BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3286c
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610422|ref|NP_217803.1| RNA polymerase sigma factor SigF [M... 518 2e-145
gi|1276889|gb|AAC44103.1| stress response/stationary phase sigma... 517 5e-145
gi|289755409|ref|ZP_06514787.1| stress response/stationary phase... 517 6e-145
gi|240171602|ref|ZP_04750261.1| RNA polymerase sigma factor SigF... 468 3e-130
gi|118618107|ref|YP_906439.1| RNA polymerase sigma factor SigF [... 462 2e-128
gi|296168913|ref|ZP_06850582.1| RNA polymerase sigma-F factor [M... 452 2e-125
gi|41409504|ref|NP_962340.1| RNA polymerase sigma factor SigF [M... 447 9e-124
gi|254819525|ref|ZP_05224526.1| RNA polymerase sigma factor SigF... 434 6e-120
gi|108798252|ref|YP_638449.1| RNA polymerase sigma factor SigF [... 424 8e-117
gi|120402666|ref|YP_952495.1| RNA polymerase sigma factor SigF [... 420 1e-115
gi|315445714|ref|YP_004078593.1| RNA polymerase sigma factor, si... 419 3e-115
gi|118470482|ref|YP_886176.1| RNA polymerase sigma factor SigF [... 419 3e-115
gi|145225367|ref|YP_001136045.1| RNA polymerase sigma factor Sig... 418 4e-115
gi|333991745|ref|YP_004524359.1| RNA polymerase sigma factor Sig... 415 4e-114
gi|336459631|gb|EGO38566.1| RNA polymerase sigma factor, sigma-7... 412 2e-113
gi|118464372|ref|YP_883398.1| RNA polymerase sigma factor SigF [... 409 3e-112
gi|342861501|ref|ZP_08718148.1| RNA polymerase sigma factor SigF... 391 4e-107
gi|226361251|ref|YP_002779029.1| RNA polymerase sigma factor Sig... 330 1e-88
gi|111019111|ref|YP_702083.1| RNA polymerase sigma factor SigF [... 328 4e-88
gi|229490177|ref|ZP_04384024.1| RNA polymerase sigma-F factor [R... 325 3e-87
gi|226305067|ref|YP_002765025.1| RNA polymerase sigma factor Sig... 325 6e-87
gi|315444787|ref|YP_004077666.1| RNA polymerase sigma factor, si... 306 2e-81
gi|145224454|ref|YP_001135132.1| FliA/WhiG family RNA polymerase... 306 2e-81
gi|257056691|ref|YP_003134523.1| RNA polymerase sigma factor, si... 302 3e-80
gi|256379368|ref|YP_003103028.1| SigB/F/G subfamily RNA polymera... 301 5e-80
gi|257054261|ref|YP_003132093.1| RNA polymerase sigma factor, si... 294 1e-77
gi|300787087|ref|YP_003767378.1| RNA polymerase sigma factor [Am... 293 1e-77
gi|325674546|ref|ZP_08154234.1| RNA polymerase sigma-F factor [R... 291 7e-77
gi|312139980|ref|YP_004007316.1| sigma-70 factor sigf [Rhodococc... 290 1e-76
gi|54025575|ref|YP_119817.1| putative sigma factor [Nocardia far... 289 3e-76
gi|108799863|ref|YP_640060.1| RNA polymerase sigma factor SigF [... 289 3e-76
gi|41407572|ref|NP_960408.1| RNA polymerase sigma factor SigF [M... 288 5e-76
gi|315444786|ref|YP_004077665.1| RNA polymerase sigma factor, si... 288 6e-76
gi|118465934|ref|YP_882149.1| RNA polymerase sigma factor SigF [... 288 6e-76
gi|145224453|ref|YP_001135131.1| FliA/WhiG family RNA polymerase... 288 8e-76
gi|342861346|ref|ZP_08717994.1| RNA polymerase sigma factor SigF... 286 2e-75
gi|120403519|ref|YP_953348.1| FliA/WhiG family RNA polymerase si... 285 3e-75
gi|169629597|ref|YP_001703246.1| RNA polymerase sigma factor Sig... 284 1e-74
gi|229492301|ref|ZP_04386108.1| RNA polymerase sigma-F factor [R... 282 3e-74
gi|226304764|ref|YP_002764722.1| RNA polymerase sigma factor [Rh... 280 1e-73
gi|302527791|ref|ZP_07280133.1| RNA polymerase sigma-F factor [S... 280 2e-73
gi|262204122|ref|YP_003275330.1| RNA polymerase sigma-70 factor,... 278 4e-73
gi|254775435|ref|ZP_05216951.1| RNA polymerase sigma factor SigF... 278 5e-73
gi|302528260|ref|ZP_07280602.1| RNA polymerase sigma-B factor [S... 277 1e-72
gi|296164736|ref|ZP_06847300.1| RNA polymerase sigma-F factor [M... 275 6e-72
gi|226359630|ref|YP_002777408.1| RNA polymerase sigma factor [Rh... 274 8e-72
gi|254818833|ref|ZP_05223834.1| RNA polymerase sigma factor SigF... 274 8e-72
gi|111017120|ref|YP_700092.1| sigma factor, sigma 70 type, group... 273 2e-71
gi|345009233|ref|YP_004811587.1| Sig B/F/G subfamily RNA polymer... 271 6e-71
gi|291454068|ref|ZP_06593458.1| RNA polymerase sigma factor [Str... 271 7e-71
>gi|15610422|ref|NP_217803.1| RNA polymerase sigma factor SigF [Mycobacterium tuberculosis
H37Rv]
gi|15842877|ref|NP_337914.1| RNA polymerase sigma factor SigF [Mycobacterium tuberculosis
CDC1551]
gi|31794466|ref|NP_856959.1| RNA polymerase sigma factor SigF [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=261
Score = 518 bits (1335), Expect = 2e-145, Method: Compositional matrix adjust.
Identities = 260/261 (99%), Positives = 261/261 (100%), Gaps = 0/261 (0%)
Query 1 VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
+TARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG
Sbjct 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
Query 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
Query 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD 180
KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD
Sbjct 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD 180
Query 181 DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI 240
DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI
Sbjct 181 DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI 240
Query 241 SQMHVSRLLAKSLARLRDQLE 261
SQMHVSRLLAKSLARLRDQLE
Sbjct 241 SQMHVSRLLAKSLARLRDQLE 261
>gi|1276889|gb|AAC44103.1| stress response/stationary phase sigma factor [Mycobacterium
tuberculosis H37Rv]
gi|1589717|prf||2211432A RNA polymerase sigma factor
Length=261
Score = 517 bits (1332), Expect = 5e-145, Method: Compositional matrix adjust.
Identities = 259/261 (99%), Positives = 261/261 (100%), Gaps = 0/261 (0%)
Query 1 VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
+TARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG
Sbjct 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
Query 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
Query 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD 180
KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD
Sbjct 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD 180
Query 181 DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI 240
DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI
Sbjct 181 DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI 240
Query 241 SQMHVSRLLAKSLARLRDQLE 261
SQMHVSR+LAKSLARLRDQLE
Sbjct 241 SQMHVSRVLAKSLARLRDQLE 261
>gi|289755409|ref|ZP_06514787.1| stress response/stationary phase sigma factor SigF [Mycobacterium
tuberculosis EAS054]
gi|289695996|gb|EFD63425.1| stress response/stationary phase sigma factor SigF [Mycobacterium
tuberculosis EAS054]
Length=261
Score = 517 bits (1332), Expect = 6e-145, Method: Compositional matrix adjust.
Identities = 259/261 (99%), Positives = 261/261 (100%), Gaps = 0/261 (0%)
Query 1 VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
+TARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG
Sbjct 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
Query 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
RGEPRDDLIQVARVGLVNAAVRFD+KTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct 61 RGEPRDDLIQVARVGLVNAAVRFDMKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
Query 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD 180
KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD
Sbjct 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD 180
Query 181 DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI 240
DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI
Sbjct 181 DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI 240
Query 241 SQMHVSRLLAKSLARLRDQLE 261
SQMHVSRLLAKSLARLRDQLE
Sbjct 241 SQMHVSRLLAKSLARLRDQLE 261
>gi|240171602|ref|ZP_04750261.1| RNA polymerase sigma factor SigF [Mycobacterium kansasii ATCC
12478]
Length=262
Score = 468 bits (1205), Expect = 3e-130, Method: Compositional matrix adjust.
Identities = 234/262 (90%), Positives = 250/262 (96%), Gaps = 1/262 (0%)
Query 1 VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
+T RAAGGSASR NEYADVPEMFREL G SP+FQRHRDKIV+RCLPLADHIARRFEG
Sbjct 1 MTPRAAGGSASRPNEYADVPEMFRELAGFDPDSPDFQRHRDKIVERCLPLADHIARRFEG 60
Query 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
RGEPRDDLIQVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct 61 RGEPRDDLIQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
Query 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS- 179
KELHLRLGTATA+LSQRLGRAP+A+ELAAELGMDR EV+EGL+AGSSY+TLSIDSGGG+
Sbjct 121 KELHLRLGTATAELSQRLGRAPTATELAAELGMDRGEVVEGLVAGSSYNTLSIDSGGGNE 180
Query 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239
DDDARAI DTLGD+DAGLD+IE+RE LRPLLEALPERERTVL+LRFF+SMTQTQIAERVG
Sbjct 181 DDDARAIADTLGDMDAGLDRIEDRESLRPLLEALPERERTVLILRFFESMTQTQIAERVG 240
Query 240 ISQMHVSRLLAKSLARLRDQLE 261
ISQMHVSRLLAKSLARLRDQLE
Sbjct 241 ISQMHVSRLLAKSLARLRDQLE 262
>gi|118618107|ref|YP_906439.1| RNA polymerase sigma factor SigF [Mycobacterium ulcerans Agy99]
gi|183981270|ref|YP_001849561.1| alternate RNA polymerase sigma factor SigF [Mycobacterium marinum
M]
gi|118570217|gb|ABL04968.1| alternate RNA polymerase sigma factor SigF [Mycobacterium ulcerans
Agy99]
gi|183174596|gb|ACC39706.1| alternate RNA polymerase sigma factor SigF [Mycobacterium marinum
M]
Length=262
Score = 462 bits (1189), Expect = 2e-128, Method: Compositional matrix adjust.
