BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3286c

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610422|ref|NP_217803.1|  RNA polymerase sigma factor SigF [M...   518    2e-145
gi|1276889|gb|AAC44103.1|  stress response/stationary phase sigma...   517    5e-145
gi|289755409|ref|ZP_06514787.1|  stress response/stationary phase...   517    6e-145
gi|240171602|ref|ZP_04750261.1|  RNA polymerase sigma factor SigF...   468    3e-130
gi|118618107|ref|YP_906439.1|  RNA polymerase sigma factor SigF [...   462    2e-128
gi|296168913|ref|ZP_06850582.1|  RNA polymerase sigma-F factor [M...   452    2e-125
gi|41409504|ref|NP_962340.1|  RNA polymerase sigma factor SigF [M...   447    9e-124
gi|254819525|ref|ZP_05224526.1|  RNA polymerase sigma factor SigF...   434    6e-120
gi|108798252|ref|YP_638449.1|  RNA polymerase sigma factor SigF [...   424    8e-117
gi|120402666|ref|YP_952495.1|  RNA polymerase sigma factor SigF [...   420    1e-115
gi|315445714|ref|YP_004078593.1|  RNA polymerase sigma factor, si...   419    3e-115
gi|118470482|ref|YP_886176.1|  RNA polymerase sigma factor SigF [...   419    3e-115
gi|145225367|ref|YP_001136045.1|  RNA polymerase sigma factor Sig...   418    4e-115
gi|333991745|ref|YP_004524359.1|  RNA polymerase sigma factor Sig...   415    4e-114
gi|336459631|gb|EGO38566.1|  RNA polymerase sigma factor, sigma-7...   412    2e-113
gi|118464372|ref|YP_883398.1|  RNA polymerase sigma factor SigF [...   409    3e-112
gi|342861501|ref|ZP_08718148.1|  RNA polymerase sigma factor SigF...   391    4e-107
gi|226361251|ref|YP_002779029.1|  RNA polymerase sigma factor Sig...   330    1e-88 
gi|111019111|ref|YP_702083.1|  RNA polymerase sigma factor SigF [...   328    4e-88 
gi|229490177|ref|ZP_04384024.1|  RNA polymerase sigma-F factor [R...   325    3e-87 
gi|226305067|ref|YP_002765025.1|  RNA polymerase sigma factor Sig...   325    6e-87 
gi|315444787|ref|YP_004077666.1|  RNA polymerase sigma factor, si...   306    2e-81 
gi|145224454|ref|YP_001135132.1|  FliA/WhiG family RNA polymerase...   306    2e-81 
gi|257056691|ref|YP_003134523.1|  RNA polymerase sigma factor, si...   302    3e-80 
gi|256379368|ref|YP_003103028.1|  SigB/F/G subfamily RNA polymera...   301    5e-80 
gi|257054261|ref|YP_003132093.1|  RNA polymerase sigma factor, si...   294    1e-77 
gi|300787087|ref|YP_003767378.1|  RNA polymerase sigma factor [Am...   293    1e-77 
gi|325674546|ref|ZP_08154234.1|  RNA polymerase sigma-F factor [R...   291    7e-77 
gi|312139980|ref|YP_004007316.1|  sigma-70 factor sigf [Rhodococc...   290    1e-76 
gi|54025575|ref|YP_119817.1|  putative sigma factor [Nocardia far...   289    3e-76 
gi|108799863|ref|YP_640060.1|  RNA polymerase sigma factor SigF [...   289    3e-76 
gi|41407572|ref|NP_960408.1|  RNA polymerase sigma factor SigF [M...   288    5e-76 
gi|315444786|ref|YP_004077665.1|  RNA polymerase sigma factor, si...   288    6e-76 
gi|118465934|ref|YP_882149.1|  RNA polymerase sigma factor SigF [...   288    6e-76 
gi|145224453|ref|YP_001135131.1|  FliA/WhiG family RNA polymerase...   288    8e-76 
gi|342861346|ref|ZP_08717994.1|  RNA polymerase sigma factor SigF...   286    2e-75 
gi|120403519|ref|YP_953348.1|  FliA/WhiG family RNA polymerase si...   285    3e-75 
gi|169629597|ref|YP_001703246.1|  RNA polymerase sigma factor Sig...   284    1e-74 
gi|229492301|ref|ZP_04386108.1|  RNA polymerase sigma-F factor [R...   282    3e-74 
gi|226304764|ref|YP_002764722.1|  RNA polymerase sigma factor [Rh...   280    1e-73 
gi|302527791|ref|ZP_07280133.1|  RNA polymerase sigma-F factor [S...   280    2e-73 
gi|262204122|ref|YP_003275330.1|  RNA polymerase sigma-70 factor,...   278    4e-73 
gi|254775435|ref|ZP_05216951.1|  RNA polymerase sigma factor SigF...   278    5e-73 
gi|302528260|ref|ZP_07280602.1|  RNA polymerase sigma-B factor [S...   277    1e-72 
gi|296164736|ref|ZP_06847300.1|  RNA polymerase sigma-F factor [M...   275    6e-72 
gi|226359630|ref|YP_002777408.1|  RNA polymerase sigma factor [Rh...   274    8e-72 
gi|254818833|ref|ZP_05223834.1|  RNA polymerase sigma factor SigF...   274    8e-72 
gi|111017120|ref|YP_700092.1|  sigma factor, sigma 70 type, group...   273    2e-71 
gi|345009233|ref|YP_004811587.1|  Sig B/F/G subfamily RNA polymer...   271    6e-71 
gi|291454068|ref|ZP_06593458.1|  RNA polymerase sigma factor [Str...   271    7e-71 


>gi|15610422|ref|NP_217803.1| RNA polymerase sigma factor SigF [Mycobacterium tuberculosis 
H37Rv]
 gi|15842877|ref|NP_337914.1| RNA polymerase sigma factor SigF [Mycobacterium tuberculosis 
CDC1551]
 gi|31794466|ref|NP_856959.1| RNA polymerase sigma factor SigF [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=261

 Score =  518 bits (1335),  Expect = 2e-145, Method: Compositional matrix adjust.
 Identities = 260/261 (99%), Positives = 261/261 (100%), Gaps = 0/261 (0%)

Query  1    VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60
            +TARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG
Sbjct  1    MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60

Query  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120
            RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120

Query  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD  180
            KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD
Sbjct  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD  180

Query  181  DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI  240
            DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI
Sbjct  181  DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI  240

Query  241  SQMHVSRLLAKSLARLRDQLE  261
            SQMHVSRLLAKSLARLRDQLE
Sbjct  241  SQMHVSRLLAKSLARLRDQLE  261


>gi|1276889|gb|AAC44103.1| stress response/stationary phase sigma factor [Mycobacterium 
tuberculosis H37Rv]
 gi|1589717|prf||2211432A RNA polymerase sigma factor
Length=261

 Score =  517 bits (1332),  Expect = 5e-145, Method: Compositional matrix adjust.
 Identities = 259/261 (99%), Positives = 261/261 (100%), Gaps = 0/261 (0%)

Query  1    VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60
            +TARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG
Sbjct  1    MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60

Query  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120
            RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120

Query  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD  180
            KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD
Sbjct  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD  180

Query  181  DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI  240
            DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI
Sbjct  181  DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI  240

Query  241  SQMHVSRLLAKSLARLRDQLE  261
            SQMHVSR+LAKSLARLRDQLE
Sbjct  241  SQMHVSRVLAKSLARLRDQLE  261


>gi|289755409|ref|ZP_06514787.1| stress response/stationary phase sigma factor SigF [Mycobacterium 
tuberculosis EAS054]
 gi|289695996|gb|EFD63425.1| stress response/stationary phase sigma factor SigF [Mycobacterium 
tuberculosis EAS054]
Length=261

 Score =  517 bits (1332),  Expect = 6e-145, Method: Compositional matrix adjust.
 Identities = 259/261 (99%), Positives = 261/261 (100%), Gaps = 0/261 (0%)

Query  1    VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60
            +TARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG
Sbjct  1    MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60

Query  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120
            RGEPRDDLIQVARVGLVNAAVRFD+KTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct  61   RGEPRDDLIQVARVGLVNAAVRFDMKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120

Query  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD  180
            KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD
Sbjct  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD  180

Query  181  DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI  240
            DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI
Sbjct  181  DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI  240

Query  241  SQMHVSRLLAKSLARLRDQLE  261
            SQMHVSRLLAKSLARLRDQLE
Sbjct  241  SQMHVSRLLAKSLARLRDQLE  261


>gi|240171602|ref|ZP_04750261.1| RNA polymerase sigma factor SigF [Mycobacterium kansasii ATCC 
12478]
Length=262

 Score =  468 bits (1205),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 234/262 (90%), Positives = 250/262 (96%), Gaps = 1/262 (0%)

Query  1    VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60
            +T RAAGGSASR NEYADVPEMFREL G    SP+FQRHRDKIV+RCLPLADHIARRFEG
Sbjct  1    MTPRAAGGSASRPNEYADVPEMFRELAGFDPDSPDFQRHRDKIVERCLPLADHIARRFEG  60

Query  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120
            RGEPRDDLIQVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct  61   RGEPRDDLIQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120

Query  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-  179
            KELHLRLGTATA+LSQRLGRAP+A+ELAAELGMDR EV+EGL+AGSSY+TLSIDSGGG+ 
Sbjct  121  KELHLRLGTATAELSQRLGRAPTATELAAELGMDRGEVVEGLVAGSSYNTLSIDSGGGNE  180

Query  180  DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG  239
            DDDARAI DTLGD+DAGLD+IE+RE LRPLLEALPERERTVL+LRFF+SMTQTQIAERVG
Sbjct  181  DDDARAIADTLGDMDAGLDRIEDRESLRPLLEALPERERTVLILRFFESMTQTQIAERVG  240

Query  240  ISQMHVSRLLAKSLARLRDQLE  261
            ISQMHVSRLLAKSLARLRDQLE
Sbjct  241  ISQMHVSRLLAKSLARLRDQLE  262


>gi|118618107|ref|YP_906439.1| RNA polymerase sigma factor SigF [Mycobacterium ulcerans Agy99]
 gi|183981270|ref|YP_001849561.1| alternate RNA polymerase sigma factor SigF [Mycobacterium marinum 
M]
 gi|118570217|gb|ABL04968.1| alternate RNA polymerase sigma factor SigF [Mycobacterium ulcerans 
Agy99]
 gi|183174596|gb|ACC39706.1| alternate RNA polymerase sigma factor SigF [Mycobacterium marinum 
M]
Length=262

 Score =  462 bits (1189),  Expect = 2e-128, Method: Compositional matrix adjust.
 Identities = 231/262 (89%), Positives = 246/262 (94%), Gaps = 1/262 (0%)

Query  1    VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60
            +T+R AGGS+SR NEYADVPEMFREL    A SP FQRHRD IV+RCLPLADHIARRFEG
Sbjct  1    MTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG  60

Query  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120
            RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct  61   RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120

