BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3288c Length=137 Score E Sequences producing significant alignments: (Bits) Value gi|15610424|ref|NP_217805.1| hypothetical protein Rv3288c [Mycob... 275 2e-72 gi|340628270|ref|YP_004746722.1| putative protein USFY [Mycobact... 271 2e-71 gi|289448977|ref|ZP_06438721.1| hypothetical protein usfY [Mycob... 228 2e-58 gi|254233898|ref|ZP_04927223.1| hypothetical protein usfY [Mycob... 205 2e-51 gi|342861503|ref|ZP_08718150.1| UsfY protein [Mycobacterium colo... 172 1e-41 gi|183981267|ref|YP_001849558.1| hypothetical protein MMAR_1245 ... 167 5e-40 gi|41409506|ref|NP_962342.1| hypothetical protein MAP3408c [Myco... 166 1e-39 gi|118618110|ref|YP_906442.1| hypothetical protein MUL_2642 [Myc... 164 4e-39 gi|296168910|ref|ZP_06850579.1| UsfY protein [Mycobacterium para... 160 6e-38 gi|254819528|ref|ZP_05224529.1| UsfY protein [Mycobacterium intr... 153 8e-36 gi|240171599|ref|ZP_04750258.1| hypothetical protein MkanA1_1995... 152 1e-35 gi|254820970|ref|ZP_05225971.1| UsfY protein [Mycobacterium intr... 115 2e-24 gi|333991747|ref|YP_004524361.1| hypothetical protein JDM601_310... 108 3e-22 gi|118469227|ref|YP_886163.1| UsfY protein [Mycobacterium smegma... 98.2 4e-19 gi|118472245|ref|YP_886149.1| UsfY protein [Mycobacterium smegma... 95.5 3e-18 gi|145225371|ref|YP_001136049.1| hypothetical protein Mflv_4793 ... 92.8 1e-17 gi|315445719|ref|YP_004078598.1| hypothetical protein Mspyr1_420... 91.3 5e-17 gi|120402661|ref|YP_952490.1| putative protein UsfY [Mycobacteri... 90.5 8e-17 gi|126433906|ref|YP_001069597.1| hypothetical protein Mjls_1304 ... 86.7 1e-15 gi|108798246|ref|YP_638443.1| hypothetical protein Mmcs_1275 [My... 86.7 1e-15 gi|240170046|ref|ZP_04748705.1| putative protein UsfY [Mycobacte... 82.8 1e-14 gi|126433523|ref|YP_001069214.1| hypothetical protein Mjls_0914 ... 76.6 1e-12 gi|118471198|ref|YP_886141.1| UsfY protein [Mycobacterium smegma... 75.1 3e-12 gi|118470153|ref|YP_888681.1| UsfY protein [Mycobacterium smegma... 73.2 1e-11 gi|108797882|ref|YP_638079.1| hypothetical protein Mmcs_0907 [My... 70.9 5e-11 gi|145222560|ref|YP_001133238.1| hypothetical protein Mflv_1970 ... 70.9 6e-11 gi|315443008|ref|YP_004075887.1| hypothetical protein Mspyr1_137... 70.9 6e-11 gi|169629605|ref|YP_001703254.1| hypothetical protein MAB_2519c ... 62.0 3e-08 gi|120405694|ref|YP_955523.1| hypothetical protein Mvan_4744 [My... 62.0 3e-08 gi|342862210|ref|ZP_08718852.1| UsfY protein [Mycobacterium colo... 57.4 7e-07 gi|296170551|ref|ZP_06852135.1| UsfY protein [Mycobacterium para... 57.0 8e-07 gi|254820281|ref|ZP_05225282.1| hypothetical protein MintA_10151... 56.2 1e-06 gi|54024669|ref|YP_118911.1| hypothetical protein nfa27000 [Noca... 55.1 3e-06 gi|296166746|ref|ZP_06849170.1| conserved hypothetical protein [... 54.3 6e-06 gi|111017128|ref|YP_700100.1| hypothetical protein RHA1_ro00106 ... 53.1 1e-05 gi|312140028|ref|YP_004007364.1| integral membrane protein [Rhod... 49.7 1e-04 gi|342861971|ref|ZP_08718615.1| hypothetical protein MCOL_23890 ... 48.5 4e-04 gi|312139986|ref|YP_004007322.1| integral membrane protein [Rhod... 47.0 8e-04 gi|325674496|ref|ZP_08154184.1| hypothetical protein HMPREF0724_... 43.5 0.010 gi|41406481|ref|NP_959317.1| hypothetical protein MAP0383 [Mycob... 42.7 0.015 gi|336460842|gb|EGO39727.1| hypothetical protein MAPs_36640 [Myc... 42.7 0.019 gi|118463959|ref|YP_879722.1| hypothetical protein MAV_0438 [Myc... 42.4 0.026 gi|254773444|ref|ZP_05214960.1| hypothetical protein MaviaA2_020... 42.4 0.026 gi|254775413|ref|ZP_05216929.1| hypothetical protein MaviaA2_121... 41.6 0.037 gi|229491656|ref|ZP_04385477.1| conserved hypothetical protein [... 41.6 0.037 gi|118466625|ref|YP_882124.1| hypothetical protein MAV_2939 [Myc... 41.2 0.057 gi|41407594|ref|NP_960430.1| hypothetical protein MAP1496c [Myco... 41.2 0.058 gi|254823276|ref|ZP_05228277.1| UsfY protein [Mycobacterium intr... 38.5 0.30 gi|226359637|ref|YP_002777415.1| hypothetical protein ROP_02230 ... 