BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3267 Length=498 Score E Sequences producing significant alignments: (Bits) Value gi|15610403|ref|NP_217784.1| hypothetical protein Rv3267 [Mycoba... 993 0.0 gi|15842857|ref|NP_337894.1| hypothetical protein MT3367 [Mycoba... 992 0.0 gi|289448956|ref|ZP_06438700.1| conserved hypothetical protein [... 989 0.0 gi|340628245|ref|YP_004746697.1| hypothetical protein MCAN_32861... 984 0.0 gi|298526743|ref|ZP_07014152.1| conserved hypothetical protein [... 981 0.0 gi|308370209|ref|ZP_07420655.2| hypothetical protein TMBG_01962 ... 893 0.0 gi|240172501|ref|ZP_04751160.1| hypothetical protein MkanA1_2451... 828 0.0 gi|296168937|ref|ZP_06850606.1| LytR family transcriptional regu... 827 0.0 gi|41409479|ref|NP_962315.1| hypothetical protein MAP3381 [Mycob... 819 0.0 gi|118466640|ref|YP_883373.1| cell envelope-related function tra... 815 0.0 gi|254821360|ref|ZP_05226361.1| cell envelope-related function t... 797 0.0 gi|342861471|ref|ZP_08718118.1| hypothetical protein MCOL_21401 ... 778 0.0 gi|15827317|ref|NP_301580.1| hypothetical protein ML0750 [Mycoba... 778 0.0 gi|183981296|ref|YP_001849587.1| hypothetical protein MMAR_1274 ... 771 0.0 gi|118618083|ref|YP_906415.1| hypothetical protein MUL_2613 [Myc... 769 0.0 gi|126433956|ref|YP_001069647.1| cell envelope-related transcrip... 689 0.0 gi|108798289|ref|YP_638486.1| cell envelope-related transcriptio... 688 0.0 gi|120402726|ref|YP_952555.1| cell envelope-related transcriptio... 687 0.0 gi|333991658|ref|YP_004524272.1| hypothetical protein JDM601_301... 684 0.0 gi|145225315|ref|YP_001135993.1| cell envelope-related transcrip... 674 0.0 gi|315445613|ref|YP_004078492.1| cell envelope-related transcrip... 668 0.0 gi|118470097|ref|YP_886195.1| LytR family transcriptional regula... 667 0.0 gi|169630694|ref|YP_001704343.1| hypothetical protein MAB_3614 [... 544 1e-152 gi|339296094|gb|AEJ48205.1| hypothetical protein CCDC5079_3015 [... 540 2e-151 gi|54026612|ref|YP_120854.1| putative transcriptional regulator ... 487 2e-135 gi|325675652|ref|ZP_08155336.1| LytR family transcriptional regu... 474 1e-131 gi|312140709|ref|YP_004008045.1| LytR family transcripiotnal reg... 474 2e-131 gi|229489555|ref|ZP_04383418.1| transcriptional regulator, LytR ... 457 2e-126 gi|226305633|ref|YP_002765593.1| LytR family regulatory protein ... 452 6e-125 gi|226365777|ref|YP_002783560.1| LytR family regulatory protein ... 452 9e-125 gi|111023267|ref|YP_706239.1| LytR family transcriptional regula... 449 4e-124 gi|343928005|ref|ZP_08767470.1| putative LytR family regulatory ... 439 5e-121 gi|262201793|ref|YP_003273001.1| cell envelope-like function tra... 439 7e-121 gi|213964851|ref|ZP_03393050.1| transcriptional regulator, LytR ... 427 2e-117 gi|336326286|ref|YP_004606252.1| LytR DNA-binding transcription ... 424 1e-116 gi|333921474|ref|YP_004495055.1| LytR family transcriptional reg... 421 1e-115 gi|334563549|ref|ZP_08516540.1| hypothetical protein CbovD2_0316... 420 4e-115 gi|260577926|ref|ZP_05845856.1| LytR family transcriptional regu... 418 1e-114 gi|68536736|ref|YP_251441.1| hypothetical protein jk1648 [Coryne... 417 2e-114 gi|326382031|ref|ZP_08203724.1| cell envelope-like function tran... 414 2e-113 gi|296138789|ref|YP_003646032.1| cell envelope-related transcrip... 411 1e-112 gi|172040148|ref|YP_001799862.1| LytR family transcriptional reg... 410 2e-112 gi|145294902|ref|YP_001137723.1| hypothetical protein cgR_0849 [... 405 6e-111 gi|340795145|ref|YP_004760608.1| LytR transcription regulator [C... 403 3e-110 gi|344043759|gb|EGV39447.1| hypothetical protein CgS9114_13311 [... 400 3e-109 gi|19551968|ref|NP_599970.1| transcriptional regulator [Coryneba... 400 4e-109 gi|317508994|ref|ZP_07966626.1| hypothetical protein HMPREF9336_... 396 5e-108 gi|339296095|gb|AEJ48206.1| hypothetical protein CCDC5079_3016 [... 395 1e-107 gi|38233287|ref|NP_939054.1| hypothetical protein DIP0680 [Coryn... 394 2e-107 gi|25027310|ref|NP_737364.1| hypothetical protein CE0754 [Coryne... 393 4e-107 >gi|15610403|ref|NP_217784.1| hypothetical protein Rv3267 [Mycobacterium tuberculosis H37Rv] gi|31794447|ref|NP_856940.1| hypothetical protein Mb3295 [Mycobacterium bovis AF2122/97] gi|121639156|ref|YP_979380.1| hypothetical protein BCG_3296 [Mycobacterium bovis BCG str. Pasteur 1173P2] 41 more sequence titles Length=498 Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/498 (99%), Positives = 498/498 (100%), Gaps = 0/498 (0%) Query 1 VMSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI 60 +MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI Sbjct 1 MMSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI 60 Query 61 DILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS 120 DILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS Sbjct 61 DILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS 120 Query 121 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT 180 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT Sbjct 121 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT 180 Query 181 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD 240 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD Sbjct 181 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD 240 Query 241 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQ 300 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQ Sbjct 241 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQ 300 Query 301 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT 360 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT Sbjct 301 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT 360 Query 361 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ 420 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ Sbjct 361 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ 420 Query 421 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTT 480 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTT Sbjct 421 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTT 480 Query 481 PPPSPILTAGSDAPECIN 498 PPPSPILTAGSDAPECIN Sbjct 481 PPPSPILTAGSDAPECIN 498 >gi|15842857|ref|NP_337894.1| hypothetical protein MT3367 [Mycobacterium tuberculosis CDC1551] gi|148824469|ref|YP_001289223.1| CPSA-related protein [Mycobacterium tuberculosis F11] gi|167967902|ref|ZP_02550179.1| hypothetical protein MtubH3_07653 [Mycobacterium tuberculosis H37Ra] 7 more sequence titles Length=497 Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust. Identities = 497/497 (100%), Positives = 497/497 (100%), Gaps = 0/497 (0%) Query 2 MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAID 61 MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAID Sbjct 1 MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAID 60 Query 62 ILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSY 121 ILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSY Sbjct 61 ILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSY 120 Query 122 VAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTV 181 VAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTV Sbjct 121 VAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTV 180 Query 182 DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL 241 DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL Sbjct 181 DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL 240 Query 242 PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQL 301 PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQL Sbjct 241 PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQL 300 Query 302 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTP 361 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTP Sbjct 301 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTP 360 Query 362 AKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQV 421 AKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQV Sbjct 361 AKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQV 420 Query 422 AKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTP 481 AKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTP Sbjct 421 AKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTP 480 Query 482 PPSPILTAGSDAPECIN 498 PPSPILTAGSDAPECIN Sbjct 481 PPSPILTAGSDAPECIN 497 >gi|289448956|ref|ZP_06438700.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289421914|gb|EFD19115.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=498 Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/498 (99%), Positives = 497/498 (99%), Gaps = 0/498 (0%) Query 1 VMSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI 60 +MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI Sbjct 1 MMSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI 60 Query 61 DILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS 120 DILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS Sbjct 61 DILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS 120 Query 121 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT 180 YVAAPGL KTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT Sbjct 121 YVAAPGLVKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT 180 Query 181 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD 240 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD Sbjct 181 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD 240 Query 241 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQ 300 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQ Sbjct 241 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQ 300 Query 301 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT 360 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT Sbjct 301 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT 360 Query 361 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ 420 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ Sbjct 361 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ 420 Query 421 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTT 480 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTT Sbjct 421 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTT 480 Query 481 PPPSPILTAGSDAPECIN 498 PPPSPILTAGSDAPECIN Sbjct 481 PPPSPILTAGSDAPECIN 498 >gi|340628245|ref|YP_004746697.1| hypothetical protein MCAN_32861 [Mycobacterium canettii CIPT 140010059] gi|340006435|emb|CCC45617.1| conserved hypothetical protein (CPSA-related protein) [Mycobacterium canettii CIPT 140010059] Length=498 Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/498 (99%), Positives = 495/498 (99%), Gaps = 0/498 (0%) Query 1 VMSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI 60 +MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI Sbjct 1 MMSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI 60 Query 61 DILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS 120 DILLVGLDSRTDAHGNPLS EELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS Sbjct 61 DILLVGLDSRTDAHGNPLSPEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS 120 Query 121 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT 180 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT Sbjct 121 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT 180 Query 181 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD 240 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD Sbjct 181 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD 240 Query 241 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQ 300 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQ Sbjct 241 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQ 300 Query 301 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT 360 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT Sbjct 301 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT 360 Query 361 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ 420 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ Sbjct 361 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ 420 Query 421 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTT 480 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGG DPNGVVSPARA NLGSADDTT Sbjct 421 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGGDPNGVVSPARASNLGSADDTT 480 Query 481 PPPSPILTAGSDAPECIN 498 PPPSPILTAGSDAPECIN Sbjct 481 PPPSPILTAGSDAPECIN 498 >gi|298526743|ref|ZP_07014152.