BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3289c Length=125 Score E Sequences producing significant alignments: (Bits) Value gi|15610425|ref|NP_217806.1| transmembrane protein [Mycobacteriu... 244 3e-63 gi|340628271|ref|YP_004746723.1| putative transmembrane protein ... 243 6e-63 gi|41409507|ref|NP_962343.1| hypothetical protein MAP3409c [Myco... 166 8e-40 gi|240171598|ref|ZP_04750257.1| hypothetical protein MkanA1_1994... 162 1e-38 gi|342861504|ref|ZP_08718151.1| hypothetical protein MCOL_21566 ... 161 3e-38 gi|183981266|ref|YP_001849557.1| hypothetical protein MMAR_1244 ... 157 7e-37 gi|118618111|ref|YP_906443.1| hypothetical protein MUL_2643 [Myc... 154 4e-36 gi|254819529|ref|ZP_05224530.1| hypothetical protein MintA_06369... 145 2e-33 gi|118465381|ref|YP_883402.1| hypothetical protein MAV_4261 [Myc... 144 3e-33 gi|296168909|ref|ZP_06850578.1| conserved hypothetical protein [... 143 8e-33 gi|333991748|ref|YP_004524362.1| transmembrane protein [Mycobact... 124 3e-27 gi|118468813|ref|YP_886139.1| hypothetical protein MSMEG_1767 [M... 77.0 8e-13 gi|126433905|ref|YP_001069596.1| hypothetical protein Mjls_1303 ... 75.9 2e-12 gi|108798245|ref|YP_638442.1| hypothetical protein Mmcs_1274 [My... 75.9 2e-12 gi|120402660|ref|YP_952489.1| hypothetical protein Mvan_1654 [My... 75.5 2e-12 gi|145225372|ref|YP_001136050.1| hypothetical protein Mflv_4794 ... 59.7 1e-07 gi|118470066|ref|YP_885012.1| hypothetical protein MSMEG_0601 [M... 58.2 4e-07 gi|312138454|ref|YP_004005790.1| integral membrane protein [Rhod... 55.1 4e-06 gi|111022439|ref|YP_705411.1| hypothetical protein RHA1_ro05473 ... 52.0 3e-05 gi|343924779|ref|ZP_08764318.1| hypothetical protein GOALK_026_0... 49.3 2e-04 gi|262201441|ref|YP_003272649.1| hypothetical protein Gbro_1478 ... 47.4 7e-04 gi|108797342|ref|YP_637539.1| hypothetical protein Mmcs_0362 [My... 46.2 0.002 gi|343925236|ref|ZP_08764763.1| hypothetical protein GOALK_038_0... 45.1 0.004 gi|326383782|ref|ZP_08205467.1| hypothetical protein SCNU_12632 ... 44.7 0.005 gi|120401427|ref|YP_951256.1| hypothetical protein Mvan_0402 [My... 43.1 0.013 gi|333921086|ref|YP_004494667.1| hypothetical protein AS9A_3426 ... 42.7 0.018 gi|145220944|ref|YP_001131622.1| hypothetical protein Mflv_0340 ... 42.4 0.021 gi|169629607|ref|YP_001703256.1| hypothetical protein MAB_2521c ... 40.8 0.071 gi|111025182|ref|YP_707602.1| hypothetical protein RHA1_ro08400 ... 40.0 0.10 gi|344248527|gb|EGW04631.1| Protein shisa-2-like [Cricetulus gri... 35.0 3.9 gi|26352552|dbj|BAC39906.1| unnamed protein product [Mus musculus] 34.7 4.7 gi|21703918|ref|NP_663438.1| protein shisa-2 homolog precursor [... 34.7 4.7 gi|300794277|ref|NP_001178865.1| protein shisa-2 homolog [Rattus... 34.7 5.2 >gi|15610425|ref|NP_217806.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15842880|ref|NP_337917.1| hypothetical protein MT3388 [Mycobacterium tuberculosis CDC1551] gi|31794469|ref|NP_856962.1| transmembrane protein [Mycobacterium bovis AF2122/97] 76 more sequence titles Length=125 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%) Query 1 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSGVDTAACGPPQ 60 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSGVDTAACGPPQ Sbjct 1 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSGVDTAACGPPQ 60 Query 61 RILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPIAG 120 RILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPIAG Sbjct 61 RILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPIAG 120 Query 121 PVMAP 125 PVMAP Sbjct 121 PVMAP 125 >gi|340628271|ref|YP_004746723.1| putative transmembrane protein [Mycobacterium canettii CIPT 140010059] gi|340006461|emb|CCC45643.1| putative transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=125 Score = 243 bits (620), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 