BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3260c
Length=89
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842849|ref|NP_337886.1| WhiB-related protein [Mycobacterium... 185 2e-45
gi|254365883|ref|ZP_04981928.1| transcriptional regulatory prote... 185 2e-45
gi|167967911|ref|ZP_02550188.1| transcriptional regulatory prote... 182 1e-44
gi|15610396|ref|NP_217777.1| transcriptional regulatory protein ... 182 2e-44
gi|340628238|ref|YP_004746690.1| putative transcriptional regula... 179 9e-44
gi|342861463|ref|ZP_08718110.1| WhiB2 [Mycobacterium colombiense... 161 3e-38
gi|41409470|ref|NP_962306.1| WhiB2 [Mycobacterium avium subsp. p... 161 4e-38
gi|15827326|ref|NP_301589.1| transcriptional regulator [Mycobact... 161 4e-38
gi|118465072|ref|YP_883364.1| transcription factor WhiB [Mycobac... 160 6e-38
gi|296168945|ref|ZP_06850614.1| transcription factor WhiB [Mycob... 160 6e-38
gi|254776659|ref|ZP_05218175.1| WhiB2 [Mycobacterium avium subsp... 160 6e-38
gi|254821368|ref|ZP_05226369.1| WhiB2 [Mycobacterium intracellul... 160 8e-38
gi|183981304|ref|YP_001849595.1| transcriptional regulatory prot... 157 5e-37
gi|118618075|ref|YP_906407.1| transcriptional regulatory protein... 157 7e-37
gi|240172510|ref|ZP_04751169.1| transcriptional regulatory prote... 149 1e-34
gi|296138911|ref|YP_003646154.1| transcription factor WhiB [Tsuk... 143 7e-33
gi|108798296|ref|YP_638493.1| transcription factor WhiB [Mycobac... 143 9e-33
gi|229489335|ref|ZP_04383198.1| transcription factor WhiB [Rhodo... 142 1e-32
gi|312140689|ref|YP_004008025.1| whib-like transcriptional regul... 141 2e-32
gi|111023276|ref|YP_706248.1| transcriptional regulator [Rhodoco... 141 3e-32
gi|226305641|ref|YP_002765601.1| WhiB family regulatory protein ... 141 4e-32
gi|145225307|ref|YP_001135985.1| transcription factor WhiB [Myco... 140 4e-32
gi|118472139|ref|YP_886201.1| transcription factor WhiB [Mycobac... 140 5e-32
gi|169630686|ref|YP_001704335.1| WhiB family transcriptional reg... 140 7e-32
gi|54026595|ref|YP_120837.1| putative transcriptional regulator ... 140 8e-32
gi|333991649|ref|YP_004524263.1| transcriptional regulator [Myco... 139 1e-31
gi|120402734|ref|YP_952563.1| transcription factor WhiB [Mycobac... 139 2e-31
gi|326381469|ref|ZP_08203163.1| transcription factor WhiB [Gordo... 138 2e-31
gi|343926917|ref|ZP_08766410.1| putative WhiB family regulatory ... 138 3e-31
gi|333921463|ref|YP_004495044.1| putative transcriptional regula... 137 4e-31
gi|262203190|ref|YP_003274398.1| transcription factor WhiB [Gord... 137 8e-31
gi|226365784|ref|YP_002783567.1| WhiB family regulatory protein ... 136 9e-31
gi|254391683|ref|ZP_05006881.1| sporulation regulatory protein [... 132 1e-29
gi|302534806|ref|ZP_07287148.1| whiB-Stv [Streptomyces sp. C] >g... 132 1e-29
gi|291453718|ref|ZP_06593108.1| WhiB-family transcriptional regu... 132 1e-29
gi|319948500|ref|ZP_08022633.1| WhiB-like transcriptional regula... 132 2e-29
gi|295395826|ref|ZP_06806014.1| whiB-Stv [Brevibacterium mcbrell... 131 3e-29
gi|302544889|ref|ZP_07297231.1| transcription factor WhiB family... 131 3e-29
gi|295836960|ref|ZP_06823893.1| transcription factor WhiB family... 131 4e-29
gi|256380319|ref|YP_003103979.1| transcription factor WhiB [Acti... 131 4e-29
gi|345000074|ref|YP_004802928.1| transcription factor WhiB [Stre... 130 4e-29
gi|153525|gb|AAA71950.1| transcriptional-like factor [Streptomyc... 130 5e-29
gi|182438296|ref|YP_001826015.1| WhiB family transcriptional reg... 130 9e-29
gi|29831585|ref|NP_826219.1| WhiB-family transcriptional regulat... 129 1e-28
gi|302560311|ref|ZP_07312653.1| transcription factor WhiB family... 129 1e-28
gi|328882823|emb|CCA56062.1| Sporulation regulatory protein WhiB... 129 1e-28
gi|291439251|ref|ZP_06578641.1| regulatory protein [Streptomyces... 129 1e-28
gi|297200126|ref|ZP_06917523.1| sporulation regulatory protein [... 129 1e-28
gi|21221477|ref|NP_627256.1| sporulation regulatory protein [Str... 129 1e-28
gi|320010440|gb|ADW05290.1| transcription factor WhiB [Streptomy... 129 1e-28
>gi|15842849|ref|NP_337886.1| WhiB-related protein [Mycobacterium tuberculosis CDC1551]
gi|148824462|ref|YP_001289216.1| transcriptional regulatory protein whib-like whiB2 [Mycobacterium
tuberculosis F11]
gi|253800302|ref|YP_003033303.1| transcriptional regulator whib-like whiB2 [Mycobacterium tuberculosis
KZN 1435]
19 more sequence titles
Length=123
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%), Gaps = 0/89 (0%)
Query 1 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 60
LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL
Sbjct 35 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 94
Query 61 EYALAHDERFGIWGGLSERERRRLKRGII 89
EYALAHDERFGIWGGLSERERRRLKRGII
Sbjct 95 EYALAHDERFGIWGGLSERERRRLKRGII 123
