BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3278c
Length=172
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610414|ref|NP_217795.1| transmembrane protein [Mycobacteriu... 346 8e-94
gi|31794458|ref|NP_856951.1| transmembrane protein [Mycobacteriu... 345 2e-93
gi|224991660|ref|YP_002646349.1| putative transmembrane protein ... 343 7e-93
gi|183981280|ref|YP_001849571.1| hypothetical protein MMAR_1258 ... 321 3e-86
gi|118618097|ref|YP_906429.1| hypothetical protein MUL_2630 [Myc... 320 4e-86
gi|254819512|ref|ZP_05224513.1| hypothetical protein MintA_06284... 312 1e-83
gi|342861491|ref|ZP_08718138.1| hypothetical protein MCOL_21501 ... 310 5e-83
gi|240171614|ref|ZP_04750273.1| hypothetical protein MkanA1_2002... 305 1e-81
gi|466864|gb|AAA85940.1| B1308_F2_67 [Mycobacterium leprae] 305 2e-81
gi|15827310|ref|NP_301573.1| hypothetical protein ML0733 [Mycoba... 304 4e-81
gi|41409494|ref|NP_962330.1| hypothetical protein MAP3396c [Myco... 298 2e-79
gi|118464801|ref|YP_883388.1| hypothetical protein MAV_4246 [Myc... 298 2e-79
gi|296168923|ref|ZP_06850592.1| bacterial membrane flanked domai... 297 3e-79
gi|118471315|ref|YP_886188.1| membrane flanked domain-containing... 267 4e-70
gi|169630704|ref|YP_001704353.1| hypothetical protein MAB_3625c ... 257 5e-67
gi|126433934|ref|YP_001069625.1| membrane-flanked domain-contain... 255 2e-66
gi|108798267|ref|YP_638464.1| membrane-flanked domain-containing... 255 2e-66
gi|315445626|ref|YP_004078505.1| hypothetical protein Mspyr1_408... 244 4e-63
gi|145225327|ref|YP_001136005.1| membrane-flanked domain-contain... 240 5e-62
gi|120402708|ref|YP_952537.1| hypothetical protein Mvan_1707 [My... 238 2e-61
gi|333991675|ref|YP_004524289.1| transmembrane protein [Mycobact... 226 1e-57
gi|262201784|ref|YP_003272992.1| membrane-flanked domain-contain... 186 8e-46
gi|343926716|ref|ZP_08766214.1| hypothetical protein GOALK_067_0... 180 7e-44
gi|226305621|ref|YP_002765581.1| hypothetical protein RER_21340 ... 175 2e-42
gi|229489680|ref|ZP_04383543.1| bacterial membrane flanked domai... 174 4e-42
gi|326382018|ref|ZP_08203711.1| membrane-flanked domain-containi... 172 2e-41
gi|325675641|ref|ZP_08155325.1| membrane protein [Rhodococcus eq... 168 3e-40
gi|336320007|ref|YP_004599975.1| membrane-flanked domain-contain... 162 2e-38
gi|312140720|ref|YP_004008056.1| integral membrane protein [Rhod... 160 7e-38
gi|54022963|ref|YP_117205.1| hypothetical protein nfa9960 [Nocar... 156 9e-37
gi|256380375|ref|YP_003104035.1| membrane-flanked domain-contain... 154 5e-36
gi|111023258|ref|YP_706230.1| hypothetical protein RHA1_ro06295 ... 149 2e-34
gi|226365768|ref|YP_002783551.1| hypothetical protein ROP_63590 ... 148 3e-34
gi|302524265|ref|ZP_07276607.1| membrane-flanked domain-containi... 145 1e-33
gi|257054657|ref|YP_003132489.1| hypothetical protein Svir_05910... 143 1e-32
gi|317509331|ref|ZP_07966951.1| membrane flanked domain-containi... 137 8e-31
gi|296138774|ref|YP_003646017.1| membrane-flanked domain-contain... 135 2e-30
gi|300782903|ref|YP_003763194.1| membrane protein [Amycolatopsis... 131 3e-29
gi|331699007|ref|YP_004335246.1| membrane protein [Pseudonocardi... 130 5e-29
gi|296395353|ref|YP_003660237.1| membrane-flanked domain-contain... 127 4e-28
gi|134102933|ref|YP_001108594.1| membrane-flanked domain-contain... 122 2e-26
gi|158317654|ref|YP_001510162.1| membrane-flanked domain-contain... 118 4e-25
gi|312199910|ref|YP_004019971.1| hypothetical protein FraEuI1c_6... 116 1e-24
gi|330465765|ref|YP_004403508.1| membrane-flanked domain-contain... 108 2e-22
gi|302865354|ref|YP_003833991.1| membrane-flanked domain [Microm... 107 5e-22
gi|340358465|ref|ZP_08680983.1| hypothetical protein HMPREF9062_... 106 2e-21
gi|324998343|ref|ZP_08119455.1| membrane-flanked domain-containi... 104 4e-21
gi|336177081|ref|YP_004582456.1| hypothetical protein FsymDg_103... 104 4e-21
gi|291298322|ref|YP_003509600.1| hypothetical protein Snas_0795 ... 104 5e-21
gi|333921487|ref|YP_004495068.1| hypothetical protein AS9A_3830 ... 102 1e-20
>gi|15610414|ref|NP_217795.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|148663141|ref|YP_001284664.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
gi|148824480|ref|YP_001289234.1| transmembrane protein [Mycobacterium tuberculosis F11]
71 more sequence titles
Length=172
Score = 346 bits (887), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 172/172 (100%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH
Sbjct 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD
Sbjct 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS
Sbjct 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
>gi|31794458|ref|NP_856951.1| transmembrane protein [Mycobacterium bovis AF2122/97]
gi|121639167|ref|YP_979391.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|31620054|emb|CAD95398.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121494815|emb|CAL73296.1| Probable conserved transmembrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|341603206|emb|CCC65884.1| probable conserved transmembrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=172
Score = 345 bits (884), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/172 (99%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH
Sbjct 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD
Sbjct 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYH+VFDTLGSDESPS
Sbjct 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHKVFDTLGSDESPS 172
>gi|224991660|ref|YP_002646349.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|224774775|dbj|BAH27581.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
Length=172
Score = 343 bits (879), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 170/172 (99%), Positives = 171/172 (99%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQ AKNVIH