Identities = 231/262 (89%), Positives = 246/262 (94%), Gaps = 1/262 (0%)
Query 1 VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
+T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG
Sbjct 1 MTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60
Query 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
Query 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS- 179
KELHLRLG ATA+LSQRLGRAP+A+ELAAEL MDRAEV+EGL+AGSSY+TLSIDSG GS
Sbjct 121 KELHLRLGAATAELSQRLGRAPTATELAAELEMDRAEVVEGLVAGSSYNTLSIDSGSGSE 180
Query 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239
DDDARAI DTLGD+DAGLD+IE+RE LRPLLEALPERERTVLVLRFFDSMTQTQIAERVG
Sbjct 181 DDDARAIADTLGDMDAGLDRIEDRESLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 240
Query 240 ISQMHVSRLLAKSLARLRDQLE 261
ISQMHVSRLLAKSLARLRDQLE
Sbjct 241 ISQMHVSRLLAKSLARLRDQLE 262
>gi|296168913|ref|ZP_06850582.1| RNA polymerase sigma-F factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896382|gb|EFG76035.1| RNA polymerase sigma-F factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=262
Score = 452 bits (1163), Expect = 2e-125, Method: Compositional matrix adjust.
Identities = 227/262 (87%), Positives = 244/262 (94%), Gaps = 1/262 (0%)
Query 1 VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
+T AAGGS SR NEYADVP+MFREL + AGS EFQR RDKIV+RCLPLADHIARRFEG
Sbjct 1 MTPPAAGGSVSRPNEYADVPDMFRELATVGAGSMEFQRQRDKIVERCLPLADHIARRFEG 60
Query 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
RGEPRDDL+QVARVGLVNA VRFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct 61 RGEPRDDLVQVARVGLVNAVVRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
Query 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD 180
KELHLRLGTATA+LSQRLGRAP+A+ELAAELGMDR EV+EGL+AGSSY+TLSIDSGGGSD
Sbjct 121 KELHLRLGTATAELSQRLGRAPTATELAAELGMDREEVVEGLVAGSSYNTLSIDSGGGSD 180
Query 181 -DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239
D+ARAI DTLGDVD GLD+IE++E LRPLLEALPERERTVLVLRFF+SMTQTQIAERVG
Sbjct 181 EDEARAIADTLGDVDTGLDRIEDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVG 240
Query 240 ISQMHVSRLLAKSLARLRDQLE 261
ISQMHVSRLLAKSL RLRDQL+
Sbjct 241 ISQMHVSRLLAKSLTRLRDQLQ 262
>gi|41409504|ref|NP_962340.1| RNA polymerase sigma factor SigF [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|254776692|ref|ZP_05218208.1| RNA polymerase sigma factor SigF [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41398335|gb|AAS05956.1| SigF_2 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=262
Score = 447 bits (1149), Expect = 9e-124, Method: Compositional matrix adjust.
Identities = 224/262 (86%), Positives = 241/262 (92%), Gaps = 1/262 (0%)
Query 1 VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
+TARAAGGS SR NEYADVP+MFREL S EFQR RDKIV+RCLPLADHIARRFEG
Sbjct 1 MTARAAGGSVSRPNEYADVPDMFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEG 60
Query 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
RGEPRDDL+QVARVGLVNA VRFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct 61 RGEPRDDLVQVARVGLVNAVVRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
Query 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS- 179
KELHLRLGTATADLSQRLGRAP+A+ELAAEL MDR EV+EGL+AGSSY+TLSIDSGGGS
Sbjct 121 KELHLRLGTATADLSQRLGRAPTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSE 180
Query 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239
+++ RAI DTLGDVD GLD+IE++E LRPLLEALPERERTVLVLRFF+SMTQTQIAERVG
Sbjct 181 EEEVRAIADTLGDVDTGLDRIEDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVG 240
Query 240 ISQMHVSRLLAKSLARLRDQLE 261
ISQMHVSRLLAKSL RLRDQL+
Sbjct 241 ISQMHVSRLLAKSLTRLRDQLQ 262
>gi|254819525|ref|ZP_05224526.1| RNA polymerase sigma factor SigF [Mycobacterium intracellulare
ATCC 13950]
Length=262
Score = 434 bits (1116), Expect = 6e-120, Method: Compositional matrix adjust.
Identities = 223/262 (86%), Positives = 241/262 (92%), Gaps = 1/262 (0%)
Query 1 VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
+T RAAGGS SR NEYADVP+MFREL + A S E QR RDKIV+RCLPLADHIARRFEG
Sbjct 1 MTPRAAGGSVSRPNEYADVPDMFRELASVAADSMELQRQRDKIVERCLPLADHIARRFEG 60
Query 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
RGEPRDDL+QVARVGLVNA VRFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct 61 RGEPRDDLVQVARVGLVNAVVRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
Query 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDS-GGGS 179
KELHLRLGTATADLSQRLGRAP+A+ELAAEL MDR EV+EGL+AGSSY+TLSIDS GGG
Sbjct 121 KELHLRLGTATADLSQRLGRAPTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGGE 180
Query 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239
+++ARAI DTLGDVD GLD+IE++E LRPLLEALPERERTVLVLRFF+SMTQTQIAERVG
Sbjct 181 EEEARAIADTLGDVDTGLDRIEDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVG 240
Query 240 ISQMHVSRLLAKSLARLRDQLE 261
ISQMHVSRLLAKSL RLRDQL+
Sbjct 241 ISQMHVSRLLAKSLTRLRDQLQ 262
>gi|108798252|ref|YP_638449.1| RNA polymerase sigma factor SigF [Mycobacterium sp. MCS]
gi|119867348|ref|YP_937300.1| RNA polymerase sigma factor SigF [Mycobacterium sp. KMS]
gi|126433912|ref|YP_001069603.1| RNA polymerase sigma factor SigF [Mycobacterium sp. JLS]
gi|108768671|gb|ABG07393.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119693437|gb|ABL90510.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium
sp. KMS]
gi|126233712|gb|ABN97112.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium
sp. JLS]
Length=263
Score = 424 bits (1089), Expect = 8e-117, Method: Compositional matrix adjust.
Identities = 212/263 (81%), Positives = 236/263 (90%), Gaps = 2/263 (0%)
Query 1 VTARAAGGSASRAN-EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFE 59
+T +A GS+ R N EY+DV MFREL GL +P+FQR RD+IV+RCLPLADHIARRF+
Sbjct 1 MTPSSAQGSSPRQNSEYSDVAPMFRELQGLTPSTPQFQRQRDRIVERCLPLADHIARRFD 60
Query 60 GRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR 119
GRGEPRDDL+QVARVGLVNA +RFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR
Sbjct 61 GRGEPRDDLVQVARVGLVNAVIRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR 120
Query 120 LKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS 179
LKELHLRLG+ATA+LSQRLGRAP+ASELA ELGMDR EV+EGL+AGSSY+TLSIDSGG S
Sbjct 121 LKELHLRLGSATAELSQRLGRAPTASELAEELGMDRDEVVEGLVAGSSYNTLSIDSGGNS 180
Query 180 -DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERV 238
++DA AI DTLGDVD GLDQIENRE LRPLL ALPERER VL+LRFF+++TQTQIAERV
Sbjct 181 GNEDAPAIADTLGDVDLGLDQIENREALRPLLAALPERERMVLLLRFFENLTQTQIAERV 240
Query 239 GISQMHVSRLLAKSLARLRDQLE 261
GISQMHVSRLLAKSL RLRDQL+
Sbjct 241 GISQMHVSRLLAKSLTRLRDQLQ 263
>gi|120402666|ref|YP_952495.1| RNA polymerase sigma factor SigF [Mycobacterium vanbaalenii PYR-1]
gi|119955484|gb|ABM12489.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium
vanbaalenii PYR-1]
Length=262
Score = 420 bits (1079), Expect = 1e-115, Method: Compositional matrix adjust.
Identities = 208/247 (85%), Positives = 223/247 (91%), Gaps = 0/247 (0%)
Query 15 EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARV 74
EYADV MFREL L G+ FQR RD+IV+RCLPLADHIARRF+GRGEPRDDL+QVARV
Sbjct 16 EYADVAPMFRELAELEEGTAAFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVARV 75
Query 75 GLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADL 134
GLVNA +RFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+L
Sbjct 76 GLVNAVIRFDVNAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 135
Query 135 SQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVD 194
SQRLGRAP+A+ELAAEL MDR EV+EGL+AGSSY+TLSIDSGG ++DA AI DTLGDVD
Sbjct 136 SQRLGRAPTATELAAELEMDRDEVVEGLVAGSSYNTLSIDSGGSGNEDAPAIADTLGDVD 195
Query 195 AGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLA 254
LDQIENRE LRPLL ALPERERTVL LRFF+SMTQTQIAERVGISQMHVSRLLAKSLA
Sbjct 196 LSLDQIENREALRPLLAALPERERTVLALRFFESMTQTQIAERVGISQMHVSRLLAKSLA 255
Query 255 RLRDQLE 261
RLRDQLE
Sbjct 256 RLRDQLE 262
>gi|315445714|ref|YP_004078593.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
gi|315264017|gb|ADU00759.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
Length=262
Score = 419 bits (1076), Expect = 3e-115, Method: Compositional matrix adjust.
Identities = 210/248 (85%), Positives = 225/248 (91%), Gaps = 1/248 (0%)
Query 15 EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARV 74
EY+DV +MFREL L GS FQR RD+IV+RCLPLADHIARRF+GRGEPRDDL+QVARV
Sbjct 15 EYSDVADMFRELAELEEGSAAFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVARV 74
Query 75 GLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADL 134
GLVNA +RFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+L
Sbjct 75 GLVNAVIRFDVNAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 134
Query 135 SQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAITDTLGDV 193
SQRLGRAP+ SELAAEL MDR EV+EGL+AGSSY+TLSIDSGGGS ++DA AI DTLGDV
Sbjct 135 SQRLGRAPTPSELAAELEMDRDEVVEGLVAGSSYNTLSIDSGGGSGNEDAPAIADTLGDV 194
Query 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253
D LDQIENRE LRPLL ALPERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKSL
Sbjct 195 DLTLDQIENREALRPLLAALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSL 254
Query 254 ARLRDQLE 261
RLRDQLE
Sbjct 255 TRLRDQLE 262
>gi|118470482|ref|YP_886176.1| RNA polymerase sigma factor SigF [Mycobacterium smegmatis str.
MC2 155]
gi|25396413|dbj|BAC24795.1| alternative sigma factor SigF [Mycobacterium smegmatis]
gi|118171769|gb|ABK72665.1| RNA polymerase sigma-F factor [Mycobacterium smegmatis str. MC2
155]
Length=250
Score = 419 bits (1076), Expect = 3e-115, Method: Compositional matrix adjust.
