BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3272 Length=394 Score E Sequences producing significant alignments: (Bits) Value gi|15610408|ref|NP_217789.1| hypothetical protein Rv3272 [Mycoba... 803 0.0 gi|31794452|ref|NP_856945.1| hypothetical protein Mb3300 [Mycoba... 802 0.0 gi|289747090|ref|ZP_06506468.1| yfdE protein [Mycobacterium tube... 802 0.0 gi|289759413|ref|ZP_06518791.1| yfdE protein [Mycobacterium tube... 800 0.0 gi|121639161|ref|YP_979385.1| hypothetical protein BCG_3301 [Myc... 799 0.0 gi|340628254|ref|YP_004746706.1| hypothetical protein MCAN_32951... 799 0.0 gi|289763461|ref|ZP_06522839.1| yfdE protein [Mycobacterium tube... 678 0.0 gi|308232403|ref|ZP_07415938.2| hypothetical protein TMAG_02725 ... 671 0.0 gi|240172494|ref|ZP_04751153.1| acyl-CoA transferase [Mycobacter... 630 1e-178 gi|183981289|ref|YP_001849580.1| acyl-CoA transferase [Mycobacte... 624 7e-177 gi|118618089|ref|YP_906421.1| acyl-CoA transferase [Mycobacteriu... 623 2e-176 gi|296168931|ref|ZP_06850600.1| YfdE protein [Mycobacterium para... 595 4e-168 gi|254819497|ref|ZP_05224498.1| hypothetical protein MintA_06209... 589 3e-166 gi|333991666|ref|YP_004524280.1| acyl-CoA transferase [Mycobacte... 587 1e-165 gi|118462866|ref|YP_883378.1| YfdE protein [Mycobacterium avium ... 587 2e-165 gi|41409484|ref|NP_962320.1| hypothetical protein MAP3386 [Mycob... 584 7e-165 gi|342861477|ref|ZP_08718124.1| hypothetical protein MCOL_21431 ... 583 2e-164 gi|254776672|ref|ZP_05218188.1| YfdE protein [Mycobacterium aviu... 566 2e-159 gi|226304279|ref|YP_002764237.1| hypothetical protein RER_07900 ... 550 2e-154 gi|331697020|ref|YP_004333259.1| formyl-CoA transferase [Pseudon... 333 2e-89 gi|339323163|ref|YP_004682057.1| hypothetical protein CNE_2c1869... 223 5e-56 gi|220923392|ref|YP_002498694.1| L-carnitine dehydratase/bile ac... 223 5e-56 gi|116695844|ref|YP_841420.1| hypothetical protein H16_B1908 [Ra... 222 9e-56 gi|302880821|ref|XP_003039341.1| hypothetical protein NECHADRAFT... 221 2e-55 gi|256378201|ref|YP_003101861.1| L-carnitine dehydratase/bile ac... 218 2e-54 gi|121534111|ref|ZP_01665936.1| Formyl-CoA transferase [Thermosi... 217 3e-54 gi|289524305|ref|ZP_06441159.1| CAIB/BAIF family protein [Anaero... 213 3e-53 gi|325000436|ref|ZP_08121548.1| CaiB/BaiF family protein [Pseudo... 213 6e-53 gi|121534539|ref|ZP_01666361.1| Formyl-CoA transferase [Thermosi... 212 9e-53 gi|226309309|ref|YP_002769269.1| hypothetical protein RER_58220 ... 212 9e-53 gi|327310742|ref|YP_004337639.1| glucose dehydrogenase [Thermopr... 211 1e-52 gi|296158867|ref|ZP_06841695.1| L-carnitine dehydratase/bile aci... 211 1e-52 gi|226362037|ref|YP_002779815.1| CaiB/BaiF family protein [Rhodo... 211 1e-52 gi|115361158|ref|YP_778295.1| Formyl-CoA transferase [Burkholder... 211 3e-52 gi|338813859|ref|ZP_08625936.1| Formyl-CoA transferase [Acetonem... 210 3e-52 gi|339323894|ref|YP_004682787.1| L-carnitine dehydratase/bile ac... 210 4e-52 gi|298249620|ref|ZP_06973424.1| L-carnitine dehydratase/bile aci... 209 5e-52 gi|269928907|ref|YP_003321228.1| Formyl-CoA transferase [Sphaero... 209 6e-52 gi|121608237|ref|YP_996044.1| L-carnitine dehydratase/bile acid-... 209 7e-52 gi|317126136|ref|YP_004100248.1| L-carnitine dehydratase/bile ac... 209 9e-52 gi|255946535|ref|XP_002564035.1| Pc20g15630 [Penicillium chrysog... 207 2e-51 gi|118471022|ref|YP_890981.1| CaiB/BaiF family protein [Mycobact... 207 3e-51 gi|33603650|ref|NP_891210.1| CaiB/BaiF family protein [Bordetell... 206 4e-51 gi|226308522|ref|YP_002768482.1| hypothetical protein RER_50350 ... 206 5e-51 gi|336455132|ref|NP_001229612.1| hypothetical protein LOC585781 ... 206 6e-51 gi|150376806|ref|YP_001313402.1| L-carnitine dehydratase/bile ac... 205 1e-50 gi|33598696|ref|NP_886339.1| CaiB/BaiF family protein [Bordetell... 204 2e-50 gi|194291551|ref|YP_002007458.1| formyl-CoA transferase, nad(p)-... 204 2e-50 gi|324997693|ref|ZP_08118805.1| acyl-CoA dehydrogenase [Pseudono... 204 2e-50 gi|339289753|gb|AEJ43863.1| L-carnitine dehydratase/bile acid-in... 204 2e-50 >gi|15610408|ref|NP_217789.1| hypothetical protein Rv3272 [Mycobacterium tuberculosis H37Rv] gi|15842862|ref|NP_337899.1| hypothetical protein MT3372 [Mycobacterium tuberculosis CDC1551] gi|148663135|ref|YP_001284658.1| hypothetical protein MRA_3313 [Mycobacterium tuberculosis H37Ra] 57 more sequence titles Length=394 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/394 (100%), Positives = 394/394 (100%), Gaps = 0/394 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP Sbjct 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS Sbjct 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH Sbjct 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR Sbjct 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 Query 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA Sbjct 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI Sbjct 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 Query 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP Sbjct 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 >gi|31794452|ref|NP_856945.1| hypothetical protein Mb3300 [Mycobacterium bovis AF2122/97] gi|31620048|emb|CAD95392.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] Length=394 Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/394 (99%), Positives = 394/394 (100%), Gaps = 0/394 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP Sbjct 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS Sbjct 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH Sbjct 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR Sbjct 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 Query 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA Sbjct 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAE+DLTLEVGRGADTI Sbjct 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAESDLTLEVGRGADTI 360 Query 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP Sbjct 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 >gi|289747090|ref|ZP_06506468.1| yfdE protein [Mycobacterium tuberculosis 02_1987] gi|294993787|ref|ZP_06799478.1| hypothetical protein Mtub2_04551 [Mycobacterium tuberculosis 210] gi|298526748|ref|ZP_07014157.1| acyl-CoA transferase [Mycobacterium tuberculosis 94_M4241A] gi|289687618|gb|EFD55106.1| yfdE protein [Mycobacterium tuberculosis 02_1987] gi|298496542|gb|EFI31836.1| acyl-CoA transferase [Mycobacterium tuberculosis 94_M4241A] gi|326902500|gb|EGE49433.1| hypothetical protein TBPG_00345 [Mycobacterium tuberculosis W-148] gi|339296099|gb|AEJ48210.1| hypothetical protein CCDC5079_3020 [Mycobacterium tuberculosis CCDC5079] gi|339299709|gb|AEJ51819.1| hypothetical protein CCDC5180_2982 [Mycobacterium tuberculosis CCDC5180] Length=394 Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/394 (99%), Positives = 394/394 (100%), Gaps = 0/394 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP Sbjct 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS Sbjct 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH Sbjct 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 +LAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR Sbjct 181 MLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 Query 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA Sbjct 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI Sbjct 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 Query 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP Sbjct 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 >gi|289759413|ref|ZP_06518791.1| yfdE protein [Mycobacterium tuberculosis T85] gi|289714977|gb|EFD78989.1| yfdE protein [Mycobacterium tuberculosis T85] Length=394 Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/394 (99%), Positives = 393/394 (99%), Gaps = 0/394 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP Sbjct 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLATYFLPNNRGKKSVTVDL TEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS Sbjct 61 PLATYFLPNNRGKKSVTVDLITEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH Sbjct 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 +LAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR Sbjct 181 MLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 Query 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA Sbjct 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI Sbjct 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 Query 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP Sbjct 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 >gi|121639161|ref|YP_979385.1| hypothetical protein BCG_3301 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991654|ref|YP_002646343.1| hypothetical protein JTY_3297 [Mycobacterium bovis BCG str. Tokyo 172] gi|121494809|emb|CAL73290.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774769|dbj|BAH27575.1| hypothetical protein JTY_3297 [Mycobacterium bovis BCG str. Tokyo 172] gi|341603200|emb|CCC65878.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=394 Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/394 (99%), Positives = 393/394 (99%), Gaps = 0/394 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP Sbjct 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS Sbjct 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH Sbjct 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR Sbjct 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 Query 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 RKGVGFATQPSDAFRTAD YIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA Sbjct 241 RKGVGFATQPSDAFRTADRYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAE+DLTLEVGRGADTI Sbjct 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAESDLTLEVGRGADTI 360 Query 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP Sbjct 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 >gi|340628254|ref|YP_004746706.1| hypothetical protein MCAN_32951 [Mycobacterium canettii CIPT 140010059] gi|340006444|emb|CCC45626.