Query  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-  179
            KELHLRLG ATA+LSQRLGRAP+A+ELAAEL MDRAEV+EGL+AGSSY+TLSIDSG GS 
Sbjct  121  KELHLRLGAATAELSQRLGRAPTATELAAELEMDRAEVVEGLVAGSSYNTLSIDSGSGSE  180

Query  180  DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG  239
            DDDARAI DTLGD+DAGLD+IE+RE LRPLLEALPERERTVLVLRFFDSMTQTQIAERVG
Sbjct  181  DDDARAIADTLGDMDAGLDRIEDRESLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG  240

Query  240  ISQMHVSRLLAKSLARLRDQLE  261
            ISQMHVSRLLAKSLARLRDQLE
Sbjct  241  ISQMHVSRLLAKSLARLRDQLE  262


>gi|296168913|ref|ZP_06850582.1| RNA polymerase sigma-F factor [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896382|gb|EFG76035.1| RNA polymerase sigma-F factor [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=262

 Score =  452 bits (1163),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 227/262 (87%), Positives = 244/262 (94%), Gaps = 1/262 (0%)

Query  1    VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60
            +T  AAGGS SR NEYADVP+MFREL  + AGS EFQR RDKIV+RCLPLADHIARRFEG
Sbjct  1    MTPPAAGGSVSRPNEYADVPDMFRELATVGAGSMEFQRQRDKIVERCLPLADHIARRFEG  60

Query  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120
            RGEPRDDL+QVARVGLVNA VRFDV  GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct  61   RGEPRDDLVQVARVGLVNAVVRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120

Query  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD  180
            KELHLRLGTATA+LSQRLGRAP+A+ELAAELGMDR EV+EGL+AGSSY+TLSIDSGGGSD
Sbjct  121  KELHLRLGTATAELSQRLGRAPTATELAAELGMDREEVVEGLVAGSSYNTLSIDSGGGSD  180

Query  181  -DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG  239
             D+ARAI DTLGDVD GLD+IE++E LRPLLEALPERERTVLVLRFF+SMTQTQIAERVG
Sbjct  181  EDEARAIADTLGDVDTGLDRIEDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVG  240

Query  240  ISQMHVSRLLAKSLARLRDQLE  261
            ISQMHVSRLLAKSL RLRDQL+
Sbjct  241  ISQMHVSRLLAKSLTRLRDQLQ  262


>gi|41409504|ref|NP_962340.1| RNA polymerase sigma factor SigF [Mycobacterium avium subsp. 
paratuberculosis K-10]
 gi|254776692|ref|ZP_05218208.1| RNA polymerase sigma factor SigF [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41398335|gb|AAS05956.1| SigF_2 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=262

 Score =  447 bits (1149),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 224/262 (86%), Positives = 241/262 (92%), Gaps = 1/262 (0%)

Query  1    VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60
            +TARAAGGS SR NEYADVP+MFREL      S EFQR RDKIV+RCLPLADHIARRFEG
Sbjct  1    MTARAAGGSVSRPNEYADVPDMFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEG  60

Query  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120
            RGEPRDDL+QVARVGLVNA VRFDV  GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct  61   RGEPRDDLVQVARVGLVNAVVRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120

Query  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-  179
            KELHLRLGTATADLSQRLGRAP+A+ELAAEL MDR EV+EGL+AGSSY+TLSIDSGGGS 
Sbjct  121  KELHLRLGTATADLSQRLGRAPTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSE  180

Query  180  DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG  239
            +++ RAI DTLGDVD GLD+IE++E LRPLLEALPERERTVLVLRFF+SMTQTQIAERVG
Sbjct  181  EEEVRAIADTLGDVDTGLDRIEDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVG  240

Query  240  ISQMHVSRLLAKSLARLRDQLE  261
            ISQMHVSRLLAKSL RLRDQL+
Sbjct  241  ISQMHVSRLLAKSLTRLRDQLQ  262


>gi|254819525|ref|ZP_05224526.1| RNA polymerase sigma factor SigF [Mycobacterium intracellulare 
ATCC 13950]
Length=262

 Score =  434 bits (1116),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 223/262 (86%), Positives = 241/262 (92%), Gaps = 1/262 (0%)

Query  1    VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60
            +T RAAGGS SR NEYADVP+MFREL  + A S E QR RDKIV+RCLPLADHIARRFEG
Sbjct  1    MTPRAAGGSVSRPNEYADVPDMFRELASVAADSMELQRQRDKIVERCLPLADHIARRFEG  60

Query  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120
            RGEPRDDL+QVARVGLVNA VRFDV  GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct  61   RGEPRDDLVQVARVGLVNAVVRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120

Query  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDS-GGGS  179
            KELHLRLGTATADLSQRLGRAP+A+ELAAEL MDR EV+EGL+AGSSY+TLSIDS GGG 
Sbjct  121  KELHLRLGTATADLSQRLGRAPTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGGE  180

Query  180  DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG  239
            +++ARAI DTLGDVD GLD+IE++E LRPLLEALPERERTVLVLRFF+SMTQTQIAERVG
Sbjct  181  EEEARAIADTLGDVDTGLDRIEDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVG  240

Query  240  ISQMHVSRLLAKSLARLRDQLE  261
            ISQMHVSRLLAKSL RLRDQL+
Sbjct  241  ISQMHVSRLLAKSLTRLRDQLQ  262


>gi|108798252|ref|YP_638449.1| RNA polymerase sigma factor SigF [Mycobacterium sp. MCS]
 gi|119867348|ref|YP_937300.1| RNA polymerase sigma factor SigF [Mycobacterium sp. KMS]
 gi|126433912|ref|YP_001069603.1| RNA polymerase sigma factor SigF [Mycobacterium sp. JLS]
 gi|108768671|gb|ABG07393.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
 gi|119693437|gb|ABL90510.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium 
sp. KMS]
 gi|126233712|gb|ABN97112.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium 
sp. JLS]
Length=263

 Score =  424 bits (1089),  Expect = 8e-117, Method: Compositional matrix adjust.
 Identities = 212/263 (81%), Positives = 236/263 (90%), Gaps = 2/263 (0%)

Query  1    VTARAAGGSASRAN-EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFE  59
            +T  +A GS+ R N EY+DV  MFREL GL   +P+FQR RD+IV+RCLPLADHIARRF+
Sbjct  1    MTPSSAQGSSPRQNSEYSDVAPMFRELQGLTPSTPQFQRQRDRIVERCLPLADHIARRFD  60

Query  60   GRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR  119
            GRGEPRDDL+QVARVGLVNA +RFDV  GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR
Sbjct  61   GRGEPRDDLVQVARVGLVNAVIRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR  120

Query  120  LKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS  179
            LKELHLRLG+ATA+LSQRLGRAP+ASELA ELGMDR EV+EGL+AGSSY+TLSIDSGG S
Sbjct  121  LKELHLRLGSATAELSQRLGRAPTASELAEELGMDRDEVVEGLVAGSSYNTLSIDSGGNS  180

Query  180  -DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERV  238
             ++DA AI DTLGDVD GLDQIENRE LRPLL ALPERER VL+LRFF+++TQTQIAERV
Sbjct  181  GNEDAPAIADTLGDVDLGLDQIENREALRPLLAALPERERMVLLLRFFENLTQTQIAERV  240

Query  239  GISQMHVSRLLAKSLARLRDQLE  261
            GISQMHVSRLLAKSL RLRDQL+
Sbjct  241  GISQMHVSRLLAKSLTRLRDQLQ  263


>gi|120402666|ref|YP_952495.1| RNA polymerase sigma factor SigF [Mycobacterium vanbaalenii PYR-1]
 gi|119955484|gb|ABM12489.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium 
vanbaalenii PYR-1]
Length=262

 Score =  420 bits (1079),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 208/247 (85%), Positives = 223/247 (91%), Gaps = 0/247 (0%)

Query  15   EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARV  74
            EYADV  MFREL  L  G+  FQR RD+IV+RCLPLADHIARRF+GRGEPRDDL+QVARV
Sbjct  16   EYADVAPMFRELAELEEGTAAFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVARV  75

Query  75   GLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADL  134
            GLVNA +RFDV  GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+L
Sbjct  76   GLVNAVIRFDVNAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL  135

Query  135  SQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVD  194
            SQRLGRAP+A+ELAAEL MDR EV+EGL+AGSSY+TLSIDSGG  ++DA AI DTLGDVD
Sbjct  136  SQRLGRAPTATELAAELEMDRDEVVEGLVAGSSYNTLSIDSGGSGNEDAPAIADTLGDVD  195

Query  195  AGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLA  254
              LDQIENRE LRPLL ALPERERTVL LRFF+SMTQTQIAERVGISQMHVSRLLAKSLA
Sbjct  196  LSLDQIENREALRPLLAALPERERTVLALRFFESMTQTQIAERVGISQMHVSRLLAKSLA  255

Query  255  RLRDQLE  261
            RLRDQLE
Sbjct  256  RLRDQLE  262


>gi|315445714|ref|YP_004078593.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
 gi|315264017|gb|ADU00759.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
Length=262

 Score =  419 bits (1076),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 210/248 (85%), Positives = 225/248 (91%), Gaps = 1/248 (0%)

Query  15   EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARV  74
            EY+DV +MFREL  L  GS  FQR RD+IV+RCLPLADHIARRF+GRGEPRDDL+QVARV
Sbjct  15   EYSDVADMFRELAELEEGSAAFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVARV  74

Query  75   GLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADL  134
            GLVNA +RFDV  GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+L
Sbjct  75   GLVNAVIRFDVNAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL  134

Query  135  SQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAITDTLGDV  193
            SQRLGRAP+ SELAAEL MDR EV+EGL+AGSSY+TLSIDSGGGS ++DA AI DTLGDV
Sbjct  135  SQRLGRAPTPSELAAELEMDRDEVVEGLVAGSSYNTLSIDSGGGSGNEDAPAIADTLGDV  194

Query  194  DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL  253
            D  LDQIENRE LRPLL ALPERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKSL
Sbjct  195  DLTLDQIENREALRPLLAALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSL  254

Query  254  ARLRDQLE  261
             RLRDQLE
Sbjct  255  TRLRDQLE  262


>gi|118470482|ref|YP_886176.1| RNA polymerase sigma factor SigF [Mycobacterium smegmatis str. 
MC2 155]
 gi|25396413|dbj|BAC24795.1| alternative sigma factor SigF [Mycobacterium smegmatis]
 gi|118171769|gb|ABK72665.1| RNA polymerase sigma-F factor [Mycobacterium smegmatis str. MC2 
155]
Length=250

 Score =  419 bits (1076),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 206/249 (83%), Positives = 227/249 (92%), Gaps = 0/249 (0%)

Query  13   ANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVA  72
             +EYADV +MFREL G   GSP + R R+KIV+RCLPLADHIARRF+GRGEPR+DL+QVA
Sbjct  2    TSEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVA  61

Query  73   RVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATA  132
            RVGLVNA  RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA
Sbjct  62   RVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATA  121

Query  133  DLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGD  192
            +LSQRLGRAP+ASELA EL MDR EV+EGL+AGSSY+TLSIDSGGG D++A AI DTLGD
Sbjct  122  ELSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTLSIDSGGGGDEEAPAIVDTLGD  181