Identities = 206/249 (83%), Positives = 227/249 (92%), Gaps = 0/249 (0%)
Query 13 ANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVA 72
+EYADV +MFREL G GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVA
Sbjct 2 TSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVA 61
Query 73 RVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATA 132
RVGLVNA RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA
Sbjct 62 RVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATA 121
Query 133 DLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGD 192
+LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD
Sbjct 122 ELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGD 181
Query 193 VDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKS 252
+D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKS
Sbjct 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKS 241
Query 253 LARLRDQLE 261
LARLRDQL+
Sbjct 242 LARLRDQLQ 250
>gi|145225367|ref|YP_001136045.1| RNA polymerase sigma factor SigF [Mycobacterium gilvum PYR-GCK]
gi|145217853|gb|ABP47257.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium
gilvum PYR-GCK]
Length=262
Score = 418 bits (1075), Expect = 4e-115, Method: Compositional matrix adjust.
Identities = 210/248 (85%), Positives = 225/248 (91%), Gaps = 1/248 (0%)
Query 15 EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARV 74
EY+DV +MFREL L GS FQR RD+IV+RCLPLADHIARRF+GRGEPRDDL+QVARV
Sbjct 15 EYSDVADMFRELAELEEGSAAFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVARV 74
Query 75 GLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADL 134
GLVNA +RFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+L
Sbjct 75 GLVNAVIRFDVTAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 134
Query 135 SQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAITDTLGDV 193
SQRLGRAP+ SELAAEL MDR EV+EGL+AGSSY+TLSIDSGGGS ++DA AI DTLGDV
Sbjct 135 SQRLGRAPTPSELAAELEMDRDEVVEGLVAGSSYNTLSIDSGGGSGNEDAPAIADTLGDV 194
Query 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253
D LDQIENRE LRPLL ALPERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKSL
Sbjct 195 DLTLDQIENREALRPLLAALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSL 254
Query 254 ARLRDQLE 261
RLRDQLE
Sbjct 255 TRLRDQLE 262
>gi|333991745|ref|YP_004524359.1| RNA polymerase sigma factor SigF [Mycobacterium sp. JDM601]
gi|333487713|gb|AEF37105.1| alternative RNA polymerase sigma factor SigF [Mycobacterium sp.
JDM601]
Length=262
Score = 415 bits (1066), Expect = 4e-114, Method: Compositional matrix adjust.
Identities = 206/262 (79%), Positives = 233/262 (89%), Gaps = 1/262 (0%)
Query 1 VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
+T AA + +EY+DV +MFREL +GS +F+ +DKIV+RCLPLADHIARRFEG
Sbjct 1 MTRGAARSGSQSGSEYSDVGDMFRELAHYESGSTDFRNRKDKIVERCLPLADHIARRFEG 60
Query 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
RGE RDDL+QVARVGLVNA RFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct 61 RGELRDDLVQVARVGLVNAVTRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
Query 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD 180
KELHLRLG+ATADLSQRLGRAP+A+ELA EL M R EV+EGL+AGSSY+TLSIDSGG SD
Sbjct 121 KELHLRLGSATADLSQRLGRAPTATELARELEMSREEVVEGLVAGSSYNTLSIDSGGSSD 180
Query 181 -DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239
DD R+I DTLGD+DAG+D+IE+RE LRPLL ALPERERTVL+LRFF+SMTQTQIAERVG
Sbjct 181 EDDVRSIADTLGDIDAGMDRIEDREALRPLLNALPERERTVLLLRFFESMTQTQIAERVG 240
Query 240 ISQMHVSRLLAKSLARLRDQLE 261
ISQMHVSRLLAKSL++LRDQLE
Sbjct 241 ISQMHVSRLLAKSLSKLRDQLE 262
>gi|336459631|gb|EGO38566.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length=241
Score = 412 bits (1060), Expect = 2e-113, Method: Compositional matrix adjust.
Identities = 207/241 (86%), Positives = 222/241 (93%), Gaps = 1/241 (0%)
Query 22 MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV 81
MFREL S EFQR RDKIV+RCLPLADHIARRFEGRGEPRDDL+QVARVGLVNA V
Sbjct 1 MFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVV 60
Query 82 RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 141
RFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA
Sbjct 61 RFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 120
Query 142 PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAITDTLGDVDAGLDQI 200
P+A+ELAAEL MDR EV+EGL+AGSSY+TLSIDSGGGS +++ RAI DTLGDVD GLD+I
Sbjct 121 PTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSEEEEVRAIADTLGDVDTGLDRI 180
Query 201 ENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL 260
E++E LRPLLEALPERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKSL RLRDQL
Sbjct 181 EDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLTRLRDQL 240
Query 261 E 261
+
Sbjct 241 Q 241
>gi|118464372|ref|YP_883398.1| RNA polymerase sigma factor SigF [Mycobacterium avium 104]
gi|118165659|gb|ABK66556.1| RNA polymerase sigma-F factor [Mycobacterium avium 104]
Length=241
Score = 409 bits (1050), Expect = 3e-112, Method: Compositional matrix adjust.
Identities = 206/241 (86%), Positives = 221/241 (92%), Gaps = 1/241 (0%)
Query 22 MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV 81
MFREL S EFQR RDKIV+RCLPLADHIARRFEGRGEPRDDL+QVARVGLVNA V
Sbjct 1 MFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVV 60
Query 82 RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 141
RFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA
Sbjct 61 RFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 120
Query 142 PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAITDTLGDVDAGLDQI 200
+A+ELAAEL MDR EV+EGL+AGSSY+TLSIDSGGGS +++ RAI DTLGDVD GLD+I
Sbjct 121 HTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSEEEEVRAIADTLGDVDTGLDRI 180
Query 201 ENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL 260
E++E LRPLLEALPERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKSL RLRDQL
Sbjct 181 EDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLTRLRDQL 240
Query 261 E 261
+
Sbjct 241 Q 241
>gi|342861501|ref|ZP_08718148.1| RNA polymerase sigma factor SigF [Mycobacterium colombiense CECT
3035]
gi|342130990|gb|EGT84279.1| RNA polymerase sigma factor SigF [Mycobacterium colombiense CECT
3035]
Length=229
Score = 391 bits (1005), Expect = 4e-107, Method: Compositional matrix adjust.
Identities = 201/228 (89%), Positives = 216/228 (95%), Gaps = 1/228 (0%)
Query 35 EFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSF 94
EFQR RDKIV+RCLPLADHIARRFEGRGEPRDDL+QVARVGLVNA VRFDV GSDFVSF
Sbjct 2 EFQRQRDKIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVVRFDVDAGSDFVSF 61
Query 95 AVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAPSASELAAELGMD 154
AVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAP+A+ELAAEL MD
Sbjct 62 AVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAPTATELAAELDMD 121
Query 155 RAEVIEGLLAGSSYHTLSIDS-GGGSDDDARAITDTLGDVDAGLDQIENREVLRPLLEAL 213
R EV+EGL+AGSSY+TLSIDS GGG +++ARAI DTLGDVD GLD+IE++E LRPLLEAL
Sbjct 122 RDEVVEGLVAGSSYNTLSIDSGGGGEEEEARAIADTLGDVDTGLDRIEDQESLRPLLEAL 181
Query 214 PERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQLE 261
PERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKSL RLRDQL+
Sbjct 182 PERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLTRLRDQLQ 229
>gi|226361251|ref|YP_002779029.1| RNA polymerase sigma factor SigF [Rhodococcus opacus B4]
gi|226239736|dbj|BAH50084.1| RNA polymerase sigma factor SigF [Rhodococcus opacus B4]
Length=265
Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/256 (63%), Positives = 199/256 (78%), Gaps = 0/256 (0%)
Query 5 AAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEP 64