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308371294|ref|ZP_07667129.1| hypothetical protein TMCG_01690 [Mycobacterium tuberculosis SUMu003] gi|308372484|ref|ZP_07667390.1| hypothetical protein TMDG_02102 [Mycobacterium tuberculosis SUMu004] 19 more sequence titles Length=492 Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/492 (99%), Positives = 492/492 (100%), Gaps = 0/492 (0%) Query 7 VVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVG 66 +VRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVG Sbjct 1 MVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVG 60 Query 67 LDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPG 126 LDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPG Sbjct 61 LDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPG 120 Query 127 LGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAE 186 LGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAE Sbjct 121 LGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAE 180 Query 187 IGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDL 246 IGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDL Sbjct 181 IGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDL 240 Query 247 DRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAG 306 DRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAG Sbjct 241 DRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAG 300 Query 307 GNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTA 366 GNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTA Sbjct 301 GNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTA 360 Query 367 NVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELG 426 NVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELG Sbjct 361 NVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELG 420 Query 427 GLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPI 486 GLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPI Sbjct 421 GLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPI 480 Query 487 LTAGSDAPECIN 498 LTAGSDAPECIN Sbjct 481 LTAGSDAPECIN 492 >gi|308370209|ref|ZP_07420655.2| hypothetical protein TMBG_01962 [Mycobacterium tuberculosis SUMu002] gi|308325068|gb|EFP13919.1| hypothetical protein TMBG_01962 [Mycobacterium tuberculosis SUMu002] Length=519 Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/451 (99%), Positives = 451/451 (100%), Gaps = 0/451 (0%) Query 7 VVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVG 66 +VRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVG Sbjct 1 MVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVG 60 Query 67 LDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPG 126 LDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPG Sbjct 61 LDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPG 120 Query 127 LGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAE 186 LGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAE Sbjct 121 LGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAE 180 Query 187 IGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDL 246 IGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDL Sbjct 181 IGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDL 240 Query 247 DRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAG 306 DRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAG Sbjct 241 DRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAG 300 Query 307 GNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTA 366 GNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTA Sbjct 301 GNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTA 360 Query 367 NVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELG 426 NVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELG Sbjct 361 NVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELG 420 Query 427 GLPVVADASIAPGSVRVVLANDYSGPGSGLG 457 GLPVVADASIAPGSVRVVLANDYSGPGSGLG Sbjct 421 GLPVVADASIAPGSVRVVLANDYSGPGSGLG 451 >gi|240172501|ref|ZP_04751160.1| hypothetical protein MkanA1_24515 [Mycobacterium kansasii ATCC 12478] Length=493 Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/499 (88%), Positives = 463/499 (93%), Gaps = 8/499 (1%) Query 2 MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAID 61 M QRVVR A+ TALAVA+VLGTG+AW++VRSFEDGIFHMSAPSLGHGGDDGAID Sbjct 1 MPVQRVVR------AVCTALAVAVVLGTGLAWTNVRSFEDGIFHMSAPSLGHGGDDGAID 54 Query 62 ILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSY 121 ILLVGLDSRTDAHGNPLSAEELATL AGDEEATNTDTIILIR+PNNGKSATAISIPRDSY Sbjct 55 ILLVGLDSRTDAHGNPLSAEELATLRAGDEEATNTDTIILIRIPNNGKSATAISIPRDSY 114 Query 122 VAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTV 181 V APGLGKTKINGVYGQTRETKRAGLVQAGAS EAAAAGTEAGREALIKTVA+LTGVTV Sbjct 115 VQAPGLGKTKINGVYGQTRETKRAGLVQAGASAAEAAAAGTEAGREALIKTVAELTGVTV 174 Query 182 DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL 241 DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRH+L Sbjct 175 DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHEL 234 Query 242 PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQL 301 PRGDLDRVVRQQAVMA+LAHRVISG+TLSSPATLKRLEQAVQRSVVLSSGWDIMDFV+Q+ Sbjct 235 PRGDLDRVVRQQAVMASLAHRVISGKTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVKQM 294 Query 302 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTP 361 Q L+GGNVAFATIPVLDGAGWSDDGMQSVVRVDP QV DWV GLLHEQD+GKT++LAYTP Sbjct 295 QSLSGGNVAFATIPVLDGAGWSDDGMQSVVRVDPHQVADWVGGLLHEQDEGKTEQLAYTP 354 Query 362 AKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQV 421 AKTTA+V NDTDINGLAAAVS+VLS+KGF TGSVGNNDG HV SQVRAAK DDLGAQQV Sbjct 355 AKTTADVANDTDINGLAAAVSEVLSAKGFGTGSVGNNDGGHVKSSQVRAAKTDDLGAQQV 414 Query 422 AKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSA--DDT 479 AKELGGLPVVAD+S+ PG+VRVVLANDY+GPGSGLGG+ V+PARA N G+A DT Sbjct 415 AKELGGLPVVADSSVPPGTVRVVLANDYTGPGSGLGGNVGGNAVAPARASNAGNAGNSDT 474 Query 480 TPPPSPILTAGSDAPECIN 498 PPPSPILTAGSD PECIN Sbjct 475 APPPSPILTAGSDNPECIN 493 >gi|296168937|ref|ZP_06850606.1| LytR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896406|gb|EFG76059.1| LytR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=490 Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/499 (83%), Positives = 451/499 (91%), Gaps = 11/499 (2%) Query 2 MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAID 61 M QRV+R I+TALA+A+VLGTG+AWS+VRSFEDGIFHMSAPSLG GGDDGAID Sbjct 1 MPVQRVIRV------IATALALAVVLGTGLAWSNVRSFEDGIFHMSAPSLGKGGDDGAID 54 Query 62 ILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSY 121 ILLVG+DSRTDAHGNPLS EELATL AGDEEATNTDTIILIR+PNNGKSATAISIPRDSY Sbjct 55 ILLVGMDSRTDAHGNPLSQEELATLRAGDEEATNTDTIILIRIPNNGKSATAISIPRDSY 114 Query 122 VAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTV 181 VAAPGLGKTKINGVYGQTRE KR LV+AG S +AAA GTEAGREALIKTVADLTGVTV Sbjct 115 VAAPGLGKTKINGVYGQTREAKRVNLVKAGDSAEDAAAQGTEAGREALIKTVADLTGVTV 174 Query 182 DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL 241 DHYAEIGLLGF+LI DALGGVDVCLKEPV+EPLSGADFPAG Q+L+GP+ALSFVRQRH+L Sbjct 175 DHYAEIGLLGFSLITDALGGVDVCLKEPVFEPLSGADFPAGPQRLDGPEALSFVRQRHEL 234 Query 242 PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQL 301 PRGDLDRVVRQQ VMA+LAHRVISG+TLSSP TLKRLE AVQRSVV+SSGWD+MDFV+Q+ Sbjct 235 PRGDLDRVVRQQVVMASLAHRVISGKTLSSPTTLKRLEAAVQRSVVISSGWDVMDFVQQM 294 Query 302 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTP 361 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQV DWV GLLHEQ+QGKT+E+AYTP Sbjct 295 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVADWVSGLLHEQEQGKTEEVAYTP 354 Query 362 AKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQV 421 AKTTA+VVNDTDINGLA+AVS+VL++KGF G+VGNNDG HV GSQVRAAK DDLGAQ+V Sbjct 355 AKTTASVVNDTDINGLASAVSQVLTAKGFGAGTVGNNDGGHVKGSQVRAAKTDDLGAQEV 414 Query 422 AKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLG--SADDT 479 +KELGGLPVVAD S+A GSV+VVLANDYSGPGSGL G+ G V PAR N+G +AD Sbjct 415 SKELGGLPVVADPSVAAGSVKVVLANDYSGPGSGLSGT---GTVMPARVSNVGAVAADPN 471 Query 480 TPPPSPILTAGSDAPECIN 498 P PSPILTAGSD PECIN Sbjct 472 VPAPSPILTAGSDKPECIN 490 >gi|41409479|ref|NP_962315.1| hypothetical protein MAP3381 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398310|gb|AAS05931.1| hypothetical protein MAP_3381 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459656|gb|EGO38591.1| cell envelope-related function transcriptional attenuator [Mycobacterium avium subsp. paratuberculosis S397] Length=490 Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/499 (82%), Positives = 449/499 (90%), Gaps = 11/499 (2%) Query 2 MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAID 61 M QRVVR I+TAL +A+VLGTG+AWS+VRSFEDGIFHMSAPSLG GGDDGAID Sbjct 1 MPVQRVVRV------IATALTLAVVLGTGIAWSNVRSFEDGIFHMSAPSLGKGGDDGAID 54 Query 62 ILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSY 121 ILLVGLDSRTDAHGNPLS +EL TL AGDEEATNTDTIILIR+PNNGKSATAISIPRDSY Sbjct 55 ILLVGLDSRTDAHGNPLSQQELETLRAGDEEATNTDTIILIRIPNNGKSATAISIPRDSY 114 Query 122 VAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTV 181 VAAPGLGKTKINGVYGQTRE KRA LV+AG S +AAA GTEAGREALIKTVADLTGVTV Sbjct 115 VAAPGLGKTKINGVYGQTREAKRASLVKAGDSAEDAAAQGTEAGREALIKTVADLTGVTV 174 Query 182 DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL 241 DHYAEIGLLGFALI DALGGVDVCLKEPV+EPLSGADFPAG Q+L+GP+ALSFVRQRH+L Sbjct 175 DHYAEIGLLGFALITDALGGVDVCLKEPVFEPLSGADFPAGPQRLSGPEALSFVRQRHEL 234 Query 242 PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQL 301 PRGDLDRVVRQQ VMA+LAHRVISGQTLSSPAT+KRLE AVQRSVV+S+GWD+MDFV+Q+ Sbjct 235 PRGDLDRVVRQQVVMASLAHRVISGQTLSSPATVKRLEAAVQRSVVISAGWDVMDFVQQM 294 Query 302 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTP 361 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDP QV DWV LLH+Q+QGKT+E+AYTP Sbjct 295 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPHQVADWVGSLLHDQEQGKTEEIAYTP 354 Query 362 AKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQV 421 AKTTA+VVNDTDINGLAAAVS VLS+KGF TG+VGNNDG HV SQVRAAK+DDLGA++V Sbjct 355 AKTTASVVNDTDINGLAAAVSDVLSAKGFATGTVGNNDGGHVKTSQVRAAKSDDLGAKEV 414 Query 422 AKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLG--SADDT 479 +KELGGLPVVAD+S+APG+VRVVLANDYSGPGSGL G++ + PA+ G S +D Sbjct 415 SKELGGLPVVADSSLAPGAVRVVLANDYSGPGSGLSGTES---IMPAKVSTAGAVSTNDK 471 Query 480 TPPPSPILTAGSDAPECIN 498 P PSPILTAGSD PECIN Sbjct 472 APAPSPILTAGSDKPECIN 490 >gi|118466640|ref|YP_883373.1| cell envelope-related function transcriptional attenuator [Mycobacterium avium 104] gi|254776667|ref|ZP_05218183.1| hypothetical protein MaviaA2_18641 [Mycobacterium avium subsp. avium ATCC 25291] gi|118167927|gb|ABK68824.1| cell envelope-related transcriptional attenuator domain family protein [Mycobacterium avium 104] Length=482 Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/484 (84%), Positives = 443/484 (92%), Gaps = 5/484 (1%) Query 17 ISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGN 76 I+TAL +A+VLGTG+AWS+VRSFEDGIFHMSAPSLG GGDDGAIDILLVGLDSRTDAHGN Sbjct 2 IATALTLAVVLGTGIAWSNVRSFEDGIFHMSAPSLGKGGDDGAIDILLVGLDSRTDAHGN 61 Query 77 PLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVY 136 PLS +EL TL AGDEEATNTDTIILIR+PNNGKSATAISIPRDSYVAAPGLGKTKINGVY Sbjct 62 PLSQQELETLRAGDEEATNTDTIILIRIPNNGKSATAISIPRDSYVAAPGLGKTKINGVY 121 Query 137 GQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIA 196 GQTRE KRA LV+AG S +AAA GTEAGREALIKTVADLTGVTVDHYAEIGLLGFALI Sbjct 122 GQTREAKRASLVKAGDSAEDAAAQGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIT 181 Query 197 DALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVM 256 DALGGVDVCLKEPV+EPLSGADFPAG Q+L+GP+ALSFVRQRH+LPRGDLDRVVRQQ VM Sbjct 182 DALGGVDVCLKEPVFEPLSGADFPAGPQRLSGPEALSFVRQRHELPRGDLDRVVRQQVVM 241 Query 257 AALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPV 316 A+LAHRVISGQTLSSPAT+KRLE AVQRSVV+S+GWD+MDFV+Q+QKLAGGNVAFATIPV Sbjct 242 ASLAHRVISGQTLSSPATVKRLEAAVQRSVVISAGWDVMDFVQQMQKLAGGNVAFATIPV 301 Query 317 LDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDING 376 LDGAGWSDDGMQSVVRVDP QV DWV LLH+Q+QGKT+E+AYTPAKTTA+VVNDTDING Sbjct 302 LDGAGWSDDGMQSVVRVDPHQVADWVGSLLHDQEQGKTEEIAYTPAKTTASVVNDTDING 361 Query 377 LAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASI 436 LAAAVS VLS+KGF TG+VGNNDG HV SQVRAAK+DDLGA++V+KELGGLPVVAD+S+ Sbjct 362 LAAAVSDVLSAKGFATGTVGNNDGGHVKTSQVRAAKSDDLGAKEVSKELGGLPVVADSSL 421 Query 437 APGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLG--SADDTTPPPSPILTAGSDAP 494 APG+VRVVLANDYSGPGSGL G++ + PA+ G S +D P PSPILTAGSD P Sbjct 422 APGAVRVVLANDYSGPGSGLSGTES---IMPAKVSTAGAVSTNDKAPAPSPILTAGSDKP 478 Query 495 ECIN 498 ECIN Sbjct 479 ECIN 482 >gi|254821360|ref|ZP_05226361.1| cell envelope-related function transcriptional attenuator [Mycobacterium intracellulare ATCC 13950] Length=482 Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/484 (82%), Positives = 442/484 (92%), Gaps = 5/484 (1%) Query 17 ISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGN 76 I+T L +A+V+GTG+AWS+VRSFEDGIFHMSAPSLG GGDDGAIDILLVGLDSRTDAHGN Sbjct 2 IATVLTLAVVVGTGIAWSNVRSFEDGIFHMSAPSLGKGGDDGAIDILLVGLDSRTDAHGN 61 Query 77 PLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVY 136 PLS EEL TL AGDEEATNTDTIILIR+PNNGKSATAISIPRDSYVAAPGLGKTKINGVY Sbjct 62 PLSQEELDTLRAGDEEATNTDTIILIRIPNNGKSATAISIPRDSYVAAPGLGKTKINGVY 121 Query 137 GQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIA 196 GQTRE KRA LV+AG + +AAA GTEAGREALIKTVADLTGVTVDHYAEIGLLGF+LI Sbjct 122 GQTREAKRASLVRAGDAAADAAAQGTEAGREALIKTVADLTGVTVDHYAEIGLLGFSLIT 181 Query 197 DALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVM 256 +ALGGVDVCLKEPV+EPLSGADFPAG