BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3287c
Length=145
Score E
Sequences producing significant alignments: (Bits) Value
gi|345462022|ref|NP_217804.3| anti-sigma factor rsbW (sigma nega... 284 3e-75
gi|15842878|ref|NP_337915.1| hypothetical protein MT3386 [Mycoba... 284 3e-75
gi|289555565|ref|ZP_06444775.1| anti-sigma factor rsbW [Mycobact... 284 4e-75
gi|148824489|ref|YP_001289243.1| anti-sigma factor rsbW (sigma n... 283 8e-75
gi|41409505|ref|NP_962341.1| hypothetical protein MAP3407c [Myco... 241 3e-62
gi|118466073|ref|YP_883399.1| RsbW protein [Mycobacterium avium ... 240 5e-62
gi|342861502|ref|ZP_08718149.1| hypothetical protein MCOL_21556 ... 239 9e-62
gi|183981269|ref|YP_001849560.1| anti-sigma factor RsbW [Mycobac... 239 1e-61
gi|240171601|ref|ZP_04750260.1| anti-sigma factor RsbW [Mycobact... 238 2e-61
gi|254819526|ref|ZP_05224527.1| RsbW protein [Mycobacterium intr... 237 3e-61
gi|336459630|gb|EGO38565.1| anti-sigma regulatory factor (Ser/Th... 236 7e-61
gi|118618108|ref|YP_906440.1| anti-sigma factor RsbW [Mycobacter... 234 3e-60
gi|296168912|ref|ZP_06850581.1| RsbW protein [Mycobacterium para... 227 5e-58
gi|120402665|ref|YP_952494.1| putative anti-sigma regulatory fac... 189 1e-46
gi|145225368|ref|YP_001136046.1| putative anti-sigma regulatory ... 184 4e-45
gi|315445715|ref|YP_004078594.1| hypothetical protein Mspyr1_419... 184 5e-45
gi|333991746|ref|YP_004524360.1| anti-sigma factor RsbW [Mycobac... 181 5e-44
gi|126433911|ref|YP_001069602.1| putative anti-sigma regulatory ... 177 7e-43
gi|108798251|ref|YP_638448.1| putative anti-sigma regulatory fac... 176 1e-42
gi|118469037|ref|YP_886175.1| RsbW protein [Mycobacterium smegma... 167 6e-40
gi|169629599|ref|YP_001703248.1| anti-sigma factor RsbW [Mycobac... 120 7e-26
gi|466866|gb|AAA85942.1| B1308_F3_89 [Mycobacterium leprae] 99.0 2e-19
gi|118469103|ref|YP_886158.1| RsbW protein [Mycobacterium smegma... 86.7 1e-15
gi|111019110|ref|YP_702082.1| anti-sigma factor [Rhodococcus jos... 80.1 1e-13
gi|229490215|ref|ZP_04384062.1| conserved hypothetical protein [... 77.8 5e-13
gi|226305068|ref|YP_002765026.1| anti-sigma factor [Rhodococcus ... 77.0 8e-13
gi|226361250|ref|YP_002779028.1| anti-sigma factor [Rhodococcus ... 77.0 9e-13
gi|257054262|ref|YP_003132094.1| hypothetical protein Svir_01800... 73.9 8e-12
gi|291006468|ref|ZP_06564441.1| anti-sigma factor [Saccharopolys... 71.2 5e-11
gi|134100729|ref|YP_001106390.1| anti-sigma factor [Saccharopoly... 71.2 5e-11
gi|134102135|ref|YP_001107796.1| anti-sigma factor [Saccharopoly... 70.9 6e-11
gi|54025574|ref|YP_119816.1| putative anti-sigma factor [Nocardi... 67.8 5e-10
gi|257057165|ref|YP_003134997.1| hypothetical protein Svir_31970... 63.2 1e-08
gi|312138387|ref|YP_004005723.1| anti sigma factor [Rhodococcus ... 62.0 3e-08
gi|324998295|ref|ZP_08119407.1| anti-sigma factor [Pseudonocardi... 61.6 4e-08
gi|312139979|ref|YP_004007315.1| anti sigma factor [Rhodococcus ... 60.5 7e-08
gi|111017121|ref|YP_700093.1| anti-sigma factor, RsbW [Rhodococc... 60.1 1e-07
gi|333921989|ref|YP_004495570.1| hypothetical protein AS9A_4337 ... 59.7 2e-07
gi|54024679|ref|YP_118921.1| putative anti-sigma factor [Nocardi... 59.3 2e-07
gi|331695380|ref|YP_004331619.1| anti-sigma factor [Pseudonocard... 58.5 3e-07
gi|302527790|ref|ZP_07280132.1| predicted protein [Streptomyces ... 58.5 3e-07
gi|256379367|ref|YP_003103027.1| anti-sigma regulatory factor, s... 57.8 6e-07
gi|325674547|ref|ZP_08154235.1| anti-sigma factor RsbW protein [... 57.4 7e-07
gi|296270864|ref|YP_003653496.1| putative anti-sigma regulatory ... 57.0 8e-07
gi|54022120|ref|YP_116362.1| putative anti-sigma factor [Nocardi... 57.0 8e-07
gi|126215792|gb|ABN81016.1| putative anti-sigma factor [Rhodococ... 57.0 8e-07
gi|117927773|ref|YP_872324.1| putative anti-sigma regulatory fac... 56.6 1e-06
gi|226359631|ref|YP_002777409.1| anti-sigma factor [Rhodococcus ... 56.6 1e-06
gi|300782224|ref|YP_003762515.1| anti-sigma factor [Amycolatopsi... 56.2 1e-06
gi|158312829|ref|YP_001505337.1| putative anti-sigma regulatory ... 55.8 2e-06
>gi|345462022|ref|NP_217804.3| anti-sigma factor rsbW (sigma negative effector) [Mycobacterium
tuberculosis H37Rv]
gi|339299723|gb|AEJ51833.1| anti-sigma factor rsbW (sigma negative effector) [Mycobacterium
tuberculosis CCDC5180]
Length=168
Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 24 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 83
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH
Sbjct 84 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 143
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGRQPDVAGSVFGITLTARRAASSR
Sbjct 144 DGRQPDVAGSVFGITLTARRAASSR 168
>gi|15842878|ref|NP_337915.1| hypothetical protein MT3386 [Mycobacterium tuberculosis CDC1551]
gi|31794467|ref|NP_856960.1| anti-sigma factor rsbW (sigma negative effector) [Mycobacterium
bovis AF2122/97]
gi|121639176|ref|YP_979400.1| anti-sigma factor rsbW [Mycobacterium bovis BCG str. Pasteur
1173P2]
61 more sequence titles
Length=145