Sbjct 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQTAKNVIH 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD
Sbjct 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYH+VFDTLGSDESPS
Sbjct 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHKVFDTLGSDESPS 172
>gi|183981280|ref|YP_001849571.1| hypothetical protein MMAR_1258 [Mycobacterium marinum M]
gi|183174606|gb|ACC39716.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=172
Score = 321 bits (822), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 153/172 (89%), Positives = 164/172 (96%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP+N +AAGEQVVLHRHPHW RL+WPVVVL+L+TGLAA GSGFVNST WQQ+AKN+IH
Sbjct 1 MGYPDNAMAAGEQVVLHRHPHWTRLVWPVVVLILITGLAALGSGFVNSTQWQQLAKNIIH 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVM+R GVLTRSGIDIPLARINSVEFRD
Sbjct 61 GVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMYRQGVLTRSGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RIFER+ RTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGS+E+PS
Sbjct 121 RIFERMLRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSEEAPS 172
>gi|118618097|ref|YP_906429.1| hypothetical protein MUL_2630 [Mycobacterium ulcerans Agy99]
gi|118570207|gb|ABL04958.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=172
Score = 320 bits (821), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 153/172 (89%), Positives = 164/172 (96%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP+N +AAGEQVVLHRHPHW RL+WPVVVL+L+TGLAA GSGFVNST WQQ+AKN+IH
Sbjct 1 MGYPDNAMAAGEQVVLHRHPHWARLVWPVVVLILITGLAALGSGFVNSTQWQQLAKNIIH 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVM+R GVLTRSGIDIPLARINSVEFRD
Sbjct 61 GVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMYRQGVLTRSGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RIFER+ RTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGS+E+PS
Sbjct 121 RIFERMLRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSEEAPS 172
>gi|254819512|ref|ZP_05224513.1| hypothetical protein MintA_06284 [Mycobacterium intracellulare
ATCC 13950]
Length=172
Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/172 (87%), Positives = 165/172 (96%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP+NVLAAGE V++HRHPHW RLIWPV+VL+++TGLAAFGSG++NST W+Q+AKN+IH
Sbjct 1 MGYPDNVLAAGEHVIVHRHPHWKRLIWPVLVLIVVTGLAAFGSGYLNSTHWEQLAKNIIH 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VIWGIWLVIVGWLTLWPF SWLTTHFVVTNRRVMFRHGVLTR+GIDIPLARINSVEFRD
Sbjct 61 GVIWGIWLVIVGWLTLWPFGSWLTTHFVVTNRRVMFRHGVLTRTGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RI ER+FRTGTLIIESASQDPLEFY+IPRLREVHALLYHEVFDTLGS+ESPS
Sbjct 121 RITERMFRTGTLIIESASQDPLEFYDIPRLREVHALLYHEVFDTLGSEESPS 172
>gi|342861491|ref|ZP_08718138.1| hypothetical protein MCOL_21501 [Mycobacterium colombiense CECT
3035]
gi|342130980|gb|EGT84269.1| hypothetical protein MCOL_21501 [Mycobacterium colombiense CECT
3035]
Length=172
Score = 310 bits (794), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 148/172 (87%), Positives = 164/172 (96%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP+NVLAAGE V++HRHPHW RLIWPV+V +L+TGLAAFGSG++NST ++Q+AKN+IH
Sbjct 1 MGYPDNVLAAGEHVIVHRHPHWKRLIWPVLVFILVTGLAAFGSGYLNSTHFEQLAKNIIH 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGV TR+GIDIPLARINSVEFRD
Sbjct 61 GVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVATRTGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RI ER+FRTGTLIIESASQDPLEFY+IPRLREVHALLYHEVFDTLGS+ESPS
Sbjct 121 RITERMFRTGTLIIESASQDPLEFYDIPRLREVHALLYHEVFDTLGSEESPS 172
>gi|240171614|ref|ZP_04750273.1| hypothetical protein MkanA1_20028 [Mycobacterium kansasii ATCC
12478]
Length=172
Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/172 (87%), Positives = 160/172 (94%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP+N +AAGEQVVLHRHPHW RLIWPVVVL+L+TGLAA GSGFVNST W Q+ KN++H
Sbjct 1 MRYPDNAMAAGEQVVLHRHPHWKRLIWPVVVLILVTGLAALGSGFVNSTQWPQLTKNILH 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VIWGIWLVIVGW TLWPFLSWLTTHFVVTNRRVMFRHGVLTR+GIDIPLARINSVEFRD
Sbjct 61 GVIWGIWLVIVGWGTLWPFLSWLTTHFVVTNRRVMFRHGVLTRTGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RI ER+FRTGTLIIESAS DPLEF +IPRLREVHALLYHEVFDTLGS+E+PS
Sbjct 121 RITERMFRTGTLIIESASHDPLEFPDIPRLREVHALLYHEVFDTLGSEEAPS 172
>gi|466864|gb|AAA85940.1| B1308_F2_67 [Mycobacterium leprae]
Length=181
Score = 305 bits (780), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/172 (84%), Positives = 159/172 (93%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP N L AGEQVVLHRHPHW RLIWP VVL+L TGL +FGSG+VNST W Q+AKNVI+
Sbjct 10 MRYPGNTLVAGEQVVLHRHPHWKRLIWPAVVLILATGLVSFGSGYVNSTHWAQVAKNVIY 69
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
V+WG+WLVIVGWLTLWPFL+WLTTHFVVTNRRVMFR G LTRSG+DIPLARINSVEFRD
Sbjct 70 GVLWGVWLVIVGWLTLWPFLNWLTTHFVVTNRRVMFRQGTLTRSGVDIPLARINSVEFRD 129
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
R+FER+FRTGTLIIESASQDP+EFYNIPRLR+++ALLYHEVFDTLGS+ESPS
Sbjct 130 RLFERMFRTGTLIIESASQDPVEFYNIPRLRQMYALLYHEVFDTLGSEESPS 181
>gi|15827310|ref|NP_301573.1| hypothetical protein ML0733 [Mycobacterium leprae TN]
gi|221229788|ref|YP_002503204.1| hypothetical protein MLBr_00733 [Mycobacterium leprae Br4923]
gi|13092859|emb|CAC30242.1| putative membrane protein [Mycobacterium leprae]
gi|219932895|emb|CAR70827.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=172
Score = 304 bits (778), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 143/172 (84%), Positives = 159/172 (93%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP N L AGEQVVLHRHPHW RLIWP VVL+L TGL +FGSG+VNST W Q+AKNVI+
Sbjct 1 MRYPGNTLVAGEQVVLHRHPHWKRLIWPAVVLILATGLVSFGSGYVNSTHWAQVAKNVIY 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
V+WG+WLVIVGWLTLWPFL+WLTTHFVVTNRRVMFR G LTRSG+DIPLARINSVEFRD