>gi|254365883|ref|ZP_04981928.1| transcriptional regulatory protein whib-like whiB2 [Mycobacterium
tuberculosis str. Haarlem]
gi|254552362|ref|ZP_05142809.1| transcriptional regulator whib-like whiB2 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|308406103|ref|ZP_07495134.2| transcriptional regulator whib-like whiB2 [Mycobacterium tuberculosis
SUMu012]
gi|134151396|gb|EBA43441.1| transcriptional regulatory protein whib-like whiB2 [Mycobacterium
tuberculosis str. Haarlem]
gi|308364488|gb|EFP53339.1| transcriptional regulator whib-like whiB2 [Mycobacterium tuberculosis
SUMu012]
gi|323718129|gb|EGB27311.1| transcriptional regulator whib-like whiB2 [Mycobacterium tuberculosis
CDC1551A]
Length=114
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%), Gaps = 0/89 (0%)
Query 1 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 60
LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL
Sbjct 26 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 85
Query 61 EYALAHDERFGIWGGLSERERRRLKRGII 89
EYALAHDERFGIWGGLSERERRRLKRGII
Sbjct 86 EYALAHDERFGIWGGLSERERRRLKRGII 114
>gi|167967911|ref|ZP_02550188.1| transcriptional regulatory protein whib-like whiB2 [Mycobacterium
tuberculosis H37Ra]
gi|294993800|ref|ZP_06799491.1| transcriptional regulator whib-like whiB2 [Mycobacterium tuberculosis
210]
Length=95
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%), Gaps = 0/89 (0%)
Query 1 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 60
LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL
Sbjct 7 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 66
Query 61 EYALAHDERFGIWGGLSERERRRLKRGII 89
EYALAHDERFGIWGGLSERERRRLKRGII
Sbjct 67 EYALAHDERFGIWGGLSERERRRLKRGII 95
>gi|15610396|ref|NP_217777.1| transcriptional regulatory protein WHIB-like WHIB2 [Mycobacterium
tuberculosis H37Rv]
gi|31794440|ref|NP_856933.1| transcriptional regulatory protein WHIB-like WHIB2 [Mycobacterium
bovis AF2122/97]
gi|121639149|ref|YP_979373.1| putative transcriptional regulatory protein whiB-like whiB2 [Mycobacterium
bovis BCG str. Pasteur 1173P2]
46 more sequence titles
Length=89
Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/89 (99%), Positives = 89/89 (100%), Gaps = 0/89 (0%)
Query 1 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 60
+VPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL
Sbjct 1 MVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 60
Query 61 EYALAHDERFGIWGGLSERERRRLKRGII 89
EYALAHDERFGIWGGLSERERRRLKRGII
Sbjct 61 EYALAHDERFGIWGGLSERERRRLKRGII 89
>gi|340628238|ref|YP_004746690.1| putative transcriptional regulatory protein WHIB-like WHIB2 [Mycobacterium
canettii CIPT 140010059]
gi|340006428|emb|CCC45610.1| putative transcriptional regulatory protein WHIB-like WHIB2 [Mycobacterium
canettii CIPT 140010059]
Length=89
Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 87/89 (98%), Positives = 88/89 (99%), Gaps = 0/89 (0%)
Query 1 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 60
+VPEAPAPFEEPL PEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL
Sbjct 1 MVPEAPAPFEEPLSPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 60
Query 61 EYALAHDERFGIWGGLSERERRRLKRGII 89
EYALAHDERFGIWGGLSERERRRLKRGII
Sbjct 61 EYALAHDERFGIWGGLSERERRRLKRGII 89
>gi|342861463|ref|ZP_08718110.1| WhiB2 [Mycobacterium colombiense CECT 3035]
gi|342130952|gb|EGT84241.1| WhiB2 [Mycobacterium colombiense CECT 3035]
Length=112
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/90 (89%), Positives = 83/90 (93%), Gaps = 1/90 (1%)
Query 1 LVPEAPAPFE-EPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHEC 59
+VP+AP FE EPLP A DQWQDRALCAQTDPEAFFPEKGGSTREAKKIC+GCEVRHEC
Sbjct 23 VVPDAPTAFEPEPLPEPAADQWQDRALCAQTDPEAFFPEKGGSTREAKKICLGCEVRHEC 82
Query 60 LEYALAHDERFGIWGGLSERERRRLKRGII 89
LEYAL HDERFGIWGGLSERERRRLKRGII
Sbjct 83 LEYALEHDERFGIWGGLSERERRRLKRGII 112
>gi|41409470|ref|NP_962306.1| WhiB2 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41398301|gb|AAS05922.1| WhiB2 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459664|gb|EGO38599.1| Transcription factor WhiB [Mycobacterium avium subsp. paratuberculosis
S397]
Length=121
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/90 (88%), Positives = 82/90 (92%), Gaps = 1/90 (1%)
Query 1 LVPEAPAPFE-EPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHEC 59
+VP+AP FE EPLP DQWQDRALCAQTDPEAFFPEKGGSTREAKKIC+GCEVRHEC
Sbjct 32 VVPDAPVAFEPEPLPAPVADQWQDRALCAQTDPEAFFPEKGGSTREAKKICLGCEVRHEC 91
Query 60 LEYALAHDERFGIWGGLSERERRRLKRGII 89
LEYAL HDERFGIWGGLSERERRRLKRGII
Sbjct 92 LEYALEHDERFGIWGGLSERERRRLKRGII 121
>gi|15827326|ref|NP_301589.1| transcriptional regulator [Mycobacterium leprae TN]
gi|221229804|ref|YP_002503220.1| putative transcriptional regulator [Mycobacterium leprae Br4923]