Score = 284 bits (726), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH
Sbjct 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGRQPDVAGSVFGITLTARRAASSR
Sbjct 121 DGRQPDVAGSVFGITLTARRAASSR 145
>gi|289555565|ref|ZP_06444775.1| anti-sigma factor rsbW [Mycobacterium tuberculosis KZN 605]
gi|5917770|gb|AAD56031.1|AF181975_2 anti-sigma factor RsbW [Mycobacterium bovis]
gi|2150033|gb|AAB58730.1| UsfX [Mycobacterium tuberculosis H37Rv]
gi|289440197|gb|EFD22690.1| anti-sigma factor rsbW [Mycobacterium tuberculosis KZN 605]
Length=242
Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 98 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 157
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH
Sbjct 158 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 217
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGRQPDVAGSVFGITLTARRAASSR
Sbjct 218 DGRQPDVAGSVFGITLTARRAASSR 242
>gi|148824489|ref|YP_001289243.1| anti-sigma factor rsbW (sigma negative effector) [Mycobacterium
tuberculosis F11]
gi|253800330|ref|YP_003033331.1| anti-sigma factor rsbW [Mycobacterium tuberculosis KZN 1435]
gi|254233897|ref|ZP_04927222.1| anti-sigma factor rsbW (sigma negative effector) [Mycobacterium
tuberculosis C]
12 more sequence titles
Length=208
Score = 283 bits (723), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 64 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 123
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH
Sbjct 124 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 183
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGRQPDVAGSVFGITLTARRAASSR
Sbjct 184 DGRQPDVAGSVFGITLTARRAASSR 208
>gi|41409505|ref|NP_962341.1| hypothetical protein MAP3407c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398336|gb|AAS05957.1| RsbW [Mycobacterium avium subsp. paratuberculosis K-10]
Length=172
Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 123/145 (85%), Positives = 133/145 (92%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M D+ L R RG RAVEL+VAARLENLA+LRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 28 MKDAGLHADKRPRGHRAVELHVAARLENLAMLRTLVGAIGTFEDLDFDAVADLRLAVDEV 87
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSA PDATL +VVDP+ D++VVEASAACDTHDVVAPGSFSWHVLT+LADDVQTFH
Sbjct 88 CTRLIRSATPDATLIVVVDPQDDQLVVEASAACDTHDVVAPGSFSWHVLTSLADDVQTFH 147
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGR+P+ AGSVFGITLTARRAASSR
Sbjct 148 DGREPNEAGSVFGITLTARRAASSR 172
>gi|118466073|ref|YP_883399.1| RsbW protein [Mycobacterium avium 104]
gi|254776693|ref|ZP_05218209.1| hypothetical protein MaviaA2_18781 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118167360|gb|ABK68257.1| RsbW protein [Mycobacterium avium 104]
Length=145
Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 123/145 (85%), Positives = 133/145 (92%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M D+ L R RG RAVEL+VAARLENLA+LRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 1 MKDAGLHADKRPRGHRAVELHVAARLENLAMLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSA PDATL +VVDP+ D++VVEASAACDTHDVVAPGSFSWHVLT+LADDVQTFH
Sbjct 61 CTRLIRSATPDATLIVVVDPQDDQLVVEASAACDTHDVVAPGSFSWHVLTSLADDVQTFH 120
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGR+P+ AGSVFGITLTARRAASSR
Sbjct 121 DGREPNEAGSVFGITLTARRAASSR 145
>gi|342861502|ref|ZP_08718149.1| hypothetical protein MCOL_21556 [Mycobacterium colombiense CECT
3035]
gi|342130991|gb|EGT84280.1| hypothetical protein MCOL_21556 [Mycobacterium colombiense CECT
3035]
Length=145
Score = 239 bits (610), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 122/145 (85%), Positives = 132/145 (92%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M D+ L R RG RAVEL+VAARLENLA+LRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 1 MNDAGLHANKRPRGHRAVELHVAARLENLAMLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSA PDATL +VVDP+ D++VVEASAACDTHDVVAPGSFSWHVLT+LADDVQTFH
Sbjct 61 CTRLIRSATPDATLIVVVDPQDDQLVVEASAACDTHDVVAPGSFSWHVLTSLADDVQTFH 120
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGR+P+ GSVFGITLTARRAASSR
Sbjct 121 DGREPNETGSVFGITLTARRAASSR 145
>gi|183981269|ref|YP_001849560.1| anti-sigma factor RsbW [Mycobacterium marinum M]
gi|183174595|gb|ACC39705.1| anti-sigma factor RsbW [Mycobacterium marinum M]
Length=172
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/145 (84%), Positives = 129/145 (89%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M D+D R+RG RAVELNVAARLENL++LRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 28 MTDADPRINKRERGHRAVELNVAARLENLSMLRTLVGAIGTFEDLDFDAVADLRLAVDEV 87
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSA PDATL LVVDPR DE+VV+ASAAC THDVVAPGSFSWHVLT+LADDVQTFH
Sbjct 88 CTRLIRSATPDATLTLVVDPRDDELVVQASAACGTHDVVAPGSFSWHVLTSLADDVQTFH 147
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGR P+ AGSVFGI LTARR AS R
Sbjct 148 DGRPPEAAGSVFGIMLTARRVASGR 172
>gi|240171601|ref|ZP_04750260.1| anti-sigma factor RsbW [Mycobacterium kansasii ATCC 12478]
Length=145