Query  193  VDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKS  252
            +D GLDQI+NRE LRPLL +LPERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKS
Sbjct  182  LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKS  241

Query  253  LARLRDQLE  261
            LARLRDQL+
Sbjct  242  LARLRDQLQ  250


>gi|145225367|ref|YP_001136045.1| RNA polymerase sigma factor SigF [Mycobacterium gilvum PYR-GCK]
 gi|145217853|gb|ABP47257.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium 
gilvum PYR-GCK]
Length=262

 Score =  418 bits (1075),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 210/248 (85%), Positives = 225/248 (91%), Gaps = 1/248 (0%)

Query  15   EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARV  74
            EY+DV +MFREL  L  GS  FQR RD+IV+RCLPLADHIARRF+GRGEPRDDL+QVARV
Sbjct  15   EYSDVADMFRELAELEEGSAAFQRQRDRIVERCLPLADHIARRFDGRGEPRDDLVQVARV  74

Query  75   GLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADL  134
            GLVNA +RFDV  GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+L
Sbjct  75   GLVNAVIRFDVTAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL  134

Query  135  SQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAITDTLGDV  193
            SQRLGRAP+ SELAAEL MDR EV+EGL+AGSSY+TLSIDSGGGS ++DA AI DTLGDV
Sbjct  135  SQRLGRAPTPSELAAELEMDRDEVVEGLVAGSSYNTLSIDSGGGSGNEDAPAIADTLGDV  194

Query  194  DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL  253
            D  LDQIENRE LRPLL ALPERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKSL
Sbjct  195  DLTLDQIENREALRPLLAALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSL  254

Query  254  ARLRDQLE  261
             RLRDQLE
Sbjct  255  TRLRDQLE  262


>gi|333991745|ref|YP_004524359.1| RNA polymerase sigma factor SigF [Mycobacterium sp. JDM601]
 gi|333487713|gb|AEF37105.1| alternative RNA polymerase sigma factor SigF [Mycobacterium sp. 
JDM601]
Length=262

 Score =  415 bits (1066),  Expect = 4e-114, Method: Compositional matrix adjust.
 Identities = 206/262 (79%), Positives = 233/262 (89%), Gaps = 1/262 (0%)

Query  1    VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60
            +T  AA   +   +EY+DV +MFREL    +GS +F+  +DKIV+RCLPLADHIARRFEG
Sbjct  1    MTRGAARSGSQSGSEYSDVGDMFRELAHYESGSTDFRNRKDKIVERCLPLADHIARRFEG  60

Query  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120
            RGE RDDL+QVARVGLVNA  RFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL
Sbjct  61   RGELRDDLVQVARVGLVNAVTRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120

Query  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD  180
            KELHLRLG+ATADLSQRLGRAP+A+ELA EL M R EV+EGL+AGSSY+TLSIDSGG SD
Sbjct  121  KELHLRLGSATADLSQRLGRAPTATELARELEMSREEVVEGLVAGSSYNTLSIDSGGSSD  180

Query  181  -DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG  239
             DD R+I DTLGD+DAG+D+IE+RE LRPLL ALPERERTVL+LRFF+SMTQTQIAERVG
Sbjct  181  EDDVRSIADTLGDIDAGMDRIEDREALRPLLNALPERERTVLLLRFFESMTQTQIAERVG  240

Query  240  ISQMHVSRLLAKSLARLRDQLE  261
            ISQMHVSRLLAKSL++LRDQLE
Sbjct  241  ISQMHVSRLLAKSLSKLRDQLE  262


>gi|336459631|gb|EGO38566.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium 
subsp. paratuberculosis S397]
Length=241

 Score =  412 bits (1060),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 207/241 (86%), Positives = 222/241 (93%), Gaps = 1/241 (0%)

Query  22   MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV  81
            MFREL      S EFQR RDKIV+RCLPLADHIARRFEGRGEPRDDL+QVARVGLVNA V
Sbjct  1    MFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVV  60

Query  82   RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA  141
            RFDV  GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA
Sbjct  61   RFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA  120

Query  142  PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAITDTLGDVDAGLDQI  200
            P+A+ELAAEL MDR EV+EGL+AGSSY+TLSIDSGGGS +++ RAI DTLGDVD GLD+I
Sbjct  121  PTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSEEEEVRAIADTLGDVDTGLDRI  180

Query  201  ENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL  260
            E++E LRPLLEALPERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKSL RLRDQL
Sbjct  181  EDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLTRLRDQL  240

Query  261  E  261
            +
Sbjct  241  Q  241


>gi|118464372|ref|YP_883398.1| RNA polymerase sigma factor SigF [Mycobacterium avium 104]
 gi|118165659|gb|ABK66556.1| RNA polymerase sigma-F factor [Mycobacterium avium 104]
Length=241

 Score =  409 bits (1050),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 206/241 (86%), Positives = 221/241 (92%), Gaps = 1/241 (0%)

Query  22   MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV  81
            MFREL      S EFQR RDKIV+RCLPLADHIARRFEGRGEPRDDL+QVARVGLVNA V
Sbjct  1    MFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVV  60

Query  82   RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA  141
            RFDV  GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA
Sbjct  61   RFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA  120

Query  142  PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAITDTLGDVDAGLDQI  200
             +A+ELAAEL MDR EV+EGL+AGSSY+TLSIDSGGGS +++ RAI DTLGDVD GLD+I
Sbjct  121  HTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSEEEEVRAIADTLGDVDTGLDRI  180

Query  201  ENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL  260
            E++E LRPLLEALPERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKSL RLRDQL
Sbjct  181  EDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLTRLRDQL  240

Query  261  E  261
            +
Sbjct  241  Q  241


>gi|342861501|ref|ZP_08718148.1| RNA polymerase sigma factor SigF [Mycobacterium colombiense CECT 
3035]
 gi|342130990|gb|EGT84279.1| RNA polymerase sigma factor SigF [Mycobacterium colombiense CECT 
3035]
Length=229

 Score =  391 bits (1005),  Expect = 4e-107, Method: Compositional matrix adjust.
 Identities = 201/228 (89%), Positives = 216/228 (95%), Gaps = 1/228 (0%)

Query  35   EFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSF  94
            EFQR RDKIV+RCLPLADHIARRFEGRGEPRDDL+QVARVGLVNA VRFDV  GSDFVSF
Sbjct  2    EFQRQRDKIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVVRFDVDAGSDFVSF  61

Query  95   AVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAPSASELAAELGMD  154
            AVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAP+A+ELAAEL MD
Sbjct  62   AVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAPTATELAAELDMD  121

Query  155  RAEVIEGLLAGSSYHTLSIDS-GGGSDDDARAITDTLGDVDAGLDQIENREVLRPLLEAL  213
            R EV+EGL+AGSSY+TLSIDS GGG +++ARAI DTLGDVD GLD+IE++E LRPLLEAL
Sbjct  122  RDEVVEGLVAGSSYNTLSIDSGGGGEEEEARAIADTLGDVDTGLDRIEDQESLRPLLEAL  181

Query  214  PERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQLE  261
            PERERTVLVLRFF+SMTQTQIAERVGISQMHVSRLLAKSL RLRDQL+
Sbjct  182  PERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLTRLRDQLQ  229


>gi|226361251|ref|YP_002779029.1| RNA polymerase sigma factor SigF [Rhodococcus opacus B4]
 gi|226239736|dbj|BAH50084.1| RNA polymerase sigma factor SigF [Rhodococcus opacus B4]
Length=265

 Score =  330 bits (845),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 161/256 (63%), Positives = 199/256 (78%), Gaps = 0/256 (0%)

Query  5    AAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEP  64
            + G +A   +EY DV  +FR++  L    P   R RD +V RCLPLA+HIARRF+GRGE 
Sbjct  7    SGGHTARWPDEYQDVTALFRQMAALDEDDPRRSRLRDAVVTRCLPLAEHIARRFDGRGEA  66

Query  65   RDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELH  124
             DDL+QVAR+GLVN+  RFDV+ GSDFVSFAVPTIMGEVRRHFRD  W+V+VPRR+KELH
Sbjct  67   HDDLVQVARLGLVNSVDRFDVERGSDFVSFAVPTIMGEVRRHFRDTGWAVRVPRRMKELH  126

Query  125  LRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDAR  184
            L L  A A+LSQ LG AP+ SELA  L +++ EV +GLLAG++Y T+S+D+         
Sbjct  127  LALSQAVAELSQSLGHAPTVSELAEHLDLEQEEVAQGLLAGNAYQTVSVDNTSSDRAGEL  186

Query  185  AITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMH  244
            ++ +TLGD DA +D +EN E LRPLL++LPERERTVL+LRFF +MTQTQIA+RVGISQMH
Sbjct  187  SMVETLGDYDAAMDDVENHETLRPLLQSLPERERTVLMLRFFGNMTQTQIADRVGISQMH  246

Query  245  VSRLLAKSLARLRDQL  260
            VSRLLAK+LA LRDQL
Sbjct  247  VSRLLAKTLASLRDQL  262


>gi|111019111|ref|YP_702083.1| RNA polymerase sigma factor SigF [Rhodococcus jostii RHA1]
 gi|110818641|gb|ABG93925.1| sigma factor, sigma 70 type, group 3 [Rhodococcus jostii RHA1]
Length=265

 Score =  328 bits (842),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 160/256 (63%), Positives = 198/256 (78%), Gaps = 0/256 (0%)

Query  5    AAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEP  64
            + G +A   +EY DV  +F ++  L    P   R RD +V RCLPLA+HIARRF+GRGE 
Sbjct  7    SGGHTARWPDEYQDVTALFEQMAALDEDDPRRSRLRDAVVTRCLPLAEHIARRFDGRGEA  66

Query  65   RDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELH  124
             DDL+QVAR+GLVN+  RFDV+ GSDFVSFAVPTIMGEVRRHFRD  W+V+VPRR+KELH
Sbjct  67   HDDLVQVARLGLVNSVDRFDVERGSDFVSFAVPTIMGEVRRHFRDTGWAVRVPRRMKELH  126

Query  125  LRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDAR  184
            L L  A A+LSQ LG AP+ SELA  L +++ EV +GLLAG++Y T+S+D+         
Sbjct  127  LALSQAVAELSQSLGHAPTVSELAEHLDLEQEEVAQGLLAGNAYQTVSVDNTSSDRTGEL  186

Query  185  AITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMH  244
            ++ +TLGD DA +D +EN E LRPLL++LPERERTVL+LRFF +MTQTQIA+RVGISQMH
Sbjct  187  SMVETLGDYDAAMDDVENHETLRPLLQSLPERERTVLMLRFFGNMTQTQIADRVGISQMH  246

Query  245  VSRLLAKSLARLRDQL  260
            VSRLLAK+LA LRDQL
Sbjct  247  VSRLLAKTLASLRDQL  262


>gi|229490177|ref|ZP_04384024.1| RNA polymerase sigma-F factor [Rhodococcus erythropolis SK121]
 gi|229322925|gb|EEN88699.1| RNA polymerase sigma-F factor [Rhodococcus erythropolis SK121]
Length=264