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=394 Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/394 (99%), Positives = 392/394 (99%), Gaps = 0/394 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP Sbjct 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS Sbjct 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNP LIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH Sbjct 121 RNPKLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR Sbjct 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 Query 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA Sbjct 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 ELTAELE ALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI Sbjct 301 ELTAELESALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 Query 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP Sbjct 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 >gi|289763461|ref|ZP_06522839.1| yfdE protein [Mycobacterium tuberculosis GM 1503] gi|289710967|gb|EFD74983.1| yfdE protein [Mycobacterium tuberculosis GM 1503] Length=363 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/370 (96%), Positives = 354/370 (96%), Gaps = 9/370 (2%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP Sbjct 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS Sbjct 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH Sbjct 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR Sbjct 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 Query 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA Sbjct 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLF-AENDLTLEVG-RGAD 358 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQ P F NDLTLEVG RG Sbjct 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQGRRHPPFPPRNDLTLEVGPRG-- 358 Query 359 TITVIRTPAR 368 RTP+R Sbjct 359 -----RTPSR 363 >gi|308232403|ref|ZP_07415938.2| hypothetical protein TMAG_02725 [Mycobacterium tuberculosis SUMu001] gi|308214142|gb|EFO73541.1| hypothetical protein TMAG_02725 [Mycobacterium tuberculosis SUMu001] Length=420 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/391 (89%), Positives = 353/391 (91%), Gaps = 0/391 (0%) Query 4 SNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLA 63 + P L GF + G G+ G + + P + + PGRPPLA Sbjct 30 ATPPNHLTGFGYWISPRTWPGRWPGRCWSTWGLKSSRWRRPAVKRPVRSPRCYPGRPPLA 89 Query 64 TYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNP 123 TYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNP Sbjct 90 TYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNP 149 Query 124 NLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLA 183 NLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLA Sbjct 150 NLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLA 209 Query 184 QAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKG 243 QAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKG Sbjct 210 QAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKG 269 Query 244 VGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELT 303 VGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELT Sbjct 270 VGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELT 329 Query 304 AELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVI 363 AELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVI Sbjct 330 AELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVI 389 Query 364 RTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 RTPARYASFRAVVTDPPPTAGEHNAVFLARP Sbjct 390 RTPARYASFRAVVTDPPPTAGEHNAVFLARP 420 >gi|240172494|ref|ZP_04751153.1| acyl-CoA transferase [Mycobacterium kansasii ATCC 12478] Length=394 Score = 630 bits (1625), Expect = 1e-178, Method: Compositional matrix adjust. Identities = 316/394 (81%), Positives = 359/394 (92%), Gaps = 0/394 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 M PAKPLDGFRVLDFTQNVAGPLAGQVL DLGAEVIK+EAPGGEAAR IT+VLPGRP Sbjct 1 MQNDRPAKPLDGFRVLDFTQNVAGPLAGQVLADLGAEVIKIEAPGGEAARHITAVLPGRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PL TYFLPNNRGKKSVTVDLTT A+QQ+LRLADTADV+LE FRPG ME++GLGP+DLR+ Sbjct 61 PLPTYFLPNNRGKKSVTVDLTTGAARQQILRLADTADVLLEGFRPGVMERMGLGPEDLRA 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNP LIYARL+A+GGNGPHG+RPG+DL+VAAEAGMTTGMPTP+GKPQIIPFQLVDNASGH Sbjct 121 RNPKLIYARLSAFGGNGPHGNRPGVDLMVAAEAGMTTGMPTPDGKPQIIPFQLVDNASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 VLAQAVLAALL+RER+GVAD V+VAMYDVAVGLQANQL MHLN+ ++D+PKPE P+ KR Sbjct 181 VLAQAVLAALLNRERHGVADTVRVAMYDVAVGLQANQLTMHLNKTSNDRPKPEQPPQPKR 240 Query 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 RKGVGFATQPSDAFR ADGY++ISAYVPKHWQ+LC+LIGRPDL++D+RF +QR+R+I+Y Sbjct 241 RKGVGFATQPSDAFRAADGYLLISAYVPKHWQQLCHLIGRPDLLDDERFVDQRARAIHYH 300 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 ELT EL+ ALA+KTA EWV+LLQ GLMACL +TWKQVVDTPLFAEN+L +EVGRG D + Sbjct 301 ELTDELQSALAAKTAAEWVELLQEAGLMACLPYTWKQVVDTPLFAENELAVEVGRGDDAV 360 Query 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 TVIRTPARY+SF AVV DPPPTAGEHN +FL P Sbjct 361 TVIRTPARYSSFSAVVADPPPTAGEHNDIFLTEP 394 >gi|183981289|ref|YP_001849580.1| acyl-CoA transferase [Mycobacterium marinum M] gi|183174615|gb|ACC39725.1| acyl-CoA transferase [Mycobacterium marinum M] Length=395 Score = 624 bits (1610), Expect = 7e-177, Method: Compositional matrix adjust. Identities = 308/392 (79%), Positives = 349/392 (90%), Gaps = 1/392 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 MP NPAKPLDGFRVLDFTQNVAGPLAGQVL DLGAEVIKVEAPGGEAAR IT+VLP RP Sbjct 1 MPEGNPAKPLDGFRVLDFTQNVAGPLAGQVLADLGAEVIKVEAPGGEAARHITAVLPHRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLATYFLPNNRGKKSV+VDL+T+ A++Q+LRLADTADVVLE FRPG ME++GLGP+DLR+ Sbjct 61 PLATYFLPNNRGKKSVSVDLSTDTARRQILRLADTADVVLEGFRPGVMERMGLGPEDLRA 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNP LIYARL+A+GGNGPHG+RPG+DL+VAAEAGMTTGMPTP+GKPQIIPFQLVDNASGH Sbjct 121 RNPKLIYARLSAFGGNGPHGTRPGVDLMVAAEAGMTTGMPTPDGKPQIIPFQLVDNASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPK-PEPAPKAK 239 VLAQAVLAALL+RER+GVAD V+VAMYDVAVGLQANQL MHLNR +SD PK PE P Sbjct 181 VLAQAVLAALLNRERHGVADTVRVAMYDVAVGLQANQLTMHLNRPSSDAPKRPEQTPAGA 240 Query 240 RRKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINY 299 RRK V FATQPSDAFR ADGY++ISAYVPKHWQ+LC +IGRPDL++D+RF +QR+R+INY Sbjct 241 RRKRVAFATQPSDAFRAADGYLLISAYVPKHWQRLCEIIGRPDLLDDERFIDQRARAINY 300 Query 300 AELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADT 359 AELT ELE ALA+KTA +WV+LL GLMACLA+TWKQVV TPLFAEN+L L+VG G D Sbjct 301 AELTEELESALAAKTAAQWVELLHEGGLMACLAYTWKQVVTTPLFAENELALQVGSGDDA 360 Query 360 ITVIRTPARYASFRAVVTDPPPTAGEHNAVFL 391 +TVIRTPARY+SF AV+ +PP GEHN L Sbjct 361 VTVIRTPARYSSFSAVLAEPPAATGEHNETLL 392 >gi|118618089|ref|YP_906421.1| acyl-CoA transferase [Mycobacterium ulcerans Agy99] gi|118570199|gb|ABL04950.1| acyl-CoA transferase [Mycobacterium ulcerans Agy99] Length=395 Score = 623 bits (1606), Expect = 2e-176, Method: Compositional matrix adjust. Identities = 308/392 (79%), Positives = 349/392 (90%), Gaps = 1/392 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 MP NPAKPLDGFRVLDFTQNVAGPLAGQVL DLGAEVIKVEAPGGEAAR IT+VLP RP Sbjct 1 MPEGNPAKPLDGFRVLDFTQNVAGPLAGQVLADLGAEVIKVEAPGGEAARHITAVLPHRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLATYFLPNNRGKKSV+VDL+T+ A++Q+LRLADTADVVLE FRPG ME++GLGP+DLR+ Sbjct 61 PLATYFLPNNRGKKSVSVDLSTDTARRQILRLADTADVVLEGFRPGVMERMGLGPEDLRA 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNP LIYARL+A+GGNGPHG+RPG+DL+VAAEAGMTTGMPTP+GKPQIIPFQLVDNASGH Sbjct 121 RNPKLIYARLSAFGGNGPHGTRPGVDLMVAAEAGMTTGMPTPDGKPQIIPFQLVDNASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPK-PEPAPKAK 239 VLAQAVLAALL+RER+GVAD V+VAMYDVAVGLQANQL MHLNR +SD PK PE P Sbjct 181 VLAQAVLAALLNRERHGVADTVRVAMYDVAVGLQANQLTMHLNRPSSDAPKRPEQTPAGA 240 Query 240 RRKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINY 299 RRK V FATQPSDAFR ADGY++ISAYVPKHWQ+LC +IG+PDL++D+RF +QR+R+INY Sbjct 241 RRKRVAFATQPSDAFRAADGYLLISAYVPKHWQRLCEIIGQPDLLDDERFIDQRARAINY 300 Query 300 AELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADT 359 AELT ELE ALA+KTA +WV+LL GLMACLA+TWKQVV TPLFAEN+L L+V G D Sbjct 301 AELTEELESALAAKTAAQWVELLHEGGLMACLAYTWKQVVTTPLFAENELALQVDSGDDA 360 Query 360 ITVIRTPARYASFRAVVTDPPPTAGEHNAVFL 391 +TVIRTPARY+SF AV+ DPPP GEHN L Sbjct 361 VTVIRTPARYSSFSAVLADPPPATGEHNETLL 392 >gi|296168931|ref|ZP_06850600.1| YfdE protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896400|gb|EFG76053.1| YfdE protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=397 Score = 595 bits (1534), Expect = 4e-168, Method: Compositional matrix adjust. Identities = 306/394 (78%), Positives = 344/394 (88%), Gaps = 1/394 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 M S PAKPLDGFRVLDFTQN+AGPLAGQVL DLGAEVIKVEAP GEAARQIT+VLPGRP Sbjct 1 MADSTPAKPLDGFRVLDFTQNIAGPLAGQVLADLGAEVIKVEAPLGEAARQITAVLPGRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PL T FLP+NRGKKSV VDLT ++A+QQ+LRL DTADVVLE FRPG ME++GLGPD+LR+ Sbjct 61 PLPTLFLPHNRGKKSVAVDLTDDEARQQILRLVDTADVVLEGFRPGVMERMGLGPDELRA 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNP L+YARL+AYGGNGPHGSRPG+DL+VAAE+GMTTGMPTP GKPQIIPFQLVD ASGH Sbjct 121 RNPRLVYARLSAYGGNGPHGSRPGVDLMVAAESGMTTGMPTPTGKPQIIPFQLVDAASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 VLAQAVLAALL+RER+GVADVV+VAMYDVAV LQA QL +HLN+ S+ P P+ APK K+ Sbjct 181 VLAQAVLAALLNRERHGVADVVRVAMYDVAVNLQAGQLTIHLNK-PSEAPGPDAAPKPKK 239 Query 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 RKGVGFATQPSDAFR ADGY+VISAYVPKHW KLC LIGRPDL+ D+RF +QRSR++NY Sbjct 240 RKGVGFATQPSDAFRAADGYLVISAYVPKHWAKLCQLIGRPDLLTDERFIDQRSRAMNYP 299 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI 360 ELT ELE ALA+KTA EWV+LLQ GLMACLA+TWKQVVDTPLFAEN+L L VG G D I Sbjct 300 ELTEELESALAAKTAAEWVELLQQGGLMACLAYTWKQVVDTPLFAENELALRVGAGDDAI 359 Query 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 TV+R PARY+SF AV +PPP G+HN FL P Sbjct 360 TVVRMPARYSSFDAVAAEPPPAPGQHNEEFLTAP 393 >gi|254819497|ref|ZP_05224498.1| hypothetical protein MintA_06209 [Mycobacterium intracellulare ATCC 13950] Length=398 Score = 589 bits (1518), Expect = 3e-166, Method: Compositional matrix adjust. Identities = 296/395 (75%), Positives = 339/395 (86%), Gaps = 2/395 (0%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 MP S P KPLDGFRVLDFTQN+AGP+AGQVL DLGAEVIKVEAP GEAAR IT+VLPGRP Sbjct 1 MPNSKPPKPLDGFRVLDFTQNIAGPMAGQVLADLGAEVIKVEAPVGEAARHITAVLPGRP 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLAT FLP+NRGKKSV DL ++AKQQ++RL DTADVVLE FRPG ME++GLGPD+L+S Sbjct 61 PLATLFLPHNRGKKSVMADLRDDEAKQQIMRLVDTADVVLEGFRPGVMERMGLGPDELQS 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNP LIYARL+AYGGNGP GSRPG+DL+VAAE+GMTTGMPTP GKPQIIPFQLVD ASGH Sbjct 121 RNPKLIYARLSAYGGNGPEGSRPGVDLMVAAESGMTTGMPTPSGKPQIIPFQLVDAASGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKP-EPAPKAK 239 VLAQAVLAALL+RER+GVADVV+VAMYDVAV LQA+QL +HLN+ + +PKP + PK K Sbjct 181 VLAQAVLAALLNRERHGVADVVRVAMYDVAVSLQASQLTIHLNKPNA-EPKPSDSTPKPK 239 Query 240 RRKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINY 299 RRKGVGFATQPSDAF+ ADGY+VISAYVPKHW KLC +IGRPD+ +D+RF +QR+R++NY Sbjct 240 RRKGVGFATQPSDAFKAADGYLVISAYVPKHWDKLCEIIGRPDMRDDERFIDQRARALNY 299 Query 300 AELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADT 359 ELT ELE ALA+KTA EWV+LLQ GLMAC A+TWKQVV T LFAEN+L L VG G D Sbjct 300 PELTEELEKALAAKTADEWVRLLQDGGLMACHAYTWKQVVGTALFAENELALPVGEGEDA 359 Query 360 ITVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 +TVIRTPARY+SF A TDPPP G+H +L P Sbjct 360 VTVIRTPARYSSFDADATDPPPALGQHTEEYLGAP 394 >gi|333991666|ref|YP_004524280.1| acyl-CoA transferase [Mycobacterium sp. JDM601] gi|333487634|gb|AEF37026.1| acyl-CoA transferase [Mycobacterium sp. JDM601] Length=397 Score = 587 bits (1513), Expect = 1e-165, Method: Compositional matrix adjust. Identities = 301/386 (78%), Positives = 329/386 (86%), Gaps = 0/386 (0%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFL 67 KPLDGFRVLDFTQNVAGPLAGQVL DLGAEVIKVEAPGGEA+RQITSVLPGRPPLA YFL Sbjct 8 KPLDGFRVLDFTQNVAGPLAGQVLADLGAEVIKVEAPGGEASRQITSVLPGRPPLAVYFL 67 Query 68 PNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIY 127 PNNRGKKSVT DL + KQQ+L L DTADVVLEAFRPG ME+LGLGPD+LR+RNP L+Y Sbjct 68 PNNRGKKSVTADLRADGPKQQILSLVDTADVVLEAFRPGVMERLGLGPDELRARNPKLVY 127 Query 128 ARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVL 187 ARL+AYGGNGP+G RPG+DL+VAAEAGMT+GM TP+GKPQIIPFQLVDNASGHVLAQAVL Sbjct 128 ARLSAYGGNGPNGDRPGVDLMVAAEAGMTSGMRTPDGKPQIIPFQLVDNASGHVLAQAVL 187 Query 188 AALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFA 247 AALL+RER+GVADVV+VAMYDVAV LQANQL +HLNR A+ P AKRRKGVGFA Sbjct 188 AALLNRERHGVADVVEVAMYDVAVALQANQLTVHLNRPAAAAAGPAAGQPAKRRKGVGFA 247 Query 248 TQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELE 307 TQPSDAFRTADG++VISAY PKHW LC IGRPDLVED RFA+QRSRSINYAELT ELE Sbjct 248 TQPSDAFRTADGHVVISAYTPKHWDILCRTIGRPDLVEDPRFADQRSRSINYAELTDELE 307 Query 308 LALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVIRTPA 367 LAS T+ EWV LQ NGLMACLA+TWKQVVDT LF EN L L +G G D +TV+RTPA Sbjct 308 TTLASATSAEWVARLQRNGLMACLANTWKQVVDTALFTENRLALRIGDGDDAVTVVRTPA 367 Query 368 RYASFRAVVTDPPPTAGEHNAVFLAR 393 RY SF AV T PP G+HNA L + Sbjct 368 RYGSFEAVATGAPPAPGQHNADLLGQ 393 >gi|118462866|ref|YP_883378.1| YfdE protein [Mycobacterium avium 104] gi|118164153|gb|ABK65050.1| YfdE protein [Mycobacterium avium 104] Length=406 Score = 587 bits (1512), Expect = 2e-165, Method: Compositional matrix adjust. Identities = 294/397 (75%), Positives = 338/397 (86%), Gaps = 4/397 (1%) Query 2 PTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPP 61 P P KPLDGFRVLDFTQN+AGP+AGQVL DLGAEVIK+EAP GEAAR IT+VLPGRPP Sbjct 6 PNGKPPKPLDGFRVLDFTQNIAGPMAGQVLADLGAEVIKIEAPIGEAARHITAVLPGRPP 65 Query 62 LATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSR 121 LAT FLP+NRGKKSV DL ++AKQ++LRL DTADVVLE FRPG ME++GLGP++L+ R Sbjct 66 LATLFLPHNRGKKSVLADLRDDEAKQRILRLVDTADVVLEGFRPGVMERMGLGPEELQGR 125 Query 122 NPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHV 181 NP L+YARL+AYGGNGP GSRPG+DL+VAAE+GMTTGMPTP GKPQIIPFQLVD ASGHV Sbjct 126 NPRLVYARLSAYGGNGPEGSRPGVDLMVAAESGMTTGMPTPTGKPQIIPFQLVDAASGHV 185 Query 182 LAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRR 241 LAQAVLAALL+RER+GVADVV+VAMYDVAV LQA+QL +HLN+ +D + A K KRR Sbjct 186 LAQAVLAALLNRERHGVADVVRVAMYDVAVSLQASQLTIHLNKPNADHKPSDSASKPKRR 245 Query 242 KGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAE 301 KGVGFATQPSDAF+ ADGY+VISAYVPKHW KLC +IGRPDL +D+RFA+QRSR++NY E Sbjct 246 KGVGFATQPSDAFKAADGYLVISAYVPKHWDKLCEVIGRPDLRDDERFADQRSRALNYPE 305 Query 302 LTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTIT 361 LT ELE ALA+KTA EWV+LLQA GLMAC A+TWKQVV TPLFAEN+L L+VG GAD +T Sbjct 306 LTEELEKALAAKTADEWVRLLQAAGLMACHAYTWKQVVGTPLFAENELALQVGEGADAVT 365 Query 362 VIRTPARYASFRAV----VTDPPPTAGEHNAVFLARP 394 VIRTPARY+SF A TDPPP G+H +L P Sbjct 366 VIRTPARYSSFEAASAGWATDPPPALGQHTEEYLGAP 402 >gi|41409484|ref|NP_962320.1| hypothetical protein MAP3386 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398315|gb|AAS05936.1| hypothetical protein MAP_3386 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459650|gb|EGO38585.1| putative acyl-CoA transferase/carnitine dehydratase [Mycobacterium avium subsp. paratuberculosis S397] Length=406 Score = 584 bits (1506), Expect = 7e-165, Method: Compositional matrix adjust. Identities = 293/397 (74%), Positives = 337/397 (85%), Gaps = 4/397 (1%) Query 2 PTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPP 61 P P KPLDGFRVLDFTQN+AGP+AGQVL DLGAEVIK+EAP GEAAR IT+VLPGRPP Sbjct 6 PNGKPPKPLDGFRVLDFTQNIAGPMAGQVLADLGAEVIKIEAPIGEAARHITAVLPGRPP 65 Query 62 LATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSR 121 LAT FLP+NRGKKSV DL ++AKQ++LRL DTADVVLE FRPG ME++GLGP++L+ R Sbjct 66 LATLFLPHNRGKKSVLADLRDDEAKQRILRLVDTADVVLEGFRPGVMERMGLGPEELQGR 125 Query 122 NPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHV 181 NP L+YARL+AYGGNGP GSRPG+DL+VAAE+GMTTGMPTP GKPQIIPFQLVD ASGHV Sbjct 126 NPRLVYARLSAYGGNGPEGSRPGVDLMVAAESGMTTGMPTPTGKPQIIPFQLVDAASGHV 185 Query 182 LAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRR 241 LAQAVLAALL+RER+GVADVV+VAMYDVAV LQA+QL +HLN+ +D + A K KRR Sbjct 186 LAQAVLAALLNRERHGVADVVRVAMYDVAVSLQASQLTIHLNKPNADHKPSDSASKPKRR 245 Query 242 KGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAE 301 KGVGFATQPSDAF+ ADGY+VISAYVPKHW KLC +IGRPDL +D+RFA+QRSR++NY E Sbjct 246 KGVGFATQPSDAFKAADGYLVISAYVPKHWDKLCEVIGRPDLRDDERFADQRSRALNYPE 305 Query 302 LTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTIT 361 LT ELE ALA+KTA EWV+LLQ GLMAC A+TWKQVV TPLFAEN+L L+VG GAD +T Sbjct 306 LTEELEKALAAKTADEWVRLLQDAGLMACHAYTWKQVVGTPLFAENELALQVGEGADAVT 365 Query 362 VIRTPARYASFRAV----VTDPPPTAGEHNAVFLARP 394 VIRTPARY+SF A TDPPP G+H +L P Sbjct 366 VIRTPARYSSFEAASAGWATDPPPALGQHTEEYLGAP 402 >gi|342861477|ref|ZP_08718124.1| hypothetical protein MCOL_21431 [Mycobacterium colombiense CECT 3035] gi|342130966|gb|EGT84255.1| hypothetical protein MCOL_21431 [Mycobacterium colombiense CECT 3035] Length=401 Score = 583 bits (1503), Expect = 2e-164, Method: Compositional matrix adjust. Identities = 296/393 (76%), Positives = 342/393 (88%), Gaps = 1/393 (0%) Query 2 PTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPP 61 P S PAKPLDGFRVLDFTQN+AGP+AGQVL DLGAEVIK+EAP GEAAR IT+VLPGRPP Sbjct 6 PNSKPAKPLDGFRVLDFTQNIAGPMAGQVLADLGAEVIKIEAPVGEAARHITAVLPGRPP 65 Query 62 LATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSR 121 LAT FLP+NRGKKSV DL +++AKQQ+LRL DTADVVLE FRPG ME++GLGPD+L++R Sbjct 66 LATLFLPHNRGKKSVMADLRSDEAKQQILRLVDTADVVLEGFRPGVMERMGLGPDELQAR 125 Query 122 NPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHV 181 NP LIYARL+AYGGNGP GSRPG+DL+VAAE+GMTTGMPTP GKPQIIPFQLVD ASGHV Sbjct 126 NPKLIYARLSAYGGNGPEGSRPGVDLMVAAESGMTTGMPTPTGKPQIIPFQLVDAASGHV 185 Query 182 LAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRR 241 LAQAVLAALL+RER+GVADVV+VAMYDVAV LQA+QL +HLN+ S+ PKP+ APKAK+R Sbjct 186 LAQAVLAALLNRERHGVADVVRVAMYDVAVSLQASQLTIHLNK-PSEAPKPDAAPKAKKR 244 Query 242 KGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAE 301 KGVGFATQPSDAF+ ADGY+VISAYVPKHW KLC +IGRPD+ +D+RF +QR+R++NY E Sbjct 245 KGVGFATQPSDAFKAADGYLVISAYVPKHWDKLCEIIGRPDMRDDERFIDQRARALNYPE 304 Query 302 LTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTIT 361 LT ELE ALA+KTA EWV+LLQ GLMAC A+TWKQVV T LFAEN+L L VG GAD +T Sbjct 305 LTEELEKALAAKTAGEWVRLLQEGGLMACHAYTWKQVVGTALFAENELALPVGEGADEVT 364 Query 362 VIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 VIRTPARY+SF A +PPP G+H +L P Sbjct 365 VIRTPARYSSFDAAAAEPPPALGQHTEEYLGAP 397 >gi|254776672|ref|ZP_05218188.1| YfdE protein [Mycobacterium avium subsp. avium ATCC 25291] Length=388 Score = 566 bits (1459), Expect = 2e-159, Method: Compositional matrix adjust. Identities = 284/384 (74%), Positives = 329/384 (86%), Gaps = 4/384 (1%) Query 15 VLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLPNNRGKK 74 +LDFTQN+AGP+AGQVL DLGAEVIK+EAP GEAAR IT+VLPGRPPLAT FLP+NRGKK Sbjct 1 MLDFTQNIAGPMAGQVLADLGAEVIKIEAPIGEAARHITAVLPGRPPLATLFLPHNRGKK 60 Query 75 SVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYARLTAYG 134 SV DL ++AKQ++LRL DTADVVLE FRPG ME++GLGP++L+ RNP L+YARL+AYG Sbjct 61 SVLADLRDDEAKQRILRLVDTADVVLEGFRPGVMERMGLGPEELQGRNPRLVYARLSAYG 120 Query 135 GNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVLAALLHRE 194 GNGP GSRPG+DL+VAAE+GMTTGMPTP GKPQIIPFQLVD ASGHVLAQAVLAALL+RE Sbjct 121 GNGPEGSRPGVDLMVAAESGMTTGMPTPTGKPQIIPFQLVDAASGHVLAQAVLAALLNRE 180 Query 195 RNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFATQPSDAF 254 R+GVADVV+VAMYDVAV LQA+QL +HLN+ +D + A K KRRKGVGFATQPSDAF Sbjct 181 RHGVADVVRVAMYDVAVSLQASQLTIHLNKPNADHKPSDSASKPKRRKGVGFATQPSDAF 240 Query 255 RTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELELALASKT 314 + ADGY+VISAYVPKHW KLC +IGRPDL +D+RFA+QRSR++NY ELT ELE ALA+KT Sbjct 241 KAADGYLVISAYVPKHWDKLCEVIGRPDLRDDERFADQRSRALNYPELTEELEKALAAKT 300 Query 315 ATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVIRTPARYASFRA 374 A EWV+LLQA GLMAC A+TWKQVV TPLFAEN+L L+VG GAD +TVIRTPARY+SF A Sbjct 301 ADEWVRLLQAAGLMACHAYTWKQVVGTPLFAENELALQVGEGADAVTVIRTPARYSSFEA 360 Query 375 V----VTDPPPTAGEHNAVFLARP 394 TDPPP G+H +L P Sbjct 361 ASAGWATDPPPALGQHTEEYLGAP 384 >gi|226304279|ref|YP_002764237.1| hypothetical protein RER_07900 [Rhodococcus erythropolis PR4] gi|226183394|dbj|BAH31498.