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/145 (85%), Positives = 128/145 (89%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M+D+D QRG RAVEL VAARLENLA+LRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 1 MSDADARPNRHQRGERAVELKVAARLENLAILRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSA P+ATL LVVDP DE+VVEASA CDTHDVVAPGSFSWHVLT+LADDVQTFH
Sbjct 61 CTRLIRSATPNATLTLVVDPHDDELVVEASAMCDTHDVVAPGSFSWHVLTSLADDVQTFH 120
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGR PD AGSVFGI LTARRAAS R
Sbjct 121 DGRMPDAAGSVFGIVLTARRAASGR 145
>gi|254819526|ref|ZP_05224527.1| RsbW protein [Mycobacterium intracellulare ATCC 13950]
Length=145
Score = 237 bits (605), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/145 (83%), Positives = 131/145 (91%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M D+ R RG RAVEL+VAARLENLA+LRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 1 MNDAGSHANKRPRGHRAVELHVAARLENLAMLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSA PDATL +VVDP+ D++VVEASAACDTHDVV+PGSFSWHVLT+LADDVQTFH
Sbjct 61 CTRLIRSATPDATLSVVVDPQDDQLVVEASAACDTHDVVSPGSFSWHVLTSLADDVQTFH 120
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGR+P+ GSVFGITLTARRAASSR
Sbjct 121 DGREPNETGSVFGITLTARRAASSR 145
>gi|336459630|gb|EGO38565.1| anti-sigma regulatory factor (Ser/Thr protein kinase) [Mycobacterium
avium subsp. paratuberculosis S397]
Length=140
Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/135 (89%), Positives = 129/135 (96%), Gaps = 0/135 (0%)
Query 11 RQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALP 70
R RG RAVEL+VAARLENLA+LRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSA P
Sbjct 6 RPRGHRAVELHVAARLENLAMLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSATP 65
Query 71 DATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQPDVAGS 130
DATL +VVDP+ D++VVEASAACDTHDVVAPGSFSWHVLT+LADDVQTFHDGR+P+ AGS
Sbjct 66 DATLIVVVDPQDDQLVVEASAACDTHDVVAPGSFSWHVLTSLADDVQTFHDGREPNEAGS 125
Query 131 VFGITLTARRAASSR 145
VFGITLTARRAASSR
Sbjct 126 VFGITLTARRAASSR 140
>gi|118618108|ref|YP_906440.1| anti-sigma factor RsbW [Mycobacterium ulcerans Agy99]
gi|118570218|gb|ABL04969.1| anti-sigma factor RsbW [Mycobacterium ulcerans Agy99]
Length=145
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/145 (83%), Positives = 128/145 (89%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M D+D R+RG RAVELNVAARLENL++LRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 1 MTDADPRINKRERGHRAVELNVAARLENLSMLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSA PDATL LVVDPR DE+VV+ASAAC THDVVA GSFSWHVLT+LADDVQTFH
Sbjct 61 CTRLIRSATPDATLTLVVDPRDDELVVQASAACSTHDVVALGSFSWHVLTSLADDVQTFH 120
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGR P+ AGSVFGI LTARR AS R
Sbjct 121 DGRPPEAAGSVFGIMLTARRVASGR 145
>gi|296168912|ref|ZP_06850581.1| RsbW protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896381|gb|EFG76034.1| RsbW protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=145
Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 123/145 (85%), Positives = 132/145 (92%), Gaps = 0/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M D+ L T RQRG RAVEL VAARLENLA+LRTLVGAIGTFEDLDFDAVADLRLAVDEV
Sbjct 1 MNDAGLRTTRRQRGRRAVELRVAARLENLAMLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIR A PDATL +VVDP+ D++VVEASAACDTHDVVAPGSFSWHVLT+LADDVQTFH
Sbjct 61 CTRLIRCATPDATLVVVVDPQDDQLVVEASAACDTHDVVAPGSFSWHVLTSLADDVQTFH 120
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
DGR+P+ GSVFGITLTARRAASSR
Sbjct 121 DGREPNQTGSVFGITLTARRAASSR 145
>gi|120402665|ref|YP_952494.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Mycobacterium vanbaalenii PYR-1]
gi|119955483|gb|ABM12488.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Mycobacterium vanbaalenii PYR-1]
Length=163
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/143 (68%), Positives = 116/143 (82%), Gaps = 1/143 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MAD GR++G ++VEL VAA LENLA+LRTLV AIGTFEDLDFDAVADLRLAVDE
Sbjct 20 MADVASHINGRRQGAQSVELRVAATLENLAVLRTLVAAIGTFEDLDFDAVADLRLAVDEA 79
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSA+PD+TL +VVDP+ D +VV AS CD+ D++APGSFSWHVL++L DDV+TF
Sbjct 80 CTRLIRSAVPDSTLLVVVDPQPDALVVHASTTCDSTDILAPGSFSWHVLSSLTDDVKTFS 139
Query 121 DGRQPDVAGSVFGITLTARRAAS 143
DGR G VFGI++T RRA+S
Sbjct 140 DGRSVG-DGEVFGISMTTRRASS 161
>gi|145225368|ref|YP_001136046.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Mycobacterium gilvum PYR-GCK]
gi|145217854|gb|ABP47258.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Mycobacterium gilvum PYR-GCK]
Length=163
Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/143 (67%), Positives = 115/143 (81%), Gaps = 1/143 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MAD + G++ ++VEL VAA LENLA+LRTLV AIGTFEDLDFDAVADLRLAVDE
Sbjct 20 MADVASHSNGQRLSPQSVELRVAAALENLAVLRTLVAAIGTFEDLDFDAVADLRLAVDEA 79
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSALPD+TL +VVDP+ D +VV AS CD+ D++APGSFSWHVL++L D+V TF
Sbjct 80 CTRLIRSALPDSTLLVVVDPQPDALVVHASTTCDSTDILAPGSFSWHVLSSLTDEVTTFS 139
Query 121 DGRQPDVAGSVFGITLTARRAAS 143
DG+ D G VFGI++T RRA+S
Sbjct 140 DGQAAD-DGEVFGISMTTRRASS 161
>gi|315445715|ref|YP_004078594.1| hypothetical protein Mspyr1_41990 [Mycobacterium sp. Spyr1]