37.7 0.61 gi|126696070|ref|YP_001090956.1| putative transcripton factor [P... 37.0 0.87 >gi|15610424|ref|NP_217805.1| hypothetical protein Rv3288c [Mycobacterium tuberculosis H37Rv] gi|15842879|ref|NP_337916.1| hypothetical protein MT3387 [Mycobacterium tuberculosis CDC1551] gi|31794468|ref|NP_856961.1| hypothetical protein Mb3316c [Mycobacterium bovis AF2122/97] 48 more sequence titles Length=137 Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 137/137 (100%), Positives = 137/137 (100%), Gaps = 0/137 (0%) Query 1 MGQIPPQPVRRVLPLMVVPGNGQKWRNRTETEEAMGDTYRDPVDHLRTTRPLAGESLIDV 60 MGQIPPQPVRRVLPLMVVPGNGQKWRNRTETEEAMGDTYRDPVDHLRTTRPLAGESLIDV Sbjct 1 MGQIPPQPVRRVLPLMVVPGNGQKWRNRTETEEAMGDTYRDPVDHLRTTRPLAGESLIDV 60 Query 61 VHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHRRIRKIA 120 VHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHRRIRKIA Sbjct 61 VHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHRRIRKIA 120 Query 121 DRWYTEHPEVRRQRLAG 137 DRWYTEHPEVRRQRLAG Sbjct 121 DRWYTEHPEVRRQRLAG 137 >gi|340628270|ref|YP_004746722.1| putative protein USFY [Mycobacterium canettii CIPT 140010059] gi|340006460|emb|CCC45642.1| putative protein USFY [Mycobacterium canettii CIPT 140010059] Length=137 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 136/137 (99%), Positives = 136/137 (99%), Gaps = 0/137 (0%) Query 1 MGQIPPQPVRRVLPLMVVPGNGQKWRNRTETEEAMGDTYRDPVDHLRTTRPLAGESLIDV 60 MG IPPQPVRRVLPLMVVPGNGQKWRNRTETEEAMGDTYRDPVDHLRTTRPLAGESLIDV Sbjct 1 MGPIPPQPVRRVLPLMVVPGNGQKWRNRTETEEAMGDTYRDPVDHLRTTRPLAGESLIDV 60 Query 61 VHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHRRIRKIA 120 VHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHRRIRKIA Sbjct 61 VHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHRRIRKIA 120 Query 121 DRWYTEHPEVRRQRLAG 137 DRWYTEHPEVRRQRLAG Sbjct 121 DRWYTEHPEVRRQRLAG 137 >gi|289448977|ref|ZP_06438721.1| hypothetical protein usfY [Mycobacterium tuberculosis CPHL_A] gi|289421935|gb|EFD19136.1| hypothetical protein usfY [Mycobacterium tuberculosis CPHL_A] Length=114 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 114/114 (100%), Positives = 114/114 (100%), Gaps = 0/114 (0%) Query 1 MGQIPPQPVRRVLPLMVVPGNGQKWRNRTETEEAMGDTYRDPVDHLRTTRPLAGESLIDV 60 MGQIPPQPVRRVLPLMVVPGNGQKWRNRTETEEAMGDTYRDPVDHLRTTRPLAGESLIDV Sbjct 1 MGQIPPQPVRRVLPLMVVPGNGQKWRNRTETEEAMGDTYRDPVDHLRTTRPLAGESLIDV 60 Query 61 VHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHR 114 VHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHR Sbjct 61 VHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHR 114 >gi|254233898|ref|ZP_04927223.1| hypothetical protein usfY [Mycobacterium tuberculosis C] gi|308232408|ref|ZP_07415954.2| hypothetical protein usfY [Mycobacterium tuberculosis SUMu001] gi|308370217|ref|ZP_07420676.2| hypothetical protein usfY [Mycobacterium tuberculosis SUMu002] 27 more sequence titles Length=103 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF Sbjct 1 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLAG 137 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLAG Sbjct 61 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLAG 103 >gi|342861503|ref|ZP_08718150.1| UsfY protein [Mycobacterium colombiense CECT 3035] gi|342130992|gb|EGT84281.1| UsfY protein [Mycobacterium colombiense CECT 3035] Length=103 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 80/99 (81%), Positives = 89/99 (90%), Gaps = 0/99 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDTY DPVDHLRTTRPLAGESLIDV+HWPGYLL+VAGV+G G+LAAFG+GHH EGMT Sbjct 1 MGDTYHDPVDHLRTTRPLAGESLIDVLHWPGYLLVVAGVIGACGSLAAFGSGHHHEGMTA 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQ 133 G+VA++ V+GLAWLA EHRRIRKIADRWY EHPEV RQ Sbjct 61 GIVAVIAAVLGLAWLAVEHRRIRKIADRWYAEHPEVHRQ 99 >gi|183981267|ref|YP_001849558.1| hypothetical protein MMAR_1245 [Mycobacterium marinum M] gi|183174593|gb|ACC39703.1| mycobacterial conserved protein, UsfY [Mycobacterium marinum M] Length=103 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 88/103 (86%), Positives = 97/103 (95%), Gaps = 0/103 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGYLL+VAGV+GGVG+LAAFGTGHH+EGM Sbjct 1 MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYLLVVAGVIGGVGSLAAFGTGHHSEGMAS 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLAG 137 GVVA+ V VVGL WLAFEHRR+R+IADRWY+EHPEVRRQRLA Sbjct 61 GVVALTVAVVGLIWLAFEHRRVRRIADRWYSEHPEVRRQRLAS 103 >gi|41409506|ref|NP_962342.1| hypothetical protein MAP3408c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118465996|ref|YP_883401.1| UsfY protein [Mycobacterium avium 104] gi|254776695|ref|ZP_05218211.1| UsfY protein [Mycobacterium avium subsp. avium ATCC 25291] gi|41398337|gb|AAS05958.1| hypothetical protein MAP_3408c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167283|gb|ABK68180.1| UsfY protein [Mycobacterium avium 104] gi|336459628|gb|EGO38563.1| hypothetical