Q+L+GP+ALSFVRQRH+LPRGDLDRVVRQQ VM Sbjct 182 EALGGVDVCLKEPVFEPLSGADFPAGPQRLSGPEALSFVRQRHELPRGDLDRVVRQQVVM 241 Query 257 AALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPV 316 A+LAHRVISG+TLSSP T++RLE AVQRSVV+S+GWD+MDFV+Q+QKLAGGNVAFATIPV Sbjct 242 ASLAHRVISGKTLSSPTTVRRLEAAVQRSVVISAGWDVMDFVQQMQKLAGGNVAFATIPV 301 Query 317 LDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDING 376 LDGAGWSDDGMQSVVRVDP QV DWV GLLHEQ++GKT+E+AYTPAKTTA+VVNDTDING Sbjct 302 LDGAGWSDDGMQSVVRVDPHQVADWVNGLLHEQEEGKTEEIAYTPAKTTASVVNDTDING 361 Query 377 LAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASI 436 LAAAVS VLS+KGF TG+VGNNDG HV SQVRAAK+DD+GA++V+KELGGLPV+ADAS+ Sbjct 362 LAAAVSDVLSAKGFATGTVGNNDGGHVKASQVRAAKSDDMGAKEVSKELGGLPVIADASL 421 Query 437 APGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLG--SADDTTPPPSPILTAGSDAP 494 APG+VRVVLANDYSGPGSGL G++ + PAR G + + PPPSPILTAGSD P Sbjct 422 APGAVRVVLANDYSGPGSGLSGTE---TIMPARVSTAGAVATNPNVPPPSPILTAGSDKP 478 Query 495 ECIN 498 ECIN Sbjct 479 ECIN 482 >gi|342861471|ref|ZP_08718118.1| hypothetical protein MCOL_21401 [Mycobacterium colombiense CECT 3035] gi|342130960|gb|EGT84249.1| hypothetical protein MCOL_21401 [Mycobacterium colombiense CECT 3035] Length=482 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/484 (83%), Positives = 436/484 (91%), Gaps = 5/484 (1%) Query 17 ISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGN 76 I+TAL +A+VLGTG+AWS+VRSFEDGIFHMSAPSLG GGDDGAIDILLVGLDSRTDAHGN Sbjct 2 IATALTLAVVLGTGIAWSNVRSFEDGIFHMSAPSLGKGGDDGAIDILLVGLDSRTDAHGN 61 Query 77 PLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVY 136 PLS EEL TL AGDEEATNTDTIILIR+PNNGKSATAISIPRDSYVAAPGLGKTKINGVY Sbjct 62 PLSQEELDTLRAGDEEATNTDTIILIRIPNNGKSATAISIPRDSYVAAPGLGKTKINGVY 121 Query 137 GQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIA 196 GQTRE KR LV+AGAS TEAAA GTEAGREALIKTVADLTGVTVDHYAEIGLLGF+LI Sbjct 122 GQTREAKRTALVKAGASATEAAAQGTEAGREALIKTVADLTGVTVDHYAEIGLLGFSLIT 181 Query 197 DALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVM 256 DALGGVDVCLKEPV+EPLSGADFPAG Q+LNGP+ALSFVRQRH+LPRGDLDRVVRQQ VM Sbjct 182 DALGGVDVCLKEPVFEPLSGADFPAGPQRLNGPEALSFVRQRHELPRGDLDRVVRQQVVM 241 Query 257 AALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPV 316 A+LAHRVISGQTLSSP T+KRLE AVQRSVV+S+GWD+MDFV+Q+QKLAGGNVAFATIPV Sbjct 242 ASLAHRVISGQTLSSPTTVKRLEAAVQRSVVISAGWDVMDFVQQMQKLAGGNVAFATIPV 301 Query 317 LDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDING 376 LDGAGWSDDGMQSVVR+DP QV DWV GLLH+Q+QGKT+E+AYTPAKTTA+VVNDTDING Sbjct 302 LDGAGWSDDGMQSVVRLDPHQVADWVAGLLHDQEQGKTEEIAYTPAKTTASVVNDTDING 361 Query 377 LAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASI 436 LA+AVS VLS+KGF TG+VGNN+ HV SQVRAAK+DDLGA++V+KELGGLPVVADAS+ Sbjct 362 LASAVSDVLSAKGFATGTVGNNESGHVKASQVRAAKSDDLGAKEVSKELGGLPVVADASL 421 Query 437 APGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLG--SADDTTPPPSPILTAGSDAP 494 APG+VRVVLANDYS G + + PA+ G +AD P PSPILTAGSD P Sbjct 422 APGAVRVVLANDYS---GPGSGLSGSAEIMPAKVSTAGAVTADPRVPAPSPILTAGSDKP 478 Query 495 ECIN 498 ECIN Sbjct 479 ECIN 482 >gi|15827317|ref|NP_301580.1| hypothetical protein ML0750 [Mycobacterium leprae TN] gi|221229795|ref|YP_002503211.1| hypothetical protein MLBr_00750 [Mycobacterium leprae Br4923] gi|13092866|emb|CAC30259.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932902|emb|CAR70844.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=489 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/498 (79%), Positives = 429/498 (87%), Gaps = 10/498 (2%) Query 2 MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAID 61 M QRVVR A+ TAL +AIVLGTG+ W+S RSFEDGIFHMSAPSLG GG+DGAID Sbjct 1 MPVQRVVR------AVVTALTLAIVLGTGITWTSFRSFEDGIFHMSAPSLGKGGNDGAID 54 Query 62 ILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSY 121 ILLVGLDSRTDA+GNPLSAEELATL AGDEEATNTDTIILIR+PNNGKSATAISIPRDSY Sbjct 55 ILLVGLDSRTDAYGNPLSAEELATLRAGDEEATNTDTIILIRIPNNGKSATAISIPRDSY 114 Query 122 VAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTV 181 V APGLGK KINGVYGQTRE KRA LV+ G S +AAA GTEAGREALIKTVADLTGVTV Sbjct 115 VQAPGLGKAKINGVYGQTREAKRASLVRTGDSAEDAAAQGTEAGREALIKTVADLTGVTV 174 Query 182 DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL 241 DHYAEIGLLGFALI DALGGVDVCLK+ V+EP+SGADFPAGRQKLNGPQALSFVRQRH+L Sbjct 175 DHYAEIGLLGFALIVDALGGVDVCLKDAVFEPMSGADFPAGRQKLNGPQALSFVRQRHEL 234 Query 242 PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQL 301 PRGDLDRVVRQQAVMA+L HRVISGQTLS+P+T+K LEQA+QRSVV+SSGW++MDF++QL Sbjct 235 PRGDLDRVVRQQAVMASLVHRVISGQTLSNPSTIKHLEQAIQRSVVISSGWNLMDFLKQL 294 Query 302 QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTP 361 Q LA VAFATIPVLD GWSDDGMQSVVRVDP QVQ++V GLLH Q Q KTDELAYTP Sbjct 295 QSLADRKVAFATIPVLDETGWSDDGMQSVVRVDPHQVQNFVSGLLHNQAQDKTDELAYTP 354 Query 362 AKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQV 421 AK TANV NDTDINGLAAAVS +L++KGF GSV NN G HV SQVRAAK+DDLGAQ+V Sbjct 355 AKITANVANDTDINGLAAAVSDILTTKGFIAGSVANNQGSHVKSSQVRAAKSDDLGAQKV 414 Query 422 AKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLG-SADDTT 480 +KELGGLP+V D SI GSV V+LANDY+GPGSGL G NG ++ A N G SAD Sbjct 415 SKELGGLPIVVDGSIPAGSVLVILANDYTGPGSGLFG---NGSIASDYASNPGASADPNI 471 Query 481 PPPSPILTAGSDAPECIN 498 P PSPILTAGSD PECIN Sbjct 472 PVPSPILTAGSDQPECIN 489 >gi|183981296|ref|YP_001849587.1| hypothetical protein MMAR_1274 [Mycobacterium marinum M] gi|183174622|gb|ACC39732.1| conserved hypothetical protein [Mycobacterium marinum M] Length=485 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/472 (86%), Positives = 431/472 (92%), Gaps = 6/472 (1%) Query 27 LGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAEELATL 86 LGTG+AW++VRSFE GIFHMSAPSLGHG DDGAIDILLVGLDSRTDAHGNPL+ EELATL Sbjct 20 LGTGLAWTNVRSFEGGIFHMSAPSLGHGADDGAIDILLVGLDSRTDAHGNPLTPEELATL 79 Query 87 HAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAG 146 AGDEEATNTDTIIL+R+PNNG+SATAISIPRDSYV APGLGKTKINGVYGQTRETKRAG Sbjct 80 RAGDEEATNTDTIILVRIPNNGRSATAISIPRDSYVQAPGLGKTKINGVYGQTRETKRAG 139 Query 147 LVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCL 206 LVQAGAS EAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALI DALGGVDVCL Sbjct 140 LVQAGASAAEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALITDALGGVDVCL 199 Query 207 KEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMAALAHRVISG 266 PVYEPLSGADFPAGRQKL GPQAL+FVRQRH+LPRGDLDRVVRQQAVMA+LAHRVISG Sbjct 200 NGPVYEPLSGADFPAGRQKLTGPQALAFVRQRHELPRGDLDRVVRQQAVMASLAHRVISG 259 Query 267 QTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAGWSDDG 326 +TLSSP T++RLEQAVQRSVVLSSGW+I+DFV+QLQ+L GGNVAFATIPVLDG+GWSDDG Sbjct 260 KTLSSPTTVRRLEQAVQRSVVLSSGWNIIDFVQQLQQLTGGNVAFATIPVLDGSGWSDDG 319 Query 327 MQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDINGLAAAVSKVLS 386 MQSVVRVDP QV DWV LL+EQ++GKT ELAY PAKTTA+VVNDTDINGLAAAVS VLS Sbjct 320 MQSVVRVDPHQVADWVGSLLNEQNEGKTAELAYAPAKTTADVVNDTDINGLAAAVSDVLS 379 Query 387 SKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLA 446 +KGFTTGSVGNN+ HV SQVRAA DDLGAQQVAKELGGLPVVAD SI GSVRVVL+ Sbjct 380 AKGFTTGSVGNNEAGHVKLSQVRAATTDDLGAQQVAKELGGLPVVADTSIPSGSVRVVLS 439 Query 447 NDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPILTAGSDAPECIN 498 NDYSGPGSGLGG+ ++PA A N G + DT PPPSPILTAGSD PECIN Sbjct 440 NDYSGPGSGLGGA-----MAPAHASNPGYS-DTAPPPSPILTAGSDQPECIN 485 >gi|118618083|ref|YP_906415.1| hypothetical protein MUL_2613 [Mycobacterium ulcerans Agy99] gi|118570193|gb|ABL04944.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=486 Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/472 (85%), Positives = 430/472 (92%), Gaps = 6/472 (1%) Query 27 LGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAEELATL 86 LGTG+AW++VRSFE GIFHMSAPSLGHG DDGAIDILLVGLDSRTDAHGNPL+ EELATL Sbjct 21 LGTGLAWTNVRSFEGGIFHMSAPSLGHGADDGAIDILLVGLDSRTDAHGNPLTPEELATL 80 Query 87 HAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAG 146 AGDEEATNTDTIIL+R+PNNG+SATAISIPRDSYV APGLGKTKINGVYGQTRETKRAG Sbjct 81 RAGDEEATNTDTIILVRIPNNGRSATAISIPRDSYVQAPGLGKTKINGVYGQTRETKRAG 140 Query 147 LVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCL 206 LVQAGAS EAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALI DALGGVDVCL Sbjct 141 LVQAGASAAEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALITDALGGVDVCL 200 Query 207 KEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMAALAHRVISG 266 PVYEPLSGADFPAGRQKL GPQAL+FVRQRH+LPRGDLDRVVRQQAVMA+LAHRVISG Sbjct 201 NGPVYEPLSGADFPAGRQKLTGPQALAFVRQRHELPRGDLDRVVRQQAVMASLAHRVISG 260 Query 267 QTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAGWSDDG 326 +TLSSP T++RLEQAVQRSVVLSSGW+I+DFV+QLQ+L GGNVAFATIPVLDG+GWSDDG Sbjct 261 KTLSSPTTVRRLEQAVQRSVVLSSGWNIIDFVQQLQQLTGGNVAFATIPVLDGSGWSDDG 320 Query 327 MQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDINGLAAAVSKVLS 386 MQSVVRVDP QV DWV LL+EQ++GKT ELAY PAKTTA+VVNDTDINGLAAAVS VLS Sbjct 321 MQSVVRVDPHQVADWVGSLLNEQNEGKTAELAYAPAKTTADVVNDTDINGLAAAVSDVLS 380 Query 387 SKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLA 446 +KGFTTGSVGNN+ HV SQVRA DDLGAQQVAKELGGLPVVAD SI GSVRVVL+ Sbjct 381 AKGFTTGSVGNNEAGHVKLSQVRAVTTDDLGAQQVAKELGGLPVVADTSIPSGSVRVVLS 440 Query 447 NDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPILTAGSDAPECIN 498 NDYSGPGSGLGG+ ++PA A N G + DT PPPSPILTAGSD PECIN Sbjct 441 NDYSGPGSGLGGA-----MAPAHASNPGYS-DTAPPPSPILTAGSDQPECIN 486 >gi|126433956|ref|YP_001069647.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. JLS] gi|126233756|gb|ABN97156.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. JLS] Length=490 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/489 (75%), Positives = 403/489 (83%), Gaps = 4/489 (0%) Query 12 RTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRT 71 R RA++ + +A+VLGTGVAWS +RSFE+GI H+S+ SLG GG+DGAID+LLVG DSRT Sbjct 4 RVLRAVAVTVTLAVVLGTGVAWSRIRSFEEGINHISSASLGEGGEDGAIDVLLVGSDSRT 63 Query 72 DAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTK 131 DAHGNPLS EELA L AG++ +TNTDTIILIR+PNNG+SATAISIPRDSYV APGLGK K Sbjct 64 DAHGNPLSEEELAVLRAGNDVSTNTDTIILIRIPNNGQSATAISIPRDSYVQAPGLGKMK 123 Query 132 INGVYGQTRETKRAGLVQA-GASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLL 190 INGVYG K LV+ G P EA E GREALIKTVA+LTGVTVDHYAEIGLL Sbjct 124 INGVYGSVHLEKLKELVEEQGMDPAEAEPLAVEDGREALIKTVANLTGVTVDHYAEIGLL 183 Query 191 GFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVV 250 GFALI DALGGVDVCLKEPVYEPLSGADFPAG QKLNGPQALSFVRQRHDLPRGDLDRV Sbjct 184 GFALITDALGGVDVCLKEPVYEPLSGADFPAGWQKLNGPQALSFVRQRHDLPRGDLDRVT 243 Query 251 RQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVA 310 RQQAVMA+LAH VIS +TLSSPATL RLE AVQRSVVLS GWDIMDFV QLQKLA GNVA Sbjct 244 RQQAVMASLAHEVISSKTLSSPATLSRLEAAVQRSVVLSDGWDIMDFVDQLQKLAAGNVA 303 Query 311 FATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVN 370 FATIPV+ GWSDDGMQSVVRVDP VQ+WV GLL+EQD+GKT+ELAYTP KTT VVN Sbjct 304 FATIPVVREDGWSDDGMQSVVRVDPAAVQEWVTGLLNEQDEGKTEELAYTPDKTTVEVVN 363 Query 371 DTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPV 430 TDINGLAA+VS VLS KGFT G+ GN +G V GSQVRAAKADDLGAQ VAK+LGGL V Sbjct 364 ATDINGLAASVSTVLSQKGFTPGATGNFEGGAVTGSQVRAAKADDLGAQAVAKDLGGLTV 423 Query 431 VADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSAD-DTTPPPSPILTA 489 V D S+APG+VRVVLA+DY+GPGSGL G+DP + A G+ D PPP I+TA Sbjct 424 VEDGSVAPGTVRVVLADDYTGPGSGLDGTDPT--LLAADPVATGATDPAAPPPPPQIITA 481 Query 490 GSDAPECIN 498 GSD PEC+N Sbjct 482 GSDDPECVN 490 >gi|108798289|ref|YP_638486.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. MCS] gi|119867385|ref|YP_937337.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. KMS] gi|108768708|gb|ABG07430.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. MCS] gi|119693474|gb|ABL90547.