gi|315264018|gb|ADU00760.1| hypothetical protein Mspyr1_41990 [Mycobacterium sp. Spyr1]
Length=144
Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/143 (67%), Positives = 114/143 (80%), Gaps = 1/143 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MAD + G++ ++VEL VAA LENLA+LRTLV AIGTFEDLDFDAVADLRLAVDE
Sbjct 1 MADVASHSNGQRLSPQSVELRVAAALENLAVLRTLVAAIGTFEDLDFDAVADLRLAVDEA 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSALPD+TL +VVDP+ D +VV AS CD+ D++APGSFSWHVL++L D+V TF
Sbjct 61 CTRLIRSALPDSTLLVVVDPQPDALVVHASTTCDSTDILAPGSFSWHVLSSLTDEVTTFS 120
Query 121 DGRQPDVAGSVFGITLTARRAAS 143
DG Q G VFGI++T RRA+S
Sbjct 121 DG-QAAADGEVFGISMTTRRASS 142
>gi|333991746|ref|YP_004524360.1| anti-sigma factor RsbW [Mycobacterium sp. JDM601]
gi|333487714|gb|AEF37106.1| anti-sigma factor RsbW [Mycobacterium sp. JDM601]
Length=145
Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/130 (69%), Positives = 108/130 (84%), Gaps = 0/130 (0%)
Query 16 RAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLR 75
RAVEL VA RLE+LA++R +VGAI TFEDLD D VADLRLA+DE+CT+LIR A PDATL+
Sbjct 16 RAVELRVAPRLESLAVVRMVVGAIATFEDLDVDTVADLRLAIDELCTQLIRCAAPDATLQ 75
Query 76 LVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQPDVAGSVFGIT 135
+++DP+ D+V + ASAA D DV+ PGSFSWHVLT+L DDVQTFHDG++P AG VFG+T
Sbjct 76 VIIDPKDDDVTIVASAAGDGADVLTPGSFSWHVLTSLVDDVQTFHDGQEPGGAGDVFGVT 135
Query 136 LTARRAASSR 145
LT RRA S R
Sbjct 136 LTTRRAESRR 145
>gi|126433911|ref|YP_001069602.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Mycobacterium sp. JLS]
gi|126233711|gb|ABN97111.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Mycobacterium sp. JLS]
Length=179
Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 90/145 (63%), Positives = 112/145 (78%), Gaps = 1/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MA+ + G+ R+VEL VAA LENLA+LRTLV A+GTFEDLDFDAV+DLRLAVDE
Sbjct 36 MAEVENQRNGQANADRSVELRVAATLENLAVLRTLVAAVGTFEDLDFDAVSDLRLAVDEA 95
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSA+P +TL +VV P EVVV+AS C D++APGSFSWHVL++L D+V+TF
Sbjct 96 CTRLIRSAVPHSTLVVVVHPNDSEVVVDASTTCQNTDILAPGSFSWHVLSSLTDEVRTFS 155
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
+G+ P G VFGI++T RRA+S R
Sbjct 156 NGQAPG-DGQVFGISMTTRRASSLR 179
>gi|108798251|ref|YP_638448.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Mycobacterium sp. MCS]
gi|119867347|ref|YP_937299.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Mycobacterium sp. KMS]
gi|108768670|gb|ABG07392.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Mycobacterium sp. MCS]
gi|119693436|gb|ABL90509.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Mycobacterium sp. KMS]
Length=179
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/145 (63%), Positives = 111/145 (77%), Gaps = 1/145 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MA+ + G+ R+VEL VAA LENLA+LRTLV A+GTFEDLDFDAV+DLRLAVDE
Sbjct 36 MAEVENQRNGQANADRSVELRVAATLENLAVLRTLVAAVGTFEDLDFDAVSDLRLAVDEA 95
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRLIRSA+P +TL +VV P EVVV+AS C D++APGSFSWHVL++L D+V+TF
Sbjct 96 CTRLIRSAVPHSTLVVVVHPNDSEVVVDASTTCQNTDILAPGSFSWHVLSSLTDEVRTFS 155
Query 121 DGRQPDVAGSVFGITLTARRAASSR 145
+G P G VFGI++T RRA+S R
Sbjct 156 NGHAPG-DGQVFGISMTTRRASSLR 179
>gi|118469037|ref|YP_886175.1| RsbW protein [Mycobacterium smegmatis str. MC2 155]
gi|25396412|dbj|BAC24794.1| anti-SigF hypothetical protein [Mycobacterium smegmatis]
gi|118170324|gb|ABK71220.1| RsbW protein [Mycobacterium smegmatis str. MC2 155]
Length=138
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/130 (67%), Positives = 100/130 (77%), Gaps = 1/130 (0%)
Query 13 RGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDA 72
RG R+VE+ VAA LENLA++RT+V AI TFEDLDFD VADLRLAVDE CT LIRSA+PDA
Sbjct 7 RGERSVEIRVAAMLENLAVVRTVVAAIATFEDLDFDVVADLRLAVDEACTTLIRSAVPDA 66
Query 73 TLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQPDVAGSVF 132
TL L VDP D VV+ S C +VV PGSFSWHVL++L D+V TF DG P+ G VF
Sbjct 67 TLVLRVDPGPDAVVISTSTVCIGDNVVEPGSFSWHVLSSLTDEVNTFTDGSGPE-EGQVF 125
Query 133 GITLTARRAA 142
GIT+T RRA+
Sbjct 126 GITMTTRRAS 135
>gi|169629599|ref|YP_001703248.1| anti-sigma factor RsbW [Mycobacterium abscessus ATCC 19977]
gi|169241566|emb|CAM62594.1| Anti-sigma factor RsbW [Mycobacterium abscessus]
Length=151
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/144 (45%), Positives = 89/144 (62%), Gaps = 0/144 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M ++ G R++ ++AARLENLA++RT+V A T +DLD D VADL+LA DE
Sbjct 1 MTEAHTTHSGSHPDDRSLRFDMAARLENLAMMRTVVAAAATVDDLDMDMVADLKLATDEA 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
CTRL+RS++P+A L + +D D +V+ + C DV SFSWHVL++LAD V+TF
Sbjct 61 CTRLVRSSVPNAMLVVRLDFHLDRLVMAVYSHCQPGDVFPLDSFSWHVLSSLADHVETFE 120
Query 121 DGRQPDVAGSVFGITLTARRAASS 144
D G + GI+LT R S
Sbjct 121 RAHPDDPVGHIVGISLTKLRDTGS 144
>gi|466866|gb|AAA85942.1| B1308_F3_89 [Mycobacterium leprae]
Length=75
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/72 (73%), Positives = 58/72 (81%), Gaps = 0/72 (0%)