+ G +A +EY DV +FR++ L P R RD +V RCLPLA+HIARRF+GRGE
Sbjct 7 SGGHTARWPDEYQDVTALFRQMAALDEDDPRRSRLRDAVVTRCLPLAEHIARRFDGRGEA 66
Query 65 RDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELH 124
DDL+QVAR+GLVN+ RFDV+ GSDFVSFAVPTIMGEVRRHFRD W+V+VPRR+KELH
Sbjct 67 HDDLVQVARLGLVNSVDRFDVERGSDFVSFAVPTIMGEVRRHFRDTGWAVRVPRRMKELH 126
Query 125 LRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDAR 184
L L A A+LSQ LG AP+ SELA L +++ EV +GLLAG++Y T+S+D+
Sbjct 127 LALSQAVAELSQSLGHAPTVSELAEHLDLEQEEVAQGLLAGNAYQTVSVDNTSSDRAGEL 186
Query 185 AITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMH 244
++ +TLGD DA +D +EN E LRPLL++LPERERTVL+LRFF +MTQTQIA+RVGISQMH
Sbjct 187 SMVETLGDYDAAMDDVENHETLRPLLQSLPERERTVLMLRFFGNMTQTQIADRVGISQMH 246
Query 245 VSRLLAKSLARLRDQL 260
VSRLLAK+LA LRDQL
Sbjct 247 VSRLLAKTLASLRDQL 262
>gi|111019111|ref|YP_702083.1| RNA polymerase sigma factor SigF [Rhodococcus jostii RHA1]
gi|110818641|gb|ABG93925.1| sigma factor, sigma 70 type, group 3 [Rhodococcus jostii RHA1]
Length=265
Score = 328 bits (842), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 160/256 (63%), Positives = 198/256 (78%), Gaps = 0/256 (0%)
Query 5 AAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEP 64
+ G +A +EY DV +F ++ L P R RD +V RCLPLA+HIARRF+GRGE
Sbjct 7 SGGHTARWPDEYQDVTALFEQMAALDEDDPRRSRLRDAVVTRCLPLAEHIARRFDGRGEA 66
Query 65 RDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELH 124
DDL+QVAR+GLVN+ RFDV+ GSDFVSFAVPTIMGEVRRHFRD W+V+VPRR+KELH
Sbjct 67 HDDLVQVARLGLVNSVDRFDVERGSDFVSFAVPTIMGEVRRHFRDTGWAVRVPRRMKELH 126
Query 125 LRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDAR 184
L L A A+LSQ LG AP+ SELA L +++ EV +GLLAG++Y T+S+D+
Sbjct 127 LALSQAVAELSQSLGHAPTVSELAEHLDLEQEEVAQGLLAGNAYQTVSVDNTSSDRTGEL 186
Query 185 AITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMH 244
++ +TLGD DA +D +EN E LRPLL++LPERERTVL+LRFF +MTQTQIA+RVGISQMH
Sbjct 187 SMVETLGDYDAAMDDVENHETLRPLLQSLPERERTVLMLRFFGNMTQTQIADRVGISQMH 246
Query 245 VSRLLAKSLARLRDQL 260
VSRLLAK+LA LRDQL
Sbjct 247 VSRLLAKTLASLRDQL 262
>gi|229490177|ref|ZP_04384024.1| RNA polymerase sigma-F factor [Rhodococcus erythropolis SK121]
gi|229322925|gb|EEN88699.1| RNA polymerase sigma-F factor [Rhodococcus erythropolis SK121]
Length=264
Score = 325 bits (834), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 159/264 (61%), Positives = 203/264 (77%), Gaps = 3/264 (1%)
Query 1 VTARAAGGSASR---ANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARR 57
+TA A G S R +EY DV +F EL L SPE++R R ++ RCLPLA+HIARR
Sbjct 1 MTASADGPSRPRRRSTDEYRDVIPVFEELRTLEPHSPEYERVRTALITRCLPLAEHIARR 60
Query 58 FEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVP 117
F+GRGE DDL+QVAR+GLVNA RFD GSDFVSFAVPT+MGEVRRHFRD W+++VP
Sbjct 61 FDGRGEAHDDLVQVARLGLVNAVDRFDSTRGSDFVSFAVPTVMGEVRRHFRDTGWALRVP 120
Query 118 RRLKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGG 177
RR+KELH +LG A ++LSQ+LG AP+ ELA LG++R EV + L+AG++Y T+S+D
Sbjct 121 RRMKELHFQLGQAISELSQQLGHAPTVDELAETLGIEREEVAQALIAGNAYQTVSVDGAA 180
Query 178 GSDDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAER 237
+ D + +TLGD DA L+ +EN E LRPLL+ LPERERTVL+LRFF ++TQTQIAE+
Sbjct 181 SNHTDDLPLVETLGDYDAALENVENHEALRPLLDKLPERERTVLMLRFFGNLTQTQIAEK 240
Query 238 VGISQMHVSRLLAKSLARLRDQLE 261
VG+SQMHVSRLLAK+L+ LR+QL+
Sbjct 241 VGVSQMHVSRLLAKTLSNLREQLD 264
>gi|226305067|ref|YP_002765025.1| RNA polymerase sigma factor SigF [Rhodococcus erythropolis PR4]
gi|226184182|dbj|BAH32286.1| RNA polymerase sigma factor SigF [Rhodococcus erythropolis PR4]
Length=264
Score = 325 bits (832), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 158/264 (60%), Positives = 203/264 (77%), Gaps = 3/264 (1%)
Query 1 VTARAAGGSASR---ANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARR 57
+TA A G S R +EY DV +F E+ L SPE++R R ++ RCLPLA+HIARR
Sbjct 1 MTASADGPSRPRRRSTDEYRDVIPVFEEMRTLEPHSPEYERVRTALITRCLPLAEHIARR 60
Query 58 FEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVP 117
F+GRGE DDL+QVAR+GLVNA RFD GSDFVSFAVPT+MGEVRRHFRD W+++VP
Sbjct 61 FDGRGEAHDDLVQVARLGLVNAVDRFDSTRGSDFVSFAVPTVMGEVRRHFRDTGWALRVP 120
Query 118 RRLKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGG 177
RR+KELH +LG A ++LSQ+LG AP+ ELA LG++R EV + L+AG++Y T+S+D
Sbjct 121 RRMKELHFQLGQAISELSQQLGHAPTVDELAETLGIEREEVAQALIAGNAYQTVSVDGAA 180
Query 178 GSDDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAER 237
+ D + +TLGD DA L+ +EN E LRPLL+ LPERERTVL+LRFF ++TQTQIAE+
Sbjct 181 SNHTDDLPLVETLGDYDAALENVENHEALRPLLDKLPERERTVLMLRFFGNLTQTQIAEK 240
Query 238 VGISQMHVSRLLAKSLARLRDQLE 261
VG+SQMHVSRLLAK+L+ LR+QL+
Sbjct 241 VGVSQMHVSRLLAKTLSNLREQLD 264
>gi|315444787|ref|YP_004077666.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
gi|315263090|gb|ADT99831.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
Length=270
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/245 (63%), Positives = 188/245 (77%), Gaps = 0/245 (0%)
Query 15 EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARV 74
EY+DVP M R L L SPE++R ++I+ LPLA H ARRF GRG+ DDL QVA V
Sbjct 7 EYSDVPNMIRALRQLDPASPEYRRLHERIIAMTLPLAQHTARRFRGRGQSHDDLFQVASV 66
Query 75 GLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADL 134
GLVNA RFD +GSDF+++AVPTIMGEVRR+FRD SW+VKVPRRLK+L+ +L A A+L
Sbjct 67 GLVNAVKRFDPDSGSDFLAYAVPTIMGEVRRYFRDCSWAVKVPRRLKDLNSQLAKARAEL 126
Query 135 SQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVD 194
+Q+LGRAP+ SE+AA LG+DR EV++ +A S+Y TLS DS G D D A+ +TLG+ D
Sbjct 127 TQQLGRAPTPSEVAAHLGIDREEVVQATIASSNYATLSTDSTSGPDGDFVALRETLGEPD 186
Query 195 AGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLA 254
A LD + + E +RPL+E LP RE+ VL LRFFD MTQTQIAER+G SQMHVSRLLAK+LA
Sbjct 187 ARLDAVVDNETIRPLIEKLPPREQAVLKLRFFDEMTQTQIAERMGYSQMHVSRLLAKALA 246
Query 255 RLRDQ 259
LRDQ
Sbjct 247 TLRDQ 251
>gi|145224454|ref|YP_001135132.1| FliA/WhiG family RNA polymerase sigma factor [Mycobacterium gilvum
PYR-GCK]
gi|145216940|gb|ABP46344.1| RNA polymerase, sigma 37 subunit, RpsB/SigB [Mycobacterium gilvum
PYR-GCK]
Length=270
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/245 (63%), Positives = 188/245 (77%), Gaps = 0/245 (0%)
Query 15 EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARV 74
EY+DVP M R L L SPE++R ++I+ LPLA H ARRF GRG+ DDL QVA V
Sbjct 7 EYSDVPNMIRALRQLDPASPEYRRLHERIIAMTLPLAQHTARRFRGRGQSHDDLFQVASV 66
Query 75 GLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADL 134
GLVNA RFD +GSDF+++AVPTIMGEVRR+FRD SW+VKVPRRLK+L+ +L A A+L
Sbjct 67 GLVNAVKRFDPDSGSDFLAYAVPTIMGEVRRYFRDCSWAVKVPRRLKDLNSQLAKARAEL 126
Query 135 SQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVD 194
+Q+LGRAP+ SE+AA LG+DR EV++ +A S+Y TLS DS G D D A+ +TLG+ D
Sbjct 127 TQQLGRAPTPSEVAAHLGIDREEVVQATIASSNYATLSTDSTSGPDGDFVALRETLGEPD 186
Query 195 AGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLA 254
A LD + + E +RPL+E LP RE+ VL LRFFD MTQTQIAER+G SQMHVSRLLAK+LA
Sbjct 187 ARLDAVVDNETIRPLIEKLPPREQAVLKLRFFDEMTQTQIAERMGYSQMHVSRLLAKALA 246
Query 255 RLRDQ 259
LRDQ
Sbjct 247 TLRDQ 251
>gi|257056691|ref|YP_003134523.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
gi|256586563|gb|ACU97696.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
Length=266
Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/257 (60%), Positives = 196/257 (77%), Gaps = 5/257 (1%)
Query 4 RAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGE 63
+ AGGSA Y D+ +F L L P+ R++I+ RCLPLA+HIARRF GRGE
Sbjct 13 KQAGGSAG----YEDLSPLFNALAALDPDDPQRVTLREEIITRCLPLAEHIARRFVGRGE 68
Query 64 PRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKEL 123
PRDDL+QVAR+GL+NA RFD G++FV+FAVPTIMGEVRRHFRD+SW+V+VPRRLKEL