protein MAPs_01480 [Mycobacterium avium subsp. paratuberculosis S397] Length=103 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 78/99 (79%), Positives = 86/99 (87%), Gaps = 0/99 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDT+ DPVDHLRTTRPLAGESLIDV+HWPGYLL+VAGVVG G+LAAF TGHH EGMT Sbjct 1 MGDTFHDPVDHLRTTRPLAGESLIDVLHWPGYLLVVAGVVGACGSLAAFATGHHHEGMTA 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQ 133 GV A++ V+GL WLA EHRRIR+IADRWY EHPEV RQ Sbjct 61 GVTAVIAAVLGLVWLAVEHRRIRRIADRWYAEHPEVHRQ 99 >gi|118618110|ref|YP_906442.1| hypothetical protein MUL_2642 [Mycobacterium ulcerans Agy99] gi|118570220|gb|ABL04971.1| mycobacterial conserved protein, UsfY [Mycobacterium ulcerans Agy99] Length=103 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 87/103 (85%), Positives = 96/103 (94%), Gaps = 0/103 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGYLL+VAGV+GGVG+LAAFGTGHH+EGM Sbjct 1 MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYLLVVAGVIGGVGSLAAFGTGHHSEGMAS 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLAG 137 GVVA+ V VVGL WLAFEHRR+R+IADRWY+ HPEVRRQRLA Sbjct 61 GVVALTVAVVGLIWLAFEHRRVRRIADRWYSGHPEVRRQRLAS 103 >gi|296168910|ref|ZP_06850579.1| UsfY protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896379|gb|EFG76032.1| UsfY protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=103 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 74/99 (75%), Positives = 86/99 (87%), Gaps = 0/99 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDT+ DPVDHLRTTRPLAGESLIDV+HWPGYLL+VAGVVG G+LAAFG+GHH EGMT Sbjct 1 MGDTFHDPVDHLRTTRPLAGESLIDVLHWPGYLLVVAGVVGACGSLAAFGSGHHNEGMTA 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQ 133 GV+A++ V+GL W+ EH RIR+IA+RWY EHPEV RQ Sbjct 61 GVLAVIAAVLGLVWVGLEHWRIRRIAERWYAEHPEVHRQ 99 >gi|254819528|ref|ZP_05224529.1| UsfY protein [Mycobacterium intracellulare ATCC 13950] Length=103 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 79/102 (78%), Positives = 88/102 (87%), Gaps = 0/102 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDTY DPVDHLRTTRPLAGESLIDV+HWPGYLL+VAGV+G G+LAAF TGHH EGMT Sbjct 1 MGDTYHDPVDHLRTTRPLAGESLIDVLHWPGYLLVVAGVIGTCGSLAAFATGHHHEGMTA 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136 GV A+V V+GL WL EHRRIR++ADRWY+EHPEV RQR A Sbjct 61 GVTAVVAAVLGLIWLGLEHRRIRRLADRWYSEHPEVLRQRPA 102 >gi|240171599|ref|ZP_04750258.1| hypothetical protein MkanA1_19953 [Mycobacterium kansasii ATCC 12478] Length=103 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/103 (80%), Positives = 92/103 (90%), Gaps = 0/103 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDTYRDPVDHL TTRPLAGESLIDV+HWPGYLL+VAGV+GGVG+LAAFGTGH ++GM Sbjct 1 MGDTYRDPVDHLHTTRPLAGESLIDVLHWPGYLLVVAGVIGGVGSLAAFGTGHDSQGMVA 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLAG 137 GV A+VVTV GL WLA EHRR+R+IA+RWY EHPEV RQRLA Sbjct 61 GVAALVVTVAGLVWLAVEHRRVRRIAERWYAEHPEVPRQRLAS 103 >gi|254820970|ref|ZP_05225971.1| UsfY protein [Mycobacterium intracellulare ATCC 13950] Length=103 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 57/102 (56%), Positives = 69/102 (68%), Gaps = 0/102 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDT+RDP+DH RTTRP AGESLIDV+ WPGYL ++ GV+ L A GTGH + Sbjct 1 MGDTFRDPIDHARTTRPHAGESLIDVMSWPGYLFMLVGVIAVFRCLVALGTGHEGRSLIG 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136 G +AI VGL WL E R+RK+ +RWY EHP+ RQR A Sbjct 61 GAIAIAAITVGLVWLKVERGRVRKLGNRWYDEHPDAHRQRPA 102 >gi|333991747|ref|YP_004524361.1| hypothetical protein JDM601_3107 [Mycobacterium sp. JDM601] gi|333487715|gb|AEF37107.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=103 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/103 (51%), Positives = 70/103 (68%), Gaps = 0/103 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDT+ DPVDH+RTTRP AG ++IDV+ WPGY L+V G+V G+G L AF TGH +G+ Sbjct 1 MGDTFHDPVDHVRTTRPHAGRAVIDVMGWPGYSLLVVGMVAGIGCLTAFATGHDRQGVAV 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLAG 137 +A+ +G WL EHRRI ++ +W HPE++RQ G Sbjct 61 AALAVFAAGLGALWLLMEHRRIGRVNQQWQLAHPELQRQHSTG 103 >gi|118469227|ref|YP_886163.1| UsfY protein [Mycobacterium smegmatis str. MC2 155] gi|118170514|gb|ABK71410.1| UsfY protein [Mycobacterium smegmatis str. MC2 155] Length=102 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 50/94 (54%), Positives = 62/94 (66%), Gaps = 0/94 (0%) Query 40 RDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAI 99 +DPVDH RTTRP AGES+ D + P ++I +V