGTSFADIPDDWCCPDCAVREKVDFENLIG 55 >gi|254427944|ref|ZP_05041651.1| rubredoxin, putative [Alcanivorax sp. DG881] gi|196194113|gb|EDX89072.1| rubredoxin, putative [Alcanivorax sp. DG881] Length=435 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 34/47 (73%), Positives = 39/47 (83%), Gaps = 0/47 (0%) Query 4 YRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 ++CP C Y YDE +GD +EGFPAGT W QIPDDW CPDCAVREK+DF Sbjct 384 FQCPNCSYTYDERHGDEKEGFPAGTRWLQIPDDWPCPDCAVREKIDF 430 >gi|118464421|ref|YP_883356.1| rubredoxin [Mycobacterium avium 104] gi|118165708|gb|ABK66605.1| rubredoxin [Mycobacterium avium 104] Length=57 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 41/55 (75%), Positives = 44/55 (80%), Gaps = 0/55 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 55 M YRCP CDY+YDEA G REGFPAGT + IPDDWCCPDCAVREKVDFE + G Sbjct 1 MTRYRCPGCDYIYDEAKGAPREGFPAGTPFADIPDDWCCPDCAVREKVDFENLIG 55 >gi|84497855|ref|ZP_00996652.1| putative rubredoxin [Janibacter sp. HTCC2649] gi|84381355|gb|EAP97238.1| putative rubredoxin [Janibacter sp. HTCC2649] Length=475 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 35/48 (73%), Positives = 36/48 (75%), Gaps = 0/48 (0%) Query 3 AYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 A RCP C Y YD G+ REGF AGT W QIPDDWCCPDC VREKVDF Sbjct 420 AARCPGCGYTYDVVAGEEREGFAAGTSWGQIPDDWCCPDCGVREKVDF 467 >gi|254822998|ref|ZP_05227999.1| rubredoxin [Mycobacterium intracellulare ATCC 13950] Length=59 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 40/51 (79%), Positives = 42/51 (83%), Gaps = 0/51 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFE 51 M AYRCP CDY+YDEA G REGFP GT + IPDDWCCPDCAVREKVDFE Sbjct 1 MTAYRCPGCDYIYDEAKGAPREGFPPGTPFSDIPDDWCCPDCAVREKVDFE 51 >gi|226304236|ref|YP_002764194.1| rubredoxin [Rhodococcus erythropolis PR4] gi|226183351|dbj|BAH31455.1| rubredoxin [Rhodococcus erythropolis PR4] Length=56 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 37/54 (69%), Positives = 40/54 (75%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M AY CP+CDY Y E+ G AREGFP GT W IPDDWCCPDC VREKVDF + Sbjct 1 MNAYICPICDYTYTESTGAAREGFPPGTAWSSIPDDWCCPDCGVREKVDFTLVA 54 >gi|108798305|ref|YP_638502.1| rubredoxin-type Fe(Cys)4 protein [Mycobacterium sp. MCS] gi|119867401|ref|YP_937353.1| rubredoxin-type Fe(Cys)4 protein [Mycobacterium sp. KMS] gi|108768724|gb|ABG07446.1| Rubredoxin-type Fe(Cys)4 protein [Mycobacterium sp. MCS] gi|119693490|gb|ABL90563.1| Rubredoxin-type Fe(Cys)4 protein [Mycobacterium sp. KMS] Length=53 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/53 (78%), Positives = 43/53 (82%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 M AYRCP CDYVYDEA G REGFP GT WD IP++W CPDCAVREKVDFE I Sbjct 1 MTAYRCPGCDYVYDEAKGAPREGFPPGTPWDDIPEEWGCPDCAVREKVDFEAI 53 >gi|226361672|ref|YP_002779450.1| rubredoxin [Rhodococcus opacus B4] gi|226240157|dbj|BAH50505.1| rubredoxin [Rhodococcus opacus B4] Length=55 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 39/52 (75%), Positives = 44/52 (85%), Gaps = 0/52 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEK 52 MAAY+CPVCDYVYDEA+G REGFPAGT W +P+DW CPDC VREK+DFE Sbjct 1 MAAYQCPVCDYVYDEASGAPREGFPAGTPWADVPEDWPCPDCGVREKIDFET 52 >gi|333992639|ref|YP_004525253.1| rubredoxin [Mycobacterium sp. JDM601] gi|333488607|gb|AEF37999.1| rubredoxin RubA [Mycobacterium sp. JDM601] Length=57 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 40/54 (75%), Positives = 42/54 (78%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 MA Y CP C YVYDE G REGFPAGT W QIPDDW CPDCAVREK+DFE +G Sbjct 1 MAGYGCPGCGYVYDEGVGAPREGFPAGTAWAQIPDDWTCPDCAVREKLDFEPMG 54 >gi|54649961|dbj|BAD67021.1| rubredoxin 3 [Gordonia sp. TF6] Length=56 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 38/54 (71%), Positives = 42/54 (78%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M+ +RCPVCDYVYDEA G REGFP GT W IPDDW CPDC VREK+DFE + Sbjct 1 MSTFRCPVCDYVYDEAAGAPREGFPPGTAWATIPDDWPCPDCGVREKIDFEGVA 