124/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%) Query 1 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSGVDTAACGPPQ 60 MHEVGGPSRGDRLG+DDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSGVDTAACGPPQ Sbjct 1 MHEVGGPSRGDRLGQDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSGVDTAACGPPQ 60 Query 61 RILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPIAG 120 RILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPIAG Sbjct 61 RILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPIAG 120 Query 121 PVMAP 125 PVMAP Sbjct 121 PVMAP 125 >gi|41409507|ref|NP_962343.1| hypothetical protein MAP3409c [Mycobacterium avium subsp. paratuberculosis K-10] gi|254776696|ref|ZP_05218212.1| hypothetical protein MaviaA2_18796 [Mycobacterium avium subsp. avium ATCC 25291] gi|41398338|gb|AAS05959.1| hypothetical protein MAP_3409c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459627|gb|EGO38562.1| hypothetical protein MAPs_01470 [Mycobacterium avium subsp. paratuberculosis S397] Length=127 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 84/126 (67%), Positives = 99/126 (79%), Gaps = 2/126 (1%) Query 1 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTC--SGVDTAACGP 58 M + S GDRLG++D EVH+AIRFAV+ A VGFL++ A+ VSTC GVDT ACGP Sbjct 1 MQKADERSGGDRLGQEDREVHAAIRFAVLCAAGAVGFLLIAAVWVSTCPTGGVDTVACGP 60 Query 59 PQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPI 118 PQR LLA GGPLI A G+WAF+RTYRVW+A GTWWGWHGAGWFLLT+M L + +GV PI Sbjct 61 PQRTLLAFGGPLIALAGGIWAFVRTYRVWKARGTWWGWHGAGWFLLTVMALMVAMGVAPI 120 Query 119 AGPVMA 124 AGPV+A Sbjct 121 AGPVLA 126 >gi|240171598|ref|ZP_04750257.1| hypothetical protein MkanA1_19948 [Mycobacterium kansasii ATCC 12478] Length=130 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/126 (70%), Positives = 104/126 (83%), Gaps = 2/126 (1%) Query 1 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTC--SGVDTAACGP 58 M + S GDRLG+DD+EV +AIRFAV+AA GVGF+IM AL VSTC +G+DT ACGP Sbjct 1 MQKTRERSPGDRLGQDDAEVRAAIRFAVLAAAAGVGFVIMAALWVSTCGGAGLDTVACGP 60 Query 59 PQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPI 118 P+R LLA GGPLIL A G+WAF+RTY+VWRA GTWWGWHGAGWFLLTLMV+ + +GVPPI Sbjct 61 PERTLLAFGGPLILLAGGIWAFIRTYQVWRARGTWWGWHGAGWFLLTLMVVAVSMGVPPI 120 Query 119 AGPVMA 124 AGP +A Sbjct 121 AGPALA 126 >gi|342861504|ref|ZP_08718151.1| hypothetical protein MCOL_21566 [Mycobacterium colombiense CECT 3035] gi|342130993|gb|EGT84282.1| hypothetical protein MCOL_21566 [Mycobacterium colombiense CECT 3035] Length=127 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 80/126 (64%), Positives = 96/126 (77%), Gaps = 2/126 (1%) Query 1 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSGV--DTAACGP 58 M + S GDRLG++D EVH+AIRFAV++ + VGFL++ A+ VSTC GV DT ACG Sbjct 1 MQKADARSGGDRLGQEDGEVHAAIRFAVLSTLAAVGFLLIAAVWVSTCPGVSVDTVACGA 60 Query 59 PQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPI 118 PQR LLA GGPLI AG+WAF+RTY VW+A GTWW WHGAGWFLLT M L + +GV PI Sbjct 61 PQRTLLAFGGPLIALVAGIWAFVRTYLVWKARGTWWAWHGAGWFLLTAMALMIAMGVAPI 120 Query 119 AGPVMA 124 AGPV+A Sbjct 121 AGPVLA 126 >gi|183981266|ref|YP_001849557.1| hypothetical protein MMAR_1244 [Mycobacterium marinum M] gi|183174592|gb|ACC39702.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=128 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 90/127 (71%), Positives = 101/127 (80%), Gaps = 3/127 (2%) Query 1 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTC---SGVDTAACG 57 M V S GDRLG+DD EV +AIRFA +AA GVGFLIM AL VSTC +GVDTAACG Sbjct 1 MQRVHERSDGDRLGQDDEEVRAAIRFAALAASAGVGFLIMAALWVSTCGGRAGVDTAACG 60 Query 58 PPQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPP 117 P+R LLALG P IL A+G+WAF+RTYRVWR GTWWGWHGAGWFLLTLMV+ L +GVP Sbjct 61 MPERTLLALGAPAILFASGIWAFVRTYRVWRDGGTWWGWHGAGWFLLTLMVVALSLGVPS 120 Query 118 IAGPVMA 124 IAGPV+