gi|13092875|emb|CAC30269.1| putative transcriptional regulator [Mycobacterium leprae]
gi|219932911|emb|CAR70854.1| putative transcriptional regulator [Mycobacterium leprae Br4923]
Length=89
Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/89 (86%), Positives = 82/89 (93%), Gaps = 0/89 (0%)
Query 1 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 60
+VP+A FE PE++DQWQDRALCAQTDPEAFFPEKGGSTREAKKIC+GCEVRHECL
Sbjct 1 MVPKALVAFEVESEPESSDQWQDRALCAQTDPEAFFPEKGGSTREAKKICLGCEVRHECL 60
Query 61 EYALAHDERFGIWGGLSERERRRLKRGII 89
EYALAHDERFGIWGGLSERERRRLKRG+I
Sbjct 61 EYALAHDERFGIWGGLSERERRRLKRGVI 89
>gi|118465072|ref|YP_883364.1| transcription factor WhiB [Mycobacterium avium 104]
gi|118166359|gb|ABK67256.1| Transcription factor WhiB [Mycobacterium avium 104]
Length=112
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/90 (88%), Positives = 82/90 (92%), Gaps = 1/90 (1%)
Query 1 LVPEAPAPFE-EPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHEC 59
+VP+AP FE EPLP DQWQDRALCAQTDPEAFFPEKGGSTREAKKIC+GCEVRHEC
Sbjct 23 VVPDAPVAFEPEPLPAPVADQWQDRALCAQTDPEAFFPEKGGSTREAKKICLGCEVRHEC 82
Query 60 LEYALAHDERFGIWGGLSERERRRLKRGII 89
LEYAL HDERFGIWGGLSERERRRLKRGII
Sbjct 83 LEYALEHDERFGIWGGLSERERRRLKRGII 112
>gi|296168945|ref|ZP_06850614.1| transcription factor WhiB [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896414|gb|EFG76067.1| transcription factor WhiB [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=112
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/90 (87%), Positives = 82/90 (92%), Gaps = 1/90 (1%)
Query 1 LVPEAPAPFE-EPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHEC 59
+VP+AP FE EP+P DQWQDRALCAQTDPEAFFPEKGGSTREAKKIC+GCEVRHEC
Sbjct 23 VVPDAPVAFEPEPMPAPVADQWQDRALCAQTDPEAFFPEKGGSTREAKKICLGCEVRHEC 82
Query 60 LEYALAHDERFGIWGGLSERERRRLKRGII 89
LEYAL HDERFGIWGGLSERERRRLKRGII
Sbjct 83 LEYALEHDERFGIWGGLSERERRRLKRGII 112
>gi|254776659|ref|ZP_05218175.1| WhiB2 [Mycobacterium avium subsp. avium ATCC 25291]
Length=90
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/90 (88%), Positives = 82/90 (92%), Gaps = 1/90 (1%)
Query 1 LVPEAPAPFE-EPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHEC 59
+VP+AP FE EPLP DQWQDRALCAQTDPEAFFPEKGGSTREAKKIC+GCEVRHEC
Sbjct 1 MVPDAPVAFEPEPLPAPVADQWQDRALCAQTDPEAFFPEKGGSTREAKKICLGCEVRHEC 60
Query 60 LEYALAHDERFGIWGGLSERERRRLKRGII 89
LEYAL HDERFGIWGGLSERERRRLKRGII
Sbjct 61 LEYALEHDERFGIWGGLSERERRRLKRGII 90
>gi|254821368|ref|ZP_05226369.1| WhiB2 [Mycobacterium intracellulare ATCC 13950]
Length=90
Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/90 (88%), Positives = 82/90 (92%), Gaps = 1/90 (1%)
Query 1 LVPEAPAPFE-EPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHEC 59
+VP+AP FE EPLP DQWQDRALCAQTDPEAFFPEKGGSTREAKKIC+GCEVRHEC
Sbjct 1 MVPDAPGAFEPEPLPAPVADQWQDRALCAQTDPEAFFPEKGGSTREAKKICLGCEVRHEC 60
Query 60 LEYALAHDERFGIWGGLSERERRRLKRGII 89
LEYAL HDERFGIWGGLSERERRRLKRGII
Sbjct 61 LEYALEHDERFGIWGGLSERERRRLKRGII 90
>gi|183981304|ref|YP_001849595.1| transcriptional regulatory protein Whib-like WhiB2 [Mycobacterium
marinum M]
gi|183174630|gb|ACC39740.1| transcriptional regulatory protein Whib-like WhiB2 [Mycobacterium
marinum M]
Length=127
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/93 (88%), Positives = 83/93 (90%), Gaps = 4/93 (4%)
Query 1 LVPEAPAPFE-EPLPPEA---TDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVR 56
LVP+A A FE EPLP DQWQDRALCAQTDPEAFFPEKGGSTREAKKIC+GCEVR
Sbjct 35 LVPDASAAFEPEPLPEPVDPPADQWQDRALCAQTDPEAFFPEKGGSTREAKKICLGCEVR 94
Query 57 HECLEYALAHDERFGIWGGLSERERRRLKRGII 89
HECLEYALAHDERFGIWGGLSERERRRLKRGII
Sbjct 95 HECLEYALAHDERFGIWGGLSERERRRLKRGII 127
>gi|118618075|ref|YP_906407.1| transcriptional regulatory protein Whib-like WhiB2 [Mycobacterium
ulcerans Agy99]
gi|118570185|gb|ABL04936.1| transcriptional regulatory protein Whib-like WhiB2 [Mycobacterium
ulcerans Agy99]
Length=127
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/93 (88%), Positives = 83/93 (90%), Gaps = 4/93 (4%)
Query 1 LVPEAPAPFE-EPLPPEA---TDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVR 56
LVP+A A FE EPLP DQWQDRALCAQTDPEAFFPEKGGSTREAKKIC+GCEVR
Sbjct 35 LVPDASAAFEPEPLPEPVDPPADQWQDRALCAQTDPEAFFPEKGGSTREAKKICLGCEVR 94
Query 57 HECLEYALAHDERFGIWGGLSERERRRLKRGII 89
HECLEYALAHDERFGIWGGLSERERRRLKRGII
Sbjct 95 HECLEYALAHDERFGIWGGLSERERRRLKRGII 127
>gi|240172510|ref|ZP_04751169.1| transcriptional regulatory protein Whib-like WhiB2 [Mycobacterium
kansasii ATCC 12478]
Length=124
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/71 (99%), Positives = 71/71 (100%), Gaps = 0/71 (0%)
Query 19 DQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSE 78
DQWQDRALCAQTDPEAFFPEKGGSTREAKKIC+GCEVRHECLEYALAHDERFGIWGGLSE
Sbjct 54 DQWQDRALCAQTDPEAFFPEKGGSTREAKKICLGCEVRHECLEYALAHDERFGIWGGLSE 113
Query 79 RERRRLKRGII 89
RERRRLKRGII
Sbjct 114 RERRRLKRGII 124