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=403 Score = 550 bits (1416), Expect = 2e-154, Method: Compositional matrix adjust. Identities = 274/399 (69%), Positives = 319/399 (80%), Gaps = 5/399 (1%) Query 1 MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP 60 M +SN +PLDG+RVLDFTQNVAGPLAGQVL DLGAEVIK+EAPGGE+AR+I SV+PGR Sbjct 1 MASSNGPRPLDGYRVLDFTQNVAGPLAGQVLADLGAEVIKIEAPGGESARRIVSVVPGRK 60 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 PLATYFLPNNRGKKSV VDL +++ ++ +LRLAD+ADVVLEAFRPG MEKLGLGPD L+ Sbjct 61 PLATYFLPNNRGKKSVMVDLRSDEGRENVLRLADSADVVLEAFRPGVMEKLGLGPDTLQQ 120 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 RNP L+YARL+AYGGNG + SRPG+DL+V AEAGMTTG+ PEG PQIIPFQLVD A+GH Sbjct 121 RNPALVYARLSAYGGNGVNSSRPGLDLMVQAEAGMTTGLRAPEGGPQIIPFQLVDGATGH 180 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNR---AASDQPKPEPAPK 237 V AQAVLAALL+RER+GVADVV+VAMYDVAV LQANQL +HLN+ AA KP PA Sbjct 181 VFAQAVLAALLNRERHGVADVVKVAMYDVAVSLQANQLTLHLNKDTEAARSATKPAPAVG 240 Query 238 A--KRRKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSR 295 A K RK V FATQPSDAF+ ADG++V+SAYVPKHW LC +IGRPDL D+RF++QR R Sbjct 241 ADGKPRKQVAFATQPSDAFKAADGHLVLSAYVPKHWVLLCEVIGRPDLATDERFSDQRLR 300 Query 296 SINYAELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR 355 ++NY EL ELE ALA +TA EWV L GLMA LA+ WKQVV TPLF EN+L + +G Sbjct 301 AVNYYELKDELEAALAERTAAEWVAALHERGLMATLAYNWKQVVQTPLFVENELAVSMGE 360 Query 356 GADTITVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP 394 G +T V+RTPAR+ASF PP GEHN FL P Sbjct 361 GENTQVVVRTPARFASFTPAAISAPPAPGEHNDEFLVVP 399 >gi|331697020|ref|YP_004333259.1| formyl-CoA transferase [Pseudonocardia dioxanivorans CB1190] gi|326951709|gb|AEA25406.1| Formyl-CoA transferase [Pseudonocardia dioxanivorans CB1190] Length=386 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 195/384 (51%), Positives = 249/384 (65%), Gaps = 7/384 (1%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFL 67 +P+ G RVLD T NVAGPLAGQVLVDLGAEV+K+E PGGEA R I S +PG+ L YFL Sbjct 5 RPMSGMRVLDLTSNVAGPLAGQVLVDLGAEVVKIEPPGGEAGRNIRSTIPGQEELRPYFL 64 Query 68 PNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIY 127 P++RGKKSV +DL ++L LADTADV ++ FRPG +++LGLG D LR RNP L++ Sbjct 65 PHHRGKKSVVLDLRNADDVTRLLALADTADVFVQGFRPGVLDRLGLGADVLRRRNPRLVH 124 Query 128 ARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVL 187 A L A+ G+G RPGID ++ AE+G+ TG+ +G+P + +VD A+GHVLAQA+L Sbjct 125 ASLCAFSGDGEQHRRPGIDALIQAESGLLTGLTGADGRPLLPAPTVVDAAAGHVLAQAIL 184 Query 188 AALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFA 247 AALL RER+G DVV+VA+YDVAV LQA + L+ A PE A + + A Sbjct 185 AALLARERHGEGDVVEVALYDVAVSLQAPHITRQLHTA------PEHAHLTETGR-ASLA 237 Query 248 TQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELE 307 PS FR ADG++++ AYVP+HW L +GRPDL D RF +Q R+ + EL A LE Sbjct 238 VAPSGPFRAADGWLMLFAYVPRHWTLLTEALGRPDLRTDPRFVDQVERARHPVELAAALE 297 Query 308 LALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVIRTPA 367 ALA T EWVQ+L A G+MA TW+ V+ + F E L + VG GA T +RTPA Sbjct 298 DALAGHTVAEWVQVLTAAGVMASPVRTWRSVIRSAAFTEAALAVTVGEGARTELAVRTPA 357 Query 368 RYASFRAVVTDPPPTAGEHNAVFL 391 RY F T P P GEH L Sbjct 358 RYRGFVPAGTTPTPRLGEHTDAVL 381 >gi|339323163|ref|YP_004682057.1| hypothetical protein CNE_2c18690 [Cupriavidus necator N-1] gi|338169771|gb|AEI80825.1| hypothetical protein CNE_2c18690 [Cupriavidus necator N-1] Length=411 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 135/385 (36%), Positives = 202/385 (53%), Gaps = 17/385 (4%) Query 10 LDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLPN 69 LDG V+DFTQ AGP +L D+GA VIKVE PGGE R + G + F Sbjct 6 LDGLTVIDFTQIGAGPTCTMLLADMGARVIKVEPPGGELGRGLGPGWLGDD--SALFHGF 63 Query 70 NRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYAR 129 NR K V +DL + RL AD+V+E+ RPG ME+LGLG L + +P LIY Sbjct 64 NRNKLGVALDLKSADGVAVARRLIAGADIVVESMRPGVMERLGLGHAQLANAHPALIYCS 123 Query 130 LTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVLAA 189 ++AYG GPH R G+D ++ A++G+ + + P+G+P + +VD +G+V VLA Sbjct 124 ISAYGQEGPHAHRAGVDGIMQADSGLMSLIGLPDGEPCKVQAPVVDVTTGYVACVGVLAK 183 Query 190 LLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFATQ 249 L R R+G+ + V + + A+ LQ + + + +D PE R + Sbjct 184 LAQRARDGLGGHLDVNLLNAALALQQSSITSY----CADGKLPE------RVGSAAPYSA 233 Query 250 PSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELELA 309 P+ AFRTADG+++++AY+P+ W++LC ++GRP+L +D RFA R N A + L Sbjct 234 PNQAFRTADGWVMVAAYMPERWRRLCDVVGRPELADDPRFATSPLRVANRAAMVEALTSV 293 Query 310 LASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVIRTPA-- 367 + T W+ LLQ ++ T++ V+ P A N + V DT+ IR P Sbjct 294 FITSTTDTWLALLQDADILCAPVATYEDVMAHPQVAANRMVQRVRH--DTLGEIRMPGFP 351 Query 368 -RYASFRAVVTDPPPTAGEHNAVFL 391 A A+ + P P G+H L Sbjct 352 INSAQENALPSRPAPACGQHTQAVL 376 >gi|220923392|ref|YP_002498694.1| L-carnitine dehydratase/bile acid-inducible protein F [Methylobacterium nodulans ORS 2060] gi|219947999|gb|ACL58391.1| L-carnitine dehydratase/bile acid-inducible protein F [Methylobacterium nodulans ORS 2060] Length=406 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 138/388 (36%), Positives = 208/388 (54%), Gaps = 23/388 (5%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPL----A 63 + LDG RV+DF+Q AGPL+ +L DLGA+VIK+E P G+ R + PP + Sbjct 20 RTLDGLRVIDFSQVAAGPLSTMILADLGADVIKIEPPTGDIGRTLG------PPFIEGES 73 Query 64 TYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNP 123 T FL NR K+SVT+DL E+ + + L TAD+++E+FRPG ++LG+G R+ NP Sbjct 74 TVFLSLNRNKRSVTLDLKCEEGRARARALIATADILVESFRPGVADRLGIGFQAARAINP 133 Query 124 NLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLA 183 LIY ++AYG +G +PG+D VV A +G+ + + P + ++D +G+ A Sbjct 134 RLIYCSISAYGQHGSWSHKPGVDGVVQAVSGLMSVIGHEGEPPSKVQAPIIDMVTGYHAA 193 Query 184 QAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKG 243 A+LAA+ R V + V M+ AV LQ L +L + P + G Sbjct 194 LAILAAVNQRAAGSVPGHLDVNMFTSAVMLQQVTLSSYLT--TGELP-------VRCGSG 244 Query 244 VGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELT 303 +AT P++A++TADGY++++AY P+ W++LC + RPDL +D RF R N LT Sbjct 245 APYAT-PNEAYQTADGYVLVAAYQPERWRRLCVALDRPDLADDPRFGTLSERMANRDALT 303 Query 304 AELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVI 363 AEL A + EWV L+ ++ + V PL AE+ + V A V+ Sbjct 304 AELTGAFRHRPTGEWVARLEGADIICAAVSDYDDVASLPLLAESGVLTTVHHPAAGHIVM 363 Query 364 RTPARYASFRAVVT-DPPPTAGEHNAVF 390 P R++ PPP GEHN++ Sbjct 364 --PGFAIGGRSMAARRPPPRLGEHNSLL 389 >gi|116695844|ref|YP_841420.1| hypothetical protein H16_B1908 [Ralstonia eutropha H16] gi|113530343|emb|CAJ96690.1| conserved hypothetical protein [Ralstonia eutropha H16] Length=411 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 135/385 (36%), Positives = 204/385 (53%), Gaps = 17/385 (4%) Query 10 LDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLPN 69 LDG V+DFTQ AGP +L D+GA VIKVE PGGE R + G + F Sbjct 6 LDGLTVIDFTQIGAGPTCTMLLADMGARVIKVEPPGGEMGRGLGPGWLGDD--SALFHGF 63 Query 70 NRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYAR 129 NR K V +DL + RL AD+V+E+ RPG ME+LGLG L +P LIY Sbjct 64 NRNKLGVALDLKSADGVAVARRLIVGADIVVESMRPGVMERLGLGHAQLADEHPALIYCS 123 Query 130 LTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVLAA 189 ++AYG GP+ SR G+D ++ A++G+ + + P+G+P + +VD +G+V + VLA Sbjct 124 ISAYGQEGPYASRAGVDGIMQADSGLMSLIGLPDGEPCKVQAPVVDVMTGYVASVGVLAK 183 Query 190 LLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFATQ 249 L R R+G+ + V + + A+ LQ + + + +D PE R + Sbjct 184 LAQRARDGLGGHLDVNLLNAALALQQSSITSY----CADGQLPE------RVGSAAPYSA 233 Query 250 PSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELELA 309 P+ AFRTADG+++++AY+P+ W++LC ++GRP+L D RFA R +N A + L A Sbjct 234 PNQAFRTADGWVMVAAYMPERWRRLCDVLGRPELAGDPRFATSPLRVVNRAAMVEVLTSA 293 Query 310 LASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVIRTPA-- 367 ++ W+ LLQ ++ T++ V+ P A N + V DT+ IR P Sbjct 294 FVTRATDTWLALLQDADILCAPVATYEDVMAHPQVAANRMVQRVRH--DTLGEIRMPGFP 351 Query 368 -RYASFRAVVTDPPPTAGEHNAVFL 391 A A+ + P P G+H L Sbjct 352 INSAQENALPSRPAPACGQHTQAVL 376 >gi|302880821|ref|XP_003039341.1| hypothetical protein NECHADRAFT_98391 [Nectria haematococca mpVI 77-13-4] gi|256720168|gb|EEU33628.1| hypothetical protein NECHADRAFT_98391 [Nectria haematococca mpVI 77-13-4] Length=439 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 134/394 (35%), Positives = 209/394 (54%), Gaps = 22/394 (5%) Query 9 PLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAP-GGEAARQITSVLPGR------PP 61 PL G ++LD T+ +AGP Q+L D GA+V+KVE P GG+ R V + P Sbjct 38 PLSGVKILDLTRVLAGPFCTQILADYGADVVKVEHPRGGDDTRLWREVGEDKIWKSRAPG 97 Query 62 LATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSR 121 + YF NR K+S++V+L E+ ++ +L+LA ADVV+E F PG +++LGLG L++ Sbjct 98 TSIYFNTVNRNKRSISVNLKNEKGREIILQLAHEADVVVENFIPGKLDRLGLGYQALKAA 157 Query 122 NPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHV 181 NP++I A ++ YG +GP+ +R G D+V AAE G+ +G P LVD +G Sbjct 158 NPSIILASISGYGADGPYATRAGYDVVGAAEGGLLHVTGEADGPPTKPGVGLVDMCTGLY 217 Query 182 LAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRR 241 L A+++ALL R++ GV + ++++ V + AN M +N K RR Sbjct 218 LHGAIVSALLARQKTGVGQKLDTSLFEATVSILANVGMSWVN-----------LEKEARR 266 Query 242 KGVGF-ATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 G A P +AFRT DG +VI A + +Q LC L+G DL D R+ + +R +N Sbjct 267 WGTAHPAIVPYEAFRTKDGSLVIGAVNDRQFQNLCQLLGDRDLATDPRYVDNSARVLNRK 326 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRG---A 357 EL L+ KT EW +L+ +G+ +T + V P + V +G A Sbjct 327 ELKQALDTLFMKKTTGEWETVLEGSGMPYGPINTLENVFSHPQALARHMVETVEQGAAVA 386 Query 358 DTITVIRTPARYASFRAVVTDPPPTAGEHNAVFL 391 TI V+ P +++ + + PP+ G+H + L Sbjct 387 GTIKVLGIPVKFSETKPSIRGGPPSLGQHTNLIL 420 >gi|256378201|ref|YP_003101861.1| L-carnitine dehydratase/bile acid-inducible protein F [Actinosynnema mirum DSM 43827] gi|255922504|gb|ACU38015.1| L-carnitine dehydratase/bile acid-inducible protein F [Actinosynnema mirum DSM 43827] Length=407 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 143/399 (36%), Positives = 211/399 (53%), Gaps = 17/399 (4%) Query 1 MPTSNP-AKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPG-GEAARQI-TSVLP 57 M + NP +PL G RVLD + +AGP AG L