VG+LAAF T HH G+T +A Sbjct 5 KDPVDHARTTRPHAGESMKDNMIMPALIVIGLALVTFVGSLAAFATKHHDVGLTLVSLAA 64 Query 100 VVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQ 133 VVG WLA EH R+R+I +RWY EHP V RQ Sbjct 65 AGFVVGALWLALEHLRVRRIEERWYAEHPGVMRQ 98 >gi|118472245|ref|YP_886149.1| UsfY protein [Mycobacterium smegmatis str. MC2 155] gi|118173532|gb|ABK74428.1| UsfY protein [Mycobacterium smegmatis str. MC2 155] Length=101 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/100 (48%), Positives = 59/100 (59%), Gaps = 0/100 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDT +DPVDH RTTRP AGE+L D + P +L+ G V V L AF T H G+ Sbjct 1 MGDTAKDPVDHARTTRPHAGETLKDTANIPALILLFLGGVSFVSCLFAFSTSHETVGIVL 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQR 134 VVA ++ VV AWL EHRR+ +W HPEV + R Sbjct 61 AVVAALLFVVSGAWLVVEHRRVTHKERQWNAAHPEVHQSR 100 >gi|145225371|ref|YP_001136049.1| hypothetical protein Mflv_4793 [Mycobacterium gilvum PYR-GCK] gi|145217857|gb|ABP47261.1| putative protein UsfY [Mycobacterium gilvum PYR-GCK] Length=102 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/94 (49%), Positives = 60/94 (64%), Gaps = 0/94 (0%) Query 41 DPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIV 100 DPVDH+RTTRP AGES+ D PG ++I +V V L+AF T HH G+ G +A Sbjct 6 DPVDHVRTTRPHAGESMKDNKIMPGLVVIGLSLVSFVAMLSAFATSHHDVGVMLGAIAAA 65 Query 101 VTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQR 134 V+G WL EH+R+R++ +RWY EHP RQR Sbjct 66 GFVLGGGWLFIEHQRVRRLEERWYAEHPGAWRQR 99 >gi|315445719|ref|YP_004078598.1| hypothetical protein Mspyr1_42030 [Mycobacterium sp. Spyr1] gi|315264022|gb|ADU00764.1| hypothetical protein Mspyr1_42030 [Mycobacterium sp. Spyr1] Length=102 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/94 (49%), Positives = 60/94 (64%), Gaps = 0/94 (0%) Query 41 DPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIV 100 DPVDH+RTTRP AGES+ D PG ++I +V V L+AF T HH G+ G +A Sbjct 6 DPVDHVRTTRPHAGESMKDNKIMPGLVVIGLSLVIFVAMLSAFATSHHDVGVMLGAIAAA 65 Query 101 VTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQR 134 V+G WL EH+R+R++ +RWY EHP RQR Sbjct 66 GFVLGGGWLFIEHQRVRRLEERWYAEHPGAWRQR 99 >gi|120402661|ref|YP_952490.1| putative protein UsfY [Mycobacterium vanbaalenii PYR-1] gi|119955479|gb|ABM12484.1| putative protein UsfY [Mycobacterium vanbaalenii PYR-1] Length=102 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 47/95 (50%), Positives = 59/95 (63%), Gaps = 0/95 (0%) Query 40 RDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAI 99 DPVDH+RTTRP AGES+ D PG ++I +V V ALAAF T +H G+ G + + Sbjct 5 NDPVDHVRTTRPHAGESMKDNKIMPGLVVIGLALVSFVSALAAFATVNHDVGVMLGALGL 64 Query 100 VVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQR 134 VVG WL EH R+R + D WY +HP V RQR Sbjct 65 AGFVVGGGWLMIEHHRVRHLEDVWYAQHPGVPRQR 99 >gi|126433906|ref|YP_001069597.1| hypothetical protein Mjls_1304 [Mycobacterium sp. JLS] gi|126233706|gb|ABN97106.1| putative protein UsfY [Mycobacterium sp. JLS] Length=110 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/94 (50%), Positives = 62/94 (66%), Gaps = 0/94 (0%) Query 41 DPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIV 100 DPVDH RTTRP AGE++ D + P +L+ +V V ALAA T +H G+ G ++ V Sbjct 14 DPVDHARTTRPHAGETMKDTKNMPALVLLGFALVTFVAALAAHATANHTVGVIVGCISAV 73 Query 101 VTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQR 134 + VV AW EHRR++ I +RWY EHPEV+RQR Sbjct 74 LFVVAGAWFLIEHRRVKGIEERWYAEHPEVQRQR 107 >gi|108798246|ref|YP_638443.1| hypothetical protein Mmcs_1275 [Mycobacterium sp. MCS] gi|119867342|ref|YP_937294.1| hypothetical protein Mkms_1292 [Mycobacterium sp. KMS] gi|108768665|gb|ABG07387.1| putative protein UsfY [Mycobacterium sp. MCS] gi|119693431|gb|ABL90504.1| putative protein UsfY [Mycobacterium sp. KMS] Length=102 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/94 (50%), Positives = 62/94 (66%), Gaps = 0/94 (0%) Query 41 DPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIV 100 DPVDH RTTRP AGE++ D + P +L+ +V V ALAA T +H G+ G ++ V Sbjct 6 DPVDHARTTRPHAGETMKDTKNMPALVLLGFALVTFVAALAAHATANHTVGVIVGCISAV 65 Query 101 VTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQR 134 + VV AW EHRR++ I +RWY EHPEV+RQR Sbjct 66 LFVVAGAWFLIEHRRVKGIEERWYAEHPEVQRQR 99 >gi|240170046|ref|ZP_04748705.1| putative protein UsfY [Mycobacterium kansasii ATCC 12478] Length=104 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 0/100 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 M YRDPV+H RTT+P AGES ID + PG LIV