>gi|296138911|ref|YP_003646154.1| transcription factor WhiB [Tsukamurella paurometabola DSM 20162]
gi|296027045|gb|ADG77815.1| transcription factor WhiB [Tsukamurella paurometabola DSM 20162]
Length=108
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 71/85 (84%), Positives = 75/85 (89%), Gaps = 1/85 (1%)
Query 5 APAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYAL 64
P FEE L DQWQDRALCAQTDPEAFFPEKGGSTREAK+IC+GCEVR+ECLEYAL
Sbjct 25 VPTGFEE-LYEAIEDQWQDRALCAQTDPEAFFPEKGGSTREAKRICLGCEVRNECLEYAL 83
Query 65 AHDERFGIWGGLSERERRRLKRGII 89
A DERFGIWGGLSERERR+LKRGII
Sbjct 84 AKDERFGIWGGLSERERRKLKRGII 108
>gi|108798296|ref|YP_638493.1| transcription factor WhiB [Mycobacterium sp. MCS]
gi|119867392|ref|YP_937344.1| transcription factor WhiB [Mycobacterium sp. KMS]
gi|126433963|ref|YP_001069654.1| transcription factor WhiB [Mycobacterium sp. JLS]
gi|108768715|gb|ABG07437.1| transcription factor WhiB [Mycobacterium sp. MCS]
gi|119693481|gb|ABL90554.1| transcription factor WhiB [Mycobacterium sp. KMS]
gi|126233763|gb|ABN97163.1| transcription factor WhiB [Mycobacterium sp. JLS]
Length=129
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/76 (89%), Positives = 72/76 (95%), Gaps = 0/76 (0%)
Query 14 PPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIW 73
P +A D WQ+RALCAQTDPEAFFPEKGGSTREAK+ICMGCEV+ ECL+YALAHDERFGIW
Sbjct 54 PEDADDLWQERALCAQTDPEAFFPEKGGSTREAKRICMGCEVKDECLDYALAHDERFGIW 113
Query 74 GGLSERERRRLKRGII 89
GGLSERERRRLKRGII
Sbjct 114 GGLSERERRRLKRGII 129
>gi|229489335|ref|ZP_04383198.1| transcription factor WhiB [Rhodococcus erythropolis SK121]
gi|229323432|gb|EEN89190.1| transcription factor WhiB [Rhodococcus erythropolis SK121]
Length=130
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/79 (87%), Positives = 72/79 (92%), Gaps = 0/79 (0%)
Query 11 EPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERF 70
E L DQWQ+RALCAQTDPEAFFPEKGGSTREAK+IC+GCEVR ECLEYALA+DERF
Sbjct 52 EELFDTIEDQWQERALCAQTDPEAFFPEKGGSTREAKRICLGCEVRDECLEYALANDERF 111
Query 71 GIWGGLSERERRRLKRGII 89
GIWGGLSERERRRLKRGII
Sbjct 112 GIWGGLSERERRRLKRGII 130
>gi|312140689|ref|YP_004008025.1| whib-like transcriptional regulator [Rhodococcus equi 103S]
gi|325675681|ref|ZP_08155365.1| transcription regulator WhiB [Rhodococcus equi ATCC 33707]
gi|311890028|emb|CBH49346.1| WhiB-like transcriptional regulator [Rhodococcus equi 103S]
gi|325553652|gb|EGD23330.1| transcription regulator WhiB [Rhodococcus equi ATCC 33707]
Length=134
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/73 (92%), Positives = 71/73 (98%), Gaps = 0/73 (0%)
Query 17 ATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGL 76
A +QWQDRALCAQTDPEAFFPEKGGSTREAK+IC+GCEVR ECLEYALA+DERFGIWGGL
Sbjct 62 AEEQWQDRALCAQTDPEAFFPEKGGSTREAKRICLGCEVRGECLEYALANDERFGIWGGL 121
Query 77 SERERRRLKRGII 89
SERERRRLKRGII
Sbjct 122 SERERRRLKRGII 134
>gi|111023276|ref|YP_706248.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110822806|gb|ABG98090.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length=155
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/71 (91%), Positives = 70/71 (99%), Gaps = 0/71 (0%)
Query 19 DQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSE 78
DQWQ+RALCAQTDPEAFFPEKGGSTREAK+IC+GCEVR ECL+YALA+DERFGIWGGLSE
Sbjct 85 DQWQERALCAQTDPEAFFPEKGGSTREAKRICLGCEVRDECLDYALANDERFGIWGGLSE 144
Query 79 RERRRLKRGII 89
RERRRLKRGI+
Sbjct 145 RERRRLKRGIV 155
>gi|226305641|ref|YP_002765601.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
gi|226184758|dbj|BAH32862.1| WhiB family regulatory protein [Rhodococcus erythropolis PR4]
Length=92
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/79 (87%), Positives = 72/79 (92%), Gaps = 0/79 (0%)
Query 11 EPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERF 70
E L DQWQ+RALCAQTDPEAFFPEKGGSTREAK+IC+GCEVR ECLEYALA+DERF
Sbjct 14 EELFDTIEDQWQERALCAQTDPEAFFPEKGGSTREAKRICLGCEVRDECLEYALANDERF 73
Query 71 GIWGGLSERERRRLKRGII 89
GIWGGLSERERRRLKRGII
Sbjct 74 GIWGGLSERERRRLKRGII 92
>gi|145225307|ref|YP_001135985.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK]
gi|315445605|ref|YP_004078484.1| transcription factor WhiB [Mycobacterium sp. Spyr1]
gi|145217793|gb|ABP47197.1| transcription factor WhiB [Mycobacterium gilvum PYR-GCK]
gi|315263908|gb|ADU00650.1| transcription factor WhiB [Mycobacterium sp. Spyr1]
Length=133
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/89 (78%), Positives = 75/89 (85%), Gaps = 0/89 (0%)
Query 1 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 60
LVPE F + DQWQ+RALCAQTDPEAFFPEKGGSTREAK+IC+GCEV+ CL
Sbjct 45 LVPERIDSFGDDSGVLDEDQWQERALCAQTDPEAFFPEKGGSTREAKRICLGCEVKDACL 104
Query 61 EYALAHDERFGIWGGLSERERRRLKRGII 89
EYALA+DERFGIWGGLSERERRRLKRGII
Sbjct 105 EYALANDERFGIWGGLSERERRRLKRGII 133