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. KMS] Length=490 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/489 (75%), Positives = 403/489 (83%), Gaps = 4/489 (0%) Query 12 RTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRT 71 R RA++ + +A+VLGTGVAWS +RSFE+GI H+S+ SLG GG+DGAID+LLVG DSRT Sbjct 4 RVLRAVAVTVTLAVVLGTGVAWSRIRSFEEGINHISSASLGEGGEDGAIDVLLVGSDSRT 63 Query 72 DAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTK 131 DAHGNPLS EELA L AG++ +TNTDTIILIR+PNNG+SATAISIPRDSYV APGLGK K Sbjct 64 DAHGNPLSEEELAVLRAGNDVSTNTDTIILIRIPNNGQSATAISIPRDSYVQAPGLGKMK 123 Query 132 INGVYGQTRETKRAGLVQA-GASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLL 190 INGVYG K LV+ G P EA E GREALIKTVA+LTGVTVDHYAEIGLL Sbjct 124 INGVYGSVHLEKLKELVEEQGMDPAEAEPLAVEDGREALIKTVANLTGVTVDHYAEIGLL 183 Query 191 GFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVV 250 GFALI DALGGVDVCLKEPVYEPLSGADFPAG QKLNGPQALSFVRQRHDLPRGDLDRV Sbjct 184 GFALITDALGGVDVCLKEPVYEPLSGADFPAGWQKLNGPQALSFVRQRHDLPRGDLDRVT 243 Query 251 RQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVA 310 RQQAVMA+LAH VIS +TLSSPATL RLE AVQRSVVLS GWDIMDFV QLQKLA GNVA Sbjct 244 RQQAVMASLAHEVISSKTLSSPATLSRLEAAVQRSVVLSDGWDIMDFVDQLQKLAAGNVA 303 Query 311 FATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVN 370 FATIPV+ GWSDDGMQSVVRVDP VQ+WV GLL+EQD+GKT+ELAYTP KTT VVN Sbjct 304 FATIPVVREDGWSDDGMQSVVRVDPAAVQEWVTGLLNEQDEGKTEELAYTPDKTTVEVVN 363 Query 371 DTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPV 430 TDINGLAA+VS VLS KGFT G+ GN +G V GSQVRAAKADDLGAQ VA++LGGL V Sbjct 364 ATDINGLAASVSTVLSQKGFTPGATGNFEGGAVTGSQVRAAKADDLGAQAVARDLGGLTV 423 Query 431 VADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSAD-DTTPPPSPILTA 489 V D S+APG+VRVVLA+DY+GPGSGL G+DP + A G+ D PPP I+TA Sbjct 424 VEDGSVAPGTVRVVLADDYTGPGSGLDGTDPT--LLAADPVATGATDPAAPPPPPQIITA 481 Query 490 GSDAPECIN 498 GSD PEC+N Sbjct 482 GSDDPECVN 490 >gi|120402726|ref|YP_952555.1| cell envelope-related transcriptional attenuator [Mycobacterium vanbaalenii PYR-1] gi|119955544|gb|ABM12549.1| cell envelope-related transcriptional attenuator [Mycobacterium vanbaalenii PYR-1] Length=493 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/486 (73%), Positives = 392/486 (81%), Gaps = 2/486 (0%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAH 74 RAIS A+AV +VLGTG+AW +RSFE GI H++ +LG GG+DGAIDILLVG DSRTDAH Sbjct 8 RAISVAMAVVVVLGTGIAWGKIRSFESGINHINPVALGEGGEDGAIDILLVGSDSRTDAH 67 Query 75 GNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKING 134 GNPLS EE A L AGDE +TNTDTIILIR+PNNG+SATAISIPRDSYV +PG+GK KING Sbjct 68 GNPLSDEERAMLRAGDEVSTNTDTIILIRIPNNGQSATAISIPRDSYVESPGIGKLKING 127 Query 135 VYGQTRETKRAGLVQA-GASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFA 193 VYG K LV+ G P A AGRE LIKTVA+LTGVTVDHYAEIGLLGFA Sbjct 128 VYGSVHLEKMKELVEEQGVDPAVAEPEAQAAGREQLIKTVANLTGVTVDHYAEIGLLGFA 187 Query 194 LIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQ 253 LI DALGGV+VCL PVYEPLSGADFPAG QKLNG QALSFVRQRHDLPRGDLDRV RQQ Sbjct 188 LITDALGGVNVCLNAPVYEPLSGADFPAGWQKLNGTQALSFVRQRHDLPRGDLDRVARQQ 247 Query 254 AVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFAT 313 AVMA++AH VIS +TLSSP TL LE AVQRSVVLS GW+IMDFV QLQKLAGGN+AFAT Sbjct 248 AVMASMAHEVISSKTLSSPTTLNNLEDAVQRSVVLSDGWNIMDFVEQLQKLAGGNIAFAT 307 Query 314 IPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTD 373 IP+++ AGWSDDGMQSVVRVDP V+DWV GLLH+QD+GKT+EL Y+ KTT VVNDTD Sbjct 308 IPIVEEAGWSDDGMQSVVRVDPAAVKDWVTGLLHDQDEGKTEELTYSNDKTTVEVVNDTD 367 Query 374 INGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVAD 433 INGLAAAVS VLS KGFT G+VGNNDG V SQV+AAK DDLGAQ VA+ELGGLPVV + Sbjct 368 INGLAAAVSHVLSGKGFTKGNVGNNDGAKVTASQVQAAKTDDLGAQAVAQELGGLPVVEN 427 Query 434 ASIAPGSVRVVLANDYSGPGSGLGGSDPNGV-VSPARAFNLGSADDTTPPPSPILTAGSD 492 A + GSVRVVLA DY+GPG+GL GSD + P+ + + T P P PILTAGS+ Sbjct 428 AQVPQGSVRVVLAADYTGPGAGLDGSDVTLMGADPSTSGVVTDTGATVPAPPPILTAGSN 487 Query 493 APECIN 498 PEC+N Sbjct 488 DPECVN 493 >gi|333991658|ref|YP_004524272.1| hypothetical protein JDM601_3018 [Mycobacterium sp. JDM601] gi|333487626|gb|AEF37018.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=484 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/495 (71%), Positives = 403/495 (82%), Gaps = 24/495 (4%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAH 74 R I+T AV IVLGTGVAWS VRSFEDGIFH+++ +LG GG DGA+DILLVG+DSRTDAH Sbjct 3 RVIATVAAVVIVLGTGVAWSQVRSFEDGIFHVASLALGQGGSDGAVDILLVGMDSRTDAH 62 Query 75 GNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKING 134 GNPL+ EELA L GD++ATNTDTIIL+R+PNNGKSATAISIPRDSYVAAPGL KTKING Sbjct 63 GNPLTPEELAALRVGDDDATNTDTIILVRIPNNGKSATAISIPRDSYVAAPGLDKTKING 122 Query 135 VYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFAL 194 VYG TR LV+ G P +A A GT+AGREALI+TVA+LTGVTVDHYAEIGLLGF+L Sbjct 123 VYGATRLETADALVETGMDPVQAQARGTQAGREALIQTVAELTGVTVDHYAEIGLLGFSL 182 Query 195 IADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQA 254 I DALGGVDVCL+EPVYE LSGADFPAG Q+L G QALSFVRQRH+LP GDLDRV RQQA Sbjct 183 ITDALGGVDVCLREPVYEELSGADFPAGWQRLGGAQALSFVRQRHELPHGDLDRVRRQQA 242 Query 255 VMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATI 314 VMA+LAH+VISG+TLSSPATL RL+ AVQRSVVLS GWD++DF+ +LQ LAGG VAFATI Sbjct 243 VMASLAHKVISGKTLSSPATLSRLQAAVQRSVVLSEGWDVLDFITKLQDLAGGKVAFATI 302 Query 315 PVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDI 374 PVL+ +GWSDDGMQSVVRVDP QV DWV GLLH+QD+GKT++LAY P TTA+V NDTDI Sbjct 303 PVLEESGWSDDGMQSVVRVDPGQVADWVDGLLHDQDEGKTEQLAYEPEHTTASVYNDTDI 362 Query 375 NGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADA 434 NGLAAAVS VL +KGF TG+VGNN+ HVP SQV+AA DD GAQ VAK+LGGLPVV++ Sbjct 363 NGLAAAVSGVLRAKGFGTGAVGNNEAAHVPASQVQAADTDDPGAQAVAKDLGGLPVVSNE 422 Query 435 SIAPGSVRVVLANDYSGPG-----------SGLGGSDPNGVVSPARAFNLGSADDTTPPP 483 S+ G+VRVVLA+DY+GPG +G+ G++ GV PPP Sbjct 423 SVPAGAVRVVLADDYTGPGSGLGGGGYAEVAGISGAEDGGV-------------SEIPPP 469 Query 484 SPILTAGSDAPECIN 498 SPILTAGS P+C+N Sbjct 470 SPILTAGSGDPQCVN 484 >gi|145225315|ref|YP_001135993.1| cell envelope-related transcriptional attenuator [Mycobacterium gilvum PYR-GCK] gi|145217801|gb|ABP47205.1| cell envelope-related transcriptional attenuator [Mycobacterium gilvum PYR-GCK] Length=493 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/486 (72%), Positives = 394/486 (82%), Gaps = 2/486 (0%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAH 74 RA+S ALAVAIV+GTGVAW +RSFE GI H++ +LG G+DGAIDILLVG DSRTDAH Sbjct 8 RAVSVALAVAIVIGTGVAWGKIRSFEAGINHINPIALGGEGEDGAIDILLVGSDSRTDAH 67 Query 75 GNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKING 134 GNPLS +E A L AGDE +TNTDTIILIR+PNNG+SATAISIPRDSYV APG+GK KING Sbjct 68 GNPLSDQERAMLRAGDEVSTNTDTIILIRIPNNGESATAISIPRDSYVEAPGIGKMKING 127 Query 135 VYGQTRETKRAGLV-QAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFA 193 VYG + LV Q G P EA AGRE LIKTVA+LTGVTVDHYAEIGLLGFA Sbjct 128 VYGSVHLEEMKELVEQQGVDPAEAEPEAQAAGREELIKTVANLTGVTVDHYAEIGLLGFA 187 Query 194 LIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQ 253 LI DALGGVDVCL PVYEPLSGADFPAG QKLNG QALSFVRQRHDLPRGDLDRV RQQ Sbjct 188 LITDALGGVDVCLNAPVYEPLSGADFPAGWQKLNGTQALSFVRQRHDLPRGDLDRVARQQ 247 Query 254 AVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFAT 313 A MA++AH VIS +TLSSP+TL LE AVQRSVVLS GWDIMDFV QLQKLA GNVAFAT Sbjct 248 AAMASMAHEVISSKTLSSPSTLSALESAVQRSVVLSEGWDIMDFVEQLQKLAAGNVAFAT 307 Query 314 IPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTD 373 IP+L+ AGWSDDGMQSVVRVDP++V+DWV LL++QDQGKT+ELAY+ KTT V ND+D Sbjct 308 IPILEEAGWSDDGMQSVVRVDPKEVKDWVTSLLNDQDQGKTEELAYSNDKTTVEVYNDSD 367 Query 374 INGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVAD 433 +NGLAAAV+ VL+ KGFT G+VGNN+G V GSQVRAAK DD+GAQ VA +LGGL VV D Sbjct 368 VNGLAAAVAHVLTGKGFTQGNVGNNEGPKVTGSQVRAAKVDDMGAQAVALDLGGLEVVED 427 Query 434 ASIAPGSVRVVLANDYSGPGSGLGGSDPNGV-VSPARAFNLGSADDTTPPPSPILTAGSD 492 +S+ P +VRVVLA+DY+GPG+GL GSD + P+ + + P PSPI+TAGSD Sbjct 428 SSVPPDTVRVVLADDYTGPGAGLDGSDVTLMGADPSTSGVVSDTGAAVPAPSPIITAGSD 487 Query 493 APECIN 498 P+C+N Sbjct 488 DPKCVN 493 >gi|315445613|ref|YP_004078492.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. Spyr1] gi|315263916|gb|ADU00658.1| cell envelope-related transcriptional attenuator [Mycobacterium sp. Spyr1] Length=493 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/486 (71%), Positives = 392/486 (81%), Gaps = 2/486 (0%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAH 74 RA+S ALAVAIV+GTGVAW +RSFE GI H++ +LG G+DGAIDILLVG DSRTDAH Sbjct 8 RAVSVALAVAIVIGTGVAWGKIRSFEAGINHINPIALGGEGEDGAIDILLVGSDSRTDAH 67 Query 75 GNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKING 134 GNPLS +E A L AGDE +TNTDTIILIR+PNNG+SATAISIPRDSYV APG+GK KING Sbjct 68 GNPLSDQERAMLRAGDEVSTNTDTIILIRIPNNGESATAISIPRDSYVEAPGIGKMKING 127 Query 135 VYGQTRETKRAGLV-QAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFA 193 VYG + LV Q G P EA AGRE LIKTVA+LTGVTVDHYAEIGLLGFA Sbjct 128 VYGSVHLEEMKELVEQQGVDPAEAEPEAQAAGREELIKTVANLTGVTVDHYAEIGLLGFA 187 Query 194 LIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQ 253 LI DALGGVDVCL PV+EPLSGADFPAG QKLNG QALSFVRQRHDLPRGDLDRV RQQ Sbjct 188 LITDALGGVDVCLNAPVWEPLSGADFPAGWQKLNGTQALSFVRQRHDLPRGDLDRVARQQ 247 Query 254 AVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFAT 313 A MA++AH VIS +TLSSP+TL LE AVQRSVVLS GWDIMDFV QLQKLA GNVAFAT Sbjct 248 AAMASMAHEVISSKTLSSPSTLSALESAVQRSVVLSEGWDIMDFVEQLQKLAAGNVAFAT 307 Query 314 IPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTD 373 IP+L+ AGWSDDGMQSVVRVDP +V+DWV LL++QDQGKT+EL Y+ +T V ND+D Sbjct 308 IPILEEAGWSDDGMQSVVRVDPTEVKDWVTSLLNDQDQGKTEELTYSNDQTVVEVYNDSD 367 Query 374 INGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVAD 433 +NGLAAAV+ VL+ KGFT G+VGNN+G V GSQVRAAKADD+GAQ VA +LGGL VV D Sbjct 368 VNGLAAAVAHVLTGKGFTQGNVGNNEGPKVAGSQVRAAKADDMGAQAVALDLGGLQVVED 427 Query 434 ASIAPGSVRVVLANDYSGPGSGLGGSDPNGV-VSPARAFNLGSADDTTPPPSPILTAGSD 492 S+ P +VRVVLA+DY+GPG+GL GSD + P+ + + PPPSPI+TAGSD Sbjct 428 PSVPPDTVRVVLADDYTGPGAGLDGSDVTLMGADPSTSGVMSDTGAGVPPPSPIITAGSD 487 Query 493 APECIN 498 P+C+N Sbjct 488 DPKCVN 493 >gi|118470097|ref|YP_886195.1| LytR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171384|gb|ABK72280.1| transcriptional regulator, LytR family protein [Mycobacterium smegmatis str. MC2 155] Length=493 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/491 (71%), Positives = 398/491 (82%), Gaps = 7/491 (1%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAH 74 R+I+ A A A+VLGTGVAW+ VRSFE GI H+S+ +LG GG+DGAIDILLVG+DSRTDAH Sbjct 3 RSIAVAAASAVVLGTGVAWTQVRSFESGINHISSSALGEGGEDGAIDILLVGIDSRTDAH 62 Query 75 GNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKING 134 GNPLS EELATL AGD+ +TNTDTIIL+R+PNNG SATAISIPRDSYV APG GK KING Sbjct 63 GNPLSPEELATLRAGDDVSTNTDTIILVRIPNNGTSATAISIPRDSYVEAPGWGKMKING 122 Query 135 VYGQTRETKRAGLVQA-GASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFA 193 V+G + + LV+ G P A TEAGRE LI+TVADLTGVTVDHYAEIGLLGFA Sbjct 123 VFGDVKLDRMKQLVEVEGEDPAVAEPEATEAGREKLIETVADLTGVTVDHYAEIGLLGFA 182 Query 194 LIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQ 253 LI DALGGV+VCL EPVYEPLSGADFPAG QKLNGPQALSFVRQRH LPRGDLDRV RQQ Sbjct 183 LITDALGGVNVCLNEPVYEPLSGADFPAGWQKLNGPQALSFVRQRHGLPRGDLDRVTRQQ 242 Query 254 AVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFAT 313 A MA+LAH IS +TLSSPATL RL+ AVQRSVV+S GWDIMDFV QLQ LAGGNVAFAT Sbjct 243 AFMASLAHEAISSKTLSSPATLGRLQDAVQRSVVISDGWDIMDFVSQLQNLAGGNVAFAT 302 Query 314 IPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTD 373 IP+L GWSDDGMQSVVRVDP+QV+DWV GLL +QD+GKT+ELAY+PAKTT V+N TD Sbjct 303 IPILREDGWSDDGMQSVVRVDPQQVRDWVTGLLQDQDEGKTEELAYSPAKTTVEVLNGTD 362 Query 374 INGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVAD 433 +NGLAA+VS+VL+ KGFT G GN++ V GSQV AA +DDLGAQ+VAK+LGGLPV D Sbjct 363 VNGLAASVSQVLTQKGFTPGDTGNHEDGPVAGSQVLAATSDDLGAQEVAKDLGGLPVHED 422 Query 434 ASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPS------PIL 487 +SI GSVRVVL +DY+GPGSGL G+ V PA + G AD ++ + PIL Sbjct 423 SSIPAGSVRVVLGDDYTGPGSGLDGNPALSSVDPASSSASGYADGSSEDETPPPPPSPIL 482 Query 488 TAGSDAPECIN 498 TAG++ P+C+N Sbjct 483 TAGANDPQCVN 493 >gi|169630694|ref|YP_001704343.1| hypothetical protein MAB_3614 [Mycobacterium abscessus ATCC 19977] gi|169242661|emb|CAM63689.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=515 Score = 544 bits (1402), Expect = 1e-152, Method: Compositional matrix adjust. Identities = 292/487 (60%), Positives = 359/487 (74%), Gaps = 11/487 (2%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSL-GHGG--DDGAIDILLVGLDSRT 71 R I+T AVA+++ TG AW + + + I P L G+ G DDGAIDIL+VG+DSR+ Sbjct 37 RGIATLAAVAVMVITGAAWGKIGNIDPNIARFDLPGLFGNAGKPDDGAIDILMVGVDSRS 96 Query 72 DAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTK 131 DAHGNPLS EEL+ L AGDE ATNTDTIILIR+PNNGKSATAISIPRDSYV P K K Sbjct 97 DAHGNPLSQEELSMLRAGDETATNTDTIILIRIPNNGKSATAISIPRDSYVTIPDGSKGK 156 Query 132 INGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLG 191 INGVYG+ +E R V++G + A +AGR ALI+TV LTGVTVD YAE+ +LG Sbjct 157 INGVYGEAKENDRQKRVESGETLEAAERESVDAGRSALIQTVGRLTGVTVDRYAEVSMLG 216 Query 192 FALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVR 251 F L+ DALGGV+VCL E VYEP+SGADFPAG Q L+GP ALSFVRQRHDLPRGDLDRVVR Sbjct 217 FVLMTDALGGVNVCLNEAVYEPMSGADFPAGPQTLDGPNALSFVRQRHDLPRGDLDRVVR 276 Query 252 QQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAF 311 QQ VM++LAH +SG TL++ TL +L A+ R+VVLS GWD+MDF++QLQKL+GGNVAF Sbjct 277 QQVVMSSLAHSALSGGTLTNTTTLGKLRDAITRTVVLSQGWDVMDFIQQLQKLSGGNVAF 336 Query 312 ATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVND 371 ATIP+L GW++DG QSVV+VDP QV+ WV GLL +Q QGKT+E Y+ +TTA+VVN+ Sbjct 337 ATIPILREDGWTEDGTQSVVKVDPDQVRSWVSGLLDQQAQGKTEEATYSKDQTTADVVNE 396 Query 372 TDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVV 431 T INGLAAAVS++L KGFT G VGNN+ DHV SQV+AA+ DD+GA+ VA+ L GLPVV Sbjct 397 TQINGLAAAVSELLVGKGFTAGKVGNNESDHVGSSQVQAAQQDDVGAKAVAEAL-GLPVV 455 Query 432 ADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPILTAGS 491 IA +VRVVL+ DY GPGSG +PA + + +D PPP + + Sbjct 456 EKQGIAEHTVRVVLSKDYQGPGSGR-------ETTPAASETGSTEEDAPPPPPSPIFTAA 508 Query 492 DAPECIN 498 + P C+N Sbjct 509 NGPRCVN 515 >gi|339296094|gb|AEJ48205.1| hypothetical protein CCDC5079_3015 [Mycobacterium tuberculosis CCDC5079] Length=307 Score = 540 bits (1392), Expect = 2e-151, Method: Compositional matrix adjust. Identities = 271/272 (99%), Positives = 272/272 (100%), Gaps = 0/272 (0%) Query 1 VMSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI 60 +MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI Sbjct 1 MMSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAI 60 Query 61 DILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS 120 DILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS Sbjct 61 DILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDS 120 Query 121 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT 180 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT Sbjct 121 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT 180 Query 181 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD 240 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD Sbjct 181 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD 240 Query 241 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSP 272 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSP Sbjct 241 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSP 272 >gi|54026612|ref|YP_120854.