Sbjct 69 PRDDLVQVARLGLLNAIDRFDASRGTEFVAFAVPTIMGEVRRHFRDSSWAVRVPRRLKEL 128
Query 124 HLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDA 183
HL L A++ L+QRLGRAP+ SELAAELG+ +V +GLLAG++Y ++S+D+ D+
Sbjct 129 HLSLSQASSKLAQRLGRAPTPSELAAELGLSPEDVWDGLLAGNAYQSVSMDA-AYDDEGT 187
Query 184 RAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQM 243
+ +T+G D L+ +E E L+PLL +LPERER VL+LRFF +MTQTQIAERVGISQM
Sbjct 188 LPLAETVGHDDVELEHVEYHESLQPLLASLPERERRVLILRFFGNMTQTQIAERVGISQM 247
Query 244 HVSRLLAKSLARLRDQL 260
HVSRLLA++L LR QL
Sbjct 248 HVSRLLARTLEFLRSQL 264
>gi|256379368|ref|YP_003103028.1| SigB/F/G subfamily RNA polymerase sigma-28 subunit [Actinosynnema
mirum DSM 43827]
gi|255923671|gb|ACU39182.1| RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily [Actinosynnema
mirum DSM 43827]
Length=268
Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/258 (60%), Positives = 193/258 (75%), Gaps = 0/258 (0%)
Query 4 RAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGE 63
+AA G +S +Y + +F L PA P +R RD++V LP+A HIARRF RGE
Sbjct 10 KAASGKSSSQGDYDHLAPLFTRLAQTPASDPARERLRDELVTEHLPVARHIARRFGHRGE 69
Query 64 PRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKEL 123
P DDL+QVA VGL+NA RFD + GSDF+SFAVPTIMGEVR++FRD+SWSV++PRRLKEL
Sbjct 70 PHDDLVQVATVGLINAVDRFDPERGSDFLSFAVPTIMGEVRKYFRDSSWSVRMPRRLKEL 129
Query 124 HLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDA 183
HL + +A LSQ LGRAP+ SELA LG+ R EV EGL AG++YH+ S+D +DD +
Sbjct 130 HLAINAGSARLSQELGRAPTPSELAQHLGLSREEVHEGLAAGNAYHSASLDDLLVADDSS 189
Query 184 RAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQM 243
++ TLG+ D L+ IE RE L PLLE LPERER ++V+RFF +MTQTQIA++VGISQM
Sbjct 190 ISLGSTLGEEDPELEAIEQRESLHPLLEKLPERERRIVVMRFFGNMTQTQIAQKVGISQM 249
Query 244 HVSRLLAKSLARLRDQLE 261
HVSRLLAK+L +LRD LE
Sbjct 250 HVSRLLAKTLRQLRDGLE 267
>gi|257054261|ref|YP_003132093.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
gi|256584133|gb|ACU95266.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
Length=267
Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/260 (56%), Positives = 189/260 (73%), Gaps = 0/260 (0%)
Query 1 VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60
+T GS + +++Y + +F E L P RD++V LPLA+HIA+RF G
Sbjct 1 MTESTTQGSRTPSDDYQHLTPLFEEFAALDPDDPRRAELRDRLVTGHLPLAEHIAQRFSG 60
Query 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120
RG ++DL+QVARVGL+NA RFD GSDF+SFAVPT+MGEVRRHFRD W ++VPRRL
Sbjct 61 RGVAKEDLVQVARVGLINAVDRFDPSRGSDFLSFAVPTVMGEVRRHFRDTGWVIRVPRRL 120
Query 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD 180
KELHL + A+ LSQRLGRAP+ SE+A LG+ EV EGL AG++YH++S+D +D
Sbjct 121 KELHLSINNASTQLSQRLGRAPTPSEIADHLGLTLEEVFEGLEAGNAYHSMSLDEVLSAD 180
Query 181 DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI 240
+ A+ DTLG+ DA L +EN E L+PL++ LPERERT+L LRF +MTQTQIAER+GI
Sbjct 181 TENLALGDTLGEEDAALAGVENHETLQPLVKQLPERERTILALRFVHNMTQTQIAERIGI 240
Query 241 SQMHVSRLLAKSLARLRDQL 260
SQMHVSRLLA++L +LR+ L
Sbjct 241 SQMHVSRLLARTLKKLREGL 260
>gi|300787087|ref|YP_003767378.1| RNA polymerase sigma factor [Amycolatopsis mediterranei U32]
gi|299796601|gb|ADJ46976.1| RNA polymerase sigma factor [Amycolatopsis mediterranei U32]
gi|340528583|gb|AEK43788.1| RNA polymerase sigma factor [Amycolatopsis mediterranei S699]
Length=263
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/249 (60%), Positives = 184/249 (74%), Gaps = 0/249 (0%)
Query 12 RANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQV 71
R +EYA +F+EL L P R K+V LPLA+HIA RF GRGEPR+DL+QV
Sbjct 11 RPDEYAHCEPLFQELGSLDTADPRRDVVRSKLVTELLPLAEHIATRFSGRGEPREDLVQV 70
Query 72 ARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTAT 131
AR+GL+NA RFD G DF+SFAVPTIMGEVRRHFRD WSV+VPRRLKELHL L +
Sbjct 71 ARIGLINAVDRFDPARGHDFLSFAVPTIMGEVRRHFRDTGWSVRVPRRLKELHLSLSQGS 130
Query 132 ADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLG 191
A LSQRLGRAP+ +ELA L +D EV EGLLAG++Y LS+D D +A ++ DT+G
Sbjct 131 AVLSQRLGRAPTPTELAEHLNLDVDEVREGLLAGNAYQALSVDKPVHDDAEALSLADTMG 190
Query 192 DVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAK 251
+ D + +EN E L+PLL+ LP+RER +LV+RFF +TQTQIA+RVGISQMHVSRLL++
Sbjct 191 EPDHEMAMVENHEALQPLLQELPKRERAILVMRFFGGLTQTQIADRVGISQMHVSRLLSQ 250
Query 252 SLARLRDQL 260
+L +LR +L
Sbjct 251 TLEQLRGKL 259
>gi|325674546|ref|ZP_08154234.1| RNA polymerase sigma-F factor [Rhodococcus equi ATCC 33707]
gi|325554806|gb|EGD24480.1| RNA polymerase sigma-F factor [Rhodococcus equi ATCC 33707]
Length=259
Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 146/254 (58%), Positives = 186/254 (74%), Gaps = 1/254 (0%)
Query 9 SASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDL 68
+ R +EY+DV MF L L P R+ I+ RCLPLA+HIARRF+ RGEP +DL
Sbjct 5 TTDRPDEYSDVKPMFASLQALDENDPGHAELRESIITRCLPLAEHIARRFDRRGEPFEDL 64
Query 69 IQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG 128
+QVA +GLVNA R+DV+ GSDF++FAVPTIMGEVRRHFRD W+V+VPRRLKELHL L
Sbjct 65 VQVASIGLVNAVDRYDVERGSDFLAFAVPTIMGEVRRHFRDTGWAVRVPRRLKELHLDLV 124
Query 129 TATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAIT 187
+A LSQRLGR+P+ E+A ELG++ EV +GL A + Y LS+D+ GS D +
Sbjct 125 KTSAQLSQRLGRSPTTREMAEELGIEVEEVAQGLQAANGYQALSVDAAAGSGPDTGSTLG 184
Query 188 DTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSR 247
D LGD D+ + +E+ E LR +LE LPERERTVL+LRFF + TQ+QIA VG+SQMHVSR
Sbjct 185 DLLGDNDSDIAGVEDHETLRVVLEGLPERERTVLLLRFFGNQTQSQIAAHVGVSQMHVSR 244
Query 248 LLAKSLARLRDQLE 261
+L+ +LARLR Q+E
Sbjct 245 ILSDTLARLRAQVE 258
>gi|312139980|ref|YP_004007316.1| sigma-70 factor sigf [Rhodococcus equi 103S]
gi|311889319|emb|CBH48635.1| sigma-70 factor SigF [Rhodococcus equi 103S]
Length=259
Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/254 (58%), Positives = 185/254 (73%), Gaps = 1/254 (0%)
Query 9 SASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDL 68
+ R +EY+DV MF L L P R+ I+ RCLPLA HIARRF+ RGEP +DL
Sbjct 5 TTDRPDEYSDVKPMFASLQALDENEPGHAELRESIITRCLPLAQHIARRFDRRGEPFEDL 64
Query 69 IQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG 128
+QVA +GLVNA R+DV+ GSDF++FAVPTIMGEVRRHFRD W+V+VPRRLKELHL L
Sbjct 65 VQVASIGLVNAVDRYDVERGSDFLAFAVPTIMGEVRRHFRDTGWAVRVPRRLKELHLDLV 124
Query 129 TATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAIT 187
+A LSQRLGR+P+ E+A ELG++ EV +GL A + Y LS+D+ GS D +
Sbjct 125 KTSAQLSQRLGRSPTTREMAEELGIEVEEVAQGLQAANGYQALSVDAAAGSGPDTGSTLG 184
Query 188 DTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSR 247
D LGD D+ + +E+ E LR +LE LPERERTVL+LRFF + TQ+QIA VG+SQMHVSR
Sbjct 185 DLLGDNDSDIAGVEDHETLRVVLEGLPERERTVLLLRFFGNQTQSQIAAHVGVSQMHVSR 244
Query 248 LLAKSLARLRDQLE 261
+L+ +LARLR Q+E
Sbjct 245 ILSDTLARLRAQVE 258
>gi|54025575|ref|YP_119817.1| putative sigma factor [Nocardia farcinica IFM 10152]
gi|54017083|dbj|BAD58453.1| putative sigma factor [Nocardia farcinica IFM 10152]
Length=315
Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 141/244 (58%), Positives = 190/244 (78%), Gaps = 2/244 (0%)
Query 16 YADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVG 75
Y D+P++F L + G+ E RD+++ RC+PLADHIAR+F GRGEP DDL QVARVG
Sbjct 68 YDDLPDLFDRLAAVEPGTAEHAALRDELISRCVPLADHIARKFSGRGEPFDDLTQVARVG 127
Query 76 LVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLS 135
LV+A RFD GS+F+SFAVPTIMGEVRR+FRD++W+++VPRR+KE HLR+G A LS
Sbjct 128 LVHAVDRFDPARGSNFLSFAVPTIMGEVRRYFRDHTWAMRVPRRVKETHLRIGAAIDTLS 187
Query 136 QRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGG-GSDDDARAITDTLGDVD 194
Q LGR+P+A E+AAEL +D EV + ++AG++Y SID+ G + DA ++ DTLG+ +
Sbjct 188 QSLGRSPTAKEIAAELRVDPDEVTQAVIAGNAYQPSSIDAAALGRESDA-SLLDTLGEEE 246
Query 195 AGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLA 254