Query 31 LLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLRLVVDPRKDEVVVEAS 90
LL+ LVG IGTFEDLDF AVA+L LAVDE RL+RSA D+TL LVVD R DE+VVEAS
Sbjct 2 LLQILVGVIGTFEDLDFGAVANLLLAVDEAYIRLVRSATSDSTLVLVVDSRDDELVVEAS 61
Query 91 AACDTHDVVAPG 102
A CDT+DVVA G
Sbjct 62 AICDTYDVVAVG 73
>gi|118469103|ref|YP_886158.1| RsbW protein [Mycobacterium smegmatis str. MC2 155]
gi|118170390|gb|ABK71286.1| RsbW protein [Mycobacterium smegmatis str. MC2 155]
Length=194
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/152 (43%), Positives = 80/152 (53%), Gaps = 23/152 (15%)
Query 8 TKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRS 67
T GR+R V + V AR LA LR ++GAI TFE LD D VADL LAVDE C LI +
Sbjct 36 TAGRRR----VVVEVPAREAMLAPLRNILGAIATFEGLDSDVVADLCLAVDEACAVLINA 91
Query 68 ALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTF------HD 121
A PD+ + L + +VV+AS C + G FS VL+AL D+V TF +
Sbjct 92 AAPDSLVSLDIVADAQMLVVDASTTCSRPEDAGLGRFSERVLSALTDEVGTFAAAADTAN 151
Query 122 GRQPDVAGS-------------VFGITLTARR 140
G + D S VFGI+LT RR
Sbjct 152 GTEDDPGNSPGNDPENGTDPRGVFGISLTTRR 183
>gi|111019110|ref|YP_702082.1| anti-sigma factor [Rhodococcus jostii RHA1]
gi|110818640|gb|ABG93924.1| possible anti-sigma factor [Rhodococcus jostii RHA1]
Length=144
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/119 (39%), Positives = 69/119 (58%), Gaps = 3/119 (2%)
Query 18 VELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLRLV 77
VEL V A + L++LR L + ED D D++AD++LA+DE+CT+LI A PDA L
Sbjct 18 VELRVRATPDQLSVLRALAATVAIHEDFDLDSIADIKLAMDEICTQLIVRATPDAVLVCR 77
Query 78 VDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQPDVAGSVFGITL 136
+ + + V+ S+ + D + SF+WHVL AL D V ++PD A + F T+
Sbjct 78 LQYLDNTLRVDVSSTTTSVDSLGERSFAWHVLNALTDSVDL---KQEPDSASAGFVTTM 133
>gi|229490215|ref|ZP_04384062.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229322963|gb|EEN88737.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=143
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/130 (36%), Positives = 71/130 (55%), Gaps = 7/130 (5%)
Query 18 VELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATL--R 75
VEL + A L+ L++LR L + E+ D DA+AD++LA+DE+CT LI A PD+ L R
Sbjct 18 VELRIQATLDQLSILRALAATVAIQENFDLDAIADIKLAMDEICTHLIVRAAPDSVLVCR 77
Query 76 LVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQPDVAGSVFGIT 135
V P + V V S ++ + SF WH+LT L D + ++ ++ G + T
Sbjct 78 FVFTPPQLHVSV--STTTTEYEDSSQRSFGWHILTELTDSISL---DQEENLGGVGYITT 132
Query 136 LTARRAASSR 145
+ +A S R
Sbjct 133 MKFTKALSGR 142
>gi|226305068|ref|YP_002765026.1| anti-sigma factor [Rhodococcus erythropolis PR4]
gi|226184183|dbj|BAH32287.1| anti-sigma factor [Rhodococcus erythropolis PR4]
Length=173
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/130 (36%), Positives = 70/130 (54%), Gaps = 7/130 (5%)
Query 18 VELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATL--R 75
VEL + A L+ L++LR L + E+ D DA+AD++LA+DE+CT LI A PD+ L R
Sbjct 48 VELRIQATLDQLSILRALAATVAIQENFDLDAIADIKLAMDEICTHLIVRAAPDSVLVCR 107
Query 76 LVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQPDVAGSVFGIT 135
V P + V V S ++ SF WH+LT L D + ++ ++ G + T
Sbjct 108 FVFTPPQLHVSV--STTTTEYEDSTQRSFGWHILTELTDSISL---DQEENLGGVGYITT 162
Query 136 LTARRAASSR 145
+ +A S R
Sbjct 163 MKFTKALSGR 172
>gi|226361250|ref|YP_002779028.1| anti-sigma factor [Rhodococcus opacus B4]
gi|226239735|dbj|BAH50083.1| putative anti-sigma factor [Rhodococcus opacus B4]
Length=144
Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/120 (41%), Positives = 69/120 (58%), Gaps = 5/120 (4%)
Query 18 VELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLRLV 77
VEL V A + L++LR L + ED D D++AD++LA+DE+CT+LI A PDA L
Sbjct 18 VELRVRATPDQLSVLRALAATVAIHEDFDLDSIADIKLAMDEICTQLIVRATPDALLVCR 77
Query 78 VDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQ-PDVAGSVFGITL 136
+ + V+ S+ + D + SF+WHVL AL D V D RQ PD A + F T+
Sbjct 78 LQFLDGTLRVDVSSTTTSVDSLGERSFAWHVLNALTDSV----DLRQEPDPATAGFVTTM 133
>gi|257054262|ref|YP_003132094.1| hypothetical protein Svir_01800 [Saccharomonospora viridis DSM
43017]
gi|256584134|gb|ACU95267.1| hypothetical protein Svir_01800 [Saccharomonospora viridis DSM
43017]
Length=172
Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/127 (34%), Positives = 69/127 (55%), Gaps = 4/127 (3%)
Query 18 VELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATL--R 75
+EL + A L +L ++R++ +I D D D++ADLRLAVDE C+ LI ALPD+T+ R
Sbjct 46 IELRLGASLVHLPIIRSVAASIAMRADFDLDSIADLRLAVDEACSTLITRALPDSTMTCR 105
Query 76 LVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQPDVAGSVFGIT 135
+D +D+++ + + + SF W VLT LAD + + + + I
Sbjct 106 FTID--EDQLLFRGTVLSTETEAPSTTSFGWRVLTTLADAASAWTEQHPENGQRNWIHIE 163
Query 136 LTARRAA 142
L R+ A
Sbjct 164 LAKRKPA 170
>gi|291006468|ref|ZP_06564441.1| anti-sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length=144
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (55%), Gaps = 0/105 (0%)
Query 17 AVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLRL 76
AVE+ VAA+ LA++R + G + D D DA+AD+RLAVDE C LI A+P L
Sbjct 18 AVEIRVAAQPGPLAVMRAVAGDLAIRADFDVDAIADVRLAVDEACATLIALAMPGTWLTC 77