Sbjct 61 GVLWGVWLVIVGWLTLWPFLNWLTTHFVVTNRRVMFRQGTLTRSGVDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
R+FER+FRTGTLIIESASQDP+EFYNIPRLR+++ALLYHEVFDTLGS+ESPS
Sbjct 121 RLFERMFRTGTLIIESASQDPVEFYNIPRLRQMYALLYHEVFDTLGSEESPS 172
>gi|41409494|ref|NP_962330.1| hypothetical protein MAP3396c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398325|gb|AAS05946.1| hypothetical protein MAP_3396c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336459640|gb|EGO38575.1| hypothetical protein MAPs_01620 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=172
Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 144/172 (84%), Positives = 160/172 (94%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP+NVLAAGE V++HRHPHW RLI PV+VLVL TGLAAFGSG+++ST ++Q+AKN+IH
Sbjct 1 MGYPDNVLAAGEHVIVHRHPHWKRLIGPVLVLVLGTGLAAFGSGYLDSTHFEQLAKNIIH 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VIWGIWLVIVGWLTLWPF WLTTHFVVTNRRVMFRHGV TR+GIDIPLARINSVEFRD
Sbjct 61 GVIWGIWLVIVGWLTLWPFFGWLTTHFVVTNRRVMFRHGVATRTGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RI ER+ RTGTLIIESASQDPLEF++IPRLREVHALLYHEVFDTLGS+ESPS
Sbjct 121 RITERMLRTGTLIIESASQDPLEFHDIPRLREVHALLYHEVFDTLGSEESPS 172
>gi|118464801|ref|YP_883388.1| hypothetical protein MAV_4246 [Mycobacterium avium 104]
gi|254776682|ref|ZP_05218198.1| hypothetical protein MaviaA2_18726 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118166088|gb|ABK66985.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=172
Score = 298 bits (762), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/172 (84%), Positives = 160/172 (94%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP+NVLAAGE V++HRHPHW RLI PV+VL+L TGLAAFGSG+++ST ++Q+AKN+IH
Sbjct 1 MGYPDNVLAAGEHVIVHRHPHWKRLIGPVLVLILGTGLAAFGSGYLDSTHFEQLAKNIIH 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VIWGIWLVIVGWLTLWPF WLTTHFVVTNRRVMFRHGV TR+GIDIPLARINSVEFRD
Sbjct 61 GVIWGIWLVIVGWLTLWPFFGWLTTHFVVTNRRVMFRHGVATRTGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RI ER+ RTGTLIIESASQDPLEF++IPRLREVHALLYHEVFDTLGS+ESPS
Sbjct 121 RITERMLRTGTLIIESASQDPLEFHDIPRLREVHALLYHEVFDTLGSEESPS 172
>gi|296168923|ref|ZP_06850592.1| bacterial membrane flanked domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896392|gb|EFG76045.1| bacterial membrane flanked domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=172
Score = 297 bits (761), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/172 (86%), Positives = 163/172 (95%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
MSYP+NVLAAGEQV++HRHPHW RLIWPVV L+L T LA+FGSG+++ST W Q+AKN+I+
Sbjct 1 MSYPDNVLAAGEQVIVHRHPHWKRLIWPVVALLLATALASFGSGYLDSTHWDQLAKNIIY 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VIWG+WLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGV TR+GIDIPLARINSVEFRD
Sbjct 61 GVIWGVWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVATRTGIDIPLARINSVEFRD 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
RI ER+FRTGTLIIESASQDPLEFY+IPRLREVHALLYHEVFDTLGS+ESPS
Sbjct 121 RITERMFRTGTLIIESASQDPLEFYDIPRLREVHALLYHEVFDTLGSEESPS 172
>gi|118471315|ref|YP_886188.1| membrane flanked domain-containing protein [Mycobacterium smegmatis
str. MC2 155]
gi|118172602|gb|ABK73498.1| Bacterial membrane flanked domain protein [Mycobacterium smegmatis
str. MC2 155]
Length=172
Score = 267 bits (683), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 129/172 (75%), Positives = 147/172 (86%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP+NVLA EQVVLHRHPHW RLI PV +L++ T LA+FG+ +VN+ W A V+
Sbjct 1 MGYPDNVLAGDEQVVLHRHPHWKRLIGPVFILIVATALASFGAAYVNTLHWDPTATLVVS 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VI IWLVIVGWLTLWPFL+WLTTHFV+T+RRVMFRHG+LTRSGIDIPLARINSVEFR
Sbjct 61 LVILAIWLVIVGWLTLWPFLTWLTTHFVITDRRVMFRHGLLTRSGIDIPLARINSVEFRH 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
+ +RI RTGTLIIESASQDPLEFY+IPR+ +VHALLYHEVFDTLGSDESPS
Sbjct 121 GLSDRILRTGTLIIESASQDPLEFYDIPRVEQVHALLYHEVFDTLGSDESPS 172
>gi|169630704|ref|YP_001704353.1| hypothetical protein MAB_3625c [Mycobacterium abscessus ATCC
19977]
gi|169242671|emb|CAM63699.1| Conserved hypothetical transmembrane protein [Mycobacterium abscessus]
Length=185
Score = 257 bits (656), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 124/172 (73%), Positives = 145/172 (85%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPENVLA EQVVLHRHPHW RLI P +VL+L TG+AAF + V++T WQ AKNV+
Sbjct 1 MGYPENVLADDEQVVLHRHPHWKRLIGPALVLILSTGIAAFVAAMVDNTDWQSTAKNVVM 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
I +WLV+VGWL+LWPFL+WLTTHFV+T+RRVMFRHG+L+RSGIDIPLARINSVEFR
Sbjct 61 IAIGVVWLVLVGWLSLWPFLNWLTTHFVITDRRVMFRHGLLSRSGIDIPLARINSVEFRH 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
+ +RI RTGTLIIESASQDPLEF+ IPR+ VH+LLYHEVFDTLGS+E S
Sbjct 121 GLVDRILRTGTLIIESASQDPLEFHEIPRVEYVHSLLYHEVFDTLGSEEGDS 172
>gi|126433934|ref|YP_001069625.1| membrane-flanked domain-containing protein [Mycobacterium sp.
JLS]
gi|126233734|gb|ABN97134.1| membrane-flanked domain [Mycobacterium sp. JLS]
Length=172
Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/172 (72%), Positives = 146/172 (85%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP+NVLA EQVVLHRHPHW RLI V+VL+ + AAF +G+VN+ W AKNVI
Sbjct 1 MGYPDNVLARDEQVVLHRHPHWKRLIGAVLVLLFTSAAAAFVAGYVNTLEWDASAKNVIF 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VI GIWLV+VGWLT+WPFL+W TTHFV+T+RRVMFRHG++TR+GIDIPLARINSVEFR
Sbjct 61 LVIGGIWLVLVGWLTVWPFLNWWTTHFVITDRRVMFRHGLVTRAGIDIPLARINSVEFRH 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
+ +RI RTGTL+IESA+QDPLEF++IPR+ VHALLYHEVFDTLGS+ESPS
Sbjct 121 GLLDRILRTGTLVIESAAQDPLEFHDIPRVERVHALLYHEVFDTLGSEESPS 172
>gi|108798267|ref|YP_638464.1| membrane-flanked domain-containing protein [Mycobacterium sp.
MCS]
gi|119867363|ref|YP_937315.1| membrane-flanked domain-containing protein [Mycobacterium sp.