>gi|118472139|ref|YP_886201.1| transcription factor WhiB [Mycobacterium smegmatis str. MC2 155]
gi|5690422|gb|AAD47079.1|AF164439_1 WhmD [Mycobacterium smegmatis]
gi|118173426|gb|ABK74322.1| Transcription factor WhiB [Mycobacterium smegmatis str. MC2 155]
Length=129
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/78 (89%), Positives = 72/78 (93%), Gaps = 1/78 (1%)
Query 13 LPPEAT-DQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFG 71
+ PEA DQWQ+RALCAQTDPEAFFPEKGGSTREAK+IC GCEVR CLEYALAHDERFG
Sbjct 52 VAPEAEEDQWQERALCAQTDPEAFFPEKGGSTREAKRICQGCEVRDACLEYALAHDERFG 111
Query 72 IWGGLSERERRRLKRGII 89
IWGGLSERERRRLKRGII
Sbjct 112 IWGGLSERERRRLKRGII 129
>gi|169630686|ref|YP_001704335.1| WhiB family transcriptional regulator [Mycobacterium abscessus
ATCC 19977]
gi|169242653|emb|CAM63681.1| Putative transcriptional regulator, WhiB family [Mycobacterium
abscessus]
Length=118
Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/79 (84%), Positives = 72/79 (92%), Gaps = 0/79 (0%)
Query 11 EPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERF 70
+ L A DQWQ++ALCAQTDPEAFFPEKGGSTREAK+IC GCEV+ ECLEYALA+DERF
Sbjct 40 DALAAVADDQWQEKALCAQTDPEAFFPEKGGSTREAKRICQGCEVKDECLEYALANDERF 99
Query 71 GIWGGLSERERRRLKRGII 89
GIWGGLSERERRRLKRGII
Sbjct 100 GIWGGLSERERRRLKRGII 118
>gi|54026595|ref|YP_120837.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54018103|dbj|BAD59473.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=92
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 66/70 (95%), Positives = 69/70 (99%), Gaps = 0/70 (0%)
Query 19 DQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSE 78
+QWQ+RALCAQTDPEAFFPEKGGSTREAK+ICMGCEVR ECLEYALAHDERFGIWGGLSE
Sbjct 22 EQWQERALCAQTDPEAFFPEKGGSTREAKRICMGCEVRDECLEYALAHDERFGIWGGLSE 81
Query 79 RERRRLKRGI 88
RERRRLKRGI
Sbjct 82 RERRRLKRGI 91
>gi|333991649|ref|YP_004524263.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333487617|gb|AEF37009.1| transcriptional regulatory protein Whib-like WhiB2 [Mycobacterium
sp. JDM601]
Length=128
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/83 (86%), Positives = 73/83 (88%), Gaps = 4/83 (4%)
Query 8 PFEEPLPPEATD-QWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAH 66
PF+ P AT+ QWQDRALCAQTDPEAFFPEKGGSTREAKKIC C VR ECLEYALAH
Sbjct 49 PFD---PASATNEQWQDRALCAQTDPEAFFPEKGGSTREAKKICQRCSVRSECLEYALAH 105
Query 67 DERFGIWGGLSERERRRLKRGII 89
DERFGIWGGLSERERRRLKRGII
Sbjct 106 DERFGIWGGLSERERRRLKRGII 128
>gi|120402734|ref|YP_952563.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
gi|119955552|gb|ABM12557.1| transcription factor WhiB [Mycobacterium vanbaalenii PYR-1]
Length=133
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/89 (77%), Positives = 75/89 (85%), Gaps = 0/89 (0%)
Query 1 LVPEAPAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECL 60
LVP+ F + DQWQ+RALCAQTDPEAFFPEKGGSTREAK+IC+GCEV+ CL
Sbjct 45 LVPDHIEQFGDDSGIPDEDQWQERALCAQTDPEAFFPEKGGSTREAKRICLGCEVKDACL 104
Query 61 EYALAHDERFGIWGGLSERERRRLKRGII 89
EYALA+DERFGIWGGLSERERRRLKRGII
Sbjct 105 EYALANDERFGIWGGLSERERRRLKRGII 133
>gi|326381469|ref|ZP_08203163.1| transcription factor WhiB [Gordonia neofelifaecis NRRL B-59395]
gi|326199716|gb|EGD56896.1| transcription factor WhiB [Gordonia neofelifaecis NRRL B-59395]
Length=91
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/85 (82%), Positives = 73/85 (86%), Gaps = 1/85 (1%)
Query 5 APAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYAL 64
P FEE L +QWQDRALCAQTDPEAFFPEKGGSTREAK+IC GCEV+ ECLEYAL
Sbjct 8 VPNDFEE-LFDAVEEQWQDRALCAQTDPEAFFPEKGGSTREAKRICQGCEVKAECLEYAL 66
Query 65 AHDERFGIWGGLSERERRRLKRGII 89
+DERFGIWGGLSERERRRLKRGII
Sbjct 67 HNDERFGIWGGLSERERRRLKRGII 91
>gi|343926917|ref|ZP_08766410.1| putative WhiB family regulatory protein [Gordonia alkanivorans
NBRC 16433]
gi|343763277|dbj|GAA13336.1| putative WhiB family regulatory protein [Gordonia alkanivorans
NBRC 16433]
Length=166
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/85 (79%), Positives = 73/85 (86%), Gaps = 1/85 (1%)
Query 5 APAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYAL 64
P F++ L +QWQDRALCAQTDPEAFFPEKGGSTREAK+IC GCEV+ ECLEYAL
Sbjct 83 VPNDFDD-LFDSVEEQWQDRALCAQTDPEAFFPEKGGSTREAKRICQGCEVKAECLEYAL 141
Query 65 AHDERFGIWGGLSERERRRLKRGII 89
+DERFGIWGGLSERERRRLKRGII
Sbjct 142 HNDERFGIWGGLSERERRRLKRGII 166
>gi|333921463|ref|YP_004495044.1| putative transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483685|gb|AEF42245.1| Possible transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
Length=85
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/71 (91%), Positives = 70/71 (99%), Gaps = 0/71 (0%)
Query 19 DQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSE 78
++WQDRALCAQTDPEAFFPEKGGSTREAK+IC+GCEVR ECLEYALA+DERFGIWGGLSE
Sbjct 15 EEWQDRALCAQTDPEAFFPEKGGSTREAKRICLGCEVRDECLEYALANDERFGIWGGLSE 74
Query 79 RERRRLKRGII 89