Query 77 VVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHD 121
D +V A + +F W VLTALAD++ + HD
Sbjct 78 RFRTEHDRLVFTAEVVSEHAAAPRTDTFGWRVLTALADEISSAHD 122
>gi|134100729|ref|YP_001106390.1| anti-sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|133913352|emb|CAM03465.1| anti-sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length=139
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (55%), Gaps = 0/105 (0%)
Query 17 AVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLRL 76
AVE+ VAA+ LA++R + G + D D DA+AD+RLAVDE C LI A+P L
Sbjct 13 AVEIRVAAQPGPLAVMRAVAGDLAIRADFDVDAIADVRLAVDEACATLIALAMPGTWLTC 72
Query 77 VVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHD 121
D +V A + +F W VLTALAD++ + HD
Sbjct 73 RFRTEHDRLVFTAEVVSEHAAAPRTDTFGWRVLTALADEISSAHD 117
>gi|134102135|ref|YP_001107796.1| anti-sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|291007614|ref|ZP_06565587.1| anti-sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|46240841|dbj|BAD15073.1| putative regulator of SigH [Saccharopolyspora erythraea]
gi|133914758|emb|CAM04871.1| anti-sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length=146
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 64/120 (54%), Gaps = 10/120 (8%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
A+ D PT VE+ VAA LA++R ++G + D D D++ADLRLAVDE
Sbjct 9 YAEPDTPTSN------LVEVRVAAEPAQLAVMRAVIGDLAMRADFDVDSIADLRLAVDEA 62
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAP--GSFSWHVLTALADDVQT 118
C+ L+R A P A+L + + V A D D P +FSW VL+ALAD V T
Sbjct 63 CSSLVRLAAPSASLVCRFHIHEGGLSVTAEVISD--DAFGPRKDTFSWRVLSALADSVST 120
>gi|54025574|ref|YP_119816.1| putative anti-sigma factor [Nocardia farcinica IFM 10152]
gi|54017082|dbj|BAD58452.1| putative anti-sigma factor [Nocardia farcinica IFM 10152]
Length=140
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/123 (35%), Positives = 62/123 (51%), Gaps = 2/123 (1%)
Query 18 VELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLRLV 77
VE+ VAA + L ++R L + D D VAD+RLAVDEVC+ LI A P ++L
Sbjct 15 VEIRVAASVTQLPIVRGLAETLVLLSDFTLDEVADIRLAVDEVCSTLIAVAAPGSSLDCW 74
Query 78 VDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQPDVAGSVFGITLT 137
+ E++V + T + SF WHVL L D V+ D ++G + T+
Sbjct 75 FSIGERELLVRVTGLAGTEGLPDQHSFGWHVLRTLTDSVKATQDSYDSALSG--YPTTVE 132
Query 138 ARR 140
RR
Sbjct 133 FRR 135
>gi|257057165|ref|YP_003134997.1| hypothetical protein Svir_31970 [Saccharomonospora viridis DSM
43017]
gi|256587037|gb|ACU98170.1| hypothetical protein Svir_31970 [Saccharomonospora viridis DSM
43017]
Length=127
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/105 (37%), Positives = 51/105 (49%), Gaps = 0/105 (0%)
Query 16 RAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLR 75
R VE+ V A E + ++R + + DL D +ADLRLAVDE C L+ A TLR
Sbjct 4 RTVEITVDAEPELVPVVRNVAADLAIRTDLQLDTIADLRLAVDEACGLLLARAAKPTTLR 63
Query 76 LVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFH 120
+ AC + F+WHVLTAL V++FH
Sbjct 64 TRFTISDGTITARTQVACREGTSLPQEGFNWHVLTALVRAVRSFH 108
>gi|312138387|ref|YP_004005723.1| anti sigma factor [Rhodococcus equi 103S]
gi|325674620|ref|ZP_08154307.1| anti-sigma factor [Rhodococcus equi ATCC 33707]
gi|311887726|emb|CBH47038.1| putative anti sigma factor [Rhodococcus equi 103S]
gi|325554206|gb|EGD23881.1| anti-sigma factor [Rhodococcus equi ATCC 33707]
Length=143
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/121 (34%), Positives = 58/121 (48%), Gaps = 3/121 (2%)
Query 17 AVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLRL 76
AV + VAAR + L +LR L + + D ADL+LAVD++CT LI SA PD +
Sbjct 19 AVTVTVAARHDQLTILRMLTELVAMRNNCTLDQAADLKLAVDQICTLLISSAAPDTEVSC 78
Query 77 VVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQPDVAGSVFGITL 136
D + +A GS W +L+ALAD + +QP +G T+
Sbjct 79 RYTTVDDTFTITLTAFTVGEWYPEQGSLEWRILSALADSIAI---DQQPGASGGATESTV 135
Query 137 T 137
T
Sbjct 136 T 136
>gi|324998295|ref|ZP_08119407.1| anti-sigma factor [Pseudonocardia sp. P1]
Length=144
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/133 (34%), Positives = 61/133 (46%), Gaps = 3/133 (2%)
Query 4 SDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTR 63
S PT + G VE+ AAR + +R + + D D DA++DLR+AVDE C
Sbjct 7 SSAPTD-QASGAATVEIRTAARAALIPTVRAVASDLAARADFDLDAISDLRMAVDEACAT 65
Query 64 LIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGR 123
L+ A P ++LR D + + V A + SF W VL LAD V +
Sbjct 66 LVGLAAPGSSLRCTFDVHGERIDVSARVHTGADAELPTDSFGWRVLQTLADQVAV--ETG 123
Query 124 QPDVAGSVFGITL 136
+ D GS I L
Sbjct 124 EEDGGGSALTIRL 136
>gi|312139979|ref|YP_004007315.1| anti sigma factor [Rhodococcus equi 103S]
gi|311889318|emb|CBH48634.1| putative anti sigma factor [Rhodococcus equi 103S]
Length=146
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/139 (32%), Positives = 60/139 (44%), Gaps = 2/139 (1%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M+++ L T Q +EL A LA +R + ++ D+ D +ADLRLAVDE
Sbjct 1 MSEACLSTSRNQEPAPVIELRTPAEPIQLAPIRGVTASLAERCDMTLDQLADLRLAVDEA 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTH--DVVAPGSFSWHVLTALADDVQT 118
C+ L R ALPD+ + R D A D +F WHVL L DD+