KMS]
gi|108768686|gb|ABG07408.1| membrane-flanked domain protein [Mycobacterium sp. MCS]
gi|119693452|gb|ABL90525.1| membrane-flanked domain [Mycobacterium sp. KMS]
Length=172
Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/172 (72%), Positives = 146/172 (85%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP+NVLA EQVVLHRHPHW RLI V+VL+ + AAF +G+VN+ W AKNVI
Sbjct 1 MGYPDNVLARDEQVVLHRHPHWKRLIGAVLVLLFTSAAAAFVAGYVNTLEWDASAKNVIF 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VI GIWLV+VGWLT+WPFL+W TTHFV+T+RRVMFRHG++TR+GIDIPLARINSVEFR
Sbjct 61 LVIGGIWLVLVGWLTVWPFLNWWTTHFVITDRRVMFRHGLVTRAGIDIPLARINSVEFRH 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
+ +RI RTGTL+IESA+QDPLEF++IPR+ VHALLYHEVFDTLGS+ESPS
Sbjct 121 GLLDRILRTGTLVIESAAQDPLEFHDIPRVEHVHALLYHEVFDTLGSEESPS 172
>gi|315445626|ref|YP_004078505.1| hypothetical protein Mspyr1_40840 [Mycobacterium sp. Spyr1]
gi|315263929|gb|ADU00671.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=172
Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 118/172 (69%), Positives = 146/172 (85%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPENVLA E VVLHRHPHW RL P +VL++ + AAF + +V++ W+Q AKN++
Sbjct 1 MGYPENVLAKDEHVVLHRHPHWGRLTIPALVLIIASAAAAFVAAYVSTLNWEQTAKNIVF 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
AVI IWL++VGWLT+WPFL+W TTHFV+T+RRVM+RHG++TRSGIDIPLARINSVEFR
Sbjct 61 AVIAAIWLILVGWLTVWPFLNWWTTHFVITDRRVMYRHGLITRSGIDIPLARINSVEFRH 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
+ +R+FRTGTLIIESA+QDPLEF +IPR+ VH+LLYHEVFDTLGS+ESPS
Sbjct 121 GLMDRVFRTGTLIIESAAQDPLEFQDIPRVERVHSLLYHEVFDTLGSEESPS 172
>gi|145225327|ref|YP_001136005.1| membrane-flanked domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|145217813|gb|ABP47217.1| membrane-flanked domain [Mycobacterium gilvum PYR-GCK]
Length=181
Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 118/172 (69%), Positives = 144/172 (84%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
+ YPENVLA E VVLHRHPHW RL+ P V L++ + AAF +G+VN+ W+Q AK ++
Sbjct 10 VGYPENVLAKDEHVVLHRHPHWGRLVLPAVFLIIASAAAAFIAGYVNTLNWEQAAKTIVF 69
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VI IWLV+VGWL +WPFL+W TTHFV+T+RRVM+RHG++TRSGIDIPLARINSVEFR
Sbjct 70 GVIAAIWLVLVGWLAVWPFLNWWTTHFVITDRRVMYRHGLITRSGIDIPLARINSVEFRH 129
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
+ +RIFRTGTLIIESA+QDPLEF +IPR+ VH+LLYHEVFDTLGS+ESPS
Sbjct 130 GLVDRIFRTGTLIIESAAQDPLEFQDIPRVEYVHSLLYHEVFDTLGSEESPS 181
>gi|120402708|ref|YP_952537.1| hypothetical protein Mvan_1707 [Mycobacterium vanbaalenii PYR-1]
gi|119955526|gb|ABM12531.1| membrane-flanked domain [Mycobacterium vanbaalenii PYR-1]
Length=172
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/172 (69%), Positives = 146/172 (85%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPENVLA E VVLHRHPHW RL P ++L++ + AAF +G+VN+ W+Q AK ++
Sbjct 1 MGYPENVLATDEHVVLHRHPHWGRLTIPALILIIASAAAAFLAGYVNTLNWEQNAKTIVF 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
AVI +WL++VGWL++WPFL+W TTHFV+T+RRVM+RHG+LTRSGIDIPLARINSVEFR
Sbjct 61 AVIAAVWLILVGWLSIWPFLNWWTTHFVITDRRVMYRHGLLTRSGIDIPLARINSVEFRH 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
+ +R+FRTGTLIIESASQDPLEF +IPR+ VH+LLYHEVFDTLGS+ESPS
Sbjct 121 GLVDRMFRTGTLIIESASQDPLEFQDIPRVEHVHSLLYHEVFDTLGSEESPS 172
>gi|333991675|ref|YP_004524289.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333487642|gb|AEF37034.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=169
Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/164 (73%), Positives = 135/164 (83%), Gaps = 0/164 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPE+VLA EQVVLHRHPH RL+ PV+ L+L T A F SGFVN W AKNV+
Sbjct 1 MGYPESVLAEDEQVVLHRHPHVKRLLGPVLALLLATACAGFASGFVNPRAWDPNAKNVVF 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
AVIW IWLV+VGWL LWPFLSWLTTHFVVT+RRVM+RHG+LTRSGIDI LARINSVEF
Sbjct 61 AVIWAIWLVVVGWLALWPFLSWLTTHFVVTDRRVMYRHGLLTRSGIDIALARINSVEFVH 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDT 164
+ +R+ RTGTLIIESASQ+PLEFY+IPR+ +VHALLYHEVFD
Sbjct 121 GLIDRMLRTGTLIIESASQEPLEFYDIPRVEQVHALLYHEVFDN 164
>gi|262201784|ref|YP_003272992.1| membrane-flanked domain-containing protein [Gordonia bronchialis
DSM 43247]
gi|262085131|gb|ACY21099.1| membrane-flanked domain protein [Gordonia bronchialis DSM 43247]
Length=185
Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/171 (51%), Positives = 122/171 (72%), Gaps = 1/171 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M+YP+ LA GE++VLHRHPHW L+ P ++ V+ T +A +G + + V+
Sbjct 1 MAYPQENLAPGERIVLHRHPHWKCLLAPFLIFVVTTAVAGVLAGVITGSDLGSTPTTVLL 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
++ IW+ + GW + P +SW TTHFV+T+RRV+FR+G++TRSGIDIP+ RIN+VEFR
Sbjct 61 IIVGVIWVAVFGWYFVRPLVSWKTTHFVLTDRRVIFRNGIITRSGIDIPIRRINTVEFRH 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESP 171
+ +R+ RTGTL+IESAS DPL F +IP++ +VHALLYHEV D L DE P
Sbjct 121 GLIDRMLRTGTLVIESASDDPLSFDDIPQVEKVHALLYHEVLD-LADDEDP 170
>gi|343926716|ref|ZP_08766214.1| hypothetical protein GOALK_067_00990 [Gordonia alkanivorans NBRC
16433]
gi|343763468|dbj|GAA13140.1| hypothetical protein GOALK_067_00990 [Gordonia alkanivorans NBRC
16433]
Length=197
Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 84/172 (49%), Positives = 118/172 (69%), Gaps = 0/172 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M+YP LA GE+VVLHRHPHW L+ P ++ ++T A +G + + + V+
Sbjct 5 MAYPRENLAPGERVVLHRHPHWKCLLGPFLLFAIITAAAGVLAGVITGSSLGPTPRTVLL 64
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
V+ W + + W + P LSW TTHFV+T+RRVMFR+G+LTRSGIDIP+ RIN+VEFR
Sbjct 65 IVVGVAWALGLAWYFVRPLLSWKTTHFVLTDRRVMFRNGILTRSGIDIPIRRINTVEFRH 124
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
+ +R+ RTGTL+IESAS +PL F +IP++ +VH+LLYHEV + D+ P
Sbjct 125 GVIDRMLRTGTLVIESASDEPLSFDDIPQVEKVHSLLYHEVLEMYADDDHPD 176
>gi|226305621|ref|YP_002765581.1| hypothetical protein RER_21340 [Rhodococcus erythropolis PR4]
gi|226184738|dbj|BAH32842.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=196
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/165 (51%), Positives = 113/165 (69%), Gaps = 1/165 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPE+ LA E+++LHRHPHW L+ P + VL T +A F G T A+ V
Sbjct 9 MGYPEDALAQDEELILHRHPHWKMLVLPALTFVLATAVAGFLLGLAQ-TRLDGTARTVSS 67
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
I IWL +V W ++ PF W THF+VT+RRV+ RHGVLT +GIDIP+ RI++V+FR
Sbjct 68 IAIGIIWLGVVAWRSVAPFTVWKFTHFIVTDRRVLIRHGVLTHTGIDIPMGRISNVQFRH 127
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTL 165
+ +R+ +TGTL+I SAS DPLEF +IP + VHALLYH+VFD++
Sbjct 128 GLIDRMLKTGTLVIASASDDPLEFDDIPDVEHVHALLYHQVFDSM 172
>gi|229489680|ref|ZP_04383543.1| bacterial membrane flanked domain protein [Rhodococcus erythropolis
SK121]
gi|229323777|gb|EEN89535.1| bacterial membrane flanked domain protein [Rhodococcus erythropolis
SK121]
Length=188
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/165 (51%), Positives = 113/165 (69%), Gaps = 1/165 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPE+ LA E+++LHRHPHW L+ P + VL T +A F G T A+ V
Sbjct 1 MGYPEDALAQDEELILHRHPHWKMLVLPALTFVLATAVAGFLLGLAQ-TRLDGTARTVSS 59