A +++E +RPLL LPERER +L +RFF+SMTQTQIA+++GISQMHVSR+LAK+LA
Sbjct 247 AQFERVEEYVAIRPLLAGLPERERRILTMRFFESMTQTQIAKQMGISQMHVSRILAKTLA 306
Query 255 RLRD 258
RLR+
Sbjct 307 RLRE 310
>gi|108799863|ref|YP_640060.1| RNA polymerase sigma factor SigF [Mycobacterium sp. MCS]
gi|119868973|ref|YP_938925.1| RNA polymerase sigma factor SigF [Mycobacterium sp. KMS]
gi|126435506|ref|YP_001071197.1| RNA polymerase sigma factor SigF [Mycobacterium sp. JLS]
gi|108770282|gb|ABG09004.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119695062|gb|ABL92135.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium
sp. KMS]
gi|126235306|gb|ABN98706.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium
sp. JLS]
Length=269
Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 145/251 (58%), Positives = 190/251 (76%), Gaps = 1/251 (0%)
Query 9 SASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDL 68
S ++Y DVP+MFR L L G+P+ R R++IV RCLPLADHIA R+ +GE DDL
Sbjct 16 STRTQDDYTDVPDMFRLLSVLSPGTPDHDRQRERIVTRCLPLADHIAFRYHRKGENLDDL 75
Query 69 IQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG 128
+Q+ARVGL++A RFD + G++F+SFAVPT++GE+RRHFRDN W++ VPRRLK+LH+++
Sbjct 76 VQIARVGLMHAVNRFDPENGANFLSFAVPTMLGEIRRHFRDNGWAMHVPRRLKDLHVQIT 135
Query 129 TATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHT-LSIDSGGGSDDDARAIT 187
AT L+Q LGR P+ ++LAAELG DR EV+E L+AG +Y SDD R++
Sbjct 136 RATPRLTQSLGRPPTPTDLAAELGADRQEVVECLVAGDAYSLRSIDSPISSSDDTTRSLA 195
Query 188 DTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSR 247
DTLG+VD ++ I +RE LRPLL AL ERERTV+ LRFF SMTQTQIAER+G+SQM VSR
Sbjct 196 DTLGEVDGEMEHITDRESLRPLLAALTERERTVISLRFFASMTQTQIAERIGVSQMQVSR 255
Query 248 LLAKSLARLRD 258
+LAK+L +LRD
Sbjct 256 ILAKTLQQLRD 266
>gi|41407572|ref|NP_960408.1| RNA polymerase sigma factor SigF [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41395925|gb|AAS03791.1| SigF_1 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336457627|gb|EGO36631.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length=269
Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 144/262 (55%), Positives = 192/262 (74%), Gaps = 2/262 (0%)
Query 2 TARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGR 61
T AA ++ + Y DV EMF EL +PA S E++R R++IV RCLPLADH+A F R
Sbjct 8 TPTAARPTSQSDDSYEDVVEMFLELRRMPAESHEYRRQRERIVARCLPLADHVASHFARR 67
Query 62 GEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLK 121
GE DDL+QVAR+GL+NA RFD G F+ FAVPT+MGEVRR+FRD SW ++VPRRL+
Sbjct 68 GEGLDDLVQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLR 127
Query 122 ELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDD 181
ELH+++ TADL+Q+LGRAP+A EL+ L + R E++E L+AG +Y S+D+ G+D
Sbjct 128 ELHVQISRTTADLAQQLGRAPNAGELSQVLEVPREEIVECLVAGDAYRLDSLDAPQGADS 187
Query 182 DA--RAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239
R++ D++GD+D ++ I NRE LR L+ LP RER VL +RFF+SMTQ+QIAER+G
Sbjct 188 SGTPRSVADSVGDIDPQIEHITNREALRVLVATLPHREREVLRMRFFESMTQSQIAERIG 247
Query 240 ISQMHVSRLLAKSLARLRDQLE 261
+SQM VSR+LA +L LRDQLE
Sbjct 248 VSQMQVSRILANTLRCLRDQLE 269
>gi|315444786|ref|YP_004077665.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
gi|315263089|gb|ADT99830.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
Length=284
Score = 288 bits (737), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 146/258 (57%), Positives = 192/258 (75%), Gaps = 2/258 (0%)
Query 5 AAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEP 64
A S + + Y DV +MFREL L S F+R R+ I+ RCLPLADHIARRF GRGE
Sbjct 19 ARTASPRKRDGYDDVLDMFRELAVLDRDSAAFRRQREAIIARCLPLADHIARRFRGRGEG 78
Query 65 RDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELH 124
+DL+QVARVGL+NA RFDV + +DF++FAVPT+MGEVRR+FRD+ WS+KVPRRLKEL+
Sbjct 79 HEDLVQVARVGLLNAVNRFDVDSANDFLAFAVPTMMGEVRRYFRDHGWSLKVPRRLKELN 138
Query 125 LRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSID--SGGGSDDD 182
+RL A ADL+Q L RAP+ SELA LG+DR EV+EGL+A ++Y T S + + D +
Sbjct 139 VRLNAARADLTQELNRAPTPSELAKYLGIDREEVVEGLVAANAYSTRSTEQPTTFSGDGE 198
Query 183 ARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQ 242
++ DT G D + ++ + ++PLL ALPER+R VL LRFF+ TQ+QIAE++G+SQ
Sbjct 199 GLSLQDTFGAPDDNIQKVIDVNTVQPLLAALPERDRLVLKLRFFEDRTQSQIAEQIGVSQ 258
Query 243 MHVSRLLAKSLARLRDQL 260
MHVSRLLA++LA LRDQ+
Sbjct 259 MHVSRLLARALATLRDQV 276
>gi|118465934|ref|YP_882149.1| RNA polymerase sigma factor SigF [Mycobacterium avium 104]
gi|118167221|gb|ABK68118.1| RNA polymerase sigma-F factor [Mycobacterium avium 104]
Length=269
Score = 288 bits (736), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 144/262 (55%), Positives = 191/262 (73%), Gaps = 2/262 (0%)
Query 2 TARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGR 61
T AA + + Y DV EMF EL +PA S E++R R++IV RCLPLADH+A F R
Sbjct 8 TPTAARPTTQSDDSYEDVVEMFLELRRMPAESHEYRRQRERIVARCLPLADHVASHFARR 67
Query 62 GEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLK 121
GE DDL+QVAR+GL+NA RFD G F+ FAVPT+MGEVRR+FRD SW ++VPRRL+
Sbjct 68 GEGLDDLVQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLR 127
Query 122 ELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDD 181
ELH+++ TADL+Q+LGRAP+A EL+ L + R E++E L+AG +Y S+D+ G+D
Sbjct 128 ELHVQISRTTADLAQQLGRAPNAGELSQVLEVPREEIVECLVAGDAYRLDSLDAPQGADS 187
Query 182 DA--RAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239
R++ D++GD+D ++ I NRE LR L+ LP RER VL +RFF+SMTQ+QIAER+G
Sbjct 188 SGTPRSVADSVGDIDPQIEHITNREALRVLVATLPHREREVLRMRFFESMTQSQIAERIG 247
Query 240 ISQMHVSRLLAKSLARLRDQLE 261
+SQM VSR+LA +L LRDQLE
Sbjct 248 VSQMQVSRILANTLRCLRDQLE 269
>gi|145224453|ref|YP_001135131.1| FliA/WhiG family RNA polymerase sigma factor [Mycobacterium gilvum
PYR-GCK]
gi|145216939|gb|ABP46343.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium
gilvum PYR-GCK]
Length=342
Score = 288 bits (736), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 146/258 (57%), Positives = 192/258 (75%), Gaps = 2/258 (0%)
Query 5 AAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEP 64
A S + + Y DV +MFREL L S F+R R+ I+ RCLPLADHIARRF GRGE
Sbjct 77 ARTASPRKRDGYDDVLDMFRELAVLDRDSAAFRRQREAIIARCLPLADHIARRFRGRGEG 136
Query 65 RDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELH 124
+DL+QVARVGL+NA RFDV + +DF++FAVPT+MGEVRR+FRD+ WS+KVPRRLKEL+
Sbjct 137 HEDLVQVARVGLLNAVNRFDVDSANDFLAFAVPTMMGEVRRYFRDHGWSLKVPRRLKELN 196
Query 125 LRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSID--SGGGSDDD 182
+RL A ADL+Q L RAP+ SELA LG+DR EV+EGL+A ++Y T S + + D +
Sbjct 197 VRLNAARADLTQELNRAPTPSELAKYLGIDREEVVEGLVAANAYSTRSTEQPTTFSGDGE 256
Query 183 ARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQ 242
++ DT G D + ++ + ++PLL ALPER+R VL LRFF+ TQ+QIAE++G+SQ
Sbjct 257 GLSLQDTFGAPDDNIQKVIDVNTVQPLLAALPERDRLVLKLRFFEDRTQSQIAEQIGVSQ 316
Query 243 MHVSRLLAKSLARLRDQL 260
MHVSRLLA++LA LRDQ+
Sbjct 317 MHVSRLLARALATLRDQV 334
>gi|342861346|ref|ZP_08717994.1| RNA polymerase sigma factor SigF [Mycobacterium colombiense CECT
3035]
gi|342131246|gb|EGT84527.1| RNA polymerase sigma factor SigF [Mycobacterium colombiense CECT
3035]
Length=273
Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/261 (56%), Positives = 192/261 (74%), Gaps = 3/261 (1%)
Query 4 RAAGGSASRANE-YADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRG 62
R A +R ++ Y DV EMF L LPA S E+ R++IV RCLPLADH+A F RG
Sbjct 13 RPAPPPTTRTDDSYDDVVEMFLTLQRLPAESHEYAHQRERIVSRCLPLADHVASHFARRG 72
Query 63 EPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKE 122
E +DLIQVAR+GL+NA RFD G F+ FAVPT+MGEVRR+FRD SW ++VPRRL+E
Sbjct 73 EGLEDLIQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLRE 132
Query 123 LHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDD 182