Sbjct 61 CSTLFRIALPDSDIVCTFRVRADNFRFAACVPTSRPAVDGEYEQTFGWHVLRTLTDDLAL 120
Query 119 FHDGRQPDVAGSVFGITLT 137
D S I+ T
Sbjct 121 HRHHGNGDGRASTVTISFT 139
>gi|111017121|ref|YP_700093.1| anti-sigma factor, RsbW [Rhodococcus jostii RHA1]
gi|110816651|gb|ABG91935.1| anti-sigma factor, possible RsbW [Rhodococcus jostii RHA1]
Length=143
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/117 (37%), Positives = 56/117 (48%), Gaps = 0/117 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MA+ D + R R VEL VAA E L ++R + + D D VAD++LAVDEV
Sbjct 1 MAEVDEVRRMRTRSGVPVELRVAAEFEQLPVVRAVAETLAVLGDFTLDDVADIKLAVDEV 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQ 117
C+ LI +A A L + + V SA V SF WHVL L + V
Sbjct 61 CSELIAAAPGSAELTCSFVVTEPGLHVTISAPLTRGGVPNRESFGWHVLETLMNAVS 117
>gi|333921989|ref|YP_004495570.1| hypothetical protein AS9A_4337 [Amycolicicoccus subflavus DQS3-9A1]
gi|333484210|gb|AEF42770.1| hypothetical protein AS9A_4337 [Amycolicicoccus subflavus DQS3-9A1]
Length=145
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/97 (38%), Positives = 49/97 (51%), Gaps = 0/97 (0%)
Query 18 VELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLRLV 77
VEL A L L+L R + A+ T D D D+V DLR+AVDE CT+LI +A D + V
Sbjct 15 VELRFPATLTQLSLARLVTVAVMTRADFDGDSVEDLRMAVDEACTQLIATASEDGEVHCV 74
Query 78 VDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALAD 114
+ V V A + + WH++ AL D
Sbjct 75 FVSTDEGVTVTAGVTPSGNSELQRTGLGWHIIEALTD 111
>gi|54024679|ref|YP_118921.1| putative anti-sigma factor [Nocardia farcinica IFM 10152]
gi|54016187|dbj|BAD57557.1| putative anti-sigma factor [Nocardia farcinica IFM 10152]
Length=147
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/113 (33%), Positives = 55/113 (49%), Gaps = 3/113 (2%)
Query 14 GVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDAT 73
G ++ + V AR + L +LR L + D D V D+RLA+DEV T L+ A P++
Sbjct 15 GTTSIGIRVPARPDQLTMLRALAETVALIADFAIDEVTDIRLALDEVATALVLDAAPESI 74
Query 74 LRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADD---VQTFHDGR 123
L D + V + VV+ F WH++ AL + VQ +DGR
Sbjct 75 LECEFSYAADCMHVRVRGVALSDAVVSQAGFGWHIVRALTESIAAVQEPYDGR 127
>gi|331695380|ref|YP_004331619.1| anti-sigma factor [Pseudonocardia dioxanivorans CB1190]
gi|326950069|gb|AEA23766.1| anti-sigma factor [Pseudonocardia dioxanivorans CB1190]
Length=150
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/139 (34%), Positives = 62/139 (45%), Gaps = 15/139 (10%)
Query 14 GVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDAT 73
G VE+ A + +R + + D D DA++DLR+AVDE C L+ A P +
Sbjct 20 GSPTVEVRTTASAALIPTIRAVASDLAARADFDLDAISDLRMAVDEACATLVDVAAPGSA 79
Query 74 LRLVVDPRKDEVVVEA---SAACDTHDVVAPGSFSWHVLTALADDVQTFH----DGRQPD 126
LR R+D + V A A DT VA +F W VL L D+V DGR
Sbjct 80 LRCRFQVRQDRIDVSAEVEGAGVDT--TVATDTFGWRVLETLTDEVSVSRTDGPDGRP-- 135
Query 127 VAGSVFGITLTARRAASSR 145
V GI L A+ R
Sbjct 136 ----VVGIVLGKSAGATER 150
>gi|302527790|ref|ZP_07280132.1| predicted protein [Streptomyces sp. AA4]
gi|302436685|gb|EFL08501.1| predicted protein [Streptomyces sp. AA4]
Length=137
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/121 (33%), Positives = 58/121 (48%), Gaps = 7/121 (5%)
Query 18 VELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDA--TLR 75
+EL + A + L+R L A+ D DA+AD ++AVDE C +++ +A P A T +
Sbjct 12 IELRLPAETYQIPLVRMLAQAVAARADYGLDAIADAKMAVDEACAQVVSTAAPGAAMTCQ 71
Query 76 LVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTFHDGRQPDVAGSVFGIT 135
V P D + + + SF WHVLT LA +V PD A + +T
Sbjct 72 FTVSP--DGIRFTVKTRTQQPEPPSERSFGWHVLTTLASNVSARS---VPDPAEDGYALT 126
Query 136 L 136
L
Sbjct 127 L 127
>gi|256379367|ref|YP_003103027.1| anti-sigma regulatory factor, serine/threonine protein kinase
[Actinosynnema mirum DSM 43827]
gi|255923670|gb|ACU39181.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Actinosynnema mirum DSM 43827]
Length=145
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/119 (38%), Positives = 59/119 (50%), Gaps = 11/119 (9%)
Query 7 PTKGR-QRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLI 65
P G + VEL +AA L+++R + I +D D D++ DL+LAVDE C+ LI
Sbjct 6 PHSGELDNALSGVELRIAADPTQLSVVRAVAADIAMRQDFDLDSIEDLKLAVDEACSTLI 65
Query 66 RSALPDATL--RLVV---DPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQTF 119
A A L R VV D + VV AA D SF W VL+AL D V T+
Sbjct 66 SLASKGAVLSARFVVADGDVQVSTQVVSERAAPPDRD-----SFGWRVLSALVDSVTTW 119
>gi|325674547|ref|ZP_08154235.1| anti-sigma factor RsbW protein [Rhodococcus equi ATCC 33707]
gi|325554807|gb|EGD24481.1| anti-sigma factor RsbW protein [Rhodococcus equi ATCC 33707]
Length=146
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/141 (32%), Positives = 62/141 (44%), Gaps = 6/141 (4%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
M+++ L T Q +EL A LA +R + ++ D+ D +ADLRLAVDE
Sbjct 1 MSEACLSTSRNQEPAPVIELRTPAEPIQLAPIRGVTASLAERCDMTLDQLADLRLAVDEA 60
Query 61 CTRLIRSALPDA----TLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDV 116
C+ L R ALP + T R+ D + V S D +F WHVL L DD+
Sbjct 61 CSTLFRIALPASDIVCTFRVRADTFRFAACVPTSRP--AVDGEYEQTFGWHVLRTLTDDL 118
Query 117 QTFHDGRQPDVAGSVFGITLT 137