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
+ IWL +V W ++ PF W THF+VT+RRV+ RHGVLT +GIDIP+ RI++V+FR
Sbjct 60 IAVGIIWLGVVAWRSVAPFTVWKFTHFIVTDRRVLIRHGVLTHTGIDIPMGRISNVQFRH 119
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTL 165
+ +R+ +TGTL+I SAS DPLEF +IP + VHALLYH+VFD++
Sbjct 120 GLIDRMLKTGTLVIASASDDPLEFDDIPDVEHVHALLYHQVFDSM 164
>gi|326382018|ref|ZP_08203711.1| membrane-flanked domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326199444|gb|EGD56625.1| membrane-flanked domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length=184
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/172 (50%), Positives = 112/172 (66%), Gaps = 3/172 (1%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YP LA GE VV+HRHPHW L+ PV+ + TG A G+ ++ K
Sbjct 1 MGYPRENLAPGEVVVIHRHPHWKSLLLPVLTFWMFTGAAGVAIGYTRASSMADDVKFWFT 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
VI +WL+ W P LSW TTHFVVT+RRV++R+G+LTRSGIDIP+ RIN+VEFR
Sbjct 61 VVIGVLWLLAAAWFLARPLLSWKTTHFVVTDRRVIYRNGILTRSGIDIPIRRINTVEFRH 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
+ +R+ RTGTL+IESAS +PL F++IP++ VHA LY E+ D D+ P
Sbjct 121 GLVDRMLRTGTLVIESASDEPLSFHDIPQVEAVHAQLYQELLD---EDDEPD 169
>gi|325675641|ref|ZP_08155325.1| membrane protein [Rhodococcus equi ATCC 33707]
gi|325553612|gb|EGD23290.1| membrane protein [Rhodococcus equi ATCC 33707]
Length=194
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/170 (49%), Positives = 113/170 (67%), Gaps = 1/170 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPE+ LAA E++VLHRHPHW L+ PV + VL + + G A V
Sbjct 1 MGYPEDALAADEELVLHRHPHWKMLVVPVTIFVLSAAIGGYLLGLAQRR-LSDGASLVAS 59
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
AVI WL +V W TL P L W +THF+VT+RRVM RHG++T +GIDIP+ RI++V+FR
Sbjct 60 AVIVVAWLALVVWKTLVPVLRWRSTHFIVTDRRVMIRHGIMTHTGIDIPMNRISNVQFRH 119
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDES 170
+ +R+ RTGTL+I ++S DPLEF +IP +++VH+LLY +VFD S
Sbjct 120 GLVDRMLRTGTLMIVASSDDPLEFDDIPEVQKVHSLLYRQVFDATNDPHS 169
>gi|336320007|ref|YP_004599975.1| membrane-flanked domain-containing protein [Cellvibrio gilvus
ATCC 13127]
gi|336103588|gb|AEI11407.1| membrane-flanked domain protein [Cellvibrio gilvus ATCC 13127]
Length=171
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/171 (53%), Positives = 118/171 (70%), Gaps = 4/171 (2%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKN-VI 59
M YP+ +L AGEQVVLHRHPH LI P ++L+++T L A+ + V T + A+ V+
Sbjct 1 MGYPKEMLTAGEQVVLHRHPHLKALIGPGLLLLVVTALGAWAA--VWGTDGARGAEGPVV 58
Query 60 HAVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFR 119
+WL+++ W L + W TTHFV+T+RRVMFR GV TRSGIDIPL R+NSV+FR
Sbjct 59 AVAAGVVWLLVLVWF-LARLVRWRTTHFVITDRRVMFRKGVFTRSGIDIPLLRVNSVQFR 117
Query 120 DRIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDES 170
+RI RTGTLIIESAS DPLEF +IP + +VHALLY + D+L D+
Sbjct 118 HGFVDRILRTGTLIIESASDDPLEFDDIPGVEKVHALLYARLDDSLDGDDE 168
>gi|312140720|ref|YP_004008056.1| integral membrane protein [Rhodococcus equi 103S]
gi|311890059|emb|CBH49377.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=194
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 83/170 (49%), Positives = 113/170 (67%), Gaps = 1/170 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPE+ LAA E++VLHRHPHW L+ PV + VL + + G A V
Sbjct 1 MGYPEDALAADEELVLHRHPHWKMLVVPVTIFVLSAAIGGYLLGLAQRR-LSDGASVVAS 59
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
AVI WL +V W TL P L W +THF+VT+RRVM RHG++T +GIDIP+ RI++V+FR
Sbjct 60 AVIVVAWLALVVWKTLVPVLRWRSTHFIVTDRRVMIRHGIMTHTGIDIPMNRISNVQFRH 119
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDES 170
+ +R+ RTGTL+I ++S DPLEF +IP +++VH+LLY +VFD S
Sbjct 120 GLVDRMLRTGTLMIVASSDDPLEFDDIPEVQKVHSLLYRQVFDATNDPHS 169
>gi|54022963|ref|YP_117205.1| hypothetical protein nfa9960 [Nocardia farcinica IFM 10152]
gi|54014471|dbj|BAD55841.1| putative membrane protein [Nocardia farcinica IFM 10152]
Length=167
Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/164 (48%), Positives = 117/164 (72%), Gaps = 1/164 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPE+VLA E ++LHRHPHW L WP+V L++ T LA F G T + + +
Sbjct 1 MGYPEDVLAPDEHLILHRHPHWKMLFWPIVTLIVATALAGFAGGLAYRTT-EGTLRTALL 59
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
++ +W V+V W + P L+W +THF+VT RRV+ R GV+T +GIDIP++RI+SV+FR
Sbjct 60 ILVPALWAVVVVWRVVAPVLAWKSTHFIVTERRVLVRQGVVTHTGIDIPMSRISSVQFRH 119
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDT 164
+F+R+ TGTLII S+S++P+E+ +IP +++VHALLY++VF+
Sbjct 120 GLFDRLLGTGTLIIGSSSEEPMEYDDIPAVQKVHALLYYQVFEA 163
>gi|256380375|ref|YP_003104035.1| membrane-flanked domain-containing protein [Actinosynnema mirum
DSM 43827]
gi|255924678|gb|ACU40189.1| membrane-flanked domain protein [Actinosynnema mirum DSM 43827]
Length=170
Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/171 (44%), Positives = 107/171 (63%), Gaps = 4/171 (2%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M+YP+++L+ E VV+H HPHW L+ PV+VL+ + G + + + + W+ A I
Sbjct 1 MAYPDDLLSPAEHVVIHNHPHWKMLLVPVLVLIAVAGGGGYLAALASGSSWELTAWIAIG 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
I L +V WLT+ P + W TTHF++T RVM+R GV TR+G+DIPL RINSV F
Sbjct 61 V----IGLALVLWLTVAPLVRWRTTHFIMTTDRVMYRVGVFTRTGLDIPLTRINSVRFEH 116
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESP 171
+ +R+ GTL+IESAS +PL F +IP + VH+ LY E+ D D P
Sbjct 117 SLLDRVLGCGTLVIESASDEPLSFDDIPNVERVHSTLYREINDNPNDDFQP 167
>gi|111023258|ref|YP_706230.1| hypothetical protein RHA1_ro06295 [Rhodococcus jostii RHA1]
gi|110822788|gb|ABG98072.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=185
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/165 (51%), Positives = 116/165 (71%), Gaps = 1/165 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPE+ LA E+++LHRHPHW L+ P V +L T +A F +GF + A NV+
Sbjct 1 MGYPEDALAEDEELLLHRHPHWKMLLLPAVTFLLATAVAGFAAGFAENK-LDGSALNVVL 59
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
V+ WL +V W + PFLSW THF+VT+RRV+ R GV+T +GIDIP+ RI++V+FR
Sbjct 60 VVVLVAWLGLVVWRCVAPFLSWKFTHFIVTDRRVLIRQGVMTHTGIDIPMGRISNVQFRH 119
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTL 165
+ +R+ RTGTL+I S+S DPLEF +IP ++ VH+LLYH+VFD +
Sbjct 120 GLLDRMLRTGTLVIVSSSDDPLEFDDIPDVQRVHSLLYHQVFDAM 164
>gi|226365768|ref|YP_002783551.1| hypothetical protein ROP_63590 [Rhodococcus opacus B4]
gi|226244258|dbj|BAH54606.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=185
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/165 (50%), Positives = 115/165 (70%), Gaps = 1/165 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M YPE+ LA E+++LHRHPHW L+ P V +L T +A F +GF + A V
Sbjct 1 MGYPEDALAEDEELLLHRHPHWKMLLLPAVTFLLATAVAGFAAGFAENK-LDGSALTVAL 59
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
V+ +WL +V W + PFLSW THF+VT+RRV+ R GV+T +GIDIP+ RI++V+FR
Sbjct 60 VVVLVLWLGLVVWRCVAPFLSWKFTHFIVTDRRVLIRRGVMTHTGIDIPMGRISNVQFRH 119
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTL 165
+ +R+ RTGTL+I S+S DPLEF +IP ++ VH+LLYH+VFD +
Sbjct 120 GLLDRMLRTGTLVIVSSSDDPLEFDDIPDVQRVHSLLYHQVFDAM 164
>gi|302524265|ref|ZP_07276607.1| membrane-flanked domain-containing protein [Streptomyces sp.