GV+G G +A+ H +T Sbjct 1 MKGAYRDPVEHSRTTQPHAGESFIDTLWLPGLFLIVLGVIGLAGIVASLAYNHRELLLTL 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQR 134 G A + + G + EH R++++ RW EHP+ RQ+ Sbjct 61 GSAAAGLLIAGGLLIMAEHHRVQRVERRWLAEHPDYWRQQ 100 >gi|126433523|ref|YP_001069214.1| hypothetical protein Mjls_0914 [Mycobacterium sp. JLS] gi|126233323|gb|ABN96723.1| putative protein UsfY [Mycobacterium sp. JLS] Length=102 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/102 (45%), Positives = 59/102 (58%), Gaps = 4/102 (3%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVG--GVGALAAFGTGHHAEGM 92 M + DPVDH RT +P AGES+ID + +PG LLI GV+G + A AA+G GH + Sbjct 1 MKGAHHDPVDHARTYQPRAGESMIDTLWFPGLLLIALGVIGLAAIVASAAYGEGHLVLPL 60 Query 93 TFGVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQR 134 AIV GL +A EHRR+ +I W +EHP+ R Sbjct 61 ALVTGAIVTAGGGL--IALEHRRVLRIERLWQSEHPDTRHHH 100 >gi|118471198|ref|YP_886141.1| UsfY protein [Mycobacterium smegmatis str. MC2 155] gi|118172485|gb|ABK73381.1| UsfY protein [Mycobacterium smegmatis str. MC2 155] Length=99 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/93 (49%), Positives = 57/93 (62%), Gaps = 0/93 (0%) Query 41 DPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIV 100 +PVDH RTTRP AGE++ D + PG +I +V V +L AF T H + G +A V Sbjct 4 EPVDHARTTRPHAGETMKDARNLPGLAIIGVSLVVFVSSLVAFATDHMSIGGMLVGLAAV 63 Query 101 VTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQ 133 VVG AWLA EH R+RK +RWY HP + RQ Sbjct 64 GAVVGGAWLATEHYRVRKNEERWYANHPGIMRQ 96 >gi|118470153|ref|YP_888681.1| UsfY protein [Mycobacterium smegmatis str. MC2 155] gi|118171440|gb|ABK72336.1| UsfY protein [Mycobacterium smegmatis str. MC2 155] Length=100 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/92 (37%), Positives = 52/92 (57%), Gaps = 0/92 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 MGDT DP DH RT +P AG ++ D +WPG +L+V G G +AA + T Sbjct 1 MGDTNLDPADHFRTAQPHAGLAVKDNFYWPGLILLVVAASGLTGVVAATAYRRYEWVSTM 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTE 126 ++A++ + G W E+RR+R+I D+W + Sbjct 61 VLIAVLGAIAGTLWFVMENRRVRRIEDQWTAD 92 >gi|108797882|ref|YP_638079.1| hypothetical protein Mmcs_0907 [Mycobacterium sp. MCS] gi|119866976|ref|YP_936928.1| hypothetical protein Mkms_0924 [Mycobacterium sp. KMS] gi|108768301|gb|ABG07023.1| putative protein UsfY [Mycobacterium sp. MCS] gi|119693065|gb|ABL90138.1| putative protein UsfY [Mycobacterium sp. KMS] Length=102 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/101 (43%), Positives = 57/101 (57%), Gaps = 4/101 (3%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVG--GVGALAAFGTGHHAEGM 92 M + DPVDH RT +P AGES ID + +PG LLI GV+G + A AA+G GH + Sbjct 1 MKGAHHDPVDHARTYQPRAGESFIDTLWFPGLLLIALGVIGLAAIVASAAYGEGHLVLPL 60 Query 93 TFGVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQ 133 AIV GL +A EHRR+ +I W ++H + R Sbjct 61 ALVTGAIVTAGGGL--IALEHRRVLRIERLWQSQHRDTRHH 99 >gi|145222560|ref|YP_001133238.1| hypothetical protein Mflv_1970 [Mycobacterium gilvum PYR-GCK] gi|145215046|gb|ABP44450.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=103 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/99 (38%), Positives = 58/99 (59%), Gaps = 0/99 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 M DT +DPVDH RTTR AGE++ V+ PG + + GV+ V L +F G+ Sbjct 1 MPDTSQDPVDHARTTRQHAGETMKAGVNAPGLIAVGLGVLSLVVGLFSFANSSTITGIVG 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQ 133 V+A+++ GLAWLA HR+++ + W+ +HP+ + Sbjct 61 VVLAVLLIAGGLAWLARTHRKVQLQQEEWHRKHPQAHYE 99 >gi|315443008|ref|YP_004075887.1| hypothetical protein Mspyr1_13740 [Mycobacterium sp. Spyr1] gi|315261311|gb|ADT98052.1| hypothetical protein Mspyr1_13740 [Mycobacterium sp. Spyr1] Length=103 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/99 (38%), Positives = 58/99 (59%), Gaps = 0/99 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 M DT +DPVDH RTTR AGE++ V+ PG + + GV+ V L +F G+ Sbjct 1 MPDTSQDPVDHARTTRQHAGEAMKAGVNAPGLIAVGLGVLSLVVGLFSFANSSTITGIVG 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQ 133 V+A+++ GLAWLA HR+++ + W+ +HP+ + Sbjct 61 VVLAVLLIAGGLAWLARTHRKVQLQQEEWHRKHPQAHYE 99 >gi|169629605|ref|YP_001703254.1| hypothetical protein MAB_2519c [Mycobacterium abscessus ATCC 19977] gi|169241572|emb|CAM62600.