54 >gi|229494405|ref|ZP_04388168.1| rubredoxin [Rhodococcus erythropolis SK121] gi|229318767|gb|EEN84625.1| rubredoxin [Rhodococcus erythropolis SK121] Length=56 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 37/53 (70%), Positives = 40/53 (76%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 M AY CP+CDY Y E+ G AREGFP GT W IPDDWCCPDC VREKVDF + Sbjct 1 MNAYICPICDYTYTESTGAAREGFPPGTLWSSIPDDWCCPDCGVREKVDFTLV 53 >gi|15420770|gb|AAK97449.1|AF388181_2 rubredoxin 1 [Rhodococcus sp. Q15] Length=56 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 37/54 (69%), Positives = 40/54 (75%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 M AY CP+CDY Y E+ G AREGFP GT W IPDDWCCPDC VREKVDF + Sbjct 1 MNAYICPICDYTYTESTGAAREGFPPGTPWSSIPDDWCCPDCGVREKVDFTLVA 54 >gi|13750741|emb|CAC37042.1| rubredoxin 1 [Rhodococcus erythropolis] Length=56 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 37/53 (70%), Positives = 40/53 (76%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 M AY CP+CDY Y E+ G AREGFP GT W IPDDWCCPDC VREKVDF + Sbjct 1 MNAYICPICDYTYTESTGAAREGFPPGTPWSSIPDDWCCPDCGVREKVDFTLV 53 >gi|226349673|ref|YP_002776787.1| rubredoxin [Rhodococcus opacus B4] gi|226245588|dbj|BAH55935.1| rubredoxin [Rhodococcus opacus B4] Length=61 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 38/53 (72%), Positives = 40/53 (76%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 MA YRCPVCDYVYDE G REGFPA T W IP+ WCCPDC VREKVDF + Sbjct 1 MARYRCPVCDYVYDERTGAPREGFPAATRWSAIPESWCCPDCGVREKVDFAPV 53 >gi|326332420|ref|ZP_08198697.1| alkane-1 monooxygenase [Nocardioidaceae bacterium Broad-1] gi|325949788|gb|EGD41851.1| alkane-1 monooxygenase [Nocardioidaceae bacterium Broad-1] Length=471 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 35/50 (70%), Positives = 38/50 (76%), Gaps = 0/50 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 +AA RCP C YVY+ A G+ EGF AGT W IPDDWCCPDC VREKVDF Sbjct 414 VAAGRCPGCGYVYEVAVGNELEGFAAGTAWRDIPDDWCCPDCGVREKVDF 463 >gi|296393193|ref|YP_003658077.1| rubredoxin-type Fe(Cys)4 protein [Segniliparus rotundus DSM 44985] gi|296180340|gb|ADG97246.1| Rubredoxin-type Fe(Cys)4 protein [Segniliparus rotundus DSM 44985] Length=59 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 36/55 (66%), Positives = 43/55 (79%), Gaps = 0/55 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 55 M+AYRCPVC+YVYDE+ G REGFP GT W ++PD W CPDC VREK+DFE + Sbjct 1 MSAYRCPVCEYVYDESVGAPREGFPPGTAWSEVPDVWPCPDCGVREKIDFEALSS 55 >gi|254776650|ref|ZP_05218166.1| rubredoxin [Mycobacterium avium subsp. avium ATCC 25291] Length=57 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 40/55 (73%), Positives = 43/55 (79%), Gaps = 0/55 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIGG 55 M YRCP CDY+YDEA G REGFPAGT + I DDWCCPDCAVREKVDFE + G Sbjct 1 MTRYRCPGCDYIYDEAKGAPREGFPAGTPFADISDDWCCPDCAVREKVDFENLIG 55 >gi|325001295|ref|ZP_08122407.1| alkane 1-monooxygenase [Pseudonocardia sp. P1] Length=471 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 33/50 (66%), Positives = 36/50 (72%), Gaps = 0/50 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 + A RCP C Y Y+ A G EGFPAGT W +IPDDW CPDC VREKVDF Sbjct 414 VTAARCPGCGYTYEVAAGHESEGFPAGTAWSEIPDDWTCPDCGVREKVDF 463 >gi|296140443|ref|YP_003647686.1| Rubredoxin-type Fe(Cys)4 protein [Tsukamurella paurometabola DSM 20162] gi|296028577|gb|ADG79347.1| Rubredoxin-type Fe(Cys)4 protein [Tsukamurella paurometabola DSM 20162] Length=53 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/53 (68%), Positives = 43/53 (82%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 M+A++CPVCDYVYDE G REG+PAGT W IPDDW CPDC VR+K+DFE + Sbjct 1 MSAFQCPVCDYVYDETTGAPREGWPAGTAWADIPDDWNCPDCGVRDKIDFEPV 53 >gi|120553376|ref|YP_957727.1| rubredoxin-type Fe(Cys)4 protein [Marinobacter aquaeolei VT8] gi|120323225|gb|ABM17540.1| Rubredoxin-type Fe(Cys)4 protein [Marinobacter aquaeolei VT8] Length=172 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 