LH+++ ATADLSQ+LGRAP+A EL+ L + R E++E L+AG +Y S+D+ G+D
Sbjct 133 LHVQISRATADLSQQLGRAPTAGELSQMLEVPREEIVECLVAGDAYRLDSLDAPLGADSS 192
Query 183 A--RAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI 240
R++ D++GD+D ++ I NRE LR L+ LP+RER VL +RFF+SMTQ+QIAER+G+
Sbjct 193 GTPRSVADSVGDIDPQIEHITNREALRVLVATLPQREREVLRMRFFESMTQSQIAERIGV 252
Query 241 SQMHVSRLLAKSLARLRDQLE 261
SQM VSR+LA +L+ LRDQLE
Sbjct 253 SQMQVSRILASTLSSLRDQLE 273
>gi|120403519|ref|YP_953348.1| FliA/WhiG family RNA polymerase sigma factor [Mycobacterium vanbaalenii
PYR-1]
gi|119956337|gb|ABM13342.1| RNA polymerase, sigma 37 subunit, RpsB/SigB [Mycobacterium vanbaalenii
PYR-1]
Length=242
Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 139/241 (58%), Positives = 189/241 (79%), Gaps = 2/241 (0%)
Query 22 MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV 81
MFREL L GS ++R RD I++RCLPLADHIARRF GRGE +DL+QVARVGL+NA
Sbjct 1 MFRELALLDEGSAPYRRQRDAIIERCLPLADHIARRFRGRGEAHEDLVQVARVGLLNAVN 60
Query 82 RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 141
RFDV + +DF++FAVPT+MGEVRR+FRD+ WS+KVPRRLKEL++RL +A ++L+ +L RA
Sbjct 61 RFDVDSANDFLAFAVPTMMGEVRRYFRDHGWSLKVPRRLKELNVRLNSARSELTHQLNRA 120
Query 142 PSASELAAELGMDRAEVIEGLLAGSSYHTLSI--DSGGGSDDDARAITDTLGDVDAGLDQ 199
P+ SELA LGM+R E++EGL+A ++Y T S ++ D D + DT+G D G+ +
Sbjct 121 PTPSELAEFLGMERDEIVEGLVAANAYSTRSTEQETMRTGDGDGLTLLDTIGGPDEGIQR 180
Query 200 IENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQ 259
+ + + ++PLL LP R+R VL LRFFD++TQ+QIAER+G+SQMHVSRLLA++LA LR+Q
Sbjct 181 VIDIQTVQPLLAKLPARDRLVLQLRFFDNLTQSQIAERIGVSQMHVSRLLARALATLREQ 240
Query 260 L 260
+
Sbjct 241 I 241
>gi|169629597|ref|YP_001703246.1| RNA polymerase sigma factor SigF [Mycobacterium abscessus ATCC
19977]
gi|169241564|emb|CAM62592.1| Alternative sigma factor SigF [Mycobacterium abscessus]
Length=272
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/248 (56%), Positives = 187/248 (76%), Gaps = 1/248 (0%)
Query 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73
++YADVP+MFR L GL S +QR ++IV RCLPLAD++AR F+ RGE +DLIQVAR
Sbjct 24 DDYADVPDMFRSLAGLAEHSDAYQRKHEEIVTRCLPLADNVARHFDRRGEDLEDLIQVAR 83
Query 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133
VGL+NA RFD + G+ F+ FAVPT+MGEVRRHFRD+ WS+ VPR +++ H ++ ATA+
Sbjct 84 VGLLNAVNRFDPEKGASFLGFAVPTMMGEVRRHFRDHGWSLHVPRAIRDRHAQISRATAE 143
Query 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSG-GGSDDDARAITDTLGD 192
L+Q L RAP+A ELAAELG+DR EV+E L+A +Y SI++ D +++ ++D LG+
Sbjct 144 LTQELQRAPTAGELAAELGIDREEVVESLIAADAYQPQSIEAPLSHGDQESKHLSDLLGN 203
Query 193 VDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKS 252
D L+ + NRE +RPLL LP RERTVL LRFF MTQ+QIA ++G+SQMHVSR+L+ +
Sbjct 204 EDPALEHVTNREAVRPLLANLPLRERTVLELRFFKGMTQSQIAAQIGVSQMHVSRILSDT 263
Query 253 LARLRDQL 260
L LR+Q+
Sbjct 264 LRYLREQM 271
>gi|229492301|ref|ZP_04386108.1| RNA polymerase sigma-F factor [Rhodococcus erythropolis SK121]
gi|229320710|gb|EEN86524.1| RNA polymerase sigma-F factor [Rhodococcus erythropolis SK121]
Length=260
Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 135/249 (55%), Positives = 178/249 (72%), Gaps = 0/249 (0%)
Query 12 RANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQV 71
+ ++Y E+F + LP P ++ I++ CLPLA H+ARR++GRG+P +DL QV
Sbjct 8 KKDQYETAVELFVSMASLPPNDPSREKITTSIIELCLPLATHVARRYQGRGQPFEDLEQV 67
Query 72 ARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTAT 131
ARVGL+ A RFDV GSDF+SFAVPT+MGEVR+HFRD+ WSV+VPR L+E HL L A
Sbjct 68 ARVGLIQAVQRFDVDKGSDFLSFAVPTVMGEVRKHFRDHGWSVRVPRSLQERHLALNRAL 127
Query 132 ADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLG 191
LSQ LGRAP+ +ELA EL ++ EV +GL AG+SY T +D+ D + DTLG
Sbjct 128 TTLSQTLGRAPTVAELAKELDIEPDEVEQGLTAGNSYRTTPLDTASAGDGSGLTLIDTLG 187
Query 192 DVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAK 251
D + +I+N E LRP L ALPERERT++VLRFF +TQ+QIAE+VGISQMHVSR+L +
Sbjct 188 QYDEAISRIDNHETLRPALLALPERERTIVVLRFFGHLTQSQIAEKVGISQMHVSRILTQ 247
Query 252 SLARLRDQL 260
SL +LR ++
Sbjct 248 SLKQLRTEM 256
>gi|226304764|ref|YP_002764722.1| RNA polymerase sigma factor [Rhodococcus erythropolis PR4]
gi|226183879|dbj|BAH31983.1| RNA polymerase sigma factor [Rhodococcus erythropolis PR4]
Length=272
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/249 (54%), Positives = 179/249 (72%), Gaps = 0/249 (0%)
Query 12 RANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQV 71
+ ++Y E+F + LP P ++ + I++ CLPLA H+ARR++GRG+P +DL QV
Sbjct 20 KKDQYELAVELFVSMASLPPDDPTREKITNSIIELCLPLATHVARRYQGRGQPFEDLEQV 79
Query 72 ARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTAT 131
ARVGLV A RFDV GSDF+SFAVPT+MGEVR+HFRD+ WSV+VPR L+E HL L A
Sbjct 80 ARVGLVQAVQRFDVDKGSDFLSFAVPTVMGEVRKHFRDHGWSVRVPRSLQERHLALNRAL 139
Query 132 ADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLG 191
LSQ LGRAP+ +ELA EL ++ EV +GL AG+SY T +D+ D + DTLG
Sbjct 140 TSLSQTLGRAPTVAELATELDIEPDEVEQGLTAGNSYRTTPLDTASAGDGSGLTLIDTLG 199
Query 192 DVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAK 251
D + +I+N E LRP L ALPERERT++VLRFF +TQ+QIAE++GISQMHVSR+L +
Sbjct 200 QYDEAISRIDNHETLRPALLALPERERTIVVLRFFGHLTQSQIAEKIGISQMHVSRILTQ 259
Query 252 SLARLRDQL 260
+L +LR ++
Sbjct 260 TLKQLRTEM 268
>gi|302527791|ref|ZP_07280133.1| RNA polymerase sigma-F factor [Streptomyces sp. AA4]
gi|302436686|gb|EFL08502.1| RNA polymerase sigma-F factor [Streptomyces sp. AA4]
Length=243
Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/239 (60%), Positives = 180/239 (76%), Gaps = 0/239 (0%)
Query 22 MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV 81
MF EL LPA P R R+++V LP+A+HIA RF GRGEPR+DL+QVAR+GL+NA
Sbjct 1 MFEELAALPADDPRRPRLRERLVTEFLPVAEHIATRFTGRGEPREDLVQVARIGLINAID 60
Query 82 RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 141
RF G DF+SFAVPTIMGE+RR+FRD WSV+VPRRLKELHL L +A LSQ LGRA
Sbjct 61 RFTPDRGPDFLSFAVPTIMGEIRRYFRDTGWSVRVPRRLKELHLSLSRGSATLSQTLGRA 120
Query 142 PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVDAGLDQIE 201
P+ +ELA LG++ +EV EGL+AG +Y TLS+D D + + DTLG D ++ IE
Sbjct 121 PTPTELAEHLGLELSEVHEGLVAGHAYQTLSVDKPVHDDAEPLLLADTLGSDDPEIEHIE 180
Query 202 NREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL 260
N E L+PLL LP+RER +LV+RFF +TQTQIAE+VGISQMHVSRLL+++L +LRD+L
Sbjct 181 NHEALQPLLRELPKRERAILVMRFFGGLTQTQIAEQVGISQMHVSRLLSQTLEQLRDKL 239
>gi|262204122|ref|YP_003275330.1| RNA polymerase sigma-70 factor, sigma-B/F/G subfamily [Gordonia
bronchialis DSM 43247]
gi|262087469|gb|ACY23437.1| RNA polymerase sigma-70 factor, sigma-B/F/G subfamily [Gordonia
bronchialis DSM 43247]
Length=276
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 145/254 (58%), Positives = 185/254 (73%), Gaps = 2/254 (0%)
Query 7 GGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRD 66
G A ++YADV REL + + RD I++RCLPLA+H+A RF RGEP D
Sbjct 16 GTGARHGDDYADVVAALRELSA-ETDAAAHAKKRDNIIERCLPLAEHVAWRFSDRGEPFD 74
Query 67 DLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLR 126
DL+QVAR+G+VNA RFD + G F+SFAVPT+MGEVRRHFRD+ W+++VPRR KE L
Sbjct 75 DLLQVARIGVVNAVDRFDGERGDSFLSFAVPTVMGEVRRHFRDSMWAIRVPRRAKETSLS 134
Query 127 LGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAI 186
+G AT +L QRLGR+P SELAA LG+ EVI+GLLA S+Y SID+ DDD R+I
Sbjct 135 IGKATDELVQRLGRSPRPSELAAHLGLPVDEVIDGLLARSAYQARSIDA-TPEDDDGRSI 193
Query 187 TDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVS 246
DTLGD DA L QI+ LRP+L+ LP+RER ++ LRFF +M+Q++IA RVGISQMHVS
Sbjct 194 RDTLGDDDARLAQIDEFVTLRPVLDQLPDREREIVTLRFFHAMSQSEIAARVGISQMHVS 253
Query 247 RLLAKSLARLRDQL 260
RLL+++L LR+QL
Sbjct 254 RLLSRTLETLREQL 267
>gi|254775435|ref|ZP_05216951.1| RNA polymerase sigma factor SigF [Mycobacterium avium subsp.