AA4]
gi|302433160|gb|EFL04976.1| membrane-flanked domain-containing protein [Streptomyces sp.
AA4]
Length=191
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/172 (46%), Positives = 106/172 (62%), Gaps = 10/172 (5%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAA----FGSGFVNSTPWQQIAK 56
M+YP+++L+ E+VV+H HPH+ LI+P + V+ G A F + PW I
Sbjct 1 MAYPDDLLSQNERVVVHSHPHFKMLIFPFLAFVITVGAAVWLLVVAKDF--AAPWNNITM 58
Query 57 NVIHAVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSV 116
+ AV L+ V WL L P + W TTHF+VT R++ R GVL R+GIDIPL+RINSV
Sbjct 59 IAVAAVA----LIFVVWLFLAPLVRWRTTHFIVTTDRLIAREGVLKRTGIDIPLSRINSV 114
Query 117 EFRDRIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSD 168
+F + +RIF GTLIIESAS +PL F +IP + VH ++Y EV D D
Sbjct 115 QFEHGLLDRIFGCGTLIIESASDEPLRFDDIPHVEHVHTVIYREVNDNPYDD 166
>gi|257054657|ref|YP_003132489.1| hypothetical protein Svir_05910 [Saccharomonospora viridis DSM
43017]
gi|256584529|gb|ACU95662.1| predicted membrane protein [Saccharomonospora viridis DSM 43017]
Length=203
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/174 (45%), Positives = 109/174 (63%), Gaps = 14/174 (8%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVN------STPWQQI 54
++YP+ +L+ GEQVV H+HPH+ LI+P + LV+ A G++ + PW +
Sbjct 4 VAYPDRLLSEGEQVVAHKHPHFKMLIFPTLALVV----TAVAGGYLAWQATDFAAPWDTV 59
Query 55 AKNVIHAVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARIN 114
I AV+ GI +V WL L PF+ W TTHFVVT RV+ R GV+ R+GIDIP+ RI+
Sbjct 60 VLITI-AVVGGILIV---WLFLTPFVRWRTTHFVVTTDRVIVREGVIKRTGIDIPMGRIH 115
Query 115 SVEFRDRIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSD 168
SV F + +RIF GTLIIESAS +PL F +IP++ +H +Y +V D D
Sbjct 116 SVRFEHGLVDRIFGCGTLIIESASDEPLTFDDIPQVERMHTYIYRQVNDNPYDD 169
>gi|317509331|ref|ZP_07966951.1| membrane flanked domain-containing protein [Segniliparus rugosus
ATCC BAA-974]
gi|316252387|gb|EFV11837.1| membrane flanked domain-containing protein [Segniliparus rugosus
ATCC BAA-974]
Length=172
Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/161 (49%), Positives = 103/161 (64%), Gaps = 1/161 (0%)
Query 8 LAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIHAVIWGIW 67
LA E+V L HPHW L+ P+ V +L + F FV+ AK V ++
Sbjct 10 LAPDERVQLRTHPHWKWLLRPISVFLLASLALGFVLYFVDERT-HGTAKTVAEGAAVAVY 68
Query 68 LVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRDRIFERIF 127
V+V F+ WLTT+F VT++RV +RHGV TR GIDIPL+RI+SVEFR + +R+
Sbjct 69 AVVVVLFCAVRFVDWLTTNFYVTDKRVAYRHGVFTREGIDIPLSRISSVEFRHGLVDRML 128
Query 128 RTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSD 168
RTG LIIESAS +PLEF +IP++ +VHA+LY EVFD G D
Sbjct 129 RTGILIIESASDEPLEFEDIPKVEQVHAMLYREVFDLDGHD 169
>gi|296138774|ref|YP_003646017.1| membrane-flanked domain-containing protein [Tsukamurella paurometabola
DSM 20162]
gi|296026908|gb|ADG77678.1| membrane-flanked domain protein [Tsukamurella paurometabola DSM
20162]
Length=182
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/154 (44%), Positives = 94/154 (62%), Gaps = 0/154 (0%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M +P+ VL E+V+LH PH R++ PV+VL L + LA G V +
Sbjct 1 MGFPDKVLVDDERVLLHIRPHAKRMVGPVLVLFLASALAGVAGGLVTRANISGQTAGWLS 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
I +W +IVGW T+ P++ TH VVT+ R+MFR G+L R GIDIPL RINSV++
Sbjct 61 LAIVAVWTLIVGWWTVRPWVVRRATHLVVTDLRIMFRAGILRRRGIDIPLRRINSVQYHQ 120
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVH 154
R+ +R R+G L +ESA DPL+F ++PR+ VH
Sbjct 121 RLVDRALRSGVLTVESAGDDPLDFPDVPRIAAVH 154
>gi|300782903|ref|YP_003763194.1| membrane protein [Amycolatopsis mediterranei U32]
gi|299792417|gb|ADJ42792.1| predicted membrane protein [Amycolatopsis mediterranei U32]
gi|340524279|gb|AEK39484.1| membrane protein [Amycolatopsis mediterranei S699]
Length=196
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/174 (43%), Positives = 107/174 (62%), Gaps = 6/174 (3%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNS--TPWQQIAKNV 58
M+YP+++L+ E VV+H HPH+ LI+P + L++ G + + +PW +
Sbjct 1 MAYPDDLLSEQEHVVVHSHPHFKMLIFPTLALLVTVGAGTWLAILAKDAGSPWNTVGL-- 58
Query 59 IHAVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEF 118
I + LV+V WL L P + W TTHF+VT R++ R GVL R+GIDIP+ RINSV+F
Sbjct 59 --IAIGVVALVLVVWLFLAPLVRWRTTHFIVTTDRLIAREGVLKRTGIDIPMGRINSVQF 116
Query 119 RDRIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
+ +R+F GTLIIESAS +PL F +IP + +VH ++Y EV D D P
Sbjct 117 EHGLLDRVFGCGTLIIESASDEPLRFEDIPHVEKVHTVIYREVNDNPYDDYRPG 170
>gi|331699007|ref|YP_004335246.1| membrane protein [Pseudonocardia dioxanivorans CB1190]
gi|326953696|gb|AEA27393.1| membrane-flanked domain DUF304 [Pseudonocardia dioxanivorans
CB1190]
Length=191
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/170 (44%), Positives = 107/170 (63%), Gaps = 18/170 (10%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M+YP+ +L E+VVLH+HPH L+ PV+V ++ GLA + + + W IA
Sbjct 5 MAYPDELLVDDERVVLHKHPHPKMLVVPVLVFLVTVGLAVYLAALARNLSWATIA----- 59