36/50 (72%), Positives = 41/50 (82%), Gaps = 0/50 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 MA Y+CP C YVYDE GD EGFPAGT W++IP+DW CPDCAVR+KVDF Sbjct 1 MAKYQCPDCGYVYDEVVGDPHEGFPAGTTWEKIPEDWSCPDCAVRDKVDF 50 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/42 (60%), Positives = 31/42 (74%), Gaps = 0/42 (0%) Query 6 CPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREK 47 C C ++YDEA GD EGFPAGT ++ IPDDWCCPDC ++ Sbjct 124 CITCGHIYDEALGDEAEGFPAGTRFEDIPDDWCCPDCGATKE 165 >gi|342861454|ref|ZP_08718101.1| rubredoxin [Mycobacterium colombiense CECT 3035] gi|342130943|gb|EGT84232.1| rubredoxin [Mycobacterium colombiense CECT 3035] Length=59 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 37/53 (70%), Positives = 41/53 (78%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 M+AYRCP CDY YDE G REGFPAGT + IP+DWCCPDCAV EK DF +I Sbjct 1 MSAYRCPGCDYTYDETKGAPREGFPAGTPFADIPEDWCCPDCAVLEKADFTQI 53 >gi|13591776|gb|AAK31348.1|AF350429_1 alkane hydroxylase-rubredoxin [Nocardioides sp. CF8] Length=483 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 33/48 (69%), Positives = 36/48 (75%), Gaps = 0/48 (0%) Query 3 AYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 A RCP C YVY+ A+GD REGF AGT W IPD W CPDC VR+KVDF Sbjct 424 AARCPGCGYVYEVASGDEREGFAAGTAWADIPDSWFCPDCGVRDKVDF 471 >gi|284047174|ref|YP_003397514.1| Rubredoxin-type Fe(Cys)4 protein [Conexibacter woesei DSM 14684] gi|283951395|gb|ADB54139.1| Rubredoxin-type Fe(Cys)4 protein [Conexibacter woesei DSM 14684] Length=54 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 36/51 (71%), Positives = 41/51 (81%), Gaps = 0/51 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFE 51 M+A+RCP C YVYDEA G REGFP GT W ++PDDW CPDC VR+KVDFE Sbjct 1 MSAFRCPGCGYVYDEAAGHPREGFPPGTPWSEVPDDWACPDCGVRDKVDFE 51 >gi|120553545|ref|YP_957896.1| rubredoxin-type Fe(Cys)4 protein [Marinobacter aquaeolei VT8] gi|120323394|gb|ABM17709.1| Rubredoxin-type Fe(Cys)4 protein [Marinobacter aquaeolei VT8] Length=172 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 35/50 (70%), Positives = 41/50 (82%), Gaps = 0/50 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDF 50 MA ++CP C YVYDE GD EGFPAGT W++IP+DW CPDCAVR+KVDF Sbjct 1 MAKHQCPDCGYVYDEVVGDPHEGFPAGTTWEKIPEDWSCPDCAVRDKVDF 50 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/42 (60%), Positives = 31/42 (74%), Gaps = 0/42 (0%) Query 6 CPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREK 47 C C ++YDEA GD EGFPAGT ++ IPDDWCCPDC ++ Sbjct 124 CITCGHIYDEALGDEAEGFPAGTRFEDIPDDWCCPDCGATKE 165 >gi|146305479|ref|YP_001185944.1| rubredoxin-type Fe(Cys)4 protein [Pseudomonas mendocina ymp] gi|145573680|gb|ABP83212.1| Rubredoxin-type Fe(Cys)4 protein [Pseudomonas mendocina ymp] Length=177 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 34/53 (65%), Positives = 42/53 (80%), Gaps = 0/53 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKI 53 MA+Y+CP C+YVYDE+ G+ EGF GT W IP+DWCCPDCAVR+K+DF I Sbjct 5 MASYKCPDCNYVYDESAGNVHEGFSPGTPWHLIPEDWCCPDCAVRDKLDFMLI 57 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/42 (55%), Positives = 29/42 (70%), Gaps = 0/42 (0%) Query 6 CPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREK 47 C C ++YDEA GD EGF GT ++ IPDDWCCPDC ++ Sbjct 128 CITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKE 169 >gi|167621705|ref|YP_001672213.1| rubredoxin-type Fe(Cys)4 protein [Caulobacter sp. K31] gi|167351828|gb|ABZ74554.1| Rubredoxin-type Fe(Cys)4 protein [Caulobacter sp. K31] Length=72 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 35/54 (65%), Positives = 41/54 (76%), Gaps = 0/54 (0%) Query 1 MAAYRCPVCDYVYDEANGDAREGFPAGTGWDQIPDDWCCPDCAVREKVDFEKIG 54 MA Y+CP C YVYDE G+A EGFP T W QIP+DW CPDCAVR+K+DF +G Sbjct 1 MARYQCPDCSYVYDEVRGEAHEGFPPNTSWAQIPEDWACPDCAVRDKLDFIPLG 54 Lambda K H 0.322 0.144 0.526 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129422029068 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40