D S I+ T
Sbjct 119 ALHRHHGNGDGRASTVTISFT 139
>gi|296270864|ref|YP_003653496.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Thermobispora bispora DSM 43833]
gi|296093651|gb|ADG89603.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Thermobispora bispora DSM 43833]
Length=141
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/107 (38%), Positives = 56/107 (53%), Gaps = 5/107 (4%)
Query 14 GVR-AVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDA 72
GVR V + + A L++LRT + D D + DLR+AVDE C L+R A+P
Sbjct 14 GVRDVVSVRLPAVSAYLSVLRTATAGLAARLDFTLDQIEDLRIAVDEACAMLLRHAVPGT 73
Query 73 TLRLVVDPRKDEVVVEASAACDTHDVVAP--GSFSWHVLTALADDVQ 117
LR + +E+ V T V+P F+W VLTALAD+V+
Sbjct 74 DLRAEFELSGEEMTVRVE--VTTLGAVSPDREGFAWMVLTALADEVE 118
>gi|54022120|ref|YP_116362.1| putative anti-sigma factor [Nocardia farcinica IFM 10152]
gi|54013628|dbj|BAD54998.1| putative anti-sigma factor [Nocardia farcinica IFM 10152]
Length=145
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/114 (33%), Positives = 54/114 (48%), Gaps = 4/114 (3%)
Query 18 VELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATLRLV 77
+ + V A E L +LR L + D D VAD+RLA+DEV T L++ A+P + L
Sbjct 18 IGVRVPAVYEQLIMLRALAETVALIADFGIDEVADIRLALDEVATALLQDAVPGSELDCA 77
Query 78 VDPRKDEVVVEASAACDTHDVVAPG--SFSWHVLTALADDVQTFHDGRQPDVAG 129
DE ++ + + T P SF WH+++ L D V T R G
Sbjct 78 F--SYDETTMDITVSAVTVSETGPDQRSFGWHIVSTLTDSVSTSTGPRDATAGG 129
>gi|126215792|gb|ABN81016.1| putative anti-sigma factor [Rhodococcus opacus]
Length=142
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/116 (36%), Positives = 55/116 (48%), Gaps = 0/116 (0%)
Query 2 ADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVC 61
A+ D + + R VEL VAA E L ++R + + D D VAD++LAVDEVC
Sbjct 1 AEVDEVRRMKTRSGVPVELRVAAEFEQLPVVRAVAETLAVLGDFTLDDVADIKLAVDEVC 60
Query 62 TRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQ 117
+ LI +A A L + + V SA V SF WHVL L + V
Sbjct 61 SELIAAAPGSAELTCSFAVTETGLHVTISAPLTRGGVPNRESFGWHVLETLMNAVS 116
>gi|117927773|ref|YP_872324.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Acidothermus cellulolyticus 11B]
gi|117648236|gb|ABK52338.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Acidothermus cellulolyticus 11B]
Length=138
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/114 (36%), Positives = 60/114 (53%), Gaps = 5/114 (4%)
Query 14 GVR-AVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDA 72
G+R V + + A LA+LRT ++ D D + DLR+AVDE C+ L+ ++ PDA
Sbjct 15 GIRDLVTIELPATAAYLAVLRTTTASLAARLDFTLDDIEDLRIAVDEACSLLLGTSPPDA 74
Query 73 TLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQT--FHDGRQ 124
+ + D + + +A V SF+W+VL ALA V+T DGRQ
Sbjct 75 VMSCAFELTGDGLEITVTAPGTRS--VPKDSFAWNVLAALAGHVETRAESDGRQ 126
>gi|226359631|ref|YP_002777409.1| anti-sigma factor [Rhodococcus opacus B4]
gi|226238116|dbj|BAH48464.1| putative anti-sigma factor [Rhodococcus opacus B4]
Length=143
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/117 (35%), Positives = 54/117 (47%), Gaps = 0/117 (0%)
Query 1 MADSDLPTKGRQRGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEV 60
MA+ + + R VEL VAA E L ++R + + D D VAD++LAVDEV
Sbjct 1 MAEVGEVRRMKTRSGVPVELRVAAEFEQLPVVRAVAETLAVLGDFTLDDVADIKLAVDEV 60
Query 61 CTRLIRSALPDATLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQ 117
C+ LI + A L + + V SA V SF WHVL L + V
Sbjct 61 CSELIAATPGSAELTCSFAVTETGLHVTISAPLSRRGVPNRESFGWHVLETLMNAVS 117
>gi|300782224|ref|YP_003762515.1| anti-sigma factor [Amycolatopsis mediterranei U32]
gi|299791738|gb|ADJ42113.1| anti-sigma factor [Amycolatopsis mediterranei U32]
gi|340523583|gb|AEK38788.1| anti-sigma factor [Amycolatopsis mediterranei S699]
Length=138
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/114 (36%), Positives = 55/114 (49%), Gaps = 4/114 (3%)
Query 13 RGVRAVELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDA 72
G + +E+ AA + LRT+V I +D D DAV DLR+AVDE C+ L+ A D
Sbjct 10 EGAQVIEVRTAAIPHVVPTLRTIVADIAMRQDFDLDAVEDLRMAVDEACS-LLLPASSDG 68
Query 73 TLRLVVDPRKDEVVVEASAACDTHDVVAPGSFSWHVLTALADDVQ---TFHDGR 123
L V + V S D+ D SW +LTALA + T +GR
Sbjct 69 RLTCVFSWNGPRIEVSVSVLADSADHEDDAGLSWQLLTALATTAERTITPENGR 122
>gi|158312829|ref|YP_001505337.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Frankia sp. EAN1pec]
gi|158108234|gb|ABW10431.1| putative anti-sigma regulatory factor, serine/threonine protein
kinase [Frankia sp. EAN1pec]
Length=178
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/128 (35%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query 18 VELNVAARLENLALLRTLVGAIGTFEDLDFDAVADLRLAVDEVCTRLIRSALPDATL--R 75
V+L + A L +LRT ++ D D + DLR+AVDE C L+ SA+P ++L R
Sbjct 30 VQLTLPAASAYLTVLRTATASLAARLDFTLDDIEDLRIAVDEACALLLVSAVPGSSLECR 89
Query 76 LVVDPRKDEVVVEASAACDTHDVVAPG--SFSWHVLTALADDVQTFHDGRQPDVAGSVFG 133
++P +V+V ++ D P +F+W VLTALA DV + GS
Sbjct 90 FALEPGVMKVLV----TVESLDGEPPSTETFAWTVLTALAGDVSSSTG------PGSRVS 139
Query 134 ITLTARRA 141
I L RR
Sbjct 140 IALQKRRG 147
Lambda K H
0.321 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128154014136
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40