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54018120|dbj|BAD59490.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=495 Score = 487 bits (1254), Expect = 2e-135, Method: Compositional matrix adjust. Identities = 263/472 (56%), Positives = 331/472 (71%), Gaps = 16/472 (3%) Query 29 TGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAEELATLHA 88 TG AW SV + I + LG G DGA+DILLVG+DSRTDAHG+PLS +E A LHA Sbjct 38 TGFAWHSVDALIGNIERIDDLGLG-GARDGAVDILLVGVDSRTDAHGDPLSEDEKAMLHA 96 Query 89 GDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAGLV 148 GDE TNTDTI+L+RVPN+G SATAIS+PRDSYV PGLGK KIN YG T+ET+R L+ Sbjct 97 GDEVGTNTDTIVLVRVPNDGSSATAISLPRDSYVDIPGLGKGKINSAYGVTKETERLKLL 156 Query 149 QAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCLKE 208 G S EA T AGR+ALIKTVADLTG+TVDHYAE+ LLGF L+ DA+GGV+VCL Sbjct 157 DQGVSEAEAEKRSTRAGRQALIKTVADLTGITVDHYAEVSLLGFVLLTDAVGGVEVCLNN 216 Query 209 PVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMAALAHRVISGQT 268 PV E +SGA FPAGRQ+L+GPQALSFVRQRHDLPRGDLDR+VRQQ MA L ++V+S +T Sbjct 217 PVDEWMSGARFPAGRQRLDGPQALSFVRQRHDLPRGDLDRIVRQQVFMAQLVNQVLSAKT 276 Query 269 LSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAGWSDDGMQ 328 LS+P L L AV R+VVL WD++ F++QL+ L+GG V F TIPV D G + +G + Sbjct 277 LSNPNKLNELSDAVGRTVVLDENWDVLAFLQQLRDLSGGQVKFETIPVADLNGMTSNG-E 335 Query 329 SVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDINGLAAAVSKVLSSK 388 SVVRV+P++V+ +V GL+ E D + P+ T +V N + + GLA VS+ L+ K Sbjct 336 SVVRVEPKEVKSYVAGLVGE-DADEPQSPRVDPSTVTVDVFNASSVGGLAGQVSQALAGK 394 Query 389 GFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLAND 448 GF G VGN G V GS+V AA + GA+ VA+ LGGL VVAD+S++P +V VVLA+D Sbjct 395 GFQPGRVGNYSGAGVTGSRVLAADTSNPGAEAVAEALGGLTVVADSSMSPDAVSVVLASD 454 Query 449 YSGPGSGLGGSDPNGVVSPARAFNL-GSADDTTP-PPSPILTAGSDAPECIN 498 YSGPGS G F+ G++ TP PP+P + AG + P+C+N Sbjct 455 YSGPGSAAGS-----------LFDFSGTSTSATPVPPAPPIDAGQNGPKCVN 495 >gi|325675652|ref|ZP_08155336.1| LytR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325553623|gb|EGD23301.1| LytR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length=492 Score = 474 bits (1220), Expect = 1e-131, Method: Compositional matrix adjust. Identities = 261/478 (55%), Positives = 318/478 (67%), Gaps = 19/478 (3%) Query 29 TGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAEELATLHA 88 TG AW SV S + + LG G DGA+DILLVG DSRTDAHGNPLS EL +L A Sbjct 26 TGFAWRSVDSLRSNLATIGGLGLG-GAKDGAVDILLVGTDSRTDAHGNPLSQAELDSLRA 84 Query 89 GDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAGLV 148 G+E A+NTDTIIL+RVPN+G SATAISIPRD+YV PGLGK+KIN YG T+E +R L+ Sbjct 85 GEEVASNTDTIILVRVPNDGSSATAISIPRDAYVDVPGLGKSKINAAYGATKEAERQKLI 144 Query 149 QAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCLKE 208 + G S A ++AGREALIK+VA+LTGVTVDHYAEIGLLGF L+ DA+GGVDVCL Sbjct 145 EDGESEKTAENESSQAGREALIKSVANLTGVTVDHYAEIGLLGFVLLTDAVGGVDVCLNA 204 Query 209 PVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMAALAHRVISGQT 268 V EPLSGA FPAG Q L+GP ALSFVRQRH+LPRGDLDR+VRQQ MA+L V+S +T Sbjct 205 AVDEPLSGAKFPAGEQTLSGPNALSFVRQRHNLPRGDLDRIVRQQVFMASLVREVLSAKT 264 Query 269 LSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAGWSDDGMQ 328 L+SP L +L AV+RSVVL S WDI++F QLQ LAGG V F TIPV+D G +D G + Sbjct 265 LTSPGKLNQLSAAVKRSVVLDSDWDIIEFATQLQDLAGGKVRFETIPVVDINGMTDYG-E 323 Query 329 SVVRVDPRQVQDWVVGLLHEQ----DQGKTDELAYTP----AKTTANVVNDTDINGLAAA 380 S+V+VDP+ V+ +V L E+ D + P + T +V ND+ I+GLA+ Sbjct 324 SIVQVDPKAVRKYVASLAGEEPAEDDTTTSTTPTTMPDIDVSSVTVDVANDSSISGLAST 383 Query 381 VSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGS 440 V+ L +GF G VGNN G V S V A K+D Q V+ LGGLP+ AD+S+A G Sbjct 384 VAATLEDEGFGLGDVGNNTGKSVSRSTVFANKSDSQAGQAVSVTLGGLPIEADSSLASGE 443 Query 441 VRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPILTAGSDAPECIN 498 VRVVLA DY P GS GVV + T P P + AG+ P C+N Sbjct 444 VRVVLAGDYKSPAGSSTGS--GGVVDAGTS-------PTPVEPGPAIDAGNKGPHCVN 492 >gi|312140709|ref|YP_004008045.1| LytR family transcripiotnal regulator [Rhodococcus equi 103S] gi|311890048|emb|CBH49366.1| putative LytR family transcriptional regulator [Rhodococcus equi 103S] Length=492 Score = 474 bits (1219), Expect = 2e-131, Method: Compositional matrix adjust. Identities = 261/478 (55%), Positives = 318/478 (67%), Gaps = 19/478 (3%) Query 29 TGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAEELATLHA 88 TG AW SV S + + LG G DGA+DILLVG DSRTDAHGNPLS EL +L A Sbjct 26 TGFAWRSVDSLRSNLATIGGLGLG-GAKDGAVDILLVGTDSRTDAHGNPLSQAELDSLRA 84 Query 89 GDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAGLV 148 G+E A+NTDTIIL+RVPN+G SATAISIPRD+YV PGLGK+KIN YG T+E +R L+ Sbjct 85 GEEVASNTDTIILVRVPNDGSSATAISIPRDAYVDVPGLGKSKINAAYGATKEAERQKLI 144 Query 149 QAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCLKE 208 + G S A ++AGREALIK+VA+LTGVTVDHYAEIGLLGF L+ DA+GGVDVCL Sbjct 145 EDGESEKTAENESSQAGREALIKSVANLTGVTVDHYAEIGLLGFVLLTDAVGGVDVCLNA 204 Query 209 PVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMAALAHRVISGQT 268 V EPLSGA FPAG Q L+GP ALSFVRQRH+LPRGDLDR+VRQQ MA+L V+S +T Sbjct 205 AVDEPLSGAKFPAGEQTLSGPNALSFVRQRHNLPRGDLDRIVRQQVFMASLVREVLSAKT 264 Query 269 LSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAGWSDDGMQ 328 L+SP L +L AV+RSVVL S WDI++F QLQ LAGG V F TIPV+D G +D G + Sbjct 265 LTSPGKLNQLSAAVKRSVVLDSDWDIIEFATQLQDLAGGKVRFETIPVVDINGMTDYG-E 323 Query 329 SVVRVDPRQVQDWVVGLLHEQ----DQGKTDELAYTP----AKTTANVVNDTDINGLAAA 380 S+V+VDP+ V+ +V L E+ D + P + T +V ND+ I+GLA+ Sbjct 324 SIVQVDPKAVRKYVASLAGEEPAEDDTTTSTTPTTMPDIDVSSVTVDVANDSSISGLAST 383 Query 381 VSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGS 440 V+ L +GF G VGNN G V S V A K+D Q V+ LGGLP+ AD+S+A G Sbjct 384 VAATLEDEGFGLGDVGNNTGKSVSRSTVFANKSDSQAGQAVSVTLGGLPIEADSSLASGE 443 Query 441 VRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPILTAGSDAPECIN 498 VRVVLA DY P GS GVV + T P P + AG+ P C+N Sbjct 444 VRVVLAGDYKRPAGSSTGS--GGVVDAGTS-------PTPVEPGPAIDAGNKGPHCVN 492 >gi|229489555|ref|ZP_04383418.1| transcriptional regulator, LytR family [Rhodococcus erythropolis SK121] gi|229323652|gb|EEN89410.1| transcriptional regulator, LytR family [Rhodococcus erythropolis SK121] Length=510 Score = 457 bits (1177), Expect = 2e-126, Method: Compositional matrix adjust. Identities = 261/475 (55%), Positives = 325/475 (69%), Gaps = 8/475 (1%) Query 29 TGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAEELATLHA 88 TG AW V S + + S GG DGAIDIL+VG DSRTDAHGNPLS EL +L A Sbjct 39 TGFAWRGVDSLRNSLATASG-LGLGGGKDGAIDILMVGTDSRTDAHGNPLSQSELDSLRA 97 Query 89 GDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAGLV 148 G+E A+NTDTIILIRVPN+G SATAISIPRD+YV PG+G +KIN +G T+ET+R LV Sbjct 98 GEEVASNTDTIILIRVPNDGSSATAISIPRDAYVNVPGIGMSKINAAFGATKETERLKLV 157 Query 149 QAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCLKE 208 G+S ++A TEAGR ALI VA+LTG+TVDHYAE+GLLGF L+ +A+GGVDVCL Sbjct 158 NNGSSDSDADKKSTEAGRTALIGAVANLTGITVDHYAEVGLLGFVLLTNAVGGVDVCLNA 217 Query 209 PVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMAALAHRVISGQT 268 PV EP+SGA+F AG+Q L+G ALSFVRQRHDLPRGDLDR+VRQQ MA+L +V+S +T Sbjct 218 PVDEPMSGANFAAGKQTLDGADALSFVRQRHDLPRGDLDRIVRQQVFMASLVSKVLSAKT 277 Query 269 LSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAGWSDDGMQ 328 LS P L +L AVQRSVV+ WDI++F +QLQ LAGG V F TIPVLD G +D G + Sbjct 278 LSDPGKLSQLTSAVQRSVVIDDDWDIIEFAKQLQNLAGGKVQFETIPVLDINGMTDYG-E 336 Query 329 SVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTP-----AKTTANVVNDTDINGLAAAVSK 383 S+V+VDP+ V+ ++ GL+ D +DE + P + T +V N +DI GLA+ VS+ Sbjct 337 SIVKVDPKAVKKYIAGLVG-ADSEDSDETSEAPTTVNASSITVDVANASDIAGLASGVSE 395 Query 384 VLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRV 443 LS+ G+ G VGNN G V S V A ADD A VA+ LGGL V AD+S++ G VRV Sbjct 396 ALSALGYKQGQVGNNTGSDVTESTVFAKSADDDAALAVAEALGGLTVKADSSLSSGKVRV 455 Query 444 VLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPILTAGSDAPECIN 498 V+A DYSGP S S P G S + + T PP P + A S+ P C+N Sbjct 456 VIAEDYSGPQSADAVSPPEGATSTTESSSTTETSPTPAPPGPPIDAASNGPRCVN 510 >gi|226305633|ref|YP_002765593.1| LytR family regulatory protein [Rhodococcus erythropolis PR4] gi|226184750|dbj|BAH32854.1| putative LytR family regulatory protein [Rhodococcus erythropolis PR4] Length=510 Score = 452 bits (1163), Expect = 6e-125, Method: Compositional matrix adjust. Identities = 257/474 (55%), Positives = 323/474 (69%), Gaps = 6/474 (1%) Query 29 TGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAEELATLHA 88 TG AW V S + + S GG DGAIDIL+VG DSRTDAHGNPLS EL +L A Sbjct 39 TGFAWRGVDSLRNSLATASG-LGLGGGKDGAIDILMVGTDSRTDAHGNPLSQSELDSLRA 97 Query 89 GDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAGLV 148 G+E A+NTDTIILIRVPN+G SATAISIPRD+YV PG+G +KIN +G T+ET+R LV Sbjct 98 GEEVASNTDTIILIRVPNDGSSATAISIPRDAYVNVPGIGMSKINAAFGATKETERLKLV 157 Query 149 QAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCLKE 208 G+S ++A TEAGR ALI V +LTG+TVDHYAE+GLLGF L+ +A+GGVDVCL Sbjct 158 NNGSSDSDADKKSTEAGRTALIGAVGNLTGITVDHYAEVGLLGFVLLTNAVGGVDVCLNA 217 Query 209 PVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMAALAHRVISGQT 268 PV EP+SGA+F AG+Q L+G ALSFVRQRHDLPRGDLDR+VRQQ MA+L +V+S +T Sbjct 218 PVDEPMSGANFAAGKQTLDGADALSFVRQRHDLPRGDLDRIVRQQVFMASLVSKVLSAKT 277 Query 269 LSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAGWSDDGMQ 328 LS P L +L AVQRSVV+ WDI++F +QLQ LAGG V F TIPVLD G +D G + Sbjct 278 LSDPGKLSQLTSAVQRSVVIDDDWDIIEFAKQLQNLAGGKVQFETIPVLDINGMTDYG-E 336 Query 329 SVVRVDPRQVQDWVVGLL--HEQDQGKTDELAYT--PAKTTANVVNDTDINGLAAAVSKV 384 S+V+VDP+ V+ ++ GL+ +D +T E T + T +V N +D+ GLA+ VS+ Sbjct 337 SIVKVDPKAVKKYIAGLVGADSEDSEETSEAPTTVNASSITVDVANASDVAGLASGVSEA 396 Query 385 LSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVV 444 LS+ G+ G VGNN G V S V A ADD A VA+ LGGL V AD+S++ G VRVV Sbjct 397 LSALGYKQGQVGNNTGSDVSESTVFAKSADDDAALAVAEALGGLTVKADSSLSSGKVRVV 456 Query 445 LANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPILTAGSDAPECIN 498 +A DYSGP S S G + + + T PP P + A S+ P C+N Sbjct 457 IAEDYSGPQSADAVSPSEGAATTTESASTTETSPTPAPPGPPIDAASNGPRCVN 510 >gi|226365777|ref|YP_002783560.1| LytR family regulatory protein [Rhodococcus opacus B4] gi|226244267|dbj|BAH54615.1| putative LytR family regulatory protein [Rhodococcus opacus B4] Length=510 Score = 452 bits (1162), Expect = 9e-125, Method: Compositional matrix adjust. Identities = 251/447 (57%), Positives = 307/447 (69%), Gaps = 11/447 (2%) Query 15 RAISTALAVAIVLG---TGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRT 71 R I A+AV VL TG AW S+ S + + LG D GA+DIL+VG DSRT Sbjct 17 RPIHIAVAVLSVLALVVTGFAWRSIDSLRNNLATAGGLGLGGSAD-GAVDILMVGTDSRT 75 Query 72 DAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTK 131 DAHGNPLS EEL +L AG+E A+NTDTI+L+RVPN+G SATAISIPRDSYV PG+G +K Sbjct 76 DAHGNPLSQEELDSLRAGEEVASNTDTIVLVRVPNDGSSATAISIPRDSYVDVPGIGMSK 135 Query 132 INGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLG 191 IN YG T+ET+R LV+ GA+ EA T+AGREALI++VADLTG+TVDHYAE+GLLG Sbjct 136 INAAYGATKETERLKLVEDGATDKEAEEESTKAGREALIQSVADLTGITVDHYAEVGLLG 195 Query 192 FALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVR 251 F L+ +A+GGVDVCL EPV E +SGA FPAG Q L G ALSFVRQRHDLPRGDLDR+VR Sbjct 196 FVLLTNAVGGVDVCLNEPVDEDMSGAHFPAGEQTLKGADALSFVRQRHDLPRGDLDRIVR 255 Query 252 QQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAF 311 QQ MA+L +V+S +TLS P L L AVQRSVVL WDI++F QLQ LAGG V F Sbjct 256 QQVFMASLVGKVLSAKTLSDPGKLNELSGAVQRSVVLDDDWDIIEFATQLQDLAGGKVQF 315 Query 312 ATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHE--QDQGKTDELAYTP----AKTT 365 TIPV D G +D G +S+V V P+ V+ +V GL+ E D T + TP + T Sbjct 316 ETIPVADLNGMTDYG-ESIVEVKPKDVKKYVAGLVGEGPTDSEDTTTKSETPDIDTSTVT 374 Query 366 ANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKEL 425 +V N +D+ GLA V+ L+S G+ G +GN G V + V A ADD A+ VA L Sbjct 375 VDVANASDVGGLANGVADALTSLGYGQGEIGNYTGKAVSETTVFAHSADDDSAKSVAAAL 434 Query 426 GGLPVVADASIAPGSVRVVLANDYSGP 452 GGLP