RERRRLKRGI+
Sbjct 75 RERRRLKRGIV 85
>gi|262203190|ref|YP_003274398.1| transcription factor WhiB [Gordonia bronchialis DSM 43247]
gi|262086537|gb|ACY22505.1| transcription factor WhiB [Gordonia bronchialis DSM 43247]
Length=153
Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/85 (79%), Positives = 74/85 (88%), Gaps = 1/85 (1%)
Query 5 APAPFEEPLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYAL 64
P F++ L E +QWQ+RALCAQTDPEAFFPEKGGSTREAK+IC GCEV+ ECLEYAL
Sbjct 70 VPNEFDD-LFDEVEEQWQERALCAQTDPEAFFPEKGGSTREAKRICQGCEVKAECLEYAL 128
Query 65 AHDERFGIWGGLSERERRRLKRGII 89
+DERFGIWGGLSERERRRLKRGII
Sbjct 129 HNDERFGIWGGLSERERRRLKRGII 153
>gi|226365784|ref|YP_002783567.1| WhiB family regulatory protein [Rhodococcus opacus B4]
gi|226244274|dbj|BAH54622.1| WhiB family regulatory protein [Rhodococcus opacus B4]
Length=108
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 63/70 (90%), Positives = 69/70 (99%), Gaps = 0/70 (0%)
Query 19 DQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSE 78
DQWQ+RALCAQTDPEAFFPEKGGSTREAK+IC+GCEV+ ECL+YALA+DERFGIWGGLSE
Sbjct 38 DQWQERALCAQTDPEAFFPEKGGSTREAKRICLGCEVKDECLDYALANDERFGIWGGLSE 97
Query 79 RERRRLKRGI 88
RERRRLKRGI
Sbjct 98 RERRRLKRGI 107
>gi|254391683|ref|ZP_05006881.1| sporulation regulatory protein [Streptomyces clavuligerus ATCC
27064]
gi|294812948|ref|ZP_06771591.1| WhiB family transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
gi|326441499|ref|ZP_08216233.1| WhiB family transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
gi|197705368|gb|EDY51180.1| sporulation regulatory protein [Streptomyces clavuligerus ATCC
27064]
gi|294325547|gb|EFG07190.1| WhiB family transcriptional regulator [Streptomyces clavuligerus
ATCC 27064]
Length=87
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/83 (76%), Positives = 73/83 (88%), Gaps = 2/83 (2%)
Query 9 FEEPLPPEATDQ--WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAH 66
FE+ L +A D+ WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYALA+
Sbjct 5 FEQLLVEDADDEIGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRAECLEYALAN 64
Query 67 DERFGIWGGLSERERRRLKRGII 89
DERFGIWGGLSERERRRLK+ +
Sbjct 65 DERFGIWGGLSERERRRLKKAAV 87
>gi|302534806|ref|ZP_07287148.1| whiB-Stv [Streptomyces sp. C]
gi|302443701|gb|EFL15517.1| whiB-Stv [Streptomyces sp. C]
Length=87
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/83 (76%), Positives = 73/83 (88%), Gaps = 2/83 (2%)
Query 9 FEEPLPPEATDQ--WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAH 66
F+E L EA ++ WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYALA+
Sbjct 5 FQELLVEEADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALAN 64
Query 67 DERFGIWGGLSERERRRLKRGII 89
DERFGIWGGLSERERRRLK+ +
Sbjct 65 DERFGIWGGLSERERRRLKKAAV 87
>gi|291453718|ref|ZP_06593108.1| WhiB-family transcriptional regulator, WhiB protein [Streptomyces
albus J1074]
gi|291356667|gb|EFE83569.1| WhiB-family transcriptional regulator, WhiB protein [Streptomyces
albus J1074]
Length=87
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/83 (76%), Positives = 73/83 (88%), Gaps = 2/83 (2%)
Query 9 FEEPLPPEATDQ--WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAH 66
FE+ L EA ++ WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYALA+
Sbjct 5 FEQLLVEEADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALAN 64
Query 67 DERFGIWGGLSERERRRLKRGII 89
DERFGIWGGLSERERRRLK+ +
Sbjct 65 DERFGIWGGLSERERRRLKKAAV 87
>gi|319948500|ref|ZP_08022633.1| WhiB-like transcriptional regulator [Dietzia cinnamea P4]
gi|319437837|gb|EFV92824.1| WhiB-like transcriptional regulator [Dietzia cinnamea P4]
Length=103
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/71 (86%), Positives = 66/71 (93%), Gaps = 0/71 (0%)
Query 19 DQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSE 78
+ WQDRALCAQTDPEAFFPEKGGSTREAKKIC GCEV+ ECLEYALA+DERFGIWGGLSE
Sbjct 32 ESWQDRALCAQTDPEAFFPEKGGSTREAKKICTGCEVKAECLEYALANDERFGIWGGLSE 91
Query 79 RERRRLKRGII 89
RERRR+KR +
Sbjct 92 RERRRIKRDAV 102
>gi|295395826|ref|ZP_06806014.1| whiB-Stv [Brevibacterium mcbrellneri ATCC 49030]
gi|294971361|gb|EFG47248.1| whiB-Stv [Brevibacterium mcbrellneri ATCC 49030]
Length=144
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/97 (70%), Positives = 76/97 (79%), Gaps = 8/97 (8%)
Query 1 LVPEAPAPFEEPLPP------EATDQ--WQDRALCAQTDPEAFFPEKGGSTREAKKICMG 52
LVP + +P + P EA D WQD+ALCAQTDPEAFFPEKGGSTREAK++C
Sbjct 48 LVPISGSPSVASVSPLQLLLGEADDDVAWQDQALCAQTDPEAFFPEKGGSTREAKRVCAS 107
Query 53 CEVRHECLEYALAHDERFGIWGGLSERERRRLKRGII 89
CEVR ECLEYALA+DERFGIWGGLSERERRRLK+ I+
Sbjct 108 CEVRSECLEYALANDERFGIWGGLSERERRRLKKQIV 144
>gi|302544889|ref|ZP_07297231.1| transcription factor WhiB family protein [Streptomyces hygroscopicus
ATCC 53653]
gi|345015662|ref|YP_004818016.1| transcription factor WhiB [Streptomyces violaceusniger Tu 4113]