LGA+V+KVE PG G+ ARQ+ S Sbjct 1 MTSENPPERPLTGVRVLDLSNVLAGPYAGYQLALLGADVVKVEVPGVGDLARQLGASAEL 60 Query 58 GRPPLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDD 117 R L FL N K+S+T++L + + K+ + RL +ADV++E FRPG +E+LG G D Sbjct 61 NRRRLGASFLAQNAQKRSLTLNLKSSRGKEVLRRLVQSADVLVENFRPGVLERLGFGWDA 120 Query 118 LRSRNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNA 177 LR NP L+Y ++ +G GP ++P D ++ +GM + T P + + D Sbjct 121 LRELNPRLVYCAISGFGQTGPLRAKPAYDQIIQGYSGMMSVTGTTGTAPLRAGYPIADVL 180 Query 178 SGHVLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPK 237 G A AV +AL+ RER GV + V+M + AV + HL A P+P Sbjct 181 GGLAAAFAVSSALVGRERTGVGCSIDVSMLETAVTAMGWVVSNHL--IAGQAPRPLGNDN 238 Query 238 AKRRKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSI 297 PS FRT+DG + I+A + ++ LC +GRP+LV D RFAE+ SR Sbjct 239 GT--------AAPSGTFRTSDGDLNIAANKQEQFELLCAALGRPELVADPRFAERESRKA 290 Query 298 NYAELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEV---- 353 + A+LTAELE+AL ++A W + L + G+ A + +V+ +P + L E+ Sbjct 291 HRAQLTAELEVALTKESAAHWEEALSSAGVPAAAVLSVPEVLASPQIVDRGLVHELPFPG 350 Query 354 GRGADTITVIRTPARYASFRAVVTDPPPTAGEHNAVFLA 392 G + + V+ R + + PPP GEH LA Sbjct 351 GVLPEPLRVLGNGIRVDDRPSTPSLPPPVLGEHTDSLLA 389 >gi|121534111|ref|ZP_01665936.1| Formyl-CoA transferase [Thermosinus carboxydivorans Nor1] gi|121307214|gb|EAX48131.1| Formyl-CoA transferase [Thermosinus carboxydivorans Nor1] Length=394 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 128/386 (34%), Positives = 195/386 (51%), Gaps = 15/386 (3%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPG-GEAARQITSVLPGRPPLATYF 66 KPL G VLD T+ +AGP A ++ D GA VIK+E PG G+ +R P + YF Sbjct 2 KPLQGVVVLDLTRVLAGPYAAMMMADFGANVIKIEPPGVGDDSRAFG---PFVGKESAYF 58 Query 67 LPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLI 126 + NR K+S+T++L +A++ + ADVVLE +RPGTMEK GLG ++L+ NP +I Sbjct 59 MSLNRNKRSMTLNLKHPEARELFKEMVKKADVVLENYRPGTMEKFGLGYEELKKINPKII 118 Query 127 YARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAV 186 YA + +G GP+ +P D++V A G+ + G+P + + D +G V Sbjct 119 YAACSGFGHTGPYMDKPAYDVIVQAMGGIMSITGQENGEPTRVGASIGDITAGLFTMIGV 178 Query 187 LAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGF 246 + AL HR G V V M D V + N + +L P P R + Sbjct 179 MMALYHRSITGEGQKVDVGMLDCQVAILENAIARYLTSGVV------PKPLGNRHPSI-- 230 Query 247 ATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAEL 306 P +AF DGY+++ A + W+KLC LIGRPDLV D+RF R+ N EL L Sbjct 231 --TPFEAFTAKDGYVIVGAGNDRLWEKLCNLIGRPDLVADERFVTNAKRTQNVKELKVIL 288 Query 307 ELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR-GADTITVIRT 365 + ++KT EW++ L+ G+ +T +V++ P ++ +E A + + Sbjct 289 DEVFSAKTVDEWLKELEEAGIPCGPINTIDRVINDPQVQARNMIVETDHPVAGKVKMAGV 348 Query 366 PARYASFRAVVTDPPPTAGEHNAVFL 391 P + ++ V P P G+H L Sbjct 349 PIKMSATPGAVERPAPLLGQHTEEIL 374 >gi|289524305|ref|ZP_06441159.1| CAIB/BAIF family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502477|gb|EFD23641.1| CAIB/BAIF family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length=396 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 129/382 (34%), Positives = 193/382 (51%), Gaps = 17/382 (4%) Query 9 PLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPG-GEAARQITSVLPGRPPLATYFL 67 PL+G VLDFT+ +AGP +L DLGAEVIK+E P G+ +R T ++ G + YF+ Sbjct 5 PLEGVIVLDFTRVLAGPFCAMILADLGAEVIKIERPKTGDDSRAFTPIVKGE---SAYFM 61 Query 68 PNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIY 127 NRGKKSVT+DL + ++ LR+ + AD+++E F+PG MEKLGL ++ +RNP +IY Sbjct 62 SINRGKKSVTLDLKNPKGREIALRMGEKADILIENFKPGVMEKLGLSYEEFAARNPRIIY 121 Query 128 ARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVL 187 A + +G GP +P DL+V G+ + + P + + D +G A +L Sbjct 122 ASCSGFGQYGPLSEKPAYDLIVQGLGGIMSITGPDKNTPTKVGSSIADIFAGVFTAIGIL 181 Query 188 AALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVG-F 246 AAL HRE +G V VAM D V + N + ++ + P P R + F Sbjct 182 AALHHRESSGKGQYVDVAMLDCMVAILENAIARYVATGVT------PEPIGNRHPSIAPF 235 Query 247 ATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAEL 306 AT F+T DG+I I+ + W++LC + RP L ED RF R N+A+L L Sbjct 236 AT-----FKTQDGHINIACGNNELWRRLCVALNRPHLYEDARFKTNADRVANWADLEPLL 290 Query 307 ELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRG-ADTITVIRT 365 + A +W++ G+ A VV P D+ + V A T+ Sbjct 291 QEAFIECPTEKWLKEFDDAGIPAGKISNIADVVKDPHVLARDMIVNVVHPVAGNFTLPGI 350 Query 366 PARYASFRAVVTDPPPTAGEHN 387 P + + + P P G+HN Sbjct 351 PIKLSMTPGKIKSPAPVLGQHN 372 >gi|325000436|ref|ZP_08121548.1| CaiB/BaiF family protein [Pseudonocardia sp. P1] Length=405 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 136/389 (35%), Positives = 195/389 (51%), Gaps = 29/389 (7%) Query 9 PLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLP 68 PLDG RV+DF Q +A P AGQ L DLGA+V+KVE+ G+ AR + G L Y Sbjct 5 PLDGMRVIDFGQYIAAPGAGQQLADLGADVVKVESLDGDQARSVGRF--GAAMLDAY--- 59 Query 69 NNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYA 128 NRGK+S+ VDL ++ + L +DV+L FR G+ E+LG+G +R R P+L+YA Sbjct 60 -NRGKRSIAVDLRRPESTPVIEALCARSDVLLHNFRCGSAERLGIGAAAIRDRFPHLVYA 118 Query 129 RLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVLA 188 +T +G GP R G+D+ AE G+ P+G+PQ +PF + D + + LA VLA Sbjct 119 FVTGFGSRGPSAGRAGLDIAAQAEYGLMHTNGEPDGEPQRVPFPIADVLAANALASGVLA 178 Query 189 ALLHRERNGVADVVQVAMYDVAVGLQANQLMMHL------NRAASDQPKPEPAPKAKRRK 242 AL+ R R G VV+ ++ + QA Q + R + QP PA Sbjct 179 ALVRRGRTGTGSVVETSLMEAVTAAQATQWSGYRLTGEPPRRTGNGQPAVAPA------- 231 Query 243 GVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAEL 302 ++ R DG IV+SAY W LC +G P+L D RFA+ +R + EL Sbjct 232 --------AEYVRAQDGAIVVSAYTTTKWTALCAALGAPELAADPRFADNDARVAHRREL 283 Query 303 TAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITV 362 +ELE L ++T E LL A+G++ ++ ++ D + L L+ G G Sbjct 284 CSELEHRLGTRTRREATALLSAHGIVCGTVRSFDELDDDADLLASGLLLQPGAGGS--GA 341 Query 363 IRTPARYASFRAVVTDPPPTAGEHNAVFL 391 + TP R P P GEH L Sbjct 342 LGTPYRIDDSPRGTAGPVPQVGEHTRTVL 370 >gi|121534539|ref|ZP_01666361.1| Formyl-CoA transferase [Thermosinus carboxydivorans Nor1] gi|121306791|gb|EAX47711.1| Formyl-CoA transferase [Thermosinus carboxydivorans Nor1] Length=392 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 122/380 (33%), Positives = 187/380 (50%), Gaps = 13/380 (3%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFL 67 K L G RVLD T+ +AGP +L D GA+VIK+E P E + P + YF+ Sbjct 2 KALQGIRVLDLTRVLAGPYCTMMLADYGADVIKIEPP--EVGDDSRAFGPFVGKESAYFM 59 Query 68 PNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIY 127 NR K+S+ ++ ++ + + ADVV+E +RPGTMEK GLG D L+ NP LIY Sbjct 60 SLNRNKRSIALNFKRQEERDLFKEMVKHADVVVENYRPGTMEKFGLGYDQLKEINPKLIY 119 Query 128 ARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVL 187 A + +G GP+ +P D++V A G+ + G P + + D +G A ++ Sbjct 120 AACSGFGHTGPYRDKPAYDIIVQAMGGIMSITGPENGDPTRVGASVGDIIAGMFTAYGIM 179 Query 188 AALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFA 247 AL HRER G + V M D V + N + ++ P P R + Sbjct 180 MALFHRERTGEGQKIDVGMLDCQVAILENAIARYVTSGVV------PGPLGNRHPSI--- 230 Query 248 TQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELE 307 P +F DGYI++ A + W++LC ++GRPDL++D+RF R+ N ELT L Sbjct 231 -TPFSSFTAKDGYIIVGAGNDRLWERLCNILGRPDLIKDERFDTNARRTANAKELTTILN 289 Query 308 LALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR-GADTITVIRTP 366 KT EW+ L+ GL +T ++V+ P ++ +EV A + + P Sbjct 290 EIFKEKTIAEWLTALEEAGLPCAPINTIDKIVNDPHIQAREMIVEVEHPVAGKLKMPGVP 349 Query 367 ARYASFRAVVTDPPPTAGEH 386 + ++ V P P G+H Sbjct 350 IKMSATPGSVEFPAPLLGQH 369 >gi|226309309|ref|YP_002769269.1| hypothetical protein RER_58220 [Rhodococcus erythropolis PR4] gi|226188426|dbj|BAH36530.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=378 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 129/341 (38%), Positives = 186/341 (55%), Gaps = 34/341 (9%) Query 9 PLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATY--- 65 PL G RV++ Q +A P AGQ L DLGAEVIK+E PGGE ARQI A Y Sbjct 8 PLAGVRVVEIGQLIAIPSAGQQLSDLGAEVIKLEPPGGEPARQID---------ADYARG 58 Query 66 -FLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPN 124 F NRGK+S+ +DL Q+ L ++D++L RPGT+++LG +L+ P Sbjct 59 IFYGYNRGKRSICLDLKDSADLQRARDLIASSDILLHNLRPGTLDRLGFSSAELQRLRPE 118 Query 125 LIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQ 184 +I ++ YG GP +R G+D+ AE+G+ + + PQ + ++D+A+ +V+AQ Sbjct 119 IIAVSVSGYGAEGPSATRAGLDIAAQAESGLMSVTGEADSPPQRVGAPVIDHATSYVVAQ 178 Query 185 AVLAALLHRERNGVADVVQVAMYDVAVGLQ-ANQLMMHLN-----RAASDQPKPEPAPKA 238 AVLAALL RER G V+V++ DVA+ LQ AN + ++ R + QP PA Sbjct 179 AVLAALLRRERTGKGSSVRVSLLDVAIHLQTANWIEWQVSGKPMIRKGNGQPSVAPA--- 235 Query 239 KRRKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSIN 298 +D FR DG +VIS Y P+ W +LC I P+L +D RF R N Sbjct 236 ------------ADVFRAVDGELVISGYQPRAWIELCKAIDLPELADDPRFTTNALRVEN 283 Query 299 YAELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVV 339 +L A +E L ++A E V+ L A G++A L + QV+ Sbjct 284 RVDLVATIEKQLCHRSAAEAVEHLTAAGVVAALVRDYDQVI 324 >gi|327310742|ref|YP_004337639.1| glucose dehydrogenase [Thermoproteus uzoniensis 768-20] gi|326947221|gb|AEA12327.1| glucose dehydrogenase (GDH) [Thermoproteus uzoniensis 768-20] Length=400 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/385 (35%), Positives = 198/385 (52%), Gaps = 14/385 (3%) Query 9 PLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLP 68 PL+G RV+D T +AGP A +L DLGAEVIKVE P G+ +R G + YF Sbjct 5 PLEGVRVVDLTSAMAGPFATMLLADLGAEVIKVEPPEGDQSRDWGPPFYGEK-YSAYFAS 63 Query 69 NNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYA 128 NRGKKSV V+L +E ++ + RL + ADV LE+FRPGT +LG+ LR NP LIY Sbjct 64 VNRGKKSVVVNLKSEDGRRVVYRLVERADVFLESFRPGTAARLGVDYQTLRKLNPRLIYC 123 Query 129 RLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVLA 188 ++ +G G + +PG DL+ A +G+ P+G P + D +G A AVLA Sbjct 124 SISGFGQYGRYRDQPGYDLIALAMSGLMDLTGEPDGPPVKFAVPIADIVTGMYCAVAVLA 183 Query 189 ALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFAT 248 AL RER G + +A+ D A+G+ +Q +L + RR G ++ Sbjct 184 ALRARERTGEGAYIDMALLDSALGISTHQSASYLASG-----------RVPRRLGSAHSS 232 Query 249 -QPSDAFRTADG-YIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAEL 306 P AF+ DG Y +++ K W+ C IGR DLV+D RF R++N L AEL Sbjct 233 IAPYQAFKAGDGRYFIVAVGTEKLWRDFCKAIGREDLVDDPRFETNDKRAVNREALAAEL 292 Query 307 ELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVIRTP 366 E + + A+ WV++L++ G+ A + + ++ E + LE + V+ +P Sbjct 293 EKVFSQRPASHWVEVLRSAGIPAAPIYNIAEALNDENTRERGMLLEYATALGAVRVVGSP 352 Query 367 ARYASFRAVVTDPPPTAGEHNAVFL 391 + + PPP G+H L Sbjct 353 IKIDGKPLAASAPPPLLGQHTVEVL 377 >gi|296158867|ref|ZP_06841695.