D+++ GSVRVVLA+DY GP Sbjct 435 GGLPTDTDSALPRGSVRVVLASDYQGP 461 >gi|111023267|ref|YP_706239.1| LytR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110822797|gb|ABG98081.1| possible transcriptional regulator, LytR family protein [Rhodococcus jostii RHA1] Length=482 Score = 449 bits (1156), Expect = 4e-124, Method: Compositional matrix adjust. Identities = 246/429 (58%), Positives = 299/429 (70%), Gaps = 7/429 (1%) Query 29 TGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAEELATLHA 88 TG AW S+ S + + LG D GA+DIL+VG DSRTDAHGNPLS +EL +L A Sbjct 7 TGFAWRSIDSLRNNLATAGGLGLGGSAD-GAVDILMVGTDSRTDAHGNPLSQDELDSLRA 65 Query 89 GDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAGLV 148 G+E A+NTDTI+LIRVPN+G SATAISIPRDSYV PG+G +KIN YG T+ET+R LV Sbjct 66 GEEVASNTDTIVLIRVPNDGSSATAISIPRDSYVDVPGIGMSKINAAYGATKETERLELV 125 Query 149 QAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCLKE 208 + GA+ EA T+AGREALI++VADLTGVTVDHYAE+GLLGF L+ +A+GGVDVCL E Sbjct 126 EDGATDEEAEEESTKAGREALIQSVADLTGVTVDHYAEVGLLGFVLLTNAVGGVDVCLNE 185 Query 209 PVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMAALAHRVISGQT 268 PV E +SGA FPAG Q L G ALSFVRQRHDLPRGDLDR+VRQQ MA+L +V+S +T Sbjct 186 PVDEDMSGAHFPAGEQTLKGADALSFVRQRHDLPRGDLDRIVRQQVFMASLVGKVLSAKT 245 Query 269 LSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAGWSDDGMQ 328 LS P L L AVQRSVVL WDI++F QLQ LAGG V F TIPV D G +D G + Sbjct 246 LSDPGKLNELSGAVQRSVVLDDDWDIIEFATQLQDLAGGKVQFETIPVADLNGMTDYG-E 304 Query 329 SVVRVDPRQVQDWVVGLLHEQ----DQGKTDELAYTPAKT-TANVVNDTDINGLAAAVSK 383 S+V V P+ V+ +V GL+ E+ + T E A T T +V N +D+ GLA V+ Sbjct 305 SIVEVKPKDVKKYVAGLVGEEPTDSEDTTTSETPKIDASTVTVDVANASDVGGLANGVAD 364 Query 384 VLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRV 443 L+S G+ G VGN G V + V A ADD A+ VA LGGLP DA++ GSVRV Sbjct 365 ALTSLGYGQGEVGNYTGQSVSETTVFAHSADDDSAKAVAAALGGLPTDTDATLPEGSVRV 424 Query 444 VLANDYSGP 452 VL++DY GP Sbjct 425 VLSSDYQGP 433 >gi|343928005|ref|ZP_08767470.1| putative LytR family regulatory protein [Gordonia alkanivorans NBRC 16433] gi|343762013|dbj|GAA14396.1| putative LytR family regulatory protein [Gordonia alkanivorans NBRC 16433] Length=734 Score = 439 bits (1129), Expect = 5e-121, Method: Compositional matrix adjust. Identities = 241/485 (50%), Positives = 321/485 (67%), Gaps = 18/485 (3%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAH 74 RA+ +VA++L TG AW+++ E I + G DGA+DILLVG DSRTDA Sbjct 267 RALIAIASVAVLLCTGYAWNTMSDLETRITQLGG-LGLGGAKDGAVDILLVGTDSRTDAK 325 Query 75 GNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKING 134 GNPLS EE+ L +G+E ATNTDTI+L+R+P +G SATAISIPRDSYV PG+G +KIN Sbjct 326 GNPLSPEEIKLLRSGEEVATNTDTILLVRIPEDGSSATAISIPRDSYVHVPGIGMSKINA 385 Query 135 VYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFAL 194 YG TRE RA V+AG SP EA GT AGR+AL+ TVA+LTGV VDHYAE+GLLGF L Sbjct 386 AYGTTREGVRARAVEAGQSPEEAEKEGTLAGRKALVDTVANLTGVQVDHYAEVGLLGFVL 445 Query 195 IADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQA 254 + +A+GG+DVCL PV +PLSGA F G Q LNGP+ALSFVRQRH LPRGDLDR+ RQQA Sbjct 446 LTNAVGGIDVCLNAPVRDPLSGARFRKGVQTLNGPRALSFVRQRHGLPRGDLDRITRQQA 505 Query 255 VMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATI 314 MA+L +V+S TL+ P L ++ AV RS+V+ GW+I+ F QL+ L+GG V FATI Sbjct 506 FMASLTQKVLSAGTLTDPGKLSEMQNAVARSIVIDDGWNIISFAEQLKDLSGGRVKFATI 565 Query 315 PVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLL-HEQDQGKTDELAYTPAKTTANVVNDTD 373 P++ GWS+DG+QSVV VDP+ V+ + LL +Q G T + +VVN Sbjct 566 PIVTEQGWSEDGLQSVVEVDPQAVKTYTSDLLTPKQTGGDTQRGDF-----KVDVVNAGT 620 Query 374 INGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVAD 433 I+GL + V+ +L++KG+ +G + D V AK + A+ +AK+LGG+ VV D Sbjct 621 IDGLGSNVANILTNKGYQSGETSSGKADTK--DSVVYAKENGDAARLLAKDLGGVKVVED 678 Query 434 ASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPILTAGSDA 493 +A ++V+L N Y+GPG GLG + +PA + +G+ P +TAG++ Sbjct 679 PKLADDRLKVILTNTYAGPG-GLGDTGDQTDNTPA-SERVGNK-------RPPITAGNEG 729 Query 494 PECIN 498 P C+N Sbjct 730 PMCVN 734 >gi|262201793|ref|YP_003273001.1| cell envelope-like function transcriptional attenuator [Gordonia bronchialis DSM 43247] gi|262085140|gb|ACY21108.1| cell envelope-related function transcriptional attenuator, LytR/CpsA family [Gordonia bronchialis DSM 43247] Length=676 Score = 439 bits (1128), Expect = 7e-121, Method: Compositional matrix adjust. Identities = 254/490 (52%), Positives = 320/490 (66%), Gaps = 30/490 (6%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAH 74 R + ++VA+++ TG AW+S+ S ++ I +S LG G +DGA+DILLVG DSRTDA Sbjct 211 RGLVALVSVAVLMCTGYAWNSLNSLQNKINQISGLGLG-GAEDGAVDILLVGTDSRTDAK 269 Query 75 GNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKING 134 GNPLSA+E L AGDE ATNTDTI+LIR+PN+G SATAISIPRDSYV PG+G +KIN Sbjct 270 GNPLSADEQRMLRAGDEVATNTDTILLIRIPNDGSSATAISIPRDSYVQVPGIGMSKINA 329 Query 135 VYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFAL 194 YG TRE RA V AG S +A A GT AGR+ALI TVA LTGV VDHYAE+GLLGF L Sbjct 330 AYGATREGVRAREVSAGTSEKKADADGTFAGRKALIDTVAGLTGVHVDHYAEVGLLGFVL 389 Query 195 IADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQA 254 + A+GGVDVCLK +P++GA F AGRQ L+GP+ALSFVRQRH LPRGDLDR+ RQQA Sbjct 390 LTKAVGGVDVCLKAASVDPVTGARFRAGRQTLSGPRALSFVRQRHGLPRGDLDRITRQQA 449 Query 255 VMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATI 314 MA+L +++S TL+ P L LE+AV RSVV+ WD++ F QL+ L+GG V FATI Sbjct 450 YMASLTQKILSANTLTDPGKLSDLEEAVSRSVVIDDDWDVVSFAEQLKDLSGGRVKFATI 509 Query 315 PVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDI 374 PV+ GWSDDG QSVVRVDP V + GLL+ D+ Y T +VVN + Sbjct 510 PVVTEQGWSDDGQQSVVRVDPAAVAKFTDGLLNP-DRTNAQRSDY-----TVDVVNAGTV 563 Query 375 NGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADA 434 +GLA+ V+ +L++KGF GS D V A D+ GA+ +A++LGG V D Sbjct 564 DGLASNVANILTNKGFQEGSTSTQPADTR--DSVVLAHDDNDGARLLARDLGGARVQVDP 621 Query 435 SIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPS------PILT 488 S+ ++VVL N YSGPGS + GS +D P P +T Sbjct 622 SLDEHRLKVVLTNTYSGPGS---------------ISDTGSQEDNRPASERVGNNRPPIT 666 Query 489 AGSDAPECIN 498 AG+D P C+N Sbjct 667 AGTDGPTCVN 676 >gi|213964851|ref|ZP_03393050.1| transcriptional regulator, LytR family [Corynebacterium amycolatum SK46] gi|213952387|gb|EEB63770.1| transcriptional regulator, LytR family [Corynebacterium amycolatum SK46] Length=528 Score = 427 bits (1099), Expect = 2e-117, Method: Compositional matrix adjust. Identities = 237/451 (53%), Positives = 294/451 (66%), Gaps = 32/451 (7%) Query 21 LAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGD-------DGAIDILLVGLDSRTDA 73 L+ I++ + V W ++ D +LG GGD DGA DILLVG DSRTDA Sbjct 39 LSAIILVISAVGWWTLGRTTD--------NLGSGGDFGLGNEKDGATDILLVGSDSRTDA 90 Query 74 HGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKIN 133 GNPL+ EE+ L AGDEEATNTDTII+IRVP +G SATAISIPRD+YV LG TKIN Sbjct 91 QGNPLTPEEVELLRAGDEEATNTDTIIVIRVPADGSSATAISIPRDTYVHTNRLGNTKIN 150 Query 134 GVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFA 193 GVYG T++ L +GASP + TEAGR ALI+T++DL+G+TVDHYAE+GLLGF Sbjct 151 GVYGNTKQMVEEELAGSGASPEDIERRSTEAGRRALIETISDLSGITVDHYAEVGLLGFV 210 Query 194 LIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQ 253 L+ DA+GGVDVCL E VY+ SGADFPAG Q L G ALSFVRQRH LPRGDLDR+ RQQ Sbjct 211 LLTDAIGGVDVCLNEAVYDEFSGADFPAGSQTLKGADALSFVRQRHGLPRGDLDRITRQQ 270 Query 254 AVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFAT 313 MA+ ++++ TLS+PA L L AVQRSVVL WD+ F Q+Q L+GGNV F T Sbjct 271 VFMASFTNKLLGAGTLSNPAKLSELGNAVQRSVVLDDNWDVTGFATQMQGLSGGNVKFET 330 Query 314 IPV--LDGAGWSDDGMQSVVRVDPRQVQDWVVGLL---------HEQDQGKTDELAYTPA 362 IPV +DG G D +SVV +D QV + LL E+D+ K D A A Sbjct 331 IPVTSIDGVG---DYGESVVTIDKGQVHQYFETLLGTKEEEAPTKEEDEKKADPNA---A 384 Query 363 KTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVA 422 +TT +V N T I GLA+ VS L+ KG+T G VGN + V SQ+ AA +D AQ ++ Sbjct 385 ETTVSVYNATGIEGLASGVSGFLTEKGYTQGEVGNAEFAGVASSQINAADPEDPAAQAIS 444 Query 423 KELGGLPVVADASIAPGSVRVVLANDYSGPG 453 + LGG+P+V D + P + V +A DY GPG Sbjct 445 EALGGVPIVHDPYLDPHHISVTIAGDYEGPG 475 >gi|336326286|ref|YP_004606252.1| LytR DNA-binding transcription regulator [Corynebacterium resistens DSM 45100] gi|336102268|gb|AEI10088.1| LytR DNA-binding transcription regulator [Corynebacterium resistens DSM 45100] Length=560 Score = 424 bits (1091), Expect = 1e-116, Method: Compositional matrix adjust. Identities = 231/450 (52%), Positives = 305/450 (68%), Gaps = 10/450 (2%) Query 12 RTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRT 71 R AR + A++ A++ TGV ++++ + D + + LG+ DGA DILLVG+DSRT Sbjct 28 RPARGVLAAVSAALLAFTGVGYATIGNLNDDLAEANNLDLGNS-PDGATDILLVGVDSRT 86 Query 72 DAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTK 131 DA GNPLS E+ L AG+E+ATNTDT+ILIRVPN+G SATA+S+PRD+YV P G K Sbjct 87 DAKGNPLSQREIDMLRAGEEQATNTDTMILIRVPNDGSSATAVSLPRDTYVKTPDQGNMK 146 Query 132 INGVYGQTRETKRAGLVQAGAS-PTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLL 190 +NGVYG + K+ L Q G S ++ TEAGR+ALI TVADLTG+TVDHYAEIGLL Sbjct 147 LNGVYGTAKFEKQQALEQGGESDKSKIDRDSTEAGRKALISTVADLTGITVDHYAEIGLL 206 Query 191 GFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVV 250 GF L+ DA+GGVDVCL + V EPLSGA FP G+Q+L+GP ALSFVRQRH+LPRGDLDR+ Sbjct 207 GFVLLTDAVGGVDVCLNKAVDEPLSGAKFPKGQQRLSGPDALSFVRQRHELPRGDLDRIT 266 Query 251 RQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVA 310 RQQA MA+L +++S +TL++P+ + ++ AVQRSVVL GWD+M Q+Q L+GGNV Sbjct 267 RQQAYMASLTSQILSSKTLTNPSAISKINNAVQRSVVLDEGWDVMGLATQMQNLSGGNVK 326 Query 311 FATIPVLDGAGWSDDGMQSVVRVDPRQVQ---DWVVGLLHEQDQGKTDELA----YTPAK 363 F TIPV G D+G +S+V V+ ++V D ++G E KT+E Y P Sbjct 327 FQTIPVTSIDGTGDNG-ESIVTVNTKKVHGFFDDLLGSKEENQPEKTEEKKALTDYKPED 385 Query 364 TTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAK 423 T +V N ++I GLA VSK+ + G+ G VGN+ V SQV A +D A+ +AK Sbjct 386 YTVSVSNASEIGGLAGRVSKLTTDYGYKKGKVGNSPQAGVSESQVNAKDENDPAARALAK 445 Query 424 ELGGLPVVADASIAPGSVRVVLANDYSGPG 453 +LGGL VV D S+ + V L+ YSGPG Sbjct 446 QLGGLKVVEDPSLGDKELSVTLSGTYSGPG 475 >gi|333921474|ref|YP_004495055.1| LytR family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] gi|333483695|gb|AEF42255.1| LytR family transcriptional regulator [Amycolicicoccus subflavus DQS3-9A1] Length=492 Score = 421 bits (1082), Expect = 1e-115, Method: Compositional matrix adjust. Identities = 245/491 (50%), Positives = 306/491 (63%), Gaps = 22/491 (4%) Query 21 LAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSA 80 L+V+++L TG AW SF + + SLG+G +DGAIDILLVG+DSRTDAHG+ LS Sbjct 11 LSVSVLLITGFAWKQFDSFSSRLATAAGLSLGNG-EDGAIDILLVGIDSRTDAHGDELSD 69 Query 81 EELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAP---------GLGKTK 131 EEL L AGD + TNTDTIILIR+P +G SA A SIPRDSYV P K K Sbjct 70 EELEQLRAGDVDGTNTDTIILIRIPEDGGSAAAFSIPRDSYVEIPDDVPGKDWPSNRKVK 129 Query 132 INGVYGQTRETKRAGLVQ-AGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLL 190 IN V+G TR + LV+ G S EA T AGREAL+ TVA+LT +TVDHYAEIGLL Sbjct 130 INSVFGSTRHQELVRLVEREGMSHEEAEPRATAAGREALVSTVAELTDITVDHYAEIGLL 189 Query 191 GFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVV 250 GF L+ DA+GGV+VCL V EP SGA+FPAGRQ L+G ALSFVRQR LP D+ R+ Sbjct 190 GFILLTDAVGGVEVCLNNAVNEPKSGANFPAGRQTLDGADALSFVRQREGLPGMDIGRIH 249 Query 251 RQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVA 310 RQQ MA+LA RV+S Q L++P L RL QA+QRSVVL S WDI+ F +Q Q LA G+V Sbjct 250 RQQVFMASLAQRVLSTQVLTNPTALNRLSQAIQRSVVLDSEWDILGFAKQFQGLAVGDVQ 309 Query 311 FATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLL---HEQDQGKTDELAYTPAKTTAN 367 F TIPV+ WS DGMQSVV +DP QV++ + +L E ++ + + ++ T + Sbjct 310 FETIPVVSMNSWSTDGMQSVVEIDPDQVRERIAEVLATEPEPEEEAVPDFGFDASEVTVS 369 Query 368 VVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGG 427 V N + I GLA VS L+ GF+ G VGN G P S+V A A AQ +A+ LGG Sbjct 370 VANASFIEGLATRVSDELNRVGFSEGEVGNWLGRPTPQSKVITADASSEAAQAIAEHLGG 429 Query 428 LPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPIL 487 L + D S+ ++VVL Y GPG+ P V A F G D PPP + Sbjct 430 LAIEQDTSLEKNQIQVVLTTRYDGPGA----EPPPDSVEAAEQFVAGEGD--APPPP--M 481 Query 488 TAGSDAPECIN 498 TA + P CI+ Sbjct 482 TADNPGPPCID 492 >gi|334563549|ref|ZP_08516540.1| hypothetical protein CbovD2_03167 [Corynebacterium bovis DSM 20582] Length=563 Score = 420 bits (1079), Expect = 4e-115, Method: Compositional matrix adjust. Identities = 232/447 (52%), Positives = 292/447 (66%), Gaps = 14/447 (3%) Query 20 ALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLS 79 AL V +++ G A+S++ + + LG D GA DILLVG+DSR DA G PLS Sbjct 50 ALCVVLLIAGGYAYSTIGRLGGDLAQANGLDLGSHAD-GATDILLVGIDSRKDAKGKPLS 108 Query 80 AEELATLHAGDEE-ATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQ 138 EE+ L AGDEE ATNTDT+ILIRVPN+G SATA+S+PRD+Y+ LG TK+N VYG Sbjct 109 QEEIDMLWAGDEEDATNTDTMILIRVPNDGSSATAVSLPRDTYIHTQDLGNTKLNAVYGT 168 Query 139 TRETKRAGLVQAGASPTEAAAA-GTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIAD 197 + K L AG + E TE GR+AL+ V++LTG+TVDHYAE+GLLGF L+ D Sbjct 169 AKYEKTQKLASAGITDEERVEKDSTETGRKALVSAVSNLTGITVDHYAEVGLLGFVLLTD 228 Query 198 ALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMA 257 A+GGVDVCL PV + SGA FPAGRQ L+GP ALSFVRQRH LPRGDLDR+ RQQA MA Sbjct 229 AVGGVDVCLNNPVDDDFSGAHFPAGRQTLSGPDALSFVRQRHGLPRGDLDRITRQQAYMA 288 Query 258 ALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVL 317 +L +++S +TL+ P L + QAVQRSV L SGWD+M Q+Q L+GGNV F TIPV Sbjct 289 SLTSKILSSRTLTDPGKLGDINQAVQRSVTLDSGWDVMGLAGQMQNLSGGNVTFQTIPVT 348 Query 318 DGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELA----------YTPAKTTAN 367 G D+G +SVV VD RQV + LL + D + A + A TT Sbjct 349 SIDGVGDNG-ESVVTVDTRQVHSFFRTLLGDDDTDASATSATPSDTEPIPPFDAAATTVT 407 Query 368 VVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGG 427 V+N ++ GLAA+VS +L+ +GF TG VGN V SQV AA D A+ +A+ LGG Sbjct 408 VLNAGEVPGLAASVSDLLAGQGFATGEVGNRTETGVSESQVNAADTSDPAARAIARALGG 467 Query 428 LPVVADASIAPGSVRVVLANDYSGPGS 454 LPVV D S+APG V V L+ Y+GPG+ Sbjct 468 LPVVEDPSLAPGQVSVTLSGTYTGPGA 494 >gi|260577926|ref|ZP_05845856.1| LytR family transcriptional regulator [Corynebacterium jeikeium ATCC 43734] gi|258603946|gb|EEW17193.1| LytR family transcriptional regulator [Corynebacterium jeikeium ATCC 43734] Length=555 Score = 418 bits (1075), Expect = 1e-114, Method: Compositional matrix adjust. Identities = 231/453 (51%), Positives = 305/453 (68%), Gaps = 17/453 (3%) Query 11 VRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSR 70 R A +ALA+ ++ G+ + +V + DG+ + +LG DGA DILLVG+DSR Sbjct 33 TRGVLAAVSALALVVM---GIGYMTVGNLNDGLAQANNLNLGSQ-PDGATDILLVGVDSR 88 Query 71 TDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKT 130 TDA GNPLS +E+ L AG+EEATNTDT+ILIR+PN+G SATA+S+PRD+YV+ P G Sbjct 89 TDAKGNPLSQKEIDMLRAGEEEATNTDTMILIRIPNDGSSATAVSLPRDTYVSTPDNGNM 148 Query 131 KINGVYGQTRETKRAGLVQAG-ASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGL 189 K+NGVYG + K L + G S ++ TEAGR+ALI +VADLTG+TVDHYAE+GL Sbjct 149 KLNGVYGTAKFEKSQELEKDGDNSKSDIEQKSTEAGRQALISSVADLTGITVDHYAEVGL 208 Query 190 LGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRV 249 LGF L+ DA+GGVDVCLK+ V EPLSGA F GRQ L+G ALSFVRQRH+LPRGDLDR+ Sbjct 209 LGFVLLTDAVGGVDVCLKDKVDEPLSGAKFKKGRQTLDGQDALSFVRQRHELPRGDLDRI 268 Query 250 VRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNV 309 RQQA MA+LA++V+S +TL+ P ++ +L AVQRSVVL SGWD+M Q+Q +AGG+V Sbjct 269 TRQQAYMASLANKVLSSKTLTDPGSMSKLNDAVQRSVVLDSGWDVMGLATQMQNMAGGDV 328 Query 310 AFATIPV--LDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHE---QDQGKTDELA----YT 360 +F TIPV +DG G D +SVV VD QV + LL + ++ +D+ A Y Sbjct 329 SFQTIPVTSIDGTG---DYGESVVTVDNDQVHKFFKDLLGDKPGEESTSSDKPADITDYK 385 Query 361 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ 420 NV N ++ GLAA VS ++ G+ G VGN+ + SQV A ADD A+ Sbjct 386 AKDYKVNVFNASEQAGLAARVSDLVKDYGYKPGKVGNHPETGISESQVNAKNADDPAARA 445 Query 421 VAKELGGLPVVADASIAPGSVRVVLANDYSGPG 453 +AK+LGGL VV D+S+ + V L+ Y+GPG Sbjct 446 LAKQLGGLNVVEDSSLDEHELSVTLSGTYAGPG 478 >gi|68536736|ref|YP_251441.1| hypothetical protein jk1648 [Corynebacterium jeikeium K411] gi|68264335|emb|CAI37823.1| hypothetical protein jk1648 [Corynebacterium jeikeium K411] Length=555 Score = 417 bits (1073), Expect = 2e-114, Method: Compositional matrix adjust. Identities = 231/453 (51%), Positives = 305/453 (68%), Gaps = 17/453 (3%) Query 11 VRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSR 70 R A +ALA+ ++ G+ + +V + DG+ + +LG DGA DILLVG+DSR Sbjct 33 TRGVLAAVSALALVVM---GIGYMAVGNLNDGLAQANNLNLGSQ-PDGATDILLVGVDSR 88 Query 71 TDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKT 130 TDA GNPLS +E+ L AG+EEATNTDT+ILIR+PN+G SATA+S+PRD+YV+ P G Sbjct 89 TDAKGNPLSQKEIDMLRAGEEEATNTDTMILIRIPNDGSSATAVSLPRDTYVSTPDNGNM 148 Query 131 KINGVYGQTRETKRAGLVQAG-ASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGL 189 K+NGVYG + K L + G S ++ TEAGR+ALI +VADLTG+TVDHYAE+GL Sbjct 149 KLNGVYGTAKFEKSQELEKDGDNSKSDIEQKSTEAGRQALISSVADLTGITVDHYAEVGL 208 Query 190 LGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRV 249 LGF L+ DA+GGVDVCLK+ V EPLSGA F GRQ L+G ALSFVRQRH+LPRGDLDR+ Sbjct 209 LGFVLLTDAVGGVDVCLKDKVDEPLSGAKFKKGRQTLDGQDALSFVRQRHELPRGDLDRI 268 Query 250 VRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNV 309 RQQA MA+LA++V+S +TL+ P ++ +L AVQRSVVL SGWD+M Q+Q +AGG+V Sbjct 269 TRQQAYMASLANKVLSSKTLTDPGSMSKLNDAVQRSVVLDSGWDVMGLATQMQNMAGGDV 328 Query 310 AFATIPV--LDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHE---QDQGKTDELA----YT 360 +F TIPV +DG G D +SVV VD QV + LL + ++ +D+ A Y Sbjct 329 SFQTIPVTSIDGTG---DYGESVVTVDNDQVHKFFKDLLGDKPGEESTSSDKPADITDYK 385 Query 361 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ 420 NV N ++ GLAA VS ++ G+ G VGN+ + SQV A ADD A+ Sbjct 386 AKDYKVNVFNASEQAGLAARVSDLVKDYGYKPGKVGNHPETGISESQVNAKNADDPAARA 445 Query 421 VAKELGGLPVVADASIAPGSVRVVLANDYSGPG 453 +AK+LGGL VV D+S+ + V L+ Y+GPG Sbjct 446 LAKQLGGLNVVEDSSLDEHELSVTLSGTYAGPG 478 >gi|326382031|ref|ZP_08203724.1| cell envelope-like function transcriptional attenuator [Gordonia neofelifaecis NRRL B-59395] gi|326199457|gb|EGD56638.1| cell envelope-like function transcriptional attenuator [Gordonia neofelifaecis NRRL B-59395] Length=571 Score = 414 bits (1063), Expect = 2e-113, Method: Compositional matrix adjust. Identities = 230/486 (48%), Positives = 314/486 (65%), Gaps = 13/486 (2%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAH 74 RA+ V I++ TG+ W+ VRS +G + + GGDDGA+DILLVG DSR DA Sbjct 97 RAVVALATVMILVVTGLGWAKVRSL-NGAVTLLSDLGLGGGDDGAVDILLVGTDSRVDAK 155 Query 75 GNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKING 134 G+PL +EL L G + +T+TDTI+L+R+P +G ATAISIPRD+YV PG+G +KIN Sbjct 156 GDPLPEDELKWLRVGGDVSTSTDTIVLVRIPEDGSKATAISIPRDTYVDVPGIGMSKINA 215 Query 135 VYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFAL 194 YG T+E+ R V+ G + +A GT+AGR+ALI +VA+LTG+TVDHYAE+GLLGFAL Sbjct 216 AYGATKESVRTTEVEQGTAEAQAEKDGTKAGRKALIDSVANLTGITVDHYAEVGLLGFAL 275 Query 195 IADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQA 254 + DA+GGVDVCLK V EP SGA F AGRQ LNGP+ALSFVRQRHDLPRGDLDR+ RQQ Sbjct 276 LTDAVGGVDVCLKNAVNEPFSGARFRAGRQTLNGPKALSFVRQRHDLPRGDLDRITRQQV 335 Query 255 VMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATI 314 MA+LA +++S QTL++ L+ L+ AV RSV++ SGWDI+ FV L+ L GGNV FATI Sbjct 336 YMASLAQKILSTQTLTNTGKLQELQDAVSRSVMIDSGWDILSFVENLKDLTGGNVKFATI 395 Query 315 PVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDI 374 P+ D WSDDG QSV++VDP+ V +V L Q K+ + + T +VVN + Sbjct 396 PIEDDQAWSDDGTQSVLKVDPQAVHTFVDSQLGRSSQAKS---SNPRSDYTVDVVNAGTV 452 Query 375 NGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKEL--GGLPVVA 432 +GLA+ V ++L G+ G+ + + S + A AD+ GA+Q+ K+L G + + Sbjct 453 DGLASNVQRLLVGLGYGQGATSSKPMNEFD-SLIFAGSADNEGAKQLVKDLKAGEIEIRE 511 Query 433 DASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPILTAGSD 492 D+S+ +R+VL N Y+ GLG + + P P++ A +D Sbjct 512 DSSLPENKLRLVLTNTYN---FGLGAL---SGTGEESTSESSATTSSKPQAGPVIKADTD 565 Query 493 APECIN 498 P C+N Sbjct 566 GPVCVN 571 >gi|296138789|ref|YP_003646032.1| cell envelope-related transcriptional attenuator [Tsukamurella paurometabola DSM 20162] gi|296026923|gb|ADG77693.1| cell envelope-related transcriptional attenuator [Tsukamurella paurometabola DSM 20162] Length=567 Score = 411 bits (1056), Expect = 1e-112, Method: Compositional matrix adjust. Identities = 237/467 (51%), Positives = 307/467 (66%), Gaps = 29/467 (6%) Query 6 RVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHM----SAPSLGHGGDDGAID 61 R+ RT +TA + LA +++ TGVAW+ I S P DGA D Sbjct 60 RIHRTGKTAIVL---LAAVVLIATGVAWTQFYQLGGDIARTGGLDSQP-------DGATD 109 Query 62 ILLVGLDSRTDAHGNPLSAEELATLHAGDEEAT-NTDTIILIRVPNNGKSATAISIPRDS 120 ILLVG DSRTDA GNPL+ +ELA L+AG ++ T NTDTIILIR+PNNGKSATAISIPRD+ Sbjct 110 ILLVGTDSRTDAKGNPLTEKELARLNAGVDDGTLNTDTIILIRIPNNGKSATAISIPRDA 169 Query 121 YVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVT 180 YVA P GK KIN + R L+ G S +A AG E GR+AL +TVA+LTGV+ Sbjct 170 YVAIPDQGKGKINSAFAGAANVTRDKLLTEGKSEKDAIQAGNEEGRKALRETVANLTGVS 229 Query 181 VDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHD 240 VD+YAEIGL+GF+ + DA+GGV+VCLK PV + SGA F AGRQ L GPQALSFVRQRH Sbjct 230 VDNYAEIGLVGFSRLTDAVGGVEVCLKRPVNDSYSGARFRAGRQTLKGPQALSFVRQRHG 289 Query 241 LPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQ 300 LPRGDLDR+ RQQ MA+LA++++S TL++P+ + +L+ AV SV L + WD+M+F ++ Sbjct 290 LPRGDLDRITRQQVFMASLANKILSAGTLTNPSKVNQLQNAVTTSVTLDANWDVMNFAKE 349 Query 301 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT 360 L L+ G+V FAT+PV+ GWSDDG QSVV VDP+QVQ +V LL ++ G T T Sbjct 350 LANLSAGSVKFATVPVVRDDGWSDDGQQSVVVVDPKQVQAYVRSLLGDK-PGATSAKPTT 408 Query 361 P----------AKTTANVVNDTDINGLAAAVSKVLSSKGF---TTGSVGNNDGDHVPGSQ 407 A TT +VVN GLA++VS L+ + F TTG+ N++ S Sbjct 409 SSAPAVPSVNRAATTVDVVNGGSTPGLASSVSSFLTGEKFQQGTTGNASNSESSASGKSA 468 Query 408 VRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLANDYSGPGS 454 V A+ A+D A+ VA LGGLPV+A +S+ G V+V+L + Y GPGS Sbjct 469 VLASSANDQPAKAVAALLGGLPVIASSSVQQGRVKVLLKDGYKGPGS 515 >gi|172040148|ref|YP_001799862.1| LytR family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171851452|emb|CAQ04428.1| putative transcriptional regulator (LytR family) [Corynebacterium urealyticum DSM 7109] Length=594 Score = 410 bits (1054), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 229/453 (51%), Positives = 295/453 (66%), Gaps = 26/453 (5%) Query 22 AVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAE 81 A+ +VLG V + ++ + + +LG DGA DILLVG+DSRTDA GNPLS + Sbjct 65 ALVLVLGA-VGYKAIGQLDGRLAQTGELALGDN-QDGATDILLVGIDSRTDAQGNPLSQK 122 Query 82 ELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRE 141 E+ L+AG+EE TNTDTIILIRVPN+G ATA+S+PRD+YVA P G K+NGVYG + Sbjct 123 EIDMLNAGEEEVTNTDTIILIRVPNDGSGATAVSLPRDTYVATPN-GNMKLNGVYGTAKF 181 Query 142 TKRAGLVQAGASPTEAA------AAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALI 195 + + + P +A A +AGR+ALI +VADLTG+TVDHYAEIGLLGF L+ Sbjct 182 EEEQKIAERRTEPADAEQEKSDEEASKQAGRQALIHSVADLTGITVDHYAEIGLLGFVLL 241 Query 196 ADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAV 255 DA+GGVDVCLKE V EPLSGA+FP GR L GPQALSFVRQRH LPRGDLDR+ RQQA Sbjct 242 TDAVGGVDVCLKEEVKEPLSGANFPKGRYTLKGPQALSFVRQRHGLPRGDLDRITRQQAY 301 Query 256 MAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIP 315 MA+L ++V+S +TL+ P L R+ AV+RSVVL GWD+M Q+Q LAGGNV F TIP Sbjct 302 MASLVNKVLSSKTLTDPTALNRINDAVERSVVLDQGWDVMSLATQMQDLAGGNVKFQTIP 361 Query 316 V--LDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHE-----------QDQGKTDELA-YTP 361 V +DG G D +S+V VD QV ++ LL E +D+ K + Y Sbjct 362 VTSIDGVG---DMGESIVTVDVDQVHEFFNELLGEDAPADGGDEAAKDKDKDGPIEDYDA 418 Query 362 AKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQV 421 NV N ++I G+AA VS++ + G+ G VG+++ V SQV A +D A+ + Sbjct 419 KDYRVNVFNASNIPGIAANVSELTRNYGYQEGEVGDSEETGVSESQVNAKDKNDPAARGL 478 Query 422 AKELGGLPVVADASIAPGSVRVVLANDYSGPGS 454 AK+LGGL +V D S+ + V LA YSGPGS Sbjct 479 AKQLGGLEIVEDPSLGDKELSVTLAGTYSGPGS 511 >gi|145294902|ref|YP_001137723.1| hypothetical protein cgR_0849 [Corynebacterium glutamicum R] gi|140844822|dbj|BAF53821.1| hypothetical protein [Corynebacterium glutamicum R] Length=519 Score = 405 bits (1042), Expect = 6e-111, Method: Compositional matrix adjust. Identities = 228/452 (51%), Positives = 292/452 (65%), Gaps = 19/452 (4%) Query 57 DGAIDILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISI 116 DGA DILLVG DSR+DA GN L+ EELA L AGDEE NTDTI++IRVPN+G SATA+SI Sbjct 77 DGATDILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIMVIRVPNDGSSATAVSI 136 Query 117 PRDSYVAAPGLGKTKINGVYGQTRETKRAGLVQAG-ASPTEAAAAGTEAGREALIKTVAD 175 PRD+Y+ G KINGVYG ++ +RA L++ G + +E +AGRE LI V+D Sbjct 137 PRDTYIHDDDYGNMKINGVYGAYKDARRAELMEQGFTNESELETRAKDAGREGLIDAVSD 196 Query 176 LTGVTVDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFV 235 LTG+TVDHYAE+GLLGF L+ DA+GGV+VCL V EPLSGA+FPAGRQ L G ALS+V Sbjct 197 LTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANFPAGRQTLGGSDALSYV 256 Query 236 RQRHDLPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIM 295 RQRHDLPRGDLDR+VRQQ+ MA+L ++V+S TL++PA L L AV RSVV+ GW+IM Sbjct 257 RQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALADAVTRSVVIDEGWEIM 316 Query 296 DFVRQLQKLAGGNVAFATIPV--LDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGK 353 F QLQ LAGGNV F TIPV +DG G D +SVV +D QV + L E + Sbjct 317 SFATQLQNLAGGNVTFGTIPVTSIDGTG---DYGESVVTIDVNQVHAFFQEALGETEPAP 373 Query 354 TDELAYTPA-------KTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGS 406 D A PA + +V+N + GLA ++ L G+T GN S Sbjct 374 EDGSADQPADQAPDLSEVEVHVLNASYTEGLANGIAAHLQEMGYTISETGNAAEGLYYES 433 Query 407 QVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVS 466 Q+ AA+AD+ A +++ LGGLP+VA++S+ +V VV A DY+GP ++ N V++ Sbjct 434 QILAAEADNEKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGP-----TAEANAVIT 488 Query 467 PARAFNLGSADDTTPPPSPILTAGSDAPECIN 498 + G AD P SP AG D P C+N Sbjct 489 SSTVGQPG-ADVGAPIESPEFDAGGDGPRCVN 519 >gi|340795145|ref|YP_004760608.1| LytR transcription regulator [Corynebacterium variabile DSM 44702] gi|340535055|gb|AEK37535.1| LytR transcription regulator [Corynebacterium variabile