Query 61 AVIWGIWLVIVGW-------LTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARI 113
W+V+ TL P + W TTHFVVT RRV+ R GV++R GIDIP+ RI
Sbjct 60 ------WIVLAVVAVAVVVRFTLVPLVRWRTTHFVVTTRRVLVREGVVSRQGIDIPIGRI 113
Query 114 NSVEFRDRIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFD 163
NSV+FR I ER+ GTL+IESAS +PLEF ++P + +VH++LY+++ +
Sbjct 114 NSVQFRHTIVERLLGCGTLVIESASDEPLEFEDVPGVEKVHSMLYNQMSE 163
>gi|296395353|ref|YP_003660237.1| membrane-flanked domain-containing protein [Segniliparus rotundus
DSM 44985]
gi|296182500|gb|ADG99406.1| membrane-flanked domain protein [Segniliparus rotundus DSM 44985]
Length=178
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/159 (43%), Positives = 97/159 (62%), Gaps = 1/159 (0%)
Query 8 LAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIHAVIWGIW 67
LA E++ L PHW L P++V +L + FV+ A
Sbjct 16 LAPDERIELRTRPHWKWLFRPILVFLLASAALGVALYFVDERTSGSANTAATIAAAAVYA 75
Query 68 LVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRDRIFERIF 127
+++ + + F+ WLTT+F VTN+RV +RHGV TR+G+DIPL+RI SVEFR + +R+
Sbjct 76 VLVALFCVV-RFIDWLTTNFFVTNKRVAYRHGVFTRTGVDIPLSRIASVEFRHGLLDRVL 134
Query 128 RTGTLIIESASQDPLEFYNIPRLREVHALLYHEVFDTLG 166
RTG L++ESAS +PLEF +IP + +VHA+LY EVFD G
Sbjct 135 RTGVLVVESASDEPLEFEDIPHVEQVHAMLYREVFDLDG 173
>gi|134102933|ref|YP_001108594.1| membrane-flanked domain-containing protein [Saccharopolyspora
erythraea NRRL 2338]
gi|291009690|ref|ZP_06567663.1| membrane-flanked domain-containing protein [Saccharopolyspora
erythraea NRRL 2338]
gi|133915556|emb|CAM05669.1| membrane-flanked domain protein [Saccharopolyspora erythraea
NRRL 2338]
Length=165
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/161 (44%), Positives = 102/161 (64%), Gaps = 4/161 (2%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M+YP+ +L E VV+H+HPHW L+ PV+ L+++ G ++ + W V+
Sbjct 1 MAYPDALLGEHEHVVVHKHPHWKMLVLPVLALLVVVGGGSYLAALAAPLSWHLPVWVVLA 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
V ++V W T+ P L W TTHFV+T R+M R GV TRSG+DIPL RI+SV FR
Sbjct 61 VVA----AIMVVWFTVAPLLRWRTTHFVITTHRLMVREGVFTRSGVDIPLGRISSVRFRH 116
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEV 161
+ +R+ GTL++ESAS +PLEF +IP + +VH LL+ E+
Sbjct 117 GLLDRMVGCGTLVVESASDEPLEFDDIPAVEKVHTLLHREI 157
>gi|158317654|ref|YP_001510162.1| membrane-flanked domain-containing protein [Frankia sp. EAN1pec]
gi|158113059|gb|ABW15256.1| membrane-flanked domain [Frankia sp. EAN1pec]
Length=181
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/160 (38%), Positives = 91/160 (57%), Gaps = 5/160 (3%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
+++P++VL E VVLH HPHW L+ P +V L FG FV + +
Sbjct 13 VAFPDDVLTDDEDVVLHLHPHWGSLVVPAFSVVAALALTTFGVFFVP----DGFLREAVQ 68
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
+I + L +G+ P+L W+TTH+V+T R+M R G++TRSG DIPL +N V +
Sbjct 69 YLILALGLAAIGYFGAAPWLRWITTHYVITTERLMIREGIVTRSGRDIPLVWLNDVSYEQ 128
Query 121 RIFERIFRTGTLIIESASQ-DPLEFYNIPRLREVHALLYH 159
+ +R+ GTL IESA + + ++PR+ +VHA LY
Sbjct 129 SLLDRMLSAGTLSIESAGERGRMVLSHVPRVEDVHATLYE 168
>gi|312199910|ref|YP_004019971.1| hypothetical protein FraEuI1c_6117 [Frankia sp. EuI1c]
gi|311231246|gb|ADP84101.1| membrane-flanked domain protein [Frankia sp. EuI1c]
Length=180
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/167 (43%), Positives = 99/167 (60%), Gaps = 5/167 (2%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
+ +PE++L E VVL HPHW RL+ P+ V++ LA G F S QQ +
Sbjct 14 VGFPEDILTDDEMVVLDLHPHWVRLVGPLACAVVVLLLAVLGVFFTPSGAAQQ----PLQ 69
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
+I I + + WL++ P+L W+TT +V+T RV+ R G+LTRSG DIPL RIN V FR
Sbjct 70 YLILIIAVAALFWLSIRPWLRWVTTRYVITTERVLLRDGILTRSGHDIPLGRINDVGFRQ 129
Query 121 RIFERIFRTGTLIIESASQ-DPLEFYNIPRLREVHALLYHEVFDTLG 166
+FER+F +GTL IESA + L ++P + +VH LY D G
Sbjct 130 TLFERLFSSGTLTIESAGERGQLSLTSVPDVEQVHLRLYELGEDLQG 176
>gi|330465765|ref|YP_004403508.1| membrane-flanked domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328808736|gb|AEB42908.1| membrane-flanked domain protein [Verrucosispora maris AB-18-032]
Length=185
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/162 (40%), Positives = 88/162 (55%), Gaps = 5/162 (3%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M++PE+VL E VVLH PHW LI PV VLVL G F+ S I
Sbjct 1 MAFPEDVLTEDEHVVLHLRPHWKALIRPVAVLVLAIAAVVVGLVFLPSGGGGSITL---- 56
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
AVI G+ ++ V L +WP++ W TTH++ TN RV+ +HGV +R DIPL+R+N
Sbjct 57 AVIGGLAVLAVLVLGVWPYIVWRTTHYLFTNERVVLQHGVFSRERRDIPLSRVNDHSMNQ 116
Query 121 RIFERIFRTGTLIIESASQDPLEFY-NIPRLREVHALLYHEV 161
+ R+ GTL IESA + ++P++ V LY V
Sbjct 117 QFVGRLLGYGTLTIESAGERGQSVLPDVPKVDRVQTKLYELV 158
>gi|302865354|ref|YP_003833991.1| membrane-flanked domain [Micromonospora aurantiaca ATCC 27029]
gi|315501898|ref|YP_004080785.1| membrane-flanked domain-containing protein [Micromonospora sp.