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=99 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/93 (44%), Positives = 51/93 (55%), Gaps = 0/93 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 M D DPVDH RT RP AGESL D V WPG I GV+ V LAA + + Sbjct 1 MHDDGIDPVDHARTFRPHAGESLKDRVAWPGLAFIALGVLSVVLGLAAAAYMFYGWTLVA 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEH 127 G+ A+V +G W+ E RR+R++ W+ EH Sbjct 61 GIAALVFFFLGWLWMHVERRRVRRMEAEWHQEH 93 >gi|120405694|ref|YP_955523.1| hypothetical protein Mvan_4744 [Mycobacterium vanbaalenii PYR-1] gi|119958512|gb|ABM15517.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=103 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/96 (43%), Positives = 57/96 (60%), Gaps = 0/96 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 M DT RDPVDH RT R AGE++ V+ PG + + GV+ V L +F G + G+ Sbjct 1 MPDTSRDPVDHARTYRQHAGETMKAGVNAPGLIAVGIGVLSLVIGLFSFANGSRSAGVAA 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEV 130 VVA+++ GLAWLA H +++K W+ EHPE Sbjct 61 VVVAVLLVGGGLAWLARAHHKVQKKQQDWHREHPEA 96 >gi|342862210|ref|ZP_08718852.1| UsfY protein [Mycobacterium colombiense CECT 3035] gi|342130288|gb|EGT83608.1| UsfY protein [Mycobacterium colombiense CECT 3035] Length=129 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/99 (34%), Positives = 46/99 (47%), Gaps = 0/99 (0%) Query 38 TYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVV 97 T DPVDH RT+RPL G++L PG LL+ G+ L F + G+ + Sbjct 5 TAIDPVDHQRTSRPLVGQTLKSPAKEPGLLLMAVGLAAYGICLTCFAHFRYGAGIIAAGI 64 Query 98 AIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136 ++ G AWL E RR+R++ W R LA Sbjct 65 SLAAMAAGGAWLWKEARRVRRLESDWDIGDHRTRPADLA 103 >gi|296170551|ref|ZP_06852135.1| UsfY protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894783|gb|EFG74508.1| UsfY protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=119 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/86 (34%), Positives = 45/86 (53%), Gaps = 0/86 (0%) Query 38 TYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVV 97 T+ D +DH RT+RP G++L P LL+ G+ LA+F G+ ++ Sbjct 5 TFHDTIDHYRTSRPRVGQTLKSPAKEPALLLMAVGLAAYGICLASFADRQVQAGVAAALI 64 Query 98 AIVVTVVGLAWLAFEHRRIRKIADRW 123 ++V G AWL E RR+RK+ D + Sbjct 65 SLVAMTAGGAWLWNEARRLRKLEDDY 90 >gi|254820281|ref|ZP_05225282.1| hypothetical protein MintA_10151 [Mycobacterium intracellulare ATCC 13950] Length=93 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/87 (35%), Positives = 43/87 (50%), Gaps = 0/87 (0%) Query 42 PVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVV 101 PVD RT +S+ D PG +++ A + V +A F G G+ +VA++ Sbjct 5 PVDDDRTVARRGDDSMHDAAQTPGLVVVCAAALAFVVCVANFALGQAHAGVVAAIVAMLA 64 Query 102 TVVGLAWLAFEHRRIRKIADRWYTEHP 128 GLAWLA + RRIR+ W HP Sbjct 65 FGAGLAWLAMDRRRIRQAQREWVIGHP 91 >gi|54024669|ref|YP_118911.1| hypothetical protein nfa27000 [Nocardia farcinica IFM 10152] gi|54016177|dbj|BAD57547.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=103 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/82 (38%), Positives = 46/82 (57%), Gaps = 0/82 (0%) Query 41 DPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIV 100 D DH RT R AGE++ D +WPG +L+ G+V L A G G + G+ A + Sbjct 13 DFPDHARTMRSHAGEAIEDTRNWPGMILVGLGIVTVGLTLVAAGYGFEGWAIIGGIAAAL 72 Query 101 VTVVGLAWLAFEHRRIRKIADR 122 +VG + EHRR++K++DR Sbjct 73 FLIVGAVLILAEHRRVQKLSDR 94 >gi|296166746|ref|ZP_06849170.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897916|gb|EFG77498.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=132 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/89 (38%), Positives = 43/89 (49%), Gaps = 0/89 (0%) Query 41 DPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIV 100 DPVDH RT R AGE++ + PG VV L A TGH A G T V+A V Sbjct 36 DPVDHQRTARRHAGETVTYGANAPGLAGSAVAVVALTVGLFALATGHAAAGWTAVVLAAV 95 Query 101 VTVVGLAWLAFEHRRIRKIADRWYTEHPE 129 + WL HRR+R+ W+ + + Sbjct 96 LGAASAVWLVRTHRRVRETELAWHAANSD 124 >gi|111017128|ref|YP_700100.1| hypothetical protein RHA1_ro00106 [Rhodococcus jostii RHA1] gi|110816658|gb|ABG91942.