gi|47120|emb|CAA48659.1| whiB-Stv [Streptomyces griseocarneus]
gi|297157871|gb|ADI07583.1| WhiB family transcriptional regulator [Streptomyces bingchenggensis
BCW-1]
gi|302462507|gb|EFL25600.1| transcription factor WhiB family protein [Streptomyces himastatinicus
ATCC 53653]
gi|344042011|gb|AEM87736.1| transcription factor WhiB [Streptomyces violaceusniger Tu 4113]
Length=87
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/83 (75%), Positives = 73/83 (88%), Gaps = 2/83 (2%)
Query 9 FEEPLPPEATDQ--WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAH 66
F++ L EA ++ WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYALA+
Sbjct 5 FQQLLVEEADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALAN 64
Query 67 DERFGIWGGLSERERRRLKRGII 89
DERFGIWGGLSERERRRLK+ +
Sbjct 65 DERFGIWGGLSERERRRLKKAAV 87
>gi|295836960|ref|ZP_06823893.1| transcription factor WhiB family protein [Streptomyces sp. SPB74]
gi|302521398|ref|ZP_07273740.1| sporulation regulatory protein [Streptomyces sp. SPB78]
gi|318060809|ref|ZP_07979532.1| WhiB family transcriptional regulator [Streptomyces sp. SA3_actG]
gi|318078343|ref|ZP_07985675.1| WhiB family transcriptional regulator [Streptomyces sp. SA3_actF]
gi|333024953|ref|ZP_08453017.1| putative WhiB family transcriptional regulator [Streptomyces
sp. Tu6071]
gi|295826299|gb|EFG64777.1| transcription factor WhiB family protein [Streptomyces sp. SPB74]
gi|302430293|gb|EFL02109.1| sporulation regulatory protein [Streptomyces sp. SPB78]
gi|332744805|gb|EGJ75246.1| putative WhiB family transcriptional regulator [Streptomyces
sp. Tu6071]
Length=90
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/86 (74%), Positives = 72/86 (84%), Gaps = 5/86 (5%)
Query 9 FEEPLPPEATDQ-----WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYA 63
F+E L +A D WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYA
Sbjct 5 FQELLVGDALDAEEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYA 64
Query 64 LAHDERFGIWGGLSERERRRLKRGII 89
LA+DERFGIWGGLSERERRRLK+ +
Sbjct 65 LANDERFGIWGGLSERERRRLKKAAV 90
>gi|256380319|ref|YP_003103979.1| transcription factor WhiB [Actinosynnema mirum DSM 43827]
gi|255924622|gb|ACU40133.1| transcription factor WhiB [Actinosynnema mirum DSM 43827]
Length=102
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/75 (82%), Positives = 66/75 (88%), Gaps = 0/75 (0%)
Query 12 PLPPEATDQWQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFG 71
P WQ+RALCAQTDPEAFFPEKGGSTREAK+IC+GCEVR ECLEYALAHDERFG
Sbjct 25 SFDPADEQDWQERALCAQTDPEAFFPEKGGSTREAKRICLGCEVRSECLEYALAHDERFG 84
Query 72 IWGGLSERERRRLKR 86
IWGGLSERERR+LK+
Sbjct 85 IWGGLSERERRKLKK 99
>gi|345000074|ref|YP_004802928.1| transcription factor WhiB [Streptomyces sp. SirexAA-E]
gi|344315700|gb|AEN10388.1| transcription factor WhiB [Streptomyces sp. SirexAA-E]
Length=87
Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/83 (75%), Positives = 73/83 (88%), Gaps = 2/83 (2%)
Query 9 FEEPLPPEATDQ--WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAH 66
F++ L +A ++ WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYALA+
Sbjct 5 FQQLLVEDADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALAN 64
Query 67 DERFGIWGGLSERERRRLKRGII 89
DERFGIWGGLSERERRRLK+ I
Sbjct 65 DERFGIWGGLSERERRRLKKAAI 87
>gi|153525|gb|AAA71950.1| transcriptional-like factor [Streptomyces aureofaciens]
gi|349332|gb|AAC18891.1| transcription factor [Streptomyces aureofaciens]
Length=87
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/83 (75%), Positives = 72/83 (87%), Gaps = 2/83 (2%)
Query 9 FEEPLPPEATDQ--WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAH 66
F+E L EA ++ WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEY LA+
Sbjct 5 FQELLVEEADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYGLAN 64
Query 67 DERFGIWGGLSERERRRLKRGII 89
DERFGIWGGLSERERRRLK+ +
Sbjct 65 DERFGIWGGLSERERRRLKKAAV 87
>gi|182438296|ref|YP_001826015.1| WhiB family transcriptional regulator [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|239988187|ref|ZP_04708851.1| WhiB family transcriptional regulator [Streptomyces roseosporus
NRRL 11379]
gi|291445169|ref|ZP_06584559.1| whiB-Stv [Streptomyces roseosporus NRRL 15998]
gi|326778947|ref|ZP_08238212.1| transcription factor WhiB [Streptomyces cf. griseus XylebKG-1]
gi|178466812|dbj|BAG21332.1| putative WhiB-family transcriptional regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|291348116|gb|EFE75020.1| whiB-Stv [Streptomyces roseosporus NRRL 15998]
gi|326659280|gb|EGE44126.1| transcription factor WhiB [Streptomyces griseus XylebKG-1]
Length=87
Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/83 (74%), Positives = 73/83 (88%), Gaps = 2/83 (2%)
Query 9 FEEPLPPEATDQ--WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAH 66