L5]
gi|302568213|gb|ADL44415.1| membrane-flanked domain [Micromonospora aurantiaca ATCC 27029]
gi|315408517|gb|ADU06634.1| membrane-flanked domain protein [Micromonospora sp. L5]
Length=189
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/175 (42%), Positives = 95/175 (55%), Gaps = 10/175 (5%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M++PE+VL E VVLH HPHW LI PV+VLVL G + IA I
Sbjct 1 MAFPEDVLTEDEHVVLHLHPHWKALIRPVLVLVLAVAAVVAGWLLLPDGSGGTIALYAIA 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
V G+ LV+ WL LWPFL W TTH++ TN RV+ + GVL+R+ D+PL RIN
Sbjct 61 VV--GLALVL--WLGLWPFLVWRTTHYLFTNERVLLQQGVLSRNRRDLPLTRINDHAMHQ 116
Query 121 RIFERIFRTGTLIIESASQDPLE-FYNIPRLREVHALLY-----HEVFDTLGSDE 169
R ER+ GTL IESA + +++P + +V LY H +LG E
Sbjct 117 RFVERLLGCGTLTIESAGERGQSVLHDVPGVDKVQTKLYELVEAHHDKHSLGDGE 171
>gi|340358465|ref|ZP_08680983.1| hypothetical protein HMPREF9062_0108 [Actinomyces sp. oral taxon
448 str. F0400]
gi|339886474|gb|EGQ76126.1| hypothetical protein HMPREF9062_0108 [Actinomyces sp. oral taxon
448 str. F0400]
Length=170
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/174 (35%), Positives = 102/174 (59%), Gaps = 13/174 (7%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNST--PWQQIAKNV 58
M+ + +L+ E VV H H H L+W +V+ ++L LA S V + PW +A
Sbjct 1 MALSKKLLSRDEVVVRHMHTHIKVLLWRIVLEIVLLVLAVVCSVAVPDSWNPWGVVA--- 57
Query 59 IHAVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEF 118
IW + L++ L + P LSW++T + VT++RV+ R G++ +SG D+PL+RI+ V+
Sbjct 58 ----IWAVILLVSIPLFVAPCLSWMSTTYTVTSKRVITRSGIINKSGHDLPLSRISDVQH 113
Query 119 RDRIFERIFRTGTLIIESASQDPLEFYNIPRLR----EVHALLYHEVFDTLGSD 168
+R FR GTL ++++S DPLE ++PR+ E+ LL+++V + +D
Sbjct 114 DRDFTDRFFRCGTLRLQTSSDDPLELTDVPRVEMVQTEISNLLFNDVQGAVDAD 167
>gi|324998343|ref|ZP_08119455.1| membrane-flanked domain-containing protein [Pseudonocardia sp.
P1]
Length=208
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/161 (37%), Positives = 88/161 (55%), Gaps = 5/161 (3%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M++P++ L E++VLH PHW +WP VLVLLT LA FG+ V W A
Sbjct 1 MAFPDDALDDDERLVLHGRPHWRLCLWPAAVLVLLTALAGFGAAVVRLQTW---APYAWA 57
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
+ L + W L P L W +H VVTN R + R GV+ R G+D+P+ RI++V R
Sbjct 58 LLAAVAALAALRWSVL-PILRWRCSHLVVTNHRFLVREGVVGRDGLDVPVDRIDAVRVRS 116
Query 121 RIFERIFRTGTLIIESASQDPLEFYNIPRLREVHALLYHEV 161
+ R+ GTL+++ A + L F ++ + V A L+ E+
Sbjct 117 TVAGRVLGYGTLLLDVAGER-LRFADVSAVERVQARLHREI 156
>gi|336177081|ref|YP_004582456.1| hypothetical protein FsymDg_1031 [Frankia symbiont of Datisca
glomerata]
gi|334858061|gb|AEH08535.1| membrane-flanked domain DUF304 [Frankia symbiont of Datisca glomerata]
Length=176
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/160 (44%), Positives = 97/160 (61%), Gaps = 5/160 (3%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIH 60
M +P+N+L + EQVVLH HPHW RL P V V+L GL FG V + +QQ A+ +I
Sbjct 1 MGFPDNILTSDEQVVLHLHPHWIRLTGPAVAFVVLLGLTLFGVRAVPAGSFQQAAQWLIV 60
Query 61 AVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRD 120
A V++ + +L P+L W+TT +VVT RV+ R G+L+R G DIPL R++ V F
Sbjct 61 AA----GAVLLFFTSLRPWLRWVTTRYVVTTERVVVRAGILSRYGRDIPLLRLSDVSFSR 116
Query 121 RIFERIFRTGTLIIESASQ-DPLEFYNIPRLREVHALLYH 159
+E + +GTL I+S Q L N+P + EV+A LY
Sbjct 117 SFWEGLVGSGTLSIDSGGQRGRLVLVNLPHVEEVYATLYR 156
>gi|291298322|ref|YP_003509600.1| hypothetical protein Snas_0795 [Stackebrandtia nassauensis DSM
44728]
gi|290567542|gb|ADD40507.1| membrane-flanked domain protein [Stackebrandtia nassauensis DSM
44728]
Length=175
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/164 (40%), Positives = 101/164 (62%), Gaps = 7/164 (4%)
Query 1 MSYPENVLAAGEQVVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNST--PWQQIAKNV 58
M +P+N+LA E+VVLH HPHW LI PV ++ +A FG + W IA+ +
Sbjct 1 MGFPDNLLAEDEEVVLHMHPHWKELIGPVFWFIVFALVAVFGYTAIPDDWGSWVPIARWI 60
Query 59 IHAVIWGIWLVIVGWLTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEF 118
I A+ ++ + WL++ P++ W T+H+V T R++ R G+LTR G DIP AR+N V F
Sbjct 61 IVALA----VIAIIWLSITPWVVWGTSHYVFTTHRLLLRTGLLTRKGRDIPYARVNDVSF 116
Query 119 RDRIFERIFRTGTLIIESAS-QDPLEFYNIPRLREVHALLYHEV 161
+ +R+FR GTL+++SAS Q + F ++P++ V + LY V
Sbjct 117 EQGVIQRMFRLGTLMVQSASEQGAVVFKDMPKVEMVQSTLYKLV 160
>gi|333921487|ref|YP_004495068.1| hypothetical protein AS9A_3830 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483708|gb|AEF42268.1| Bacterial membrane flanked domain protein [Amycolicicoccus subflavus
DQS3-9A1]
Length=166
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/159 (34%), Positives = 88/159 (56%), Gaps = 4/159 (2%)
Query 14 VVLHRHPHWNRLIWPVVVLVLLTGLAAFGSGFVNSTPWQQIAKNVIHAVIWGIWLVIVGW 73
+++ RHPHW L+ P ++ T +A G + + I I V++ +WL+ V
Sbjct 1 MLMQRHPHWKMLLGPAAWMIAATAIAGALIGLIEVSAPSGIRGIAILFVVF-VWLLTVIT 59
Query 74 LTLWPFLSWLTTHFVVTNRRVMFRHGVLTRSGIDIPLARINSVEFRDRIFERIFRTGTLI 133
P++SW T ++T+ R+ R G+L+R G DIPL R+ V FR +R+ +TGTLI
Sbjct 60 KFFRPYVSWWRTVLIITDHRIAVREGLLSRRGFDIPLQRVAGVRFRCGFTDRLAKTGTLI 119
Query 134 IESASQDPLEFYNIPRLREVHALLYHEVFDTLGSDESPS 172
I + P EF ++P +R+ HA+LY +F G+ +P
Sbjct 120 ISPVGEPPFEFAHLPAVRDAHAVLYEHIF---GAGTAPK 155
Lambda K H
0.327 0.141 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 139975636738
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40