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia sp. Ch1-1] gi|295890742|gb|EFG70532.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia sp. Ch1-1] Length=405 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 116/344 (34%), Positives = 183/344 (54%), Gaps = 12/344 (3%) Query 10 LDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLPN 69 L RVLDF+ +AGP+ L DLGA V+K+E PGGE RQI P + ++ F+ Sbjct 6 LKDVRVLDFSHVLAGPVCSMTLADLGAHVVKIEPPGGEIGRQIGP--PWQNGVSPAFMSV 63 Query 70 NRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYAR 129 NRGK S+ +DL T+ ++ + + ADV++E FRPG M +GLG D LR+ NP L+Y Sbjct 64 NRGKYSLAIDLKTDAGRRTITTMVRKADVLIENFRPGVMAAMGLGYDALRAVNPKLVYCS 123 Query 130 LTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVLAA 189 ++A+G G RPG+D V+ A +G+ + + T G P +P + D G++ AVL A Sbjct 124 ISAFGQRGESTGRPGVDGVIQAVSGLMSTLGTAHGDPLKVPVPVADMMGGYLATIAVLGA 183 Query 190 LLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFATQ 249 L + + V++Y+ + LQ A + AP A Sbjct 184 LHTVRTKAMGQHLDVSLYNSTLMLQQIAFAAFFASGADPEKVGSAAPYA----------C 233 Query 250 PSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELELA 309 P++AFRT DG++++ AY P W LC L+ P L D RFA +R ++ A+L L+ Sbjct 234 PNEAFRTRDGWMMVVAYHPGRWSALCELLDAPGLETDARFATNDARVLHRAQLHGILDAH 293 Query 310 LASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEV 353 A ++ EW+ +L A ++ T+++V++T + E+ + V Sbjct 294 FARRSTAEWIDMLSARDILCAPVTTYREVIETTEYRESGIARTV 337 >gi|226362037|ref|YP_002779815.1| CaiB/BaiF family protein [Rhodococcus opacus B4] gi|226240522|dbj|BAH50870.1| CaiB/BaiF family protein [Rhodococcus opacus B4] Length=412 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 138/387 (36%), Positives = 204/387 (53%), Gaps = 19/387 (4%) Query 7 AKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYF 66 PL+G +V+DF Q +A P A VL +LGAEV+KVE G+ AR+I + G + Y Sbjct 13 GHPLEGIKVIDFGQYIAAPAATAVLAELGAEVVKVEPLHGDQARRIGAF--GDAMIRAY- 69 Query 67 LPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLI 126 NRGK+S+ +DL E+ ++ L+L ADVV++ RPG ME+LGLGP+ +R NP I Sbjct 70 ---NRGKRSLAIDLRDERGRKLALQLVADADVVVQNMRPGAMERLGLGPEAVREVNPRAI 126 Query 127 YARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAV 186 YA +T +G +GP +R G+D+ AE+G+ + +G P + +VD ++ LAQA+ Sbjct 127 YASVTGFGMHGPSRNRAGLDIAAQAESGIMSVTGEADGDPLRVGLPVVDASTASSLAQAI 186 Query 187 LAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGF 246 LAAL RER G + +++ +VA+ LQA + + RR+G G Sbjct 187 LAALFRRERTGEGAEIDISLLEVAIHLQAANWEEYFGTG-----------REPRRRGNGQ 235 Query 247 ATQ--PSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTA 304 T +D RT DG+IV+SAY +HW LC LI R DL+ D RF SR N + L Sbjct 236 PTVAPAADVIRTVDGHIVLSAYTDEHWGILCRLIDRTDLLTDPRFDTNPSRVRNRSALLQ 295 Query 305 ELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVIR 364 L AL++ + V L NG++ ++QV+++ + + R + Sbjct 296 ILSGALSAMSTENCVNWLSDNGIVVGAVRGYEQVLESGDVHASGIFRTDVRADGGGKYVG 355 Query 365 TPARYASFRAVVTDPPPTAGEHNAVFL 391 P R V DP P GEH+ L Sbjct 356 LPYRIEGLPPSVPDPAPELGEHSGSVL 382 >gi|115361158|ref|YP_778295.1| Formyl-CoA transferase [Burkholderia ambifaria AMMD] gi|115286486|gb|ABI91961.1| Formyl-CoA transferase [Burkholderia ambifaria AMMD] Length=418 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 130/395 (33%), Positives = 191/395 (49%), Gaps = 22/395 (5%) Query 3 TSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAP-GGEAARQITSVLPGRPP 61 + A+PL+G R++D T+ V+GP A L DLGA+VIK+E P G+ +R PP Sbjct 10 SGTSARPLEGIRIVDLTRVVSGPFATMHLADLGADVIKIEEPTSGDDSRAFG------PP 63 Query 62 L----ATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDD 117 + YFL NR K+S +DL ++ +Q +LR+ +TADVV++ FRPG M++LGL + Sbjct 64 FVAGESAYFLSVNRNKRSCAIDLKSDAGRQILLRMIETADVVVDNFRPGAMKRLGLDHET 123 Query 118 LRSRNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNA 177 LRS NP LI ++ +G GP RPG DL+V EAG+ P G+P + + D Sbjct 124 LRSINPRLICCSISGFGSQGPDAQRPGYDLIVQGEAGVMDITGDPSGQPTKVGTSIADMI 183 Query 178 SGHVLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPK 237 +G Q +L+AL R R GVA VQ++M D L ++ + AS + P Sbjct 184 AGLFAVQGILSALYERNRTGVARSVQISMLDALASLLTFNAGIYFSTGASPTRRGNEHP- 242 Query 238 AKRRKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSI 297 P + F+ +DG+I + K W+ C + DLV+D RFA R Sbjct 243 ---------TICPYETFQASDGWINLGVANDKFWKLFCEVANASDLVDDPRFATAPLRVS 293 Query 298 NYAELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRG- 356 N EL + L + +WV+ L G+ L T +V + E + L + Sbjct 294 NRHELRPLVAALLRGNSRADWVEKLGNAGVPCGLIRTVGEVCEAAQLTERGMILSMDHPI 353 Query 357 ADTITVIRTPARYASFRAVVTDPPPTAGEHNAVFL 391 A + I P R PPP G+H L Sbjct 354 AGVVKNITNPVRLDDAPMTHASPPPMLGQHTREIL 388 >gi|338813859|ref|ZP_08625936.1| Formyl-CoA transferase [Acetonema longum DSM 6540] gi|337274151|gb|EGO62711.1| Formyl-CoA transferase [Acetonema longum DSM 6540] Length=394 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 126/388 (33%), Positives = 193/388 (50%), Gaps = 15/388 (3%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPG-GEAARQITSVLPGRPPLATYF 66 KPL G VLD ++ +AGP A +L D GA +IK+E P G+ +R + G+ + Y+ Sbjct 2 KPLAGLVVLDLSRVLAGPYASMMLADFGANIIKIEPPKVGDDSRAFGPFI-GKE--SAYY 58 Query 67 LPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLI 126 + NR K+S+T++L + AK + ADVVLE +RPGTMEK GLG +DL+ NP +I Sbjct 59 MSLNRNKRSMTLNLKEQAAKDLFKEMVKKADVVLENYRPGTMEKFGLGYEDLQKINPKII 118 Query 127 YARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAV 186 YA + +G GP+ +P D++V A G+ + G P + + D +G V Sbjct 119 YAACSGFGHTGPYMDKPAYDIIVQAMGGIMSITGPENGDPTRVGASVGDITAGLFATVGV 178 Query 187 LAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGF 246 L A+ HRER G V V M D V + N + +L P P R + Sbjct 179 LLAVYHRERTGEGQKVDVGMLDCQVAILENAISRYLVNGVI------PKPLGNRHPSI-- 230 Query 247 ATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAEL 306 P ++F DGY+++ A + W+KLC L+ RPDL+ D RFA R+ N EL L Sbjct 231 --TPFESFTAKDGYVIVGAGNDRLWEKLCSLLERPDLIHDARFATNALRTQNVKELKVIL 288 Query 307 ELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR-GADTITVIRT 365 + +KT W+ L+ G+ +T +V++ P D+ +++ A + V Sbjct 289 DSVFKNKTIDAWLGFLEEAGIPCAPINTVDKVINDPQIKARDMIVDLKHPVAGEMKVPGV 348 Query 366 PARYASFRAVVTDPPPTAGEHNAVFLAR 393 P + + V P P G+H L+ Sbjct 349 PIKLSKTPGAVETPAPLLGQHTEEILSE 376 >gi|339323894|ref|YP_004682787.1| L-carnitine dehydratase/bile acid-inducible protein F [Cupriavidus necator N-1] gi|338171887|gb|AEI82939.1| L-carnitine dehydratase/bile acid-inducible protein F [Cupriavidus necator N-1] Length=389 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 132/383 (35%), Positives = 199/383 (52%), Gaps = 14/383 (3%) Query 10 LDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLPN 69 L G RV+DFTQ AGP+ Q L DLGA+V+KVEAP GE R + + G+ + FL Sbjct 6 LRGIRVVDFTQVAAGPVCTQTLADLGADVVKVEAPQGELCRALAPFVEGQ---SLGFLAL 62 Query 70 NRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYAR 129 N K+SV +DL Q + L+LA ADVV+E+FRPG M++LGLG +D+R NP +IY Sbjct 63 NGNKRSVALDLKDPQQRAAALQLAAGADVVVESFRPGVMQRLGLGYEDVRQLNPGVIYCS 122 Query 130 LTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVLAA 189 ++AYG G +PG+D V+ A +G+ + P+ P + +VD +G++ A AVL A Sbjct 123 ISAYGQEGAWKHKPGVDGVLQAVSGLMSVTGLPDAPPCKVQVPVVDMVTGYIGAIAVLGA 182 Query 190 LLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFATQ 249 L R R+G + V M+ AV LQ + + AP A Sbjct 183 LARRTRDGGGQWIDVGMFACAVALQQMSFASYFADDVAPTRIGSAAPYAA---------- 232 Query 250 PSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELELA 309 P++A R ADG+++++AY P W LC ++ +L+ D RF E R + EL LE Sbjct 233 PNEALRCADGWVMLAAYHPSRWVALCEVLNCRELLSDPRFCELSDRIAHRRELVQLLEAR 292 Query 310 LASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRG-ADTITVIRTPAR 368 + + +EW++ +A ++ + + + V +P F + L V A + + R+P R Sbjct 293 MTLRPRSEWLERFEAADIICAPINDYSEAVASPAFKDAQLAETVRHSVAGELILPRSPLR 352 Query 369 YASFRAVVTDPPPTAGEHNAVFL 391 P P GEH + L Sbjct 353 AVGESPRARRPAPLVGEHTSEVL 375 >gi|298249620|ref|ZP_06973424.1| L-carnitine dehydratase/bile acid-inducible protein F [Ktedonobacter racemifer DSM 44963] gi|297547624|gb|EFH81491.1| L-carnitine dehydratase/bile acid-inducible protein F [Ktedonobacter racemifer DSM 44963] Length=387 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 133/383 (35%), Positives = 191/383 (50%), Gaps = 22/383 (5%) Query 10 LDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPG-GEAARQITSVLPGRPPL----AT 64 L G RV+DFT+ VAGP +L DLGAE+IK+E PG G+ R PP + Sbjct 4 LSGIRVVDFTRVVAGPYCTMLLGDLGAEIIKIEQPGKGDDTRSWG------PPFVGGESA 57 Query 65 YFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPN 124 YFL NR KKSV +DL E + + RL +DV++E FR G ME+ GLG +D R R+P Sbjct 58 YFLSVNRNKKSVCLDLNNEDDLKVVHRLVAESDVMIENFRSGIMERFGLGYEDWRERHPR 117 Query 125 LIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQ 184 LIY ++ YG +GP+ R G D++V+A G+ TPEG+P L D +G Sbjct 118 LIYCSISGYGRSGPYKDRAGYDVIVSAMGGLMGITGTPEGEPVKTGVALTDVITGLYAFS 177 Query 185 AVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGV 244 A+ AL HRER+G + V++ + N +L + + P+P+ + Sbjct 178 AIQTALYHRERSGQGQRLDVSLLSAELAALINAASNYL--VSGEVPQPQGSAHG------ 229 Query 245 GFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTA 304 + P AFR ADGYIVI A K +QKLC + P+ D+RF R N L + Sbjct 230 --SIVPYQAFRAADGYIVIGAANDKLFQKLCQALAHPEWASDERFRTNAERVKNREALIS 287 Query 305 ELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR-GADTITVI 363 +E AL +++ W LL G+ + QV P + + + A + ++ Sbjct 288 LIEDALQAESVATWEPLLAQAGIAVGPVNRMDQVFQDPQVMHSQQVVSLAHPTAGDVRLV 347 Query 364 RTPARYASFRAVVTDPPPTAGEH 386 Y+ A +T PPP GEH Sbjct 348 GPAVNYSLTPAEITSPPPLLGEH 370 >gi|269928907|ref|YP_003321228.1| Formyl-CoA transferase [Sphaerobacter thermophilus DSM 20745] gi|269788264|gb|ACZ40406.1| Formyl-CoA transferase [Sphaerobacter thermophilus DSM 20745] Length=395 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/390 (34%), Positives = 195/390 (50%), Gaps = 22/390 (5%) Query 9 PLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPG-GEAARQITSVLPGRPPL----A 63 P G RVLD ++ ++GP VL D GAEVIKVE PG G+ R PP + Sbjct 4 PFAGVRVLDLSRILSGPYCTMVLADFGAEVIKVERPGAGDDTRHWG------PPFVGGES 57 Query 64 TYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNP 123 YFL NR KKS+TVD++T + ++ + RLA TADV +E FRPGT ++LG+G + LR NP Sbjct 58 GYFLSINRNKKSITVDMSTPEGREIIYRLARTADVAIENFRPGTADRLGIGYERLRQENP 117 Query 124 NLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLA 183 ++IY ++ +G GP+ RPG D + A +GM P+G P + D +G Sbjct 118 SIIYCSISGFGQTGPYRDRPGYDALAQAMSGMMAITGEPDGPPMKHGMSIADIGAGMWAV 177 Query 184 QAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKG 243 A+ AAL HRER G + V++ D + L AA + P R Sbjct 178 FAIAAALYHRERTGEGQAIDVSLLDAQLSW--------LTYAAGNYFASGKNP--GRYGS 227 Query 244 VGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELT 303 P F TADGYI+++ + WQ+ C GRP+L + F R N A++ Sbjct 228 AHPNIVPYQPFATADGYIMLAVGNDRLWQQFCQAAGRPELADQPGFRTNAERVTNRADVV 287 Query 304 AELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR-GADTITV 362 A + +A +T EW++LL+ G+ A +T +Q++ P ++ + + A + Sbjct 288 ATVGAIMAQRTTAEWMELLERAGVPAGPINTVEQILHDPHVLAREMVVTLQHPTAGEVKT 347 Query 363 IRTPARYASFRAVVTDPPPTAGEHNAVFLA 392 + PA+ + V PP G+H LA Sbjct 348 VGIPAKLSDTPGTVRSAPPLLGQHTDEVLA 377 >gi|121608237|ref|YP_996044.1| L-carnitine dehydratase/bile acid-inducible protein F [Verminephrobacter eiseniae EF01-2] gi|121552877|gb|ABM57026.1| L-carnitine dehydratase/bile acid-inducible protein F [Verminephrobacter eiseniae EF01-2] Length=389 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 136/394 (35%), Positives = 198/394 (51%), Gaps = 16/394 (4%) Query 2 PTSNPAK-PLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPG-GEAARQITSVLPGR 59 P S+ +K PLDG+ ++D T+ +AGP +L DLGA VIKVE PG G+ AR I + G Sbjct 4 PVSHSSKGPLDGYTIIDLTRVLAGPYCTLLLADLGARVIKVEQPGVGDDARHIGPFVEGD 63 Query 60 PPLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLR 119 + YF+ NR K+S+ +DL + +Q L TADV++E FRPGTMEKLG + L Sbjct 64 ---SAYFMSVNRNKESIALDLKSADDRQIFESLLQTADVLVENFRPGTMEKLGYVWEALH 120 Query 120 SRNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASG 179 R P L+Y ++ +G GP+ RP D+VV A G+ + P P + + D A+G Sbjct 121 ERLPRLVYTSVSGFGQTGPYSKRPAYDMVVQAMGGIMSLTGQPGALPTRVGVSIGDLAAG 180 Query 180 HVLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAK 239 A AALL RER G D V VAM D V L N ++R D P P Sbjct 181 LYAAVGTQAALLQRERTGFGDRVDVAMLDCQVALLENA----ISRMQVD--GRVPGPLGS 234 Query 240 RRKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINY 299 R + P D FR DG++VI+A ++KLC ++G L+ED RF R +++ Sbjct 235 RHPSI----TPFDVFRARDGWLVIAAGNDAVFRKLCAVLGLHGLIEDPRFLTNHLRCLHH 290 Query 300 AELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEV-GRGAD 358 L A +E L S +W ++L +N + + V + P + ++V R Sbjct 291 EALKALIERQLNSAPCADWQEVLMSNDIPTGPYNDLAAVCNDPQIQSRQMLIQVQARNGQ 350 Query 359 TITVIRTPARYASFRAVVTDPPPTAGEHNAVFLA 392 ++TV +P + R + PP + LA Sbjct 351 SLTVAGSPVHVGAHRTPLVRQPPQLDQDRQAILA 384 >gi|317126136|ref|YP_004100248.1| L-carnitine dehydratase/bile acid-inducible protein F [Intrasporangium calvum DSM 43043] gi|315590224|gb|ADU49521.1| L-carnitine dehydratase/bile acid-inducible protein F [Intrasporangium calvum DSM 43043] Length=391 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 136/385 (36%), Positives = 198/385 (52%), Gaps = 13/385 (3%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFL 67 +PL G V+D +Q +AGPL +L DLGA+VIKVE P G+ +R G A FL Sbjct 10 RPLTGVVVVDLSQVLAGPLCTMILADLGADVIKVEPPQGDQSRTSLGTRIGDDSAA--FL 67 Query 68 PNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIY 127 NR K+SV +DL+T + + L AD+V+E FRPG E+LG G + L + NP L+Y Sbjct 68 AVNRNKRSVELDLSTATGRAALHGLVAEADIVVENFRPGVAERLGAGYEQLSAINPGLVY 127 Query 128 ARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVL 187 +T +G GP+ +R G+DLVV A G+ + G+P + D ASG L VL Sbjct 128 GSVTGFGAQGPYANRAGLDLVVQAMTGLMSVTGEQGGRPVKNGPPVADLASGLYLTIGVL 187 Query 188 AALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFA 247 AAL R+ GV V ++Y+ A+ L + + +P P A R Sbjct 188 AALHERDATGVGQKVATSLYESALSLA----VWETAELWATGEQPGPLGSAHRMAA---- 239 Query 248 TQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELE 307 P A RT+DGY+V++A + W++LC ++GRP+L +D RFA R + +L+A LE Sbjct 240 --PYQALRTSDGYVVVAATNARFWRRLCDIVGRPELADDPRFATNADRLAHRGDLSALLE 297 Query 308 LALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR-GADTITVIRTP 366 L + TEWV L A G+ A + Q + P + +E A T+ ++ +P Sbjct 298 AELERRPTTEWVDELVAAGVPAGPLQDYAQALRDPHTLATGMVVEAPHPDAGTLRMLGSP 357 Query 367 ARYASFRAVVTDPPPTAGEHNAVFL 391 +S + PP GEH A L Sbjct 358 LHLSSADFRLDRLPPRLGEHTAQVL 382 >gi|255946535|ref|XP_002564035.1| Pc20g15630 [Penicillium chrysogenum Wisconsin 54-1255] gi|211588770|emb|CAP86892.1| Pc20g15630 [Penicillium chrysogenum Wisconsin 54-1255] Length=452 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 134/396 (34%), Positives = 200/396 (51%), Gaps = 22/396 (5%) Query 9 PLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGG--------EAARQITSVLPGRP 60 PL G R+LD T+ +AGP Q+L + GAEV+KVE P G AA + G+ Sbjct 51 PLLGIRILDLTRVLAGPFCTQILANYGAEVLKVEHPKGGDDTRLWRTAAEKHVWKSTGKD 110 Query 61 PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS 120 ++TYF NR K S+T++L E+ ++ + RL ADVV+E F PG M+++G+G + LR Sbjct 111 -MSTYFCAINRNKLSMTLNLKQEKGREILFRLVKEADVVVENFVPGKMDEMGIGYEKLRE 169 Query 121 RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH 180 NP++IYA ++ YG +GP+ R G D + AAEAGM G P L D ++G Sbjct 170 INPSIIYASVSGYGASGPYSHRAGYDAIAAAEAGMLYITGERNGPPTRPGLGLTDMSTGL 229 Query 181 VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR 240 L A+LAAL R G + ++++ V L +N M LN AKR Sbjct 230 YLHGAILAALYARRDTGRGQKIDTSLFESQVSLLSNVAMSWLN----------GGEHAKR 279 Query 241 RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA 300 + P AF+T DG++V+ A + +Q LC L+ +L D RF + SR N A Sbjct 280 WGTEHPSIVPYQAFKTKDGHLVLGATNNRQFQTLCRLVKLSELATDPRFVDNSSRVQNRA 339 Query 301 ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGA--- 357 EL LE + K W+ L +GL +T ++V P A D+ + A Sbjct 340 ELKEILEPIIRRKPTKVWLSDLDGSGLPYGPVNTIEEVFSHPQTAARDMVHSLPHEASES 399 Query 358 DTITVIRTPARYASFRAVVTDPPPTAGEHNAVFLAR 393 + I ++ TP +++ + + PP+ GEH L R Sbjct 400 EEIRLLGTPVKFSGTKPQIRRSPPSLGEHTNFTLER 435 >gi|118471022|ref|YP_890981.1| CaiB/BaiF family protein [Mycobacterium smegmatis str. MC2 155] gi|118172309|gb|ABK73205.1| CaiB/BaiF family protein [Mycobacterium smegmatis str. MC2 155] Length=395 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/345 (38%), Positives = 182/345 (53%), Gaps = 12/345 (3%) Query 10 LDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLPN 69 + G RVLDFT VAGPL L DLGA+V+K+E P GE R+I P R + + Sbjct 1 MRGLRVLDFTHVVAGPLCTMTLADLGADVVKIEPPAGEIGRRIGP--PWRDGQSVIWQSV 58 Query 70 NRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYAR 129 NR K+S+T+DL T ++ R+A ADVV+E+FRPG M L LG D L S NP L+Y Sbjct 59 NRNKRSLTLDLKTPAGRRAARRMARQADVVVESFRPGVMTDLDLGYDTLASANPALVYCS 118 Query 130 LTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVLAA 189 ++A+G GP RPG+D ++ A G+ + + PE P + D +G++ + AVLAA Sbjct 119 ISAFGQAGPASDRPGVDGIMQAVTGLMSTLGEPESGPAKVQVPAADMVTGYLASIAVLAA 178 Query 190 LLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFATQ 249 L G + V++Y+ + LQ +L A Q AP A Sbjct 179 LHEVRDGGRGQHLDVSLYNATILLQQIGFTSYLASGAEPQRLGSAAPYAA---------- 228 Query 250 PSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELELA 309 P++A TADG+I+I+AY P W LC +G PDL D RFA R N L EL Sbjct 229 PNEALPTADGWIMIAAYDPARWNALCDALGAPDLSSDARFATNDDRVRNRPALRTELGRL 288 Query 310 LASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVG 354 L ++T W+ +L A ++ + + QVV +P +A + L +G Sbjct 289 LRARTTQVWLDVLSARDILCAPVNGYGQVVASPEYAASGLHRPIG 333 >gi|33603650|ref|NP_891210.1| CaiB/BaiF family protein [Bordetella bronchiseptica RB50] gi|33577775|emb|CAE35040.1| CaiB/BaiF family protein [Bordetella bronchiseptica RB50] Length=402 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/387 (34%), Positives = 184/387 (48%), Gaps = 14/387 (3%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAP-GGEAARQITSVLPGRPPLATYF 66 PL G RVLD T+ V+GP +L DLGAEVIK+E P G+ +R G + YF Sbjct 2 SPLHGIRVLDLTRVVSGPFCTMLLGDLGAEVIKIEEPVHGDDSRAFGPPFSGGE--SAYF 59 Query 67 LPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLI 126 L NR K+S +DL + K+ + LA +DVV++ FRPGTM +LGLG D LR+ NP L+ Sbjct 60 LSVNRNKRSCAIDLKQPEGKELLRALARASDVVIDNFRPGTMARLGLGYDALRAANPRLV 119 Query 127 YARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAV 186 +T +G +GP RPG DL++ E+G+ P G P I + D +G +QA+ Sbjct 120 SCSITGFGDSGPDAQRPGYDLIIQGESGIMDITGDPAGLPTKIGTSIADLITGQFASQAI 179 Query 187 LAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGF 246 AALL R +G V +AM D L ++ AS RR Sbjct 180 TAALLERASSGQGRHVGIAMLDCMASLLTFNAGIYFTTGAS----------PTRRGNAHP 229 Query 247 ATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAEL 306 P + F+ ADG++ I K WQ C +I RPDL +D R+A R AEL + Sbjct 230 TIAPYETFQAADGWLNIGVANDKFWQLFCGVIARPDLADDPRYARAADRVALRAELVPRI 289 Query 307 ELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR-GADTITVIRT 365 +A+K W+ L+ G+ + +V + + ++ A + I + Sbjct 290 AALIAAKPRAYWIAALREAGVPCGDIRSVAEVCEAEQLVSRGMVFDMPHPSAGQVRNIAS 349 Query 366 PARYASFRAVVTDPPPTAGEHNAVFLA 392 P R+ PP GEH A L Sbjct 350 PFRFDGAGTAAHRAPPLLGEHTAAILC 376 >gi|226308522|ref|YP_002768482.1| hypothetical protein RER_50350 [Rhodococcus erythropolis PR4] gi|226187639|dbj|BAH35743.