 Score =  325 bits (834),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 159/264 (61%), Positives = 203/264 (77%), Gaps = 3/264 (1%)

Query  1    VTARAAGGSASR---ANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARR  57
            +TA A G S  R    +EY DV  +F EL  L   SPE++R R  ++ RCLPLA+HIARR
Sbjct  1    MTASADGPSRPRRRSTDEYRDVIPVFEELRTLEPHSPEYERVRTALITRCLPLAEHIARR  60

Query  58   FEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVP  117
            F+GRGE  DDL+QVAR+GLVNA  RFD   GSDFVSFAVPT+MGEVRRHFRD  W+++VP
Sbjct  61   FDGRGEAHDDLVQVARLGLVNAVDRFDSTRGSDFVSFAVPTVMGEVRRHFRDTGWALRVP  120

Query  118  RRLKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGG  177
            RR+KELH +LG A ++LSQ+LG AP+  ELA  LG++R EV + L+AG++Y T+S+D   
Sbjct  121  RRMKELHFQLGQAISELSQQLGHAPTVDELAETLGIEREEVAQALIAGNAYQTVSVDGAA  180

Query  178  GSDDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAER  237
             +  D   + +TLGD DA L+ +EN E LRPLL+ LPERERTVL+LRFF ++TQTQIAE+
Sbjct  181  SNHTDDLPLVETLGDYDAALENVENHEALRPLLDKLPERERTVLMLRFFGNLTQTQIAEK  240

Query  238  VGISQMHVSRLLAKSLARLRDQLE  261
            VG+SQMHVSRLLAK+L+ LR+QL+
Sbjct  241  VGVSQMHVSRLLAKTLSNLREQLD  264


>gi|226305067|ref|YP_002765025.1| RNA polymerase sigma factor SigF [Rhodococcus erythropolis PR4]
 gi|226184182|dbj|BAH32286.1| RNA polymerase sigma factor SigF [Rhodococcus erythropolis PR4]
Length=264

 Score =  325 bits (832),  Expect = 6e-87, Method: Compositional matrix adjust.
 Identities = 158/264 (60%), Positives = 203/264 (77%), Gaps = 3/264 (1%)

Query  1    VTARAAGGSASR---ANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARR  57
            +TA A G S  R    +EY DV  +F E+  L   SPE++R R  ++ RCLPLA+HIARR
Sbjct  1    MTASADGPSRPRRRSTDEYRDVIPVFEEMRTLEPHSPEYERVRTALITRCLPLAEHIARR  60

Query  58   FEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVP  117
            F+GRGE  DDL+QVAR+GLVNA  RFD   GSDFVSFAVPT+MGEVRRHFRD  W+++VP
Sbjct  61   FDGRGEAHDDLVQVARLGLVNAVDRFDSTRGSDFVSFAVPTVMGEVRRHFRDTGWALRVP  120

Query  118  RRLKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGG  177
            RR+KELH +LG A ++LSQ+LG AP+  ELA  LG++R EV + L+AG++Y T+S+D   
Sbjct  121  RRMKELHFQLGQAISELSQQLGHAPTVDELAETLGIEREEVAQALIAGNAYQTVSVDGAA  180

Query  178  GSDDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAER  237
             +  D   + +TLGD DA L+ +EN E LRPLL+ LPERERTVL+LRFF ++TQTQIAE+
Sbjct  181  SNHTDDLPLVETLGDYDAALENVENHEALRPLLDKLPERERTVLMLRFFGNLTQTQIAEK  240

Query  238  VGISQMHVSRLLAKSLARLRDQLE  261
            VG+SQMHVSRLLAK+L+ LR+QL+
Sbjct  241  VGVSQMHVSRLLAKTLSNLREQLD  264


>gi|315444787|ref|YP_004077666.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
 gi|315263090|gb|ADT99831.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
Length=270

 Score =  306 bits (784),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 152/245 (63%), Positives = 188/245 (77%), Gaps = 0/245 (0%)

Query  15   EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARV  74
            EY+DVP M R L  L   SPE++R  ++I+   LPLA H ARRF GRG+  DDL QVA V
Sbjct  7    EYSDVPNMIRALRQLDPASPEYRRLHERIIAMTLPLAQHTARRFRGRGQSHDDLFQVASV  66

Query  75   GLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADL  134
            GLVNA  RFD  +GSDF+++AVPTIMGEVRR+FRD SW+VKVPRRLK+L+ +L  A A+L
Sbjct  67   GLVNAVKRFDPDSGSDFLAYAVPTIMGEVRRYFRDCSWAVKVPRRLKDLNSQLAKARAEL  126

Query  135  SQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVD  194
            +Q+LGRAP+ SE+AA LG+DR EV++  +A S+Y TLS DS  G D D  A+ +TLG+ D
Sbjct  127  TQQLGRAPTPSEVAAHLGIDREEVVQATIASSNYATLSTDSTSGPDGDFVALRETLGEPD  186

Query  195  AGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLA  254
            A LD + + E +RPL+E LP RE+ VL LRFFD MTQTQIAER+G SQMHVSRLLAK+LA
Sbjct  187  ARLDAVVDNETIRPLIEKLPPREQAVLKLRFFDEMTQTQIAERMGYSQMHVSRLLAKALA  246

Query  255  RLRDQ  259
             LRDQ
Sbjct  247  TLRDQ  251


>gi|145224454|ref|YP_001135132.1| FliA/WhiG family RNA polymerase sigma factor [Mycobacterium gilvum 
PYR-GCK]
 gi|145216940|gb|ABP46344.1| RNA polymerase, sigma 37 subunit, RpsB/SigB [Mycobacterium gilvum 
PYR-GCK]
Length=270

 Score =  306 bits (784),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 152/245 (63%), Positives = 188/245 (77%), Gaps = 0/245 (0%)

Query  15   EYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARV  74
            EY+DVP M R L  L   SPE++R  ++I+   LPLA H ARRF GRG+  DDL QVA V
Sbjct  7    EYSDVPNMIRALRQLDPASPEYRRLHERIIAMTLPLAQHTARRFRGRGQSHDDLFQVASV  66

Query  75   GLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADL  134
            GLVNA  RFD  +GSDF+++AVPTIMGEVRR+FRD SW+VKVPRRLK+L+ +L  A A+L
Sbjct  67   GLVNAVKRFDPDSGSDFLAYAVPTIMGEVRRYFRDCSWAVKVPRRLKDLNSQLAKARAEL  126

Query  135  SQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVD  194
            +Q+LGRAP+ SE+AA LG+DR EV++  +A S+Y TLS DS  G D D  A+ +TLG+ D
Sbjct  127  TQQLGRAPTPSEVAAHLGIDREEVVQATIASSNYATLSTDSTSGPDGDFVALRETLGEPD  186

Query  195  AGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLA  254
            A LD + + E +RPL+E LP RE+ VL LRFFD MTQTQIAER+G SQMHVSRLLAK+LA
Sbjct  187  ARLDAVVDNETIRPLIEKLPPREQAVLKLRFFDEMTQTQIAERMGYSQMHVSRLLAKALA  246

Query  255  RLRDQ  259
             LRDQ
Sbjct  247  TLRDQ  251


>gi|257056691|ref|YP_003134523.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora 
viridis DSM 43017]
 gi|256586563|gb|ACU97696.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora 
viridis DSM 43017]
Length=266

 Score =  302 bits (773),  Expect = 3e-80, Method: Compositional matrix adjust.
 Identities = 154/257 (60%), Positives = 196/257 (77%), Gaps = 5/257 (1%)

Query  4    RAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGE  63
            + AGGSA     Y D+  +F  L  L    P+    R++I+ RCLPLA+HIARRF GRGE
Sbjct  13   KQAGGSAG----YEDLSPLFNALAALDPDDPQRVTLREEIITRCLPLAEHIARRFVGRGE  68

Query  64   PRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKEL  123
            PRDDL+QVAR+GL+NA  RFD   G++FV+FAVPTIMGEVRRHFRD+SW+V+VPRRLKEL
Sbjct  69   PRDDLVQVARLGLLNAIDRFDASRGTEFVAFAVPTIMGEVRRHFRDSSWAVRVPRRLKEL  128

Query  124  HLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDA  183
            HL L  A++ L+QRLGRAP+ SELAAELG+   +V +GLLAG++Y ++S+D+    D+  
Sbjct  129  HLSLSQASSKLAQRLGRAPTPSELAAELGLSPEDVWDGLLAGNAYQSVSMDA-AYDDEGT  187

Query  184  RAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQM  243
              + +T+G  D  L+ +E  E L+PLL +LPERER VL+LRFF +MTQTQIAERVGISQM
Sbjct  188  LPLAETVGHDDVELEHVEYHESLQPLLASLPERERRVLILRFFGNMTQTQIAERVGISQM  247

Query  244  HVSRLLAKSLARLRDQL  260
            HVSRLLA++L  LR QL
Sbjct  248  HVSRLLARTLEFLRSQL  264


>gi|256379368|ref|YP_003103028.1| SigB/F/G subfamily RNA polymerase sigma-28 subunit [Actinosynnema 
mirum DSM 43827]
 gi|255923671|gb|ACU39182.1| RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily [Actinosynnema 
mirum DSM 43827]
Length=268

 Score =  301 bits (772),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 153/258 (60%), Positives = 193/258 (75%), Gaps = 0/258 (0%)

Query  4    RAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGE  63
            +AA G +S   +Y  +  +F  L   PA  P  +R RD++V   LP+A HIARRF  RGE
Sbjct  10   KAASGKSSSQGDYDHLAPLFTRLAQTPASDPARERLRDELVTEHLPVARHIARRFGHRGE  69

Query  64   PRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKEL  123
            P DDL+QVA VGL+NA  RFD + GSDF+SFAVPTIMGEVR++FRD+SWSV++PRRLKEL
Sbjct  70   PHDDLVQVATVGLINAVDRFDPERGSDFLSFAVPTIMGEVRKYFRDSSWSVRMPRRLKEL  129

Query  124  HLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDA  183
            HL +   +A LSQ LGRAP+ SELA  LG+ R EV EGL AG++YH+ S+D    +DD +
Sbjct  130  HLAINAGSARLSQELGRAPTPSELAQHLGLSREEVHEGLAAGNAYHSASLDDLLVADDSS  189

Query  184  RAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQM  243
             ++  TLG+ D  L+ IE RE L PLLE LPERER ++V+RFF +MTQTQIA++VGISQM
Sbjct  190  ISLGSTLGEEDPELEAIEQRESLHPLLEKLPERERRIVVMRFFGNMTQTQIAQKVGISQM  249

Query  244  HVSRLLAKSLARLRDQLE  261
            HVSRLLAK+L +LRD LE
Sbjct  250  HVSRLLAKTLRQLRDGLE  267


>gi|257054261|ref|YP_003132093.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora 
viridis DSM 43017]
 gi|256584133|gb|ACU95266.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora 
viridis DSM 43017]
Length=267