avium ATCC 25291]
Length=242
Score = 278 bits (712), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 137/242 (57%), Positives = 182/242 (76%), Gaps = 2/242 (0%)
Query 22 MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV 81
MF EL +PA S E++R R++IV RCLPLADH+A F RGE DDL+QVAR+GL+NA
Sbjct 1 MFLELRRMPAESHEYRRQRERIVARCLPLADHVASHFARRGEGLDDLVQVARLGLMNAVN 60
Query 82 RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 141
RFD G F+ FAVPT+MGEVRR+FRD SW ++VPRRL+ELH+++ TADL+Q+LGRA
Sbjct 61 RFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLRELHVQISRTTADLAQQLGRA 120
Query 142 PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDA--RAITDTLGDVDAGLDQ 199
P+A EL+ L + R E++E L+AG +Y S+D+ G+D R++ D++GD+D ++
Sbjct 121 PNAGELSQVLEVPREEIVECLVAGDAYRLDSLDAPQGADSSGTPRSVADSVGDIDPQIEH 180
Query 200 IENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQ 259
I NRE LR L+ LP RER VL +RFF+SMTQ+QIAER+G+SQM VSR+LA +L LRDQ
Sbjct 181 ITNREALRVLVATLPHREREVLRMRFFESMTQSQIAERIGVSQMQVSRILANTLRCLRDQ 240
Query 260 LE 261
LE
Sbjct 241 LE 242
>gi|302528260|ref|ZP_07280602.1| RNA polymerase sigma-B factor [Streptomyces sp. AA4]
gi|302437155|gb|EFL08971.1| RNA polymerase sigma-B factor [Streptomyces sp. AA4]
Length=261
Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 187/250 (75%), Gaps = 0/250 (0%)
Query 11 SRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQ 70
+R ++Y +F E+ L + E R R ++++ LPLA+HIARRF RG+P +DL+Q
Sbjct 4 TRRDDYRHYAALFEEISHLAEDTDEHSRLRRRLIEEHLPLAEHIARRFARRGQPTEDLLQ 63
Query 71 VARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTA 130
VAR+GL+NA R+D +DFV+FAVPT+MGEVRR+FRD++WSV+VPRRLKELHL +G A
Sbjct 64 VARIGLINAVDRYDPARQTDFVAFAVPTVMGEVRRYFRDHTWSVRVPRRLKELHLTVGQA 123
Query 131 TADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTL 190
+L QRLGRAP+A ELA L +D EV E L AG++Y SID D + A+ DTL
Sbjct 124 ATELGQRLGRAPTARELADHLDLDLDEVAEALHAGNAYQASSIDYPAHDDSGSVALADTL 183
Query 191 GDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLA 250
GD D ++++E+RE L+PLL +LPERER +LV+RFF +MTQ+QIAERVG+SQM VSRLLA
Sbjct 184 GDEDPEIEKLEDRETLKPLLRSLPERERAILVMRFFSNMTQSQIAERVGLSQMQVSRLLA 243
Query 251 KSLARLRDQL 260
++L+ LRDQL
Sbjct 244 RTLSTLRDQL 253
>gi|296164736|ref|ZP_06847300.1| RNA polymerase sigma-F factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899907|gb|EFG79349.1| RNA polymerase sigma-F factor [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=288
Score = 275 bits (703), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 136/250 (55%), Positives = 183/250 (74%), Gaps = 2/250 (0%)
Query 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73
+ Y DV +MF +L +PA S E+ R R++IV RCLPLADH+A F RGE DDL+QVAR
Sbjct 39 DSYDDVVDMFVQLRTMPAESHEYARQRERIVARCLPLADHVASHFARRGEGLDDLVQVAR 98
Query 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133
+GL+NA RFD G F+ FAVPT+MGEVRR+FRD SW ++VPRRL+ELH+++ T D
Sbjct 99 LGLMNAVNRFDPDKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLRELHVQISRTTGD 158
Query 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDA--RAITDTLG 191
L+Q+LGRAP+A EL+ L + E++E L+AG +Y S+D+ G+D R + D +G
Sbjct 159 LAQKLGRAPTAGELSRALEVPHEEIVECLVAGDAYRLDSLDAPMGTDSSGTPRLVADAVG 218
Query 192 DVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAK 251
+D ++ I NRE LR L+ ALPERER VL +RFF+SMTQ+QIAER+G+SQM VSR+LA
Sbjct 219 GIDPQIEHITNREALRVLVAALPEREREVLRMRFFESMTQSQIAERIGVSQMQVSRILAG 278
Query 252 SLARLRDQLE 261
+L LR+QL+
Sbjct 279 TLRCLREQLD 288
>gi|226359630|ref|YP_002777408.1| RNA polymerase sigma factor [Rhodococcus opacus B4]
gi|226238115|dbj|BAH48463.1| RNA polymerase sigma factor [Rhodococcus opacus B4]
Length=265
Score = 274 bits (701), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 143/247 (58%), Positives = 180/247 (73%), Gaps = 0/247 (0%)
Query 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73
++Y DV L L S E RD+I+ RCLPLADHIARRF GRGE +DL+QVAR
Sbjct 16 DDYKDVAPAVARLRILEESSGEASALRDEIITRCLPLADHIARRFGGRGEAHEDLLQVAR 75
Query 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133
+GLV A RFD G DFVS+AVPTIMGEVRR+FRD WS++VPRR++ELH + A +
Sbjct 76 LGLVKAVDRFDPDRGFDFVSYAVPTIMGEVRRYFRDTGWSMRVPRRMQELHALIAKAVDE 135
Query 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193
LSQ LGR+PSASE+AAEL +D EV EGLLA ++Y TLS+D+ G D D + +TLG+
Sbjct 136 LSQELGRSPSASEIAAELELDVREVSEGLLAKNAYQTLSMDAAMGDDPDDLPLAETLGEE 195
Query 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253
D L +E+ +RP LE LP ER VL+LRFF SMTQT+IA+RVG+SQM VSR+LA++L
Sbjct 196 DPELANVESHASVRPALEKLPPLERRVLMLRFFGSMTQTEIAQRVGVSQMQVSRILARTL 255
Query 254 ARLRDQL 260
+ LR+QL
Sbjct 256 SGLREQL 262
>gi|254818833|ref|ZP_05223834.1| RNA polymerase sigma factor SigF [Mycobacterium intracellulare
ATCC 13950]
Length=242
Score = 274 bits (701), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 137/242 (57%), Positives = 180/242 (75%), Gaps = 2/242 (0%)
Query 22 MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV 81
MF L +PA S E+ R R+ IV RCLPLADH+A F RGE +DLIQVAR+GL+NA
Sbjct 1 MFVALHRMPAESHEYARQREYIVARCLPLADHVASHFARRGEGLEDLIQVARLGLMNAVN 60
Query 82 RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 141
RFD G F+ FAVPT+MGEVRR+FRD SW ++VPRRL+ELH+++ ATADL+Q+LGRA
Sbjct 61 RFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLRELHVQISRATADLAQQLGRA 120
Query 142 PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDA--RAITDTLGDVDAGLDQ 199
P+A EL+ L + R E++E L+AG +Y S+D+ G+D R++ D++GD+D ++
Sbjct 121 PNAGELSQMLEVPREEIVECLVAGDAYRLDSLDAPLGADSSGTPRSVADSVGDIDPQIEH 180
Query 200 IENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQ 259
I NRE LR L+ LP RER VL +RFF+SMTQ+QIAER+G+SQM VSR+LA +L LRDQ
Sbjct 181 ITNREALRALVATLPPRERDVLRMRFFESMTQSQIAERIGVSQMQVSRILANTLRCLRDQ 240
Query 260 LE 261
LE
Sbjct 241 LE 242
>gi|111017120|ref|YP_700092.1| sigma factor, sigma 70 type, group 3 [Rhodococcus jostii RHA1]
gi|110816650|gb|ABG91934.1| sigma factor, sigma 70 type, group 3 [Rhodococcus jostii RHA1]
Length=265
Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/247 (58%), Positives = 180/247 (73%), Gaps = 0/247 (0%)
Query 14 NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR 73
++Y DV L L A S E RD+++ RCLPLADHIARRF GRGE +DL+QVAR
Sbjct 16 DDYKDVAPTVARLRALDASSGEASALRDEVITRCLPLADHIARRFGGRGEAHEDLLQVAR 75
Query 74 VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD 133
+GLV A RFD G DFVS+AVPTIMGEVRR+FRD WS++VPRR++ELH + A +
Sbjct 76 LGLVKAVDRFDPDRGFDFVSYAVPTIMGEVRRYFRDTGWSMRVPRRMQELHALITKAVDE 135
Query 134 LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV 193
LSQ LGR+PSASE+AA+L +D EV EGLLA ++Y TLS+D+ G D D + +TLG+
Sbjct 136 LSQELGRSPSASEIAAQLELDVREVSEGLLAKNAYQTLSMDAAMGDDPDDLPLAETLGEE 195
Query 194 DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL 253
D L +E+ +RP L+ LP ER VL+LRFF SMTQT+IA+RVG+SQM VSR+LA++L
Sbjct 196 DPELANVESHAAVRPALQKLPPLERRVLMLRFFGSMTQTEIAQRVGVSQMQVSRILARTL 255
Query 254 ARLRDQL 260
+ LR QL
Sbjct 256 SGLRAQL 262
>gi|345009233|ref|YP_004811587.1| Sig B/F/G subfamily RNA polymerase sigma-28 subunit [Streptomyces
violaceusniger Tu 4113]
gi|344035582|gb|AEM81307.1| RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily [Streptomyces
violaceusniger Tu 4113]
Length=293
Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 135/239 (57%), Positives = 179/239 (75%), Gaps = 1/239 (0%)
Query 22 MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV 81
MF EL GLP GS E R+ +V+ LPL +H+ARRF RGEP DDL QVA +GL+ +
Sbjct 52 MFLELRGLPEGSTERAEMRNHLVRMHLPLVEHLARRFRNRGEPLDDLTQVATIGLIKSVD 111
Query 82 RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 141
RFD G +F ++A PT++GE++RHFRD W+V+VPRRL+EL L L TATA+LSQR GRA
Sbjct 112 RFDPDRGVEFSTYATPTVVGEIKRHFRDKGWAVRVPRRLQELRLSLTTATAELSQRHGRA 171
Query 142 PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVDAGLDQIE 201
P+ ELA +L + EV+EGL + ++Y TLS+D +DD++ A+ DTLG D L+ +E
Sbjct 172 PTVHELAEQLSISEEEVLEGLESANAYSTLSLDV-PDTDDESPAVADTLGAEDEALEGVE 230
Query 202 NREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL 260
RE L+PLLE LP RE+ +L+LRFF +MTQ+QIA+ VGISQMHVSRLLA++LA+LRD+L
Sbjct 231 YRESLKPLLEDLPPREKKILLLRFFGNMTQSQIAQEVGISQMHVSRLLARTLAQLRDKL 289
>gi|291454068|ref|ZP_06593458.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|291357017|gb|EFE83919.1| RNA polymerase sigma factor [Streptomyces albus J1074]
Length=365
Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 132/239 (56%), Positives = 183/239 (77%), Gaps = 1/239 (0%)
Query 22 MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV 81
+F EL LPAG PE+ R+++V+ LPL +H+ARRF RGEP DDL QVA +GL+ +
Sbjct 124 LFIELRTLPAGGPEYAELRNRLVRMHLPLVEHLARRFRNRGEPLDDLTQVATIGLIKSVD 183
Query 82 RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 141
RFD + G +F ++A PT++GE++RHFRD W+V+VPRRL+EL L L +ATA+LSQR GR+
Sbjct 184 RFDPERGVEFSTYATPTVVGEIKRHFRDKGWAVRVPRRLQELRLSLTSATAELSQRHGRS 243
Query 142 PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVDAGLDQIE 201
P+ ELA +LG+ EV+EGL + ++Y TLS+D +DD++ A+ DTLG D L+ +E
Sbjct 244 PTVHELAEKLGISEEEVLEGLESANAYSTLSLDV-PDTDDESPAVADTLGSEDEALEGVE 302
Query 202 NREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL 260
RE L+PLLE LP RE+ +L+LRFF +MTQ+QIA+ VGISQMHVSRLLA++LA+LR++L
Sbjct 303 YRESLKPLLEDLPPREKRILLLRFFGNMTQSQIAQEVGISQMHVSRLLARTLAQLREKL 361
Lambda K H
0.320 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 388543189928
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40