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=402 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/337 (39%), Positives = 189/337 (57%), Gaps = 27/337 (8%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFL 67 PL G RV+DF Q VA P A Q L++LGA+V+KVE P G+ R T+ G L +Y Sbjct 4 SPLHGIRVVDFGQFVAAPGASQTLIELGADVVKVEPPEGDWVRAGTAF--GDAILRSY-- 59 Query 68 PNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIY 127 NRGK+S+ +DL + + +L ADV+++ RPG M LGLG D + NP IY Sbjct 60 --NRGKRSIAIDLKDPRGLEVAEKLVADADVIIQNMRPGAMAALGLGQDRVHELNPRAIY 117 Query 128 ARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVL 187 A ++ +G NGP +RPG+D+ AE+G+ + G P + ++D A+ HVLAQA+L Sbjct 118 ATVSGFGLNGPSRNRPGLDIAAQAESGLMSITGELGGNPLRVGTTIIDTATAHVLAQAIL 177 Query 188 AALLHRERNGVADVVQVAMYDVAVGLQANQLMMH------LNRAASDQPKPEPAPKAKRR 241 AALL RER ++V++ +VA+ LQ+ + + H L R + QP PA Sbjct 178 AALLERERFDRVAPIEVSLLEVAIHLQSAEWISHALTGIPLVRRGNGQPGVAPA------ 231 Query 242 KGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAE 301 +D +T+DG+IVIS Y P HW+ LC ++G P++ D RF + +R + E Sbjct 232 ---------ADLIQTSDGHIVISGYSPHHWKLLCEVLGHPEMAADPRFVDNEARVAHRGE 282 Query 302 LTAELELALASKTATEWVQLLQANGLMACLAHTWKQV 338 L A + AL +T+ E VQLL NG++ + QV Sbjct 283 LLAAMSDALGDRTSEECVQLLAGNGIVVGAVRDYDQV 319 >gi|336455132|ref|NP_001229612.1| hypothetical protein LOC585781 [Strongylocentrotus purpuratus] Length=434 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 134/396 (34%), Positives = 193/396 (49%), Gaps = 26/396 (6%) Query 4 SNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPG-GEAARQITSVLPGRPPL 62 S+ + PL G RV+D T+ +AGP +L DLGAEVIK+E PG G+ R PP Sbjct 34 SSVSSPLAGIRVVDLTRVLAGPFCSMLLGDLGAEVIKIERPGVGDETRHWG------PPF 87 Query 63 ----ATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDL 118 + YFL NR KKS+ V+L + + + +L ++DV+LE + PG +E+LGLG D L Sbjct 88 INGESCYFLSVNRNKKSLAVNLKHPKGIEVVKKLVASSDVLLENYIPGKLEELGLGYDSL 147 Query 119 RSRNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNAS 178 R NP LIY +T YG GP+ R G DL+ A G+ EG P + + D ++ Sbjct 148 RETNPGLIYCSITGYGQTGPYSERGGYDLIAAGLGGLMNITGPQEGDPCKVGVAMTDLST 207 Query 179 GHVLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKA 238 G A+LAALLHR + G + + V L + +L +A Sbjct 208 GLYAKGAILAALLHRMQTGEGQRIDTNLLSTQVSLLTHLATNYL----------MDGREA 257 Query 239 KRRKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSIN 298 KRR + P AF+TADGY++I A + +Q LC I +L ED ++ R +N Sbjct 258 KRRGTQHESIVPYQAFKTADGYLIIGAGNDRAFQTLCKRICLSELAEDPQYKTNAQRVLN 317 Query 299 YAELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGAD 358 L L L+ K ++W+++L+ G +T QV D P NDL E+ Sbjct 318 RDVLLPVLSKRLSEKKTSDWMEVLEGCGFPYGPINTMGQVFDDPQVKHNDLVQEIDH--P 375 Query 359 TITVIRTPARYASFRAVVTD---PPPTAGEHNAVFL 391 T +R P + + T P P G+H A L Sbjct 376 TAGTMRVPGHAVQYSTISTKENFPSPLLGQHTADIL 411 >gi|150376806|ref|YP_001313402.1| L-carnitine dehydratase/bile acid-inducible protein F [Sinorhizobium medicae WSM419] gi|150031353|gb|ABR63469.1| L-carnitine dehydratase/bile acid-inducible protein F [Sinorhizobium medicae WSM419] Length=393 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 137/392 (35%), Positives = 188/392 (48%), Gaps = 19/392 (4%) Query 9 PLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQ----ITSVLPGRPPLAT 64 PL G RVL+ + +AGP GQ L DLGA+VIKVE+P G+ R G A Sbjct 4 PLKGIRVLELARILAGPWIGQTLADLGADVIKVESPAGDDTRSWGPPFVQGEGGERLDAA 63 Query 65 YFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPN 124 YF NRGK+SV +D TTE+ ++ + RLA +DV+LE F+ G + K GL + LR NP Sbjct 64 YFHACNRGKRSVVLDFTTEEGQEAVRRLASQSDVLLENFKVGGLAKYGLDYESLRKVNPR 123 Query 125 LIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQ 184 LIY +T +G GP+ R G D +V +G+ P+G+PQ I D +G Sbjct 124 LIYCSVTGFGQEGPYAHRAGYDYIVQGMSGIMDLTGEPDGEPQKIGVAFADIFTGLYGVI 183 Query 185 AVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGV 244 AV AAL RERNG + +A+ D G+ ANQ + L KA RR G Sbjct 184 AVQAALAQRERNGAGQHIDMALLDCMTGVLANQALNFLVSG-----------KAPRRLGN 232 Query 245 GFAT-QPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELT 303 P F T+DG+++++ + + K C L+GRPDL D R+ R N LT Sbjct 233 AHPNIAPYQVFPTSDGHLIVAVGNDRQFVKFCELLGRPDLASDPRYRTNADRVQNRDSLT 292 Query 304 AELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLE---VGRGADTI 360 EL A + L+A+G+ +T V P + +E G T Sbjct 293 PELAAETAKFERDTLLARLEASGVPGGPINTVADVFADPQIIHRQMRVETPHTGAATGTS 352 Query 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLA 392 IRTP R++ + P GEH LA Sbjct 353 PGIRTPIRFSDAALALERGVPRLGEHTEEVLA 384 >gi|33598696|ref|NP_886339.1| CaiB/BaiF family protein [Bordetella parapertussis 12822] gi|33574826|emb|CAE39487.1| CaiB/BaiF family protein [Bordetella parapertussis] Length=402 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/387 (34%), Positives = 184/387 (48%), Gaps = 14/387 (3%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAP-GGEAARQITSVLPGRPPLATYF 66 PL G RVL+ T+ V+GP +L DLGAEVIK+E P G+ +R G + YF Sbjct 2 SPLHGIRVLELTRVVSGPFCTMLLGDLGAEVIKIEEPVHGDDSRAFGPPFSGGE--SAYF 59 Query 67 LPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLI 126 L NR K+S +DL + K+ + LA +DVV++ FRPGTM +LGLG D LR+ NP L+ Sbjct 60 LSVNRNKRSCAIDLKQPEGKELLRALARASDVVIDNFRPGTMARLGLGYDALRAANPRLV 119 Query 127 YARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAV 186 +T +G +GP RPG DL++ E+G+ P G P I + D +G +QA+ Sbjct 120 SCSITGFGDSGPDAQRPGYDLIIQGESGIMDITGDPAGLPTKIGTSIADLITGQFASQAI 179 Query 187 LAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGF 246 AALL R +G V +AM D L ++ AS RR Sbjct 180 TAALLERASSGQGRHVGIAMLDCMASLLTFNAGIYFTTGAS----------PTRRGNAHP 229 Query 247 ATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAEL 306 P + F+ ADG++ I K WQ C +I RPDL +D R+A R AEL + Sbjct 230 TIAPYETFQAADGWLNIGVANDKFWQLFCGVIARPDLADDPRYARAADRVALRAELVPRI 289 Query 307 ELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR-GADTITVIRT 365 +A+K W+ L+ G+ + +V + + ++ A + I + Sbjct 290 AALIAAKPRAYWIAALREAGVPCGDIRSVAEVCEAEQLVSRGMVFDMPHPSAGQVRNIAS 349 Query 366 PARYASFRAVVTDPPPTAGEHNAVFLA 392 P R+ PP GEH A L Sbjct 350 PFRFDGAGTAAHRAPPLLGEHTAAILC 376 >gi|194291551|ref|YP_002007458.1| formyl-CoA transferase, nad(p)-binding; caib/baif CoA-transferase family. [Cupriavidus taiwanensis LMG 19424] gi|193225455|emb|CAQ71401.1| putative formyl-CoA transferase, NAD(P)-binding; caiB/baiF CoA-transferase family [Cupriavidus taiwanensis LMG 19424] Length=402 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/392 (34%), Positives = 196/392 (50%), Gaps = 14/392 (3%) Query 2 PTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPP 61 P+S+ PL G RV+DF++ +AGP +L DLGAEVIK+E PGG+ R + + GR Sbjct 13 PSSHSNLPLAGIRVIDFSRVLAGPYCTALLGDLGAEVIKIEPPGGDDYRAVGPFVDGRSG 72 Query 62 LATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSR 121 L F NR K+S+ +DL T + L ADVV+E FRPG +KLG+G + LR+ Sbjct 73 L---FSAMNRNKQSIVIDLKTVAGLELARTLCTRADVVVENFRPGVADKLGIGYEALRAL 129 Query 122 NPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHV 181 NP+L+YA ++ +G GP RP D+++ A G+ P+G P ++ + D SG Sbjct 130 NPSLVYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGAPDGAPTMLGEAVSDAVSGLF 189 Query 182 LAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRR 241 + VLAALL RE+NG V V+M+D + L A + + + Q P Sbjct 190 ASWGVLAALLAREKNGRGTHVDVSMFDATLSLSATLVARYAATGRAPQRVGNRHP----- 244 Query 242 KGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAE 301 ++ P +R ADG+ V++ K + L IG P++ D RFA+ SR Sbjct 245 -----SSAPFGVYRAADGFYVVAVLNNKLFHTLAETIGCPEMAHDPRFADDESRCRFEPA 299 Query 302 LTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEV-GRGADTI 360 L A LE + +T E +LL A G+ +Q +++ L EV G T+ Sbjct 300 LRAGLEAWSSGRTVAEVNRLLGAAGIPVAPIRNVRQALESAHAVHRGLLTEVAGPDGSTM 359 Query 361 TVIRTPARYASFRAVVTDPPPTAGEHNAVFLA 392 + P +++ + P P G+H LA Sbjct 360 RLPSQPVKFSGYGPNRVTPAPELGQHTEAILA 391 >gi|324997693|ref|ZP_08118805.1| acyl-CoA dehydrogenase [Pseudonocardia sp. P1] Length=982 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/384 (35%), Positives = 196/384 (52%), Gaps = 16/384 (4%) Query 7 AKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAP-GGEAARQITSVLPGRPPLATY 65 A+PLDG RV+D ++ +AGP G L DLGA+V+KVE P GG+ RQ G ATY Sbjct 597 ARPLDGIRVVDLSKILAGPYVGMTLADLGADVVKVEHPDGGDPTRQWGPPFQGSD--ATY 654 Query 66 FLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNL 125 +L NR K+SVTVDL +++ + + + ADVV+E FRPG+ + +L R+P+L Sbjct 655 YLAANRNKRSVTVDLKSDEGRATVEAMLRDADVVVENFRPGSSLQRLFDHRELSERHPHL 714 Query 126 IYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQA 185 + ++A+G +GP PG D+V A AG+ + P+G P + + D + A Sbjct 715 VVLHISAFGDDGPMRDEPGYDMVAQATAGLMSLTGEPDGPPLKAGYAMGDLGAALFGAIG 774 Query 186 VLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVG 245 VL+AL+ R R G+ + ++Y+ QL +H+N A E RR G G Sbjct 775 VLSALVERSRTGLGQYLTTSLYE-------TQLALHINWATGYFATGE----TPRRLGSG 823 Query 246 FATQ-PSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTA 304 P AF ADGY+VI+ W +LC + RP+L ED RF R + A+L A Sbjct 824 HPNLVPYQAFPAADGYVVIAVGNDTLWTRLCSALERPELAEDPRFRTNADRVTHRADLVA 883 Query 305 ELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR-GADTITVI 363 +E ALA +T +W +LL+A+G+ A +V +P + V A I + Sbjct 884 LIEKALAPRTVAQWCELLRADGVPAAPIRDLHEVYTSPHTEALGIVSTVEHPTAGPIRQV 943 Query 364 RTPARYASFRAVVTDPPPTAGEHN 387 P Y R V PP G+H Sbjct 944 GFPVNYHGTRPAVRTAPPLLGQHT 967 >gi|339289753|gb|AEJ43863.1| L-carnitine dehydratase/bile acid-inducible protein F [Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1] Length=404 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/385 (33%), Positives = 192/385 (50%), Gaps = 14/385 (3%) Query 8 KPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFL 67 +PL G RVLD ++ +AGP Q+L DLGA+VIKVE+P G+ R+ P + +++YFL Sbjct 2 QPLAGVRVLDLSRVLAGPFCTQILGDLGADVIKVESPQGDETRKYE---PTKDGVSSYFL 58 Query 68 PNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIY 127 NR K+S+ VDL TE ++ + RLA ADV++E FR GTME+ GLG LR+ NP LIY Sbjct 59 AFNRNKRSIAVDLKTEAGREIVRRLAQEADVLVENFRTGTMERWGLGHRSLRAENPRLIY 118 Query 128 ARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGHVLAQAVL 187 A ++ YG GP RPG DL + A +G+ + P + + D +G A ++ Sbjct 119 AAISGYGRTGPWKDRPGYDLAIQAASGLMSVTGEAGRGPVRTGWSIADLTAGLWAALSIC 178 Query 188 AALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRRKGVGFA 247 AALL R+ G ++ ++++ V L + +R F+ Sbjct 179 AALLERQHTGRGTYLETSLFEGQVALMTYYATAYFL----------TGHVGERLGSSHFS 228 Query 248 TQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELE 307 P A ADG++V++ +++ C IG P+L +D RF R + +EL A+LE Sbjct 229 LAPYQALEAADGWLVVAVGNDGLFRRFCEAIGSPELADDPRFQTNGLRVRHQSELAAQLE 288 Query 308 LALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGR-GADTITVIRTP 366 LA +T EW ++L G+ + V+ A + E G + V R+P Sbjct 289 ARLAERTVQEWEKVLMEAGVPCSAVNRIDDVLHLEQVAARGMLWETQYPGVGSFCVTRSP 348 Query 367 ARYASFRAVVTDPPPTAGEHNAVFL 391 + + PP GEH L Sbjct 349 FFGEGWDLHLRQRPPGLGEHTEEIL 373 Lambda K H 0.317 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 770431090464 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40