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=107 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/91 (32%), Positives = 45/91 (50%), Gaps = 0/91 (0%) Query 37 DTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGV 96 ++ P D T R AGE++ D +WPGY+LI AG+ L A G G + G+ Sbjct 14 NSEHHPQDDAHTMRNHAGEAITDSRNWPGYILIAAGIAVLGLTLVAAGYGFEGWALIGGI 73 Query 97 VAIVVTVVGLAWLAFEHRRIRKIADRWYTEH 127 ++ VVG + E RR++ + R T+ Sbjct 74 ACVLCLVVGTGLVLLERRRVKALEGRELTDQ 104 >gi|312140028|ref|YP_004007364.1| integral membrane protein [Rhodococcus equi 103S] gi|311889367|emb|CBH48683.1| putative integral membrane protein [Rhodococcus equi 103S] Length=122 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/124 (30%), Positives = 55/124 (45%), Gaps = 6/124 (4%) Query 4 IPPQPVRRVLPLMVVPGNGQKWRNRTETEEAMGDTYRDPVDHLRTTRPLAGESLIDVVHW 63 +P PVR M+ P R RT + +T+R P+D TTR GES+ D +W Sbjct 2 MPLCPVRPQDTHMLEP------RTRTSRKRVGMNTHRLPLDRAHTTREHPGESIDDTRNW 55 Query 64 PGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHRRIRKIADRW 123 PG LI G+ AL A G G + G + + G + + EH ++ + R Sbjct 56 PGLGLIGLGIATLGMALVAAGYGFEGWAVIAGTACALFFMAGASIVVAEHAHVKHMEHRH 115 Query 124 YTEH 127 +H Sbjct 116 LRDH 119 >gi|342861971|ref|ZP_08718615.1| hypothetical protein MCOL_23890 [Mycobacterium colombiense CECT 3035] gi|342130511|gb|EGT83820.1| hypothetical protein MCOL_23890 [Mycobacterium colombiense CECT 3035] Length=105 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/88 (36%), Positives = 43/88 (49%), Gaps = 0/88 (0%) Query 42 PVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVV 101 P+DH RTTR AGESL + + PG V+ L A GH G +VA+ + Sbjct 10 PIDHARTTRQHAGESLKNGANAPGLAGAAVAVIALTVGLFAVAAGHLVGGAVALLVAVAL 69 Query 102 TVVGLAWLAFEHRRIRKIADRWYTEHPE 129 + AWL HR++R RW+ H + Sbjct 70 GALSAAWLLRAHRKVRDAELRWHAAHSD 97 >gi|312139986|ref|YP_004007322.1| integral membrane protein [Rhodococcus equi 103S] gi|325674539|ref|ZP_08154227.1| hypothetical protein HMPREF0724_12009 [Rhodococcus equi ATCC 33707] gi|311889325|emb|CBH48641.1| putative integral membrane protein [Rhodococcus equi 103S] gi|325554799|gb|EGD24473.1| hypothetical protein HMPREF0724_12009 [Rhodococcus equi ATCC 33707] Length=94 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/88 (33%), Positives = 43/88 (49%), Gaps = 0/88 (0%) Query 40 RDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAI 99 DP D TTR GE++ D +WPGY LI +V L A G G G+V + Sbjct 4 NDPRDLAHTTREHPGEAIEDARNWPGYALIGVAIVTLGLTLVAAGYGFAGWAWIAGIVCV 63 Query 100 VVTVVGLAWLAFEHRRIRKIADRWYTEH 127 + G A + EHRR++++ + T+ Sbjct 64 GALLAGTALVLAEHRRVKRLDNASLTDQ 91 >gi|325674496|ref|ZP_08154184.1| hypothetical protein HMPREF0724_11966 [Rhodococcus equi ATCC 33707] gi|325554756|gb|EGD24430.1| hypothetical protein HMPREF0724_11966 [Rhodococcus equi ATCC 33707] Length=95 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/91 (31%), Positives = 43/91 (48%), Gaps = 0/91 (0%) Query 37 DTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGV 96 +T+R P+D TTR GES+ D +WPG LI G+ AL A G G + G Sbjct 2 NTHRLPLDRAHTTREHPGESIDDTRNWPGLGLIGLGIATLGMALVAAGYGFEGWAVIAGT 61 Query 97 VAIVVTVVGLAWLAFEHRRIRKIADRWYTEH 127 + + G + + EH ++ + R +H Sbjct 62 ACALFFMAGASIVVAEHAHVKHMEHRHLRDH 92 >gi|41406481|ref|NP_959317.1| hypothetical protein MAP0383 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394830|gb|AAS02700.1| hypothetical protein MAP_0383 [Mycobacterium avium subsp. paratuberculosis K-10] Length=114 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/93 (34%), Positives = 43/93 (47%), Gaps = 8/93 (8%) Query 41 DPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIV 100 DPVDH RT R AGE+ + PG VV + A GH +T G +A++ Sbjct 18 DPVDHARTFRQHAGETFTYGANVPGLAGSAVAVVAMTVGVFAVAAGH----LTGGAIALI 73 Query 101 ----VTVVGLAWLAFEHRRIRKIADRWYTEHPE 129 V V WL HR++R+ RW+ H + Sbjct 74 VAAVVGAVSAGWLLRTHRKVREAELRWHAAHSD 106 >gi|336460842|gb|EGO39727.1| hypothetical protein MAPs_36640 [Mycobacterium avium subsp. paratuberculosis S397] Length=105 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/89 (36%), Positives = 41/89 (47%), Gaps = 0/89 (0%) Query 41 DPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIV 100 DPVDH RT R AGE+ + PG VV + A GH G +VA V Sbjct 9 DPVDHARTFRQHAGETFTYGANVPGLAGSAVAVVAMTVGVFAVAAGHLTGGAIALIVAAV 68 Query 101 VTVVGLAWLAFEHRRIRKIADRWYTEHPE 129 V V WL HR++R+ RW+ H + Sbjct 69 VGAVSAGWLLRTHRKVREAELRWHAAHSD 97 >gi|118463959|ref|YP_879722.1| hypothetical protein MAV_0438 [Mycobacterium avium 104] gi|118165246|gb|ABK66143.1| conserved hypothetical protein [Mycobacterium avium 104] Length=103 Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust. Identities = 33/95 (35%), Positives = 41/95 (44%), Gaps = 0/95 (0%) Query 35 MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94 M DPVDH RT R AGE+ + PG VV + A GH G Sbjct 1 MDHRNSDPVDHARTFRQHAGETFTYGANVPGLAGSAVAVVAMTVGVFAVAAGHLTGGAIA 60 Query 95 GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPE 129 +VA VV V WL HR++R RW+ H + Sbjct 61 LIVAAVVGAVSAGWLLRTHRKVRDAELRWHAAHSD 95 >gi|254773444|ref|ZP_05214960.1| hypothetical protein MaviaA2_02031 [Mycobacterium avium