DSM 44702] Length=622 Score = 403 bits (1036), Expect = 3e-110, Method: Compositional matrix adjust. Identities = 221/460 (49%), Positives = 301/460 (66%), Gaps = 24/460 (5%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAH 74 +A+ LAV +++G G +++V D + LG D GA DILLVG+DSRTDA Sbjct 104 KAVLGILAVLLLIGGGYGYATVGKLGDSLATTGGLDLGDQAD-GATDILLVGIDSRTDAK 162 Query 75 GNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYV-AAPGLGKTKIN 133 G PLS +E+ L AG+EE T+TDT+ILIR+PN+G SATA+S+PRD+YV LG K+N Sbjct 163 GKPLSQQEIDMLRAGEEETTSTDTMILIRIPNDGSSATAVSLPRDTYVDGGSELGNVKLN 222 Query 134 GVYGQTR---ETKRAGLVQAGA---SPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEI 187 +YG T+ ET++A A + + + G + GREALI ++ +LTG++VDHYAE+ Sbjct 223 QIYGSTKYNYETEKADEAAADGEEYNEDKVSKEGIQKGREALIGSIGNLTGISVDHYAEV 282 Query 188 GLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLD 247 GLLGF L+ DA+GGVDVCL V EPLSGA+FPAG+Q L+GP ALSFVRQRHDLPRGDLD Sbjct 283 GLLGFVLLTDAVGGVDVCLNNAVDEPLSGANFPAGQQTLDGPNALSFVRQRHDLPRGDLD 342 Query 248 RVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGG 307 R+ RQQA +A+LA++++S +TLS+P L +L AV RS+ + GWDIM Q+Q L GG Sbjct 343 RITRQQAYLASLANKILSAKTLSNPGQLSKLNDAVSRSLTIDDGWDIMGLATQMQNLTGG 402 Query 308 NVAFATIPV--LDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELA------- 358 NV+F TIPV +DG G D +SVV VDP QV + LL + + +DE Sbjct 403 NVSFQTIPVTSIDGTG---DYGESVVTVDPNQVHGFFDDLLGDSKKDGSDESESEETTEE 459 Query 359 ----YTPAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKAD 414 Y A +T +V+N +++GLA V +++ GFT VGN+D V SQV A + Sbjct 460 SIPDYDAAASTVSVLNAGNVDGLATRVGDLVAGAGFTVDEVGNHDESGVSESQVNVADVN 519 Query 415 DLGAQQVAKELGGLPVVADASIAPGSVRVVLANDYSGPGS 454 D A+ +AK+LG L VV D ++A G + V L+ Y+GPG+ Sbjct 520 DPAARDLAKKLGDLQVVEDPTLAEGQISVTLSGTYTGPGA 559 >gi|344043759|gb|EGV39447.1| hypothetical protein CgS9114_13311 [Corynebacterium glutamicum S9114] Length=519 Score = 400 bits (1028), Expect = 3e-109, Method: Compositional matrix adjust. Identities = 225/452 (50%), Positives = 292/452 (65%), Gaps = 19/452 (4%) Query 57 DGAIDILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISI 116 DGA DILLVG DSR+DA GN L+ EELA L AGDEE NTDTI++IRVPN+G SATA+SI Sbjct 77 DGATDILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIMVIRVPNDGSSATAVSI 136 Query 117 PRDSYVAAPGLGKTKINGVYGQTRETKRAGLVQAG-ASPTEAAAAGTEAGREALIKTVAD 175 PRD+Y+ G KINGVYG ++ +RA L+ G + +E +AGRE LI+ V+D Sbjct 137 PRDTYIHDDDYGNMKINGVYGAYKDARRAELMDQGFTNESELETRAKDAGREGLIEAVSD 196 Query 176 LTGVTVDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFV 235 LTG+TVDHYAE+GLLGF L+ DA+GGV+VCL V EPLSGA+FPAGRQ L G ALS+V Sbjct 197 LTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANFPAGRQTLGGSDALSYV 256 Query 236 RQRHDLPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIM 295 RQRHDLPRGDLDR+VRQQ+ MA+L ++V+S TL++PA L L AV RSVV+ GW+IM Sbjct 257 RQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALADAVTRSVVIDEGWEIM 316 Query 296 DFVRQLQKLAGGNVAFATIPV--LDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGK 353 F QLQ LAGGNV F TIPV +DG G D +SVV +D QV + L E + Sbjct 317 SFATQLQNLAGGNVTFGTIPVTSIDGTG---DYGESVVTIDVNQVHAFFQEALGETEPAP 373 Query 354 TD-------ELAYTPAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGS 406 D + A ++ +V+N + GLA ++ L G++ GN S Sbjct 374 EDGSDDQSADQAPDLSEVEVHVLNASYTEGLANGIAAHLQELGYSIAETGNAAEGLYYES 433 Query 407 QVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVS 466 Q+ AA+AD+ A +++ LGGLP+VA++S+ +V VV A DY+GP ++ N V++ Sbjct 434 QILAAEADNEKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGP-----TAEANAVIT 488 Query 467 PARAFNLGSADDTTPPPSPILTAGSDAPECIN 498 + G AD P SP AG D P C+N Sbjct 489 SSTVGQPG-ADVGAPIESPEFDAGGDGPRCVN 519 >gi|19551968|ref|NP_599970.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62389628|ref|YP_225030.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21323506|dbj|BAB98133.1| Transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|41324963|emb|CAF19444.1| putative transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length=518 Score = 400 bits (1027), Expect = 4e-109, Method: Compositional matrix adjust. Identities = 224/452 (50%), Positives = 288/452 (64%), Gaps = 20/452 (4%) Query 57 DGAIDILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISI 116 DGA DILLVG DSR+DA GN L+ EELA L AGDEE NTDTI++IRVPN+G SATA+SI Sbjct 77 DGATDILLVGSDSRSDAQGNTLTEEELAMLRAGDEENDNTDTIMVIRVPNDGSSATAVSI 136 Query 117 PRDSYVAAPGLGKTKINGVYGQTRETKRAGLVQAG-ASPTEAAAAGTEAGREALIKTVAD 175 PRD+Y+ G KINGVYG ++ +RA L++ G + +E +AGRE LI V+D Sbjct 137 PRDTYIHDDDYGNMKINGVYGAYKDARRAELMEQGFTNESELETRAKDAGREGLIDAVSD 196 Query 176 LTGVTVDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFV 235 LTG+TVDHYAE+GLLGF L+ DA+GGV+VCL V EPLSGA+FPAGRQ L G ALS+V Sbjct 197 LTGITVDHYAEVGLLGFVLLTDAVGGVEVCLNNAVDEPLSGANFPAGRQTLGGSDALSYV 256 Query 236 RQRHDLPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIM 295 RQRHDLPRGDLDR+VRQQ+ MA+L ++V+S TL++PA L L AV RSVV+ GW+IM Sbjct 257 RQRHDLPRGDLDRIVRQQSYMASLVNQVLSSGTLTNPAKLSALADAVTRSVVIDEGWEIM 316 Query 296 DFVRQLQKLAGGNVAFATIPV--LDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGK 353 F QLQ LAGGNV FATIPV +DG G D +SVV +D QV + L E + Sbjct 317 SFATQLQNLAGGNVTFATIPVTSIDGTG---DYGESVVTIDVNQVHAFFQEALGEAEPAP 373 Query 354 TD-------ELAYTPAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGS 406 D + A ++ +V+N + + GLA ++ L G++ GN S Sbjct 374 EDGSDDQSADQAPDLSEVEVHVLNASYVEGLANGIAAQLQELGYSIAETGNAAEGLYYES 433 Query 407 QVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVS 466 Q+ AA+ D A +++ LGGLP+VA++S+ +V VV A DY+GP + + V Sbjct 434 QILAAEEDSAKALAISEALGGLPIVANSSLDDNTVIVVSAGDYAGPTAEANAVTSSTVGQ 493 Query 467 PARAFNLGSADDTTPPPSPILTAGSDAPECIN 498 P AD P SP AG D P C+N Sbjct 494 PG-------ADVGEPIESPEFDAGGDGPRCVN 518 >gi|317508994|ref|ZP_07966626.1| hypothetical protein HMPREF9336_02998 [Segniliparus rugosus ATCC BAA-974] gi|316252704|gb|EFV12142.1| hypothetical protein HMPREF9336_02998 [Segniliparus rugosus ATCC BAA-974] Length=465 Score = 396 bits (1017), Expect = 5e-108, Method: Compositional matrix adjust. Identities = 220/423 (53%), Positives = 279/423 (66%), Gaps = 5/423 (1%) Query 29 TGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAEELATLHA 88 TG AW ++ + IF DDGA DILLVG+DSRTDA GN L+ + A LHA Sbjct 6 TGKAWDYYQTNDGLIFKFDLSDSMSQSDDGAEDILLVGVDSRTDAAGNALTGDMRAKLHA 65 Query 89 G---DEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRA 145 G ++ NTDTIIL+R+P +G SATA+SIPRD++V APGLG+ KIN VYG T+E R Sbjct 66 GGDAEDGTVNTDTIILVRIPKSGSSATAVSIPRDAFVKAPGLGQVKINSVYGSTKEAARI 125 Query 146 GLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVC 205 LV++G S EA T A R+AL +TV DLTGV++DH AE+GLLGF + DALGGVDVC Sbjct 126 QLVKSGVSDAEADRQSTLAARKALFQTVQDLTGVSIDHMAEVGLLGFVELTDALGGVDVC 185 Query 206 LKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMAALAHRVIS 265 L + V EPLSGA+FPAGRQ L+G QALSFVRQRHDLPRGDLDR+VRQQA MAALA + +S Sbjct 186 LNDAVDEPLSGANFPAGRQTLDGVQALSFVRQRHDLPRGDLDRIVRQQAFMAALARKALS 245 Query 266 GQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAGWSDD 325 G+ L P+ + ++ AV+ SV + W+I+DF +L L+GG V FAT+PV+D G + Sbjct 246 GKFLRDPSRINQIVDAVKTSVAIDDKWNILDFASKLSDLSGGKVRFATVPVVDPDGQTPG 305 Query 326 GMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDINGLAAAVSKVL 385 G QSVV VDP VQ + GLL+ Q Q + P +TT +V N ++I GLA ++ L Sbjct 306 G-QSVVVVDPASVQAYFRGLLNAQKQDDQAPQSAQP-ETTVDVENASNIPGLAQKIAAGL 363 Query 386 SSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVL 445 G TG VG G S V A ADD Q++ +G LPV D+S+ G VR+VL Sbjct 364 GEAGLNTGDVGEYRGTKPETSAVYAHSADDAVVSQLSGVVGQLPVEVDSSLPAGHVRLVL 423 Query 446 AND 448 A D Sbjct 424 AGD 426 >gi|339296095|gb|AEJ48206.1| hypothetical protein CCDC5079_3016 [Mycobacterium tuberculosis CCDC5079] Length=198 Score = 395 bits (1015), Expect = 1e-107, Method: Compositional matrix adjust. Identities = 197/198 (99%), Positives = 198/198 (100%), Gaps = 0/198 (0%) Query 301 LQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT 360 +QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT Sbjct 1 MQKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYT 60 Query 361 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ 420 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ Sbjct 61 PAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQ 120 Query 421 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTT 480 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTT Sbjct 121 VAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTT 180 Query 481 PPPSPILTAGSDAPECIN 498 PPPSPILTAGSDAPECIN Sbjct 181 PPPSPILTAGSDAPECIN 198 >gi|38233287|ref|NP_939054.1| hypothetical protein DIP0680 [Corynebacterium diphtheriae NCTC 13129] gi|38199546|emb|CAE49197.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length=492 Score = 394 bits (1012), Expect = 2e-107, Method: Compositional matrix adjust. Identities = 234/468 (50%), Positives = 296/468 (64%), Gaps = 21/468 (4%) Query 47 SAPSLGHGGD-------DGAIDILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTI 99 SA +L GGD DGA DILLVG DSRTDA GNPL+ EE+ LHAGDEE NTDT+ Sbjct 30 SAGNLVLGGDKGMKEAADGATDILLVGSDSRTDAQGNPLTPEEIELLHAGDEENDNTDTL 89 Query 100 ILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAA- 158 ++IRVPN+G SATAISIPRD+YV +G KINGVY + K + LV +G S + Sbjct 90 MVIRVPNDGSSATAISIPRDTYVHDENVGNLKINGVYRAYKNRKASELVNSGESDQKHID 149 Query 159 AAGTEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGAD 218 EAGR+ALI +++DLTGVTVDHYAE+GLLGF L+ +A+GGVDVCL VY+ SGAD Sbjct 150 ELSKEAGRKALISSISDLTGVTVDHYAEVGLLGFVLLTNAVGGVDVCLNNDVYDEFSGAD 209 Query 219 FPAGRQKLNGPQALSFVRQRHDLPRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRL 278 F AG+Q L QAL+FVRQRH LPRGDLDR+VRQQA MA+L +V+S TL++P+ L L Sbjct 210 FKAGQQTLRDGQALAFVRQRHGLPRGDLDRIVRQQAFMASLVAKVLSSGTLTNPSKLSDL 269 Query 279 EQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPV--LDGAGWSDDGMQSVVRVDPR 336 +AV RSVV+ WD+M F QLQ LAGGNV F TIPV +DG G D +SVV VD Sbjct 270 GEAVSRSVVIDKNWDVMSFANQLQNLAGGNVKFNTIPVTSIDGVG---DYGESVVTVDKN 326 Query 337 QVQDWVVGLLH-----EQDQGKTDELAYTP-AKTTANVVNDTDINGLAAAVSKVLSSKGF 390 QV + LL+ E ++ A P TT +V+N T GLA+ V+ LS+K + Sbjct 327 QVHQFFDRLLNGNNGEETPTSDSEAPAENPHTSTTIDVLNATSTTGLASQVAGHLSAKHY 386 Query 391 TTGSVGNNDGDHVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLANDYS 450 T G++GN SQ+ AA ++ + +A ELGGLP+ + SV VV+A+DYS Sbjct 387 TIGNIGNALEGMYHESQIVAADPNNEAVKAIAAELGGLPITQRNDLDADSVVVVIASDYS 446 Query 451 GPGSGLGGSDPNGVVSPARAFNLGSADDTTPPPSPILTAGSDAPECIN 498 GP +G G + S GS D+ SP + AG P C+N Sbjct 447 GP-TGDGAESSDSSSSTTTVGKPGS-DEGEAIVSPEIDAGGQGPRCVN 492 >gi|25027310|ref|NP_737364.1| hypothetical protein CE0754 [Corynebacterium efficiens YS-314] gi|259506551|ref|ZP_05749453.1| LytR family transcriptional regulator [Corynebacterium efficiens YS-314] gi|23492591|dbj|BAC17564.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165971|gb|EEW50525.1| LytR family transcriptional regulator [Corynebacterium efficiens YS-314] Length=524 Score = 393 bits (1009), Expect = 4e-107, Method: Compositional matrix adjust. Identities = 243/508 (48%), Positives = 314/508 (62%), Gaps = 37/508 (7%) Query 15 RAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGD-------DGAIDILLVGL 67 R++ L+V ++L +G+ + +V S D + + +LG G DGA DILLVG Sbjct 30 RSVVAFLSVLVLLISGLGYFAVGSIGD-VANAGNLTLGGGAGVRDGQSLDGATDILLVGS 88 Query 68 DSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGL 127 DSR+DA GN LS EELA L AGDEE NTDTI++IRVPN+G SA+A+SIPRD+Y+ Sbjct 89 DSRSDAQGNTLSDEELAMLRAGDEENDNTDTIMVIRVPNDGSSASAVSIPRDTYIHDDEY 148 Query 128 GKTKINGVYGQTRETKRAGLVQAG-ASPTEAAAAGTEAGREALIKTVADLTGVTVDHYAE 186 G KINGVYG ++ + LV+ G + +E + EAGRE LI V++LTG+TVDHYAE Sbjct 149 GNMKINGVYGAYKDARHTELVEQGFTNESELESRSKEAGREGLIDAVSNLTGITVDHYAE 208 Query 187 IGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLPRGDL 246 IGLLGF L+ DA+GGV+VCL EPV EPLSGADF AGRQ L G ALSFVRQRH LPRGDL Sbjct 209 IGLLGFVLLTDAVGGVEVCLNEPVNEPLSGADFDAGRQTLGGSDALSFVRQRHGLPRGDL 268 Query 247 DRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAG 306 DR+VRQQA MA+L ++++S TL++P L L AV RSV++ GWD+M F QLQ LAG Sbjct 269 DRIVRQQAFMASLVNQILSSGTLTNPGKLSALADAVMRSVIIDEGWDVMGFATQLQNLAG 328 Query 307 GNVAFATIPV--LDGAGWSDDGMQSVVRVDPRQV----QDWVVGLLHEQDQGKTDELAYT 360 GNV F TIPV +DG G D +SVV VD QV +D + G E+ D Sbjct 329 GNVTFTTIPVTSIDGVG---DYGESVVTVDLDQVHAFFEDALGGDEPEETTSDGDASGEA 385 Query 361 PAKTTAN------VVNDTDINGLAAAVSKVLSSKGFTTGSVGNN-DGDHVPGSQVRAAKA 413 + TAN V+N + GLA V+ L G+T +GN DG + SQV AA Sbjct 386 TGEATANADTMVHVLNASGEAGLAGGVAGHLEGLGYTIEEIGNAIDGLYYE-SQVLAADP 444 Query 414 DDLGAQQVAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNL 473 D A+ +A ELGGLP+VA+AS+ ++ V+ DY+GP + VS + + Sbjct 445 TDPQAEAIAAELGGLPIVANASLDADTIIVISHIDYAGPTA--------ETVSEPTSTPV 496 Query 474 GS-ADDTTPPP--SPILTAGSDAPECIN 498 G D + P SP + AG D P C+N Sbjct 497 GQPGGDASGEPILSPEIDAGGDGPRCVN 524 Lambda K H 0.314 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1071489888984 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40