 Score =  294 bits (752),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 145/260 (56%), Positives = 189/260 (73%), Gaps = 0/260 (0%)

Query  1    VTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG  60
            +T     GS + +++Y  +  +F E   L    P     RD++V   LPLA+HIA+RF G
Sbjct  1    MTESTTQGSRTPSDDYQHLTPLFEEFAALDPDDPRRAELRDRLVTGHLPLAEHIAQRFSG  60

Query  61   RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL  120
            RG  ++DL+QVARVGL+NA  RFD   GSDF+SFAVPT+MGEVRRHFRD  W ++VPRRL
Sbjct  61   RGVAKEDLVQVARVGLINAVDRFDPSRGSDFLSFAVPTVMGEVRRHFRDTGWVIRVPRRL  120

Query  121  KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSD  180
            KELHL +  A+  LSQRLGRAP+ SE+A  LG+   EV EGL AG++YH++S+D    +D
Sbjct  121  KELHLSINNASTQLSQRLGRAPTPSEIADHLGLTLEEVFEGLEAGNAYHSMSLDEVLSAD  180

Query  181  DDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI  240
             +  A+ DTLG+ DA L  +EN E L+PL++ LPERERT+L LRF  +MTQTQIAER+GI
Sbjct  181  TENLALGDTLGEEDAALAGVENHETLQPLVKQLPERERTILALRFVHNMTQTQIAERIGI  240

Query  241  SQMHVSRLLAKSLARLRDQL  260
            SQMHVSRLLA++L +LR+ L
Sbjct  241  SQMHVSRLLARTLKKLREGL  260


>gi|300787087|ref|YP_003767378.1| RNA polymerase sigma factor [Amycolatopsis mediterranei U32]
 gi|299796601|gb|ADJ46976.1| RNA polymerase sigma factor [Amycolatopsis mediterranei U32]
 gi|340528583|gb|AEK43788.1| RNA polymerase sigma factor [Amycolatopsis mediterranei S699]
Length=263

 Score =  293 bits (751),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 147/249 (60%), Positives = 184/249 (74%), Gaps = 0/249 (0%)

Query  12   RANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQV  71
            R +EYA    +F+EL  L    P     R K+V   LPLA+HIA RF GRGEPR+DL+QV
Sbjct  11   RPDEYAHCEPLFQELGSLDTADPRRDVVRSKLVTELLPLAEHIATRFSGRGEPREDLVQV  70

Query  72   ARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTAT  131
            AR+GL+NA  RFD   G DF+SFAVPTIMGEVRRHFRD  WSV+VPRRLKELHL L   +
Sbjct  71   ARIGLINAVDRFDPARGHDFLSFAVPTIMGEVRRHFRDTGWSVRVPRRLKELHLSLSQGS  130

Query  132  ADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLG  191
            A LSQRLGRAP+ +ELA  L +D  EV EGLLAG++Y  LS+D     D +A ++ DT+G
Sbjct  131  AVLSQRLGRAPTPTELAEHLNLDVDEVREGLLAGNAYQALSVDKPVHDDAEALSLADTMG  190

Query  192  DVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAK  251
            + D  +  +EN E L+PLL+ LP+RER +LV+RFF  +TQTQIA+RVGISQMHVSRLL++
Sbjct  191  EPDHEMAMVENHEALQPLLQELPKRERAILVMRFFGGLTQTQIADRVGISQMHVSRLLSQ  250

Query  252  SLARLRDQL  260
            +L +LR +L
Sbjct  251  TLEQLRGKL  259


>gi|325674546|ref|ZP_08154234.1| RNA polymerase sigma-F factor [Rhodococcus equi ATCC 33707]
 gi|325554806|gb|EGD24480.1| RNA polymerase sigma-F factor [Rhodococcus equi ATCC 33707]
Length=259

 Score =  291 bits (745),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 146/254 (58%), Positives = 186/254 (74%), Gaps = 1/254 (0%)

Query  9    SASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDL  68
            +  R +EY+DV  MF  L  L    P     R+ I+ RCLPLA+HIARRF+ RGEP +DL
Sbjct  5    TTDRPDEYSDVKPMFASLQALDENDPGHAELRESIITRCLPLAEHIARRFDRRGEPFEDL  64

Query  69   IQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG  128
            +QVA +GLVNA  R+DV+ GSDF++FAVPTIMGEVRRHFRD  W+V+VPRRLKELHL L 
Sbjct  65   VQVASIGLVNAVDRYDVERGSDFLAFAVPTIMGEVRRHFRDTGWAVRVPRRLKELHLDLV  124

Query  129  TATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAIT  187
              +A LSQRLGR+P+  E+A ELG++  EV +GL A + Y  LS+D+  GS  D    + 
Sbjct  125  KTSAQLSQRLGRSPTTREMAEELGIEVEEVAQGLQAANGYQALSVDAAAGSGPDTGSTLG  184

Query  188  DTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSR  247
            D LGD D+ +  +E+ E LR +LE LPERERTVL+LRFF + TQ+QIA  VG+SQMHVSR
Sbjct  185  DLLGDNDSDIAGVEDHETLRVVLEGLPERERTVLLLRFFGNQTQSQIAAHVGVSQMHVSR  244

Query  248  LLAKSLARLRDQLE  261
            +L+ +LARLR Q+E
Sbjct  245  ILSDTLARLRAQVE  258


>gi|312139980|ref|YP_004007316.1| sigma-70 factor sigf [Rhodococcus equi 103S]
 gi|311889319|emb|CBH48635.1| sigma-70 factor SigF [Rhodococcus equi 103S]
Length=259

 Score =  290 bits (743),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 146/254 (58%), Positives = 185/254 (73%), Gaps = 1/254 (0%)

Query  9    SASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDL  68
            +  R +EY+DV  MF  L  L    P     R+ I+ RCLPLA HIARRF+ RGEP +DL
Sbjct  5    TTDRPDEYSDVKPMFASLQALDENEPGHAELRESIITRCLPLAQHIARRFDRRGEPFEDL  64

Query  69   IQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG  128
            +QVA +GLVNA  R+DV+ GSDF++FAVPTIMGEVRRHFRD  W+V+VPRRLKELHL L 
Sbjct  65   VQVASIGLVNAVDRYDVERGSDFLAFAVPTIMGEVRRHFRDTGWAVRVPRRLKELHLDLV  124

Query  129  TATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGS-DDDARAIT  187
              +A LSQRLGR+P+  E+A ELG++  EV +GL A + Y  LS+D+  GS  D    + 
Sbjct  125  KTSAQLSQRLGRSPTTREMAEELGIEVEEVAQGLQAANGYQALSVDAAAGSGPDTGSTLG  184

Query  188  DTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSR  247
            D LGD D+ +  +E+ E LR +LE LPERERTVL+LRFF + TQ+QIA  VG+SQMHVSR
Sbjct  185  DLLGDNDSDIAGVEDHETLRVVLEGLPERERTVLLLRFFGNQTQSQIAAHVGVSQMHVSR  244

Query  248  LLAKSLARLRDQLE  261
            +L+ +LARLR Q+E
Sbjct  245  ILSDTLARLRAQVE  258


>gi|54025575|ref|YP_119817.1| putative sigma factor [Nocardia farcinica IFM 10152]
 gi|54017083|dbj|BAD58453.1| putative sigma factor [Nocardia farcinica IFM 10152]
Length=315

 Score =  289 bits (739),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 141/244 (58%), Positives = 190/244 (78%), Gaps = 2/244 (0%)

Query  16   YADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVG  75
            Y D+P++F  L  +  G+ E    RD+++ RC+PLADHIAR+F GRGEP DDL QVARVG
Sbjct  68   YDDLPDLFDRLAAVEPGTAEHAALRDELISRCVPLADHIARKFSGRGEPFDDLTQVARVG  127

Query  76   LVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLS  135
            LV+A  RFD   GS+F+SFAVPTIMGEVRR+FRD++W+++VPRR+KE HLR+G A   LS
Sbjct  128  LVHAVDRFDPARGSNFLSFAVPTIMGEVRRYFRDHTWAMRVPRRVKETHLRIGAAIDTLS  187

Query  136  QRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGG-GSDDDARAITDTLGDVD  194
            Q LGR+P+A E+AAEL +D  EV + ++AG++Y   SID+   G + DA ++ DTLG+ +
Sbjct  188  QSLGRSPTAKEIAAELRVDPDEVTQAVIAGNAYQPSSIDAAALGRESDA-SLLDTLGEEE  246

Query  195  AGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLA  254
            A  +++E    +RPLL  LPERER +L +RFF+SMTQTQIA+++GISQMHVSR+LAK+LA
Sbjct  247  AQFERVEEYVAIRPLLAGLPERERRILTMRFFESMTQTQIAKQMGISQMHVSRILAKTLA  306

Query  255  RLRD  258
            RLR+
Sbjct  307  RLRE  310


>gi|108799863|ref|YP_640060.1| RNA polymerase sigma factor SigF [Mycobacterium sp. MCS]
 gi|119868973|ref|YP_938925.1| RNA polymerase sigma factor SigF [Mycobacterium sp. KMS]
 gi|126435506|ref|YP_001071197.1| RNA polymerase sigma factor SigF [Mycobacterium sp. JLS]
 gi|108770282|gb|ABG09004.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
 gi|119695062|gb|ABL92135.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium 
sp. KMS]
 gi|126235306|gb|ABN98706.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium 
sp. JLS]
Length=269

 Score =  289 bits (739),  Expect = 3e-76, Method: Compositional matrix adjust.
 Identities = 145/251 (58%), Positives = 190/251 (76%), Gaps = 1/251 (0%)

Query  9    SASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDL  68
            S    ++Y DVP+MFR L  L  G+P+  R R++IV RCLPLADHIA R+  +GE  DDL
Sbjct  16   STRTQDDYTDVPDMFRLLSVLSPGTPDHDRQRERIVTRCLPLADHIAFRYHRKGENLDDL  75

Query  69   IQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG  128
            +Q+ARVGL++A  RFD + G++F+SFAVPT++GE+RRHFRDN W++ VPRRLK+LH+++ 
Sbjct  76   VQIARVGLMHAVNRFDPENGANFLSFAVPTMLGEIRRHFRDNGWAMHVPRRLKDLHVQIT  135

Query  129  TATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHT-LSIDSGGGSDDDARAIT  187
             AT  L+Q LGR P+ ++LAAELG DR EV+E L+AG +Y           SDD  R++ 
Sbjct  136  RATPRLTQSLGRPPTPTDLAAELGADRQEVVECLVAGDAYSLRSIDSPISSSDDTTRSLA  195

Query  188  DTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSR  247
            DTLG+VD  ++ I +RE LRPLL AL ERERTV+ LRFF SMTQTQIAER+G+SQM VSR
Sbjct  196  DTLGEVDGEMEHITDRESLRPLLAALTERERTVISLRFFASMTQTQIAERIGVSQMQVSR  255

Query  248  LLAKSLARLRD  258
            +LAK+L +LRD
Sbjct  256  ILAKTLQQLRD  266