subsp. avium ATCC 25291] Length=105 Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust. Identities = 32/89 (36%), Positives = 40/89 (45%), Gaps = 0/89 (0%) Query 41 DPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIV 100 DPVDH RT R AGE+ + PG VV + A GH G +VA V Sbjct 9 DPVDHARTFRQHAGETFTYGANVPGLAGSAVAVVAMTVGVFAVAAGHLTGGAIALIVAAV 68 Query 101 VTVVGLAWLAFEHRRIRKIADRWYTEHPE 129 V V WL HR++R RW+ H + Sbjct 69 VGAVSAGWLLRTHRKVRDAELRWHAAHSD 97 >gi|254775413|ref|ZP_05216929.1| hypothetical protein MaviaA2_12191 [Mycobacterium avium subsp. avium ATCC 25291] Length=96 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 31/91 (35%), Positives = 41/91 (46%), Gaps = 3/91 (3%) Query 41 DPVDHLRTT---RPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVV 97 PV H RT +P+ S D G + V V +A F GH G+T +V Sbjct 4 SPVQHDRTVGRGQPVRYPSARDAAPTSGLAAVGIAAVAFVVCVANFALGHAGAGVTAAIV 63 Query 98 AIVVTVVGLAWLAFEHRRIRKIADRWYTEHP 128 A++ GLAWLA + RRIR+ W P Sbjct 64 AMLAFGAGLAWLAMDRRRIRQEQRDWTISRP 94 >gi|229491656|ref|ZP_04385477.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229321337|gb|EEN87137.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=97 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 29/78 (38%), Positives = 42/78 (54%), Gaps = 0/78 (0%) Query 42 PVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVV 101 PVD T R GE++ D ++PGYLLI G+ L A G G + GVV +V Sbjct 9 PVDDEHTNRSHVGEAISDGRNYPGYLLIGLGLATLGLTLVAAGYGFRGWAVIAGVVCVVS 68 Query 102 TVVGLAWLAFEHRRIRKI 119 +VG + EHRR++++ Sbjct 69 FIVGTLAILMEHRRVKRL 86 >gi|118466625|ref|YP_882124.1| hypothetical protein MAV_2939 [Mycobacterium avium 104] gi|118167912|gb|ABK68809.1| conserved hypothetical protein [Mycobacterium avium 104] Length=91 Score = 41.2 bits (95), Expect = 0.057, Method: Compositional matrix adjust. Identities = 19/46 (42%), Positives = 25/46 (55%), Gaps = 0/46 (0%) Query 83 FGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHP 128 F GH G+T +VA++ GLAWLA + RRIR+ W P Sbjct 44 FALGHAGAGVTAAIVAMLAFGAGLAWLAMDRRRIRQEQRDWTISRP 89 >gi|41407594|ref|NP_960430.1| hypothetical protein MAP1496c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395947|gb|AAS03813.1| hypothetical protein MAP_1496c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336457642|gb|EGO36646.1| hypothetical protein MAPs_21010 [Mycobacterium avium subsp. paratuberculosis S397] Length=96 Score = 41.2 bits (95), Expect = 0.058, Method: Compositional matrix adjust. Identities = 30/91 (33%), Positives = 40/91 (44%), Gaps = 3/91 (3%) Query 41 DPVDHLRTT---RPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVV 97 PV H R +P+ S D G + V V +A F GH G+T +V Sbjct 4 SPVQHARIVGRGQPIRYPSARDAAPTSGLAAVGVAAVAFVVCVANFALGHAGAGVTAAIV 63 Query 98 AIVVTVVGLAWLAFEHRRIRKIADRWYTEHP 128 A++ GLAWLA + RRIR+ W P Sbjct 64 AMLAFGAGLAWLAMDRRRIRQEQRDWTISRP 94 >gi|254823276|ref|ZP_05228277.1| UsfY protein [Mycobacterium intracellulare ATCC 13950] Length=69 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/64 (27%), Positives = 32/64 (50%), Gaps = 0/64 (0%) Query 59 DVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVVTVVGLAWLAFEHRRIRK 118 D WPG++L+ + G + +LA H+ T ++A++ TV W E RR+ Sbjct 3 DNFFWPGFILLGVALCGIIASLAVAAYQHYEWLSTVAIIALLATVAATLWFVVELRRVTL 62 Query 119 IADR 122 + ++ Sbjct 63 LENQ 66 >gi|226359637|ref|YP_002777415.1| hypothetical protein ROP_02230 [Rhodococcus opacus B4] gi|226238122|dbj|BAH48470.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=107 Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/86 (30%), Positives = 40/86 (47%), Gaps = 0/86 (0%) Query 42 PVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTFGVVAIVV 101 P D T R GE++ D +WPGY+LI G+ L A G G + G+ ++ Sbjct 19 PQDDAHTMRNHVGEAITDGRNWPGYILIATGIAVLGLTLVAAGYGFEGWALIGGIACVLC 78 Query 102 TVVGLAWLAFEHRRIRKIADRWYTEH 127 V+G + E RR++ + T+ Sbjct 79 LVLGTVLVLLERRRVKALEGETLTDQ 104 >gi|126696070|ref|YP_001090956.1| putative transcripton factor [Prochlorococcus marinus str. MIT 9301] gi|126543113|gb|ABO17355.1| putative transcripton factor [Prochlorococcus marinus str. MIT 9301] Length=257 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 10/31 (33%), Positives = 22/31 (71%), Gaps = 0/31 (0%) Query 103 VVGLAWLAFEHRRIRKIADRWYTEHPEVRRQ 133 ++ +W+ FE++ +R ++ RWY+E E+R + Sbjct 223 LINFSWIEFENKELRHVSHRWYSESGEIREE 253 Lambda K H 0.323 0.141 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 128325363320 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40