F++ L +A ++ WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYAL++
Sbjct 5 FQQLLVEDADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALSN 64
Query 67 DERFGIWGGLSERERRRLKRGII 89
DERFGIWGGLSERERRRLK+ I
Sbjct 65 DERFGIWGGLSERERRRLKKAAI 87
>gi|29831585|ref|NP_826219.1| WhiB-family transcriptional regulator [Streptomyces avermitilis
MA-4680]
gi|29608701|dbj|BAC72754.1| putative WhiB-family transcriptional regulator, WhiB protein
[Streptomyces avermitilis MA-4680]
Length=87
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/69 (86%), Positives = 65/69 (95%), Gaps = 0/69 (0%)
Query 21 WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSERE 80
WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYALA+DERFGIWGGLSERE
Sbjct 19 WQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALANDERFGIWGGLSERE 78
Query 81 RRRLKRGII 89
RRRLK+ I
Sbjct 79 RRRLKKAAI 87
>gi|302560311|ref|ZP_07312653.1| transcription factor WhiB family protein [Streptomyces griseoflavus
Tu4000]
gi|302477929|gb|EFL41022.1| transcription factor WhiB family protein [Streptomyces griseoflavus
Tu4000]
Length=87
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/69 (86%), Positives = 65/69 (95%), Gaps = 0/69 (0%)
Query 21 WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSERE 80
WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYALA+DERFGIWGGLSERE
Sbjct 19 WQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALANDERFGIWGGLSERE 78
Query 81 RRRLKRGII 89
RRRLK+ I
Sbjct 79 RRRLKKAAI 87
>gi|328882823|emb|CCA56062.1| Sporulation regulatory protein WhiB [Streptomyces venezuelae
ATCC 10712]
Length=87
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/83 (74%), Positives = 72/83 (87%), Gaps = 2/83 (2%)
Query 9 FEEPLPPEATDQ--WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAH 66
F+E L +A ++ WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYAL +
Sbjct 5 FQELLVEDADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALQN 64
Query 67 DERFGIWGGLSERERRRLKRGII 89
DERFGIWGGLSERERRRLK+ +
Sbjct 65 DERFGIWGGLSERERRRLKKAAV 87
>gi|291439251|ref|ZP_06578641.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
gi|291342146|gb|EFE69102.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
Length=87
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/69 (85%), Positives = 65/69 (95%), Gaps = 0/69 (0%)
Query 21 WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSERE 80
WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYALA+DERFGIWGGLSERE
Sbjct 19 WQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALANDERFGIWGGLSERE 78
Query 81 RRRLKRGII 89
RRRLK+ +
Sbjct 79 RRRLKKAAV 87
>gi|297200126|ref|ZP_06917523.1| sporulation regulatory protein [Streptomyces sviceus ATCC 29083]
gi|302551856|ref|ZP_07304198.1| sporulation regulatory protein [Streptomyces viridochromogenes
DSM 40736]
gi|197713424|gb|EDY57458.1| sporulation regulatory protein [Streptomyces sviceus ATCC 29083]
gi|302469474|gb|EFL32567.1| sporulation regulatory protein [Streptomyces viridochromogenes
DSM 40736]
Length=87
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/69 (85%), Positives = 65/69 (95%), Gaps = 0/69 (0%)
Query 21 WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSERE 80
WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYALA+DERFGIWGGLSERE
Sbjct 19 WQERALCAQTDPESFFPEKGGSTREAKKVCLSCEVRSECLEYALANDERFGIWGGLSERE 78
Query 81 RRRLKRGII 89
RRRLK+ +
Sbjct 79 RRRLKKAAV 87
>gi|21221477|ref|NP_627256.1| sporulation regulatory protein [Streptomyces coelicolor A3(2)]
gi|289771232|ref|ZP_06530610.1| sporulation regulatory protein [Streptomyces lividans TK24]
gi|290959897|ref|YP_003491079.1| sporulation regulatory protein [Streptomyces scabiei 87.22]
9 more sequence titles
Length=87
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/69 (85%), Positives = 65/69 (95%), Gaps = 0/69 (0%)
Query 21 WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAHDERFGIWGGLSERE 80
WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYALA+DERFGIWGGLSERE
Sbjct 19 WQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALANDERFGIWGGLSERE 78
Query 81 RRRLKRGII 89
RRRLK+ +
Sbjct 79 RRRLKKAAV 87
>gi|320010440|gb|ADW05290.1| transcription factor WhiB [Streptomyces flavogriseus ATCC 33331]
Length=87
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/83 (74%), Positives = 72/83 (87%), Gaps = 2/83 (2%)
Query 9 FEEPLPPEATDQ--WQDRALCAQTDPEAFFPEKGGSTREAKKICMGCEVRHECLEYALAH 66
F++ L +A ++ WQ+RALCAQTDPE+FFPEKGGSTREAKK+C+ CEVR ECLEYAL +
Sbjct 5 FQQLLVDDADEELGWQERALCAQTDPESFFPEKGGSTREAKKVCLACEVRSECLEYALNN 64
Query 67 DERFGIWGGLSERERRRLKRGII 89
DERFGIWGGLSERERRRLK+ I
Sbjct 65 DERFGIWGGLSERERRRLKKAAI 87
Lambda K H
0.320 0.139 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129638988780
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40