>gi|41407572|ref|NP_960408.1| RNA polymerase sigma factor SigF [Mycobacterium avium subsp. 
paratuberculosis K-10]
 gi|41395925|gb|AAS03791.1| SigF_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336457627|gb|EGO36631.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium 
subsp. paratuberculosis S397]
Length=269

 Score =  288 bits (737),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 144/262 (55%), Positives = 192/262 (74%), Gaps = 2/262 (0%)

Query  2    TARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGR  61
            T  AA  ++   + Y DV EMF EL  +PA S E++R R++IV RCLPLADH+A  F  R
Sbjct  8    TPTAARPTSQSDDSYEDVVEMFLELRRMPAESHEYRRQRERIVARCLPLADHVASHFARR  67

Query  62   GEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLK  121
            GE  DDL+QVAR+GL+NA  RFD   G  F+ FAVPT+MGEVRR+FRD SW ++VPRRL+
Sbjct  68   GEGLDDLVQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLR  127

Query  122  ELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDD  181
            ELH+++   TADL+Q+LGRAP+A EL+  L + R E++E L+AG +Y   S+D+  G+D 
Sbjct  128  ELHVQISRTTADLAQQLGRAPNAGELSQVLEVPREEIVECLVAGDAYRLDSLDAPQGADS  187

Query  182  DA--RAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG  239
                R++ D++GD+D  ++ I NRE LR L+  LP RER VL +RFF+SMTQ+QIAER+G
Sbjct  188  SGTPRSVADSVGDIDPQIEHITNREALRVLVATLPHREREVLRMRFFESMTQSQIAERIG  247

Query  240  ISQMHVSRLLAKSLARLRDQLE  261
            +SQM VSR+LA +L  LRDQLE
Sbjct  248  VSQMQVSRILANTLRCLRDQLE  269


>gi|315444786|ref|YP_004077665.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
 gi|315263089|gb|ADT99830.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
Length=284

 Score =  288 bits (737),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 146/258 (57%), Positives = 192/258 (75%), Gaps = 2/258 (0%)

Query  5    AAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEP  64
            A   S  + + Y DV +MFREL  L   S  F+R R+ I+ RCLPLADHIARRF GRGE 
Sbjct  19   ARTASPRKRDGYDDVLDMFRELAVLDRDSAAFRRQREAIIARCLPLADHIARRFRGRGEG  78

Query  65   RDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELH  124
             +DL+QVARVGL+NA  RFDV + +DF++FAVPT+MGEVRR+FRD+ WS+KVPRRLKEL+
Sbjct  79   HEDLVQVARVGLLNAVNRFDVDSANDFLAFAVPTMMGEVRRYFRDHGWSLKVPRRLKELN  138

Query  125  LRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSID--SGGGSDDD  182
            +RL  A ADL+Q L RAP+ SELA  LG+DR EV+EGL+A ++Y T S +  +    D +
Sbjct  139  VRLNAARADLTQELNRAPTPSELAKYLGIDREEVVEGLVAANAYSTRSTEQPTTFSGDGE  198

Query  183  ARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQ  242
              ++ DT G  D  + ++ +   ++PLL ALPER+R VL LRFF+  TQ+QIAE++G+SQ
Sbjct  199  GLSLQDTFGAPDDNIQKVIDVNTVQPLLAALPERDRLVLKLRFFEDRTQSQIAEQIGVSQ  258

Query  243  MHVSRLLAKSLARLRDQL  260
            MHVSRLLA++LA LRDQ+
Sbjct  259  MHVSRLLARALATLRDQV  276


>gi|118465934|ref|YP_882149.1| RNA polymerase sigma factor SigF [Mycobacterium avium 104]
 gi|118167221|gb|ABK68118.1| RNA polymerase sigma-F factor [Mycobacterium avium 104]
Length=269

 Score =  288 bits (736),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 144/262 (55%), Positives = 191/262 (73%), Gaps = 2/262 (0%)

Query  2    TARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGR  61
            T  AA  +    + Y DV EMF EL  +PA S E++R R++IV RCLPLADH+A  F  R
Sbjct  8    TPTAARPTTQSDDSYEDVVEMFLELRRMPAESHEYRRQRERIVARCLPLADHVASHFARR  67

Query  62   GEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLK  121
            GE  DDL+QVAR+GL+NA  RFD   G  F+ FAVPT+MGEVRR+FRD SW ++VPRRL+
Sbjct  68   GEGLDDLVQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLR  127

Query  122  ELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDD  181
            ELH+++   TADL+Q+LGRAP+A EL+  L + R E++E L+AG +Y   S+D+  G+D 
Sbjct  128  ELHVQISRTTADLAQQLGRAPNAGELSQVLEVPREEIVECLVAGDAYRLDSLDAPQGADS  187

Query  182  DA--RAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG  239
                R++ D++GD+D  ++ I NRE LR L+  LP RER VL +RFF+SMTQ+QIAER+G
Sbjct  188  SGTPRSVADSVGDIDPQIEHITNREALRVLVATLPHREREVLRMRFFESMTQSQIAERIG  247

Query  240  ISQMHVSRLLAKSLARLRDQLE  261
            +SQM VSR+LA +L  LRDQLE
Sbjct  248  VSQMQVSRILANTLRCLRDQLE  269


>gi|145224453|ref|YP_001135131.1| FliA/WhiG family RNA polymerase sigma factor [Mycobacterium gilvum 
PYR-GCK]
 gi|145216939|gb|ABP46343.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Mycobacterium 
gilvum PYR-GCK]
Length=342

 Score =  288 bits (736),  Expect = 8e-76, Method: Compositional matrix adjust.
 Identities = 146/258 (57%), Positives = 192/258 (75%), Gaps = 2/258 (0%)

Query  5    AAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEP  64
            A   S  + + Y DV +MFREL  L   S  F+R R+ I+ RCLPLADHIARRF GRGE 
Sbjct  77   ARTASPRKRDGYDDVLDMFRELAVLDRDSAAFRRQREAIIARCLPLADHIARRFRGRGEG  136

Query  65   RDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELH  124
             +DL+QVARVGL+NA  RFDV + +DF++FAVPT+MGEVRR+FRD+ WS+KVPRRLKEL+
Sbjct  137  HEDLVQVARVGLLNAVNRFDVDSANDFLAFAVPTMMGEVRRYFRDHGWSLKVPRRLKELN  196

Query  125  LRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSID--SGGGSDDD  182
            +RL  A ADL+Q L RAP+ SELA  LG+DR EV+EGL+A ++Y T S +  +    D +
Sbjct  197  VRLNAARADLTQELNRAPTPSELAKYLGIDREEVVEGLVAANAYSTRSTEQPTTFSGDGE  256

Query  183  ARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQ  242
              ++ DT G  D  + ++ +   ++PLL ALPER+R VL LRFF+  TQ+QIAE++G+SQ
Sbjct  257  GLSLQDTFGAPDDNIQKVIDVNTVQPLLAALPERDRLVLKLRFFEDRTQSQIAEQIGVSQ  316

Query  243  MHVSRLLAKSLARLRDQL  260
            MHVSRLLA++LA LRDQ+
Sbjct  317  MHVSRLLARALATLRDQV  334


>gi|342861346|ref|ZP_08717994.1| RNA polymerase sigma factor SigF [Mycobacterium colombiense CECT 
3035]
 gi|342131246|gb|EGT84527.1| RNA polymerase sigma factor SigF [Mycobacterium colombiense CECT 
3035]
Length=273

 Score =  286 bits (733),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 145/261 (56%), Positives = 192/261 (74%), Gaps = 3/261 (1%)

Query  4    RAAGGSASRANE-YADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRG  62
            R A    +R ++ Y DV EMF  L  LPA S E+   R++IV RCLPLADH+A  F  RG
Sbjct  13   RPAPPPTTRTDDSYDDVVEMFLTLQRLPAESHEYAHQRERIVSRCLPLADHVASHFARRG  72

Query  63   EPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKE  122
            E  +DLIQVAR+GL+NA  RFD   G  F+ FAVPT+MGEVRR+FRD SW ++VPRRL+E
Sbjct  73   EGLEDLIQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLRE  132

Query  123  LHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDD  182
            LH+++  ATADLSQ+LGRAP+A EL+  L + R E++E L+AG +Y   S+D+  G+D  
Sbjct  133  LHVQISRATADLSQQLGRAPTAGELSQMLEVPREEIVECLVAGDAYRLDSLDAPLGADSS  192

Query  183  A--RAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGI  240
               R++ D++GD+D  ++ I NRE LR L+  LP+RER VL +RFF+SMTQ+QIAER+G+
Sbjct  193  GTPRSVADSVGDIDPQIEHITNREALRVLVATLPQREREVLRMRFFESMTQSQIAERIGV  252

Query  241  SQMHVSRLLAKSLARLRDQLE  261
            SQM VSR+LA +L+ LRDQLE
Sbjct  253  SQMQVSRILASTLSSLRDQLE  273


>gi|120403519|ref|YP_953348.1| FliA/WhiG family RNA polymerase sigma factor [Mycobacterium vanbaalenii 
PYR-1]
 gi|119956337|gb|ABM13342.1| RNA polymerase, sigma 37 subunit, RpsB/SigB [Mycobacterium vanbaalenii 
PYR-1]
Length=242

 Score =  285 bits (730),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 139/241 (58%), Positives = 189/241 (79%), Gaps = 2/241 (0%)

Query  22   MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV  81
            MFREL  L  GS  ++R RD I++RCLPLADHIARRF GRGE  +DL+QVARVGL+NA  
Sbjct  1    MFRELALLDEGSAPYRRQRDAIIERCLPLADHIARRFRGRGEAHEDLVQVARVGLLNAVN  60

Query  82   RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA  141
            RFDV + +DF++FAVPT+MGEVRR+FRD+ WS+KVPRRLKEL++RL +A ++L+ +L RA
Sbjct  61   RFDVDSANDFLAFAVPTMMGEVRRYFRDHGWSLKVPRRLKELNVRLNSARSELTHQLNRA  120

Query  142  PSASELAAELGMDRAEVIEGLLAGSSYHTLSI--DSGGGSDDDARAITDTLGDVDAGLDQ  199
            P+ SELA  LGM+R E++EGL+A ++Y T S   ++    D D   + DT+G  D G+ +
Sbjct  121  PTPSELAEFLGMERDEIVEGLVAANAYSTRSTEQETMRTGDGDGLTLLDTIGGPDEGIQR  180

Query  200  IENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQ  259
            + + + ++PLL  LP R+R VL LRFFD++TQ+QIAER+G+SQMHVSRLLA++LA LR+Q
Sbjct  181  VIDIQTVQPLLAKLPARDRLVLQLRFFDNLTQSQIAERIGVSQMHVSRLLARALATLREQ  240

Query  260  L  260
            +
Sbjct  241  I  241


>gi|169629597|ref|YP_001703246.1| RNA polymerase sigma factor SigF [Mycobacterium abscessus ATCC 
19977]
 gi|169241564|emb|CAM62592.1| Alternative sigma factor SigF [Mycobacterium abscessus]
Length=272

 Score =  284 bits (726),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 138/248 (56%), Positives = 187/248 (76%), Gaps = 1/248 (0%)

Query  14   NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR  73
            ++YADVP+MFR L GL   S  +QR  ++IV RCLPLAD++AR F+ RGE  +DLIQVAR
Sbjct  24   DDYADVPDMFRSLAGLAEHSDAYQRKHEEIVTRCLPLADNVARHFDRRGEDLEDLIQVAR  83

Query  74   VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD  133
            VGL+NA  RFD + G+ F+ FAVPT+MGEVRRHFRD+ WS+ VPR +++ H ++  ATA+
Sbjct  84   VGLLNAVNRFDPEKGASFLGFAVPTMMGEVRRHFRDHGWSLHVPRAIRDRHAQISRATAE  143

Query  134  LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSG-GGSDDDARAITDTLGD  192
            L+Q L RAP+A ELAAELG+DR EV+E L+A  +Y   SI++     D +++ ++D LG+
Sbjct  144  LTQELQRAPTAGELAAELGIDREEVVESLIAADAYQPQSIEAPLSHGDQESKHLSDLLGN  203

Query  193  VDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKS  252
             D  L+ + NRE +RPLL  LP RERTVL LRFF  MTQ+QIA ++G+SQMHVSR+L+ +
Sbjct  204  EDPALEHVTNREAVRPLLANLPLRERTVLELRFFKGMTQSQIAAQIGVSQMHVSRILSDT  263

Query  253  LARLRDQL  260
            L  LR+Q+
Sbjct  264  LRYLREQM  271


>gi|229492301|ref|ZP_04386108.1| RNA polymerase sigma-F factor [Rhodococcus erythropolis SK121]
 gi|229320710|gb|EEN86524.1| RNA polymerase sigma-F factor [Rhodococcus erythropolis SK121]
Length=260

 Score =  282 bits (722),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 135/249 (55%), Positives = 178/249 (72%), Gaps = 0/249 (0%)

Query  12   RANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQV  71
            + ++Y    E+F  +  LP   P  ++    I++ CLPLA H+ARR++GRG+P +DL QV
Sbjct  8    KKDQYETAVELFVSMASLPPNDPSREKITTSIIELCLPLATHVARRYQGRGQPFEDLEQV  67

Query  72   ARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTAT  131
            ARVGL+ A  RFDV  GSDF+SFAVPT+MGEVR+HFRD+ WSV+VPR L+E HL L  A 
Sbjct  68   ARVGLIQAVQRFDVDKGSDFLSFAVPTVMGEVRKHFRDHGWSVRVPRSLQERHLALNRAL  127

Query  132  ADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLG  191
              LSQ LGRAP+ +ELA EL ++  EV +GL AG+SY T  +D+    D     + DTLG
Sbjct  128  TTLSQTLGRAPTVAELAKELDIEPDEVEQGLTAGNSYRTTPLDTASAGDGSGLTLIDTLG  187

Query  192  DVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAK  251
              D  + +I+N E LRP L ALPERERT++VLRFF  +TQ+QIAE+VGISQMHVSR+L +
Sbjct  188  QYDEAISRIDNHETLRPALLALPERERTIVVLRFFGHLTQSQIAEKVGISQMHVSRILTQ  247

Query  252  SLARLRDQL  260
            SL +LR ++
Sbjct  248  SLKQLRTEM  256


>gi|226304764|ref|YP_002764722.1| RNA polymerase sigma factor [Rhodococcus erythropolis PR4]
 gi|226183879|dbj|BAH31983.1| RNA polymerase sigma factor [Rhodococcus erythropolis PR4]
Length=272

 Score =  280 bits (717),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 134/249 (54%), Positives = 179/249 (72%), Gaps = 0/249 (0%)

Query  12   RANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQV  71
            + ++Y    E+F  +  LP   P  ++  + I++ CLPLA H+ARR++GRG+P +DL QV
Sbjct  20   KKDQYELAVELFVSMASLPPDDPTREKITNSIIELCLPLATHVARRYQGRGQPFEDLEQV  79

Query  72   ARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTAT  131
            ARVGLV A  RFDV  GSDF+SFAVPT+MGEVR+HFRD+ WSV+VPR L+E HL L  A 
Sbjct  80   ARVGLVQAVQRFDVDKGSDFLSFAVPTVMGEVRKHFRDHGWSVRVPRSLQERHLALNRAL  139

Query  132  ADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLG  191
              LSQ LGRAP+ +ELA EL ++  EV +GL AG+SY T  +D+    D     + DTLG
Sbjct  140  TSLSQTLGRAPTVAELATELDIEPDEVEQGLTAGNSYRTTPLDTASAGDGSGLTLIDTLG  199

Query  192  DVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAK  251
              D  + +I+N E LRP L ALPERERT++VLRFF  +TQ+QIAE++GISQMHVSR+L +
Sbjct  200  QYDEAISRIDNHETLRPALLALPERERTIVVLRFFGHLTQSQIAEKIGISQMHVSRILTQ  259

Query  252  SLARLRDQL  260
            +L +LR ++
Sbjct  260  TLKQLRTEM  268


>gi|302527791|ref|ZP_07280133.1| RNA polymerase sigma-F factor [Streptomyces sp. AA4]
 gi|302436686|gb|EFL08502.1| RNA polymerase sigma-F factor [Streptomyces sp. AA4]
Length=243

 Score =  280 bits (716),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 143/239 (60%), Positives = 180/239 (76%), Gaps = 0/239 (0%)

Query  22   MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV  81
            MF EL  LPA  P   R R+++V   LP+A+HIA RF GRGEPR+DL+QVAR+GL+NA  
Sbjct  1    MFEELAALPADDPRRPRLRERLVTEFLPVAEHIATRFTGRGEPREDLVQVARIGLINAID  60

Query  82   RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA  141
            RF    G DF+SFAVPTIMGE+RR+FRD  WSV+VPRRLKELHL L   +A LSQ LGRA
Sbjct  61   RFTPDRGPDFLSFAVPTIMGEIRRYFRDTGWSVRVPRRLKELHLSLSRGSATLSQTLGRA  120

Query  142  PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVDAGLDQIE  201
            P+ +ELA  LG++ +EV EGL+AG +Y TLS+D     D +   + DTLG  D  ++ IE
Sbjct  121  PTPTELAEHLGLELSEVHEGLVAGHAYQTLSVDKPVHDDAEPLLLADTLGSDDPEIEHIE  180

Query  202  NREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL  260
            N E L+PLL  LP+RER +LV+RFF  +TQTQIAE+VGISQMHVSRLL+++L +LRD+L
Sbjct  181  NHEALQPLLRELPKRERAILVMRFFGGLTQTQIAEQVGISQMHVSRLLSQTLEQLRDKL  239


>gi|262204122|ref|YP_003275330.1| RNA polymerase sigma-70 factor, sigma-B/F/G subfamily [Gordonia 
bronchialis DSM 43247]
 gi|262087469|gb|ACY23437.1| RNA polymerase sigma-70 factor, sigma-B/F/G subfamily [Gordonia 
bronchialis DSM 43247]
Length=276

 Score =  278 bits (712),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 145/254 (58%), Positives = 185/254 (73%), Gaps = 2/254 (0%)

Query  7    GGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRD  66
            G  A   ++YADV    REL      +    + RD I++RCLPLA+H+A RF  RGEP D
Sbjct  16   GTGARHGDDYADVVAALRELSA-ETDAAAHAKKRDNIIERCLPLAEHVAWRFSDRGEPFD  74

Query  67   DLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLR  126
            DL+QVAR+G+VNA  RFD + G  F+SFAVPT+MGEVRRHFRD+ W+++VPRR KE  L 
Sbjct  75   DLLQVARIGVVNAVDRFDGERGDSFLSFAVPTVMGEVRRHFRDSMWAIRVPRRAKETSLS  134

Query  127  LGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAI  186
            +G AT +L QRLGR+P  SELAA LG+   EVI+GLLA S+Y   SID+    DDD R+I
Sbjct  135  IGKATDELVQRLGRSPRPSELAAHLGLPVDEVIDGLLARSAYQARSIDA-TPEDDDGRSI  193

Query  187  TDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVS  246
             DTLGD DA L QI+    LRP+L+ LP+RER ++ LRFF +M+Q++IA RVGISQMHVS
Sbjct  194  RDTLGDDDARLAQIDEFVTLRPVLDQLPDREREIVTLRFFHAMSQSEIAARVGISQMHVS  253

Query  247  RLLAKSLARLRDQL  260
            RLL+++L  LR+QL
Sbjct  254  RLLSRTLETLREQL  267


>gi|254775435|ref|ZP_05216951.1| RNA polymerase sigma factor SigF [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=242

 Score =  278 bits (712),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 137/242 (57%), Positives = 182/242 (76%), Gaps = 2/242 (0%)

Query  22   MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV  81
            MF EL  +PA S E++R R++IV RCLPLADH+A  F  RGE  DDL+QVAR+GL+NA  
Sbjct  1    MFLELRRMPAESHEYRRQRERIVARCLPLADHVASHFARRGEGLDDLVQVARLGLMNAVN  60

Query  82   RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA  141
            RFD   G  F+ FAVPT+MGEVRR+FRD SW ++VPRRL+ELH+++   TADL+Q+LGRA
Sbjct  61   RFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLRELHVQISRTTADLAQQLGRA  120

Query  142  PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDA--RAITDTLGDVDAGLDQ  199
            P+A EL+  L + R E++E L+AG +Y   S+D+  G+D     R++ D++GD+D  ++ 
Sbjct  121  PNAGELSQVLEVPREEIVECLVAGDAYRLDSLDAPQGADSSGTPRSVADSVGDIDPQIEH  180

Query  200  IENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQ  259
            I NRE LR L+  LP RER VL +RFF+SMTQ+QIAER+G+SQM VSR+LA +L  LRDQ
Sbjct  181  ITNREALRVLVATLPHREREVLRMRFFESMTQSQIAERIGVSQMQVSRILANTLRCLRDQ  240

Query  260  LE  261
            LE
Sbjct  241  LE  242


>gi|302528260|ref|ZP_07280602.1| RNA polymerase sigma-B factor [Streptomyces sp. AA4]
 gi|302437155|gb|EFL08971.1| RNA polymerase sigma-B factor [Streptomyces sp. AA4]
Length=261

 Score =  277 bits (709),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 140/250 (56%), Positives = 187/250 (75%), Gaps = 0/250 (0%)

Query  11   SRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQ  70
            +R ++Y     +F E+  L   + E  R R ++++  LPLA+HIARRF  RG+P +DL+Q
Sbjct  4    TRRDDYRHYAALFEEISHLAEDTDEHSRLRRRLIEEHLPLAEHIARRFARRGQPTEDLLQ  63

Query  71   VARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTA  130
            VAR+GL+NA  R+D    +DFV+FAVPT+MGEVRR+FRD++WSV+VPRRLKELHL +G A
Sbjct  64   VARIGLINAVDRYDPARQTDFVAFAVPTVMGEVRRYFRDHTWSVRVPRRLKELHLTVGQA  123

Query  131  TADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTL  190
              +L QRLGRAP+A ELA  L +D  EV E L AG++Y   SID     D  + A+ DTL
Sbjct  124  ATELGQRLGRAPTARELADHLDLDLDEVAEALHAGNAYQASSIDYPAHDDSGSVALADTL  183

Query  191  GDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLA  250
            GD D  ++++E+RE L+PLL +LPERER +LV+RFF +MTQ+QIAERVG+SQM VSRLLA
Sbjct  184  GDEDPEIEKLEDRETLKPLLRSLPERERAILVMRFFSNMTQSQIAERVGLSQMQVSRLLA  243

Query  251  KSLARLRDQL  260
            ++L+ LRDQL
Sbjct  244  RTLSTLRDQL  253


>gi|296164736|ref|ZP_06847300.1| RNA polymerase sigma-F factor [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295899907|gb|EFG79349.1| RNA polymerase sigma-F factor [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=288

 Score =  275 bits (703),  Expect = 6e-72, Method: Compositional matrix adjust.
 Identities = 136/250 (55%), Positives = 183/250 (74%), Gaps = 2/250 (0%)

Query  14   NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR  73
            + Y DV +MF +L  +PA S E+ R R++IV RCLPLADH+A  F  RGE  DDL+QVAR
Sbjct  39   DSYDDVVDMFVQLRTMPAESHEYARQRERIVARCLPLADHVASHFARRGEGLDDLVQVAR  98

Query  74   VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD  133
            +GL+NA  RFD   G  F+ FAVPT+MGEVRR+FRD SW ++VPRRL+ELH+++   T D
Sbjct  99   LGLMNAVNRFDPDKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLRELHVQISRTTGD  158

Query  134  LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDA--RAITDTLG  191
            L+Q+LGRAP+A EL+  L +   E++E L+AG +Y   S+D+  G+D     R + D +G
Sbjct  159  LAQKLGRAPTAGELSRALEVPHEEIVECLVAGDAYRLDSLDAPMGTDSSGTPRLVADAVG  218

Query  192  DVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAK  251
             +D  ++ I NRE LR L+ ALPERER VL +RFF+SMTQ+QIAER+G+SQM VSR+LA 
Sbjct  219  GIDPQIEHITNREALRVLVAALPEREREVLRMRFFESMTQSQIAERIGVSQMQVSRILAG  278

Query  252  SLARLRDQLE  261
            +L  LR+QL+
Sbjct  279  TLRCLREQLD  288


>gi|226359630|ref|YP_002777408.1| RNA polymerase sigma factor [Rhodococcus opacus B4]
 gi|226238115|dbj|BAH48463.1| RNA polymerase sigma factor [Rhodococcus opacus B4]
Length=265

 Score =  274 bits (701),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 143/247 (58%), Positives = 180/247 (73%), Gaps = 0/247 (0%)

Query  14   NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR  73
            ++Y DV      L  L   S E    RD+I+ RCLPLADHIARRF GRGE  +DL+QVAR
Sbjct  16   DDYKDVAPAVARLRILEESSGEASALRDEIITRCLPLADHIARRFGGRGEAHEDLLQVAR  75

Query  74   VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD  133
            +GLV A  RFD   G DFVS+AVPTIMGEVRR+FRD  WS++VPRR++ELH  +  A  +
Sbjct  76   LGLVKAVDRFDPDRGFDFVSYAVPTIMGEVRRYFRDTGWSMRVPRRMQELHALIAKAVDE  135

Query  134  LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV  193
            LSQ LGR+PSASE+AAEL +D  EV EGLLA ++Y TLS+D+  G D D   + +TLG+ 
Sbjct  136  LSQELGRSPSASEIAAELELDVREVSEGLLAKNAYQTLSMDAAMGDDPDDLPLAETLGEE  195

Query  194  DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL  253
            D  L  +E+   +RP LE LP  ER VL+LRFF SMTQT+IA+RVG+SQM VSR+LA++L
Sbjct  196  DPELANVESHASVRPALEKLPPLERRVLMLRFFGSMTQTEIAQRVGVSQMQVSRILARTL  255

Query  254  ARLRDQL  260
            + LR+QL
Sbjct  256  SGLREQL  262


>gi|254818833|ref|ZP_05223834.1| RNA polymerase sigma factor SigF [Mycobacterium intracellulare 
ATCC 13950]
Length=242

 Score =  274 bits (701),  Expect = 8e-72, Method: Compositional matrix adjust.
 Identities = 137/242 (57%), Positives = 180/242 (75%), Gaps = 2/242 (0%)

Query  22   MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV  81
            MF  L  +PA S E+ R R+ IV RCLPLADH+A  F  RGE  +DLIQVAR+GL+NA  
Sbjct  1    MFVALHRMPAESHEYARQREYIVARCLPLADHVASHFARRGEGLEDLIQVARLGLMNAVN  60

Query  82   RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA  141
            RFD   G  F+ FAVPT+MGEVRR+FRD SW ++VPRRL+ELH+++  ATADL+Q+LGRA
Sbjct  61   RFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLRELHVQISRATADLAQQLGRA  120

Query  142  PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDA--RAITDTLGDVDAGLDQ  199
            P+A EL+  L + R E++E L+AG +Y   S+D+  G+D     R++ D++GD+D  ++ 
Sbjct  121  PNAGELSQMLEVPREEIVECLVAGDAYRLDSLDAPLGADSSGTPRSVADSVGDIDPQIEH  180

Query  200  IENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQ  259
            I NRE LR L+  LP RER VL +RFF+SMTQ+QIAER+G+SQM VSR+LA +L  LRDQ
Sbjct  181  ITNREALRALVATLPPRERDVLRMRFFESMTQSQIAERIGVSQMQVSRILANTLRCLRDQ  240

Query  260  LE  261
            LE
Sbjct  241  LE  242


>gi|111017120|ref|YP_700092.1| sigma factor, sigma 70 type, group 3 [Rhodococcus jostii RHA1]
 gi|110816650|gb|ABG91934.1| sigma factor, sigma 70 type, group 3 [Rhodococcus jostii RHA1]
Length=265

 Score =  273 bits (699),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 141/247 (58%), Positives = 180/247 (73%), Gaps = 0/247 (0%)

Query  14   NEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVAR  73
            ++Y DV      L  L A S E    RD+++ RCLPLADHIARRF GRGE  +DL+QVAR
Sbjct  16   DDYKDVAPTVARLRALDASSGEASALRDEVITRCLPLADHIARRFGGRGEAHEDLLQVAR  75

Query  74   VGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATAD  133
            +GLV A  RFD   G DFVS+AVPTIMGEVRR+FRD  WS++VPRR++ELH  +  A  +
Sbjct  76   LGLVKAVDRFDPDRGFDFVSYAVPTIMGEVRRYFRDTGWSMRVPRRMQELHALITKAVDE  135

Query  134  LSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDV  193
            LSQ LGR+PSASE+AA+L +D  EV EGLLA ++Y TLS+D+  G D D   + +TLG+ 
Sbjct  136  LSQELGRSPSASEIAAQLELDVREVSEGLLAKNAYQTLSMDAAMGDDPDDLPLAETLGEE  195

Query  194  DAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSL  253
            D  L  +E+   +RP L+ LP  ER VL+LRFF SMTQT+IA+RVG+SQM VSR+LA++L
Sbjct  196  DPELANVESHAAVRPALQKLPPLERRVLMLRFFGSMTQTEIAQRVGVSQMQVSRILARTL  255

Query  254  ARLRDQL  260
            + LR QL
Sbjct  256  SGLRAQL  262


>gi|345009233|ref|YP_004811587.1| Sig B/F/G subfamily RNA polymerase sigma-28 subunit [Streptomyces 
violaceusniger Tu 4113]
 gi|344035582|gb|AEM81307.1| RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily [Streptomyces 
violaceusniger Tu 4113]
Length=293

 Score =  271 bits (693),  Expect = 6e-71, Method: Compositional matrix adjust.
 Identities = 135/239 (57%), Positives = 179/239 (75%), Gaps = 1/239 (0%)

Query  22   MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV  81
            MF EL GLP GS E    R+ +V+  LPL +H+ARRF  RGEP DDL QVA +GL+ +  
Sbjct  52   MFLELRGLPEGSTERAEMRNHLVRMHLPLVEHLARRFRNRGEPLDDLTQVATIGLIKSVD  111

Query  82   RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA  141
            RFD   G +F ++A PT++GE++RHFRD  W+V+VPRRL+EL L L TATA+LSQR GRA
Sbjct  112  RFDPDRGVEFSTYATPTVVGEIKRHFRDKGWAVRVPRRLQELRLSLTTATAELSQRHGRA  171

Query  142  PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVDAGLDQIE  201
            P+  ELA +L +   EV+EGL + ++Y TLS+D    +DD++ A+ DTLG  D  L+ +E
Sbjct  172  PTVHELAEQLSISEEEVLEGLESANAYSTLSLDV-PDTDDESPAVADTLGAEDEALEGVE  230

Query  202  NREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL  260
             RE L+PLLE LP RE+ +L+LRFF +MTQ+QIA+ VGISQMHVSRLLA++LA+LRD+L
Sbjct  231  YRESLKPLLEDLPPREKKILLLRFFGNMTQSQIAQEVGISQMHVSRLLARTLAQLRDKL  289


>gi|291454068|ref|ZP_06593458.1| RNA polymerase sigma factor [Streptomyces albus J1074]
 gi|291357017|gb|EFE83919.1| RNA polymerase sigma factor [Streptomyces albus J1074]
Length=365

 Score =  271 bits (693),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 132/239 (56%), Positives = 183/239 (77%), Gaps = 1/239 (0%)

Query  22   MFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAV  81
            +F EL  LPAG PE+   R+++V+  LPL +H+ARRF  RGEP DDL QVA +GL+ +  
Sbjct  124  LFIELRTLPAGGPEYAELRNRLVRMHLPLVEHLARRFRNRGEPLDDLTQVATIGLIKSVD  183

Query  82   RFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA  141
            RFD + G +F ++A PT++GE++RHFRD  W+V+VPRRL+EL L L +ATA+LSQR GR+
Sbjct  184  RFDPERGVEFSTYATPTVVGEIKRHFRDKGWAVRVPRRLQELRLSLTSATAELSQRHGRS  243

Query  142  PSASELAAELGMDRAEVIEGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVDAGLDQIE  201
            P+  ELA +LG+   EV+EGL + ++Y TLS+D    +DD++ A+ DTLG  D  L+ +E
Sbjct  244  PTVHELAEKLGISEEEVLEGLESANAYSTLSLDV-PDTDDESPAVADTLGSEDEALEGVE  302

Query  202  NREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL  260
             RE L+PLLE LP RE+ +L+LRFF +MTQ+QIA+ VGISQMHVSRLLA++LA+LR++L
Sbjct  303  YRESLKPLLEDLPPREKRILLLRFFGNMTQSQIAQEVGISQMHVSRLLARTLAQLREKL  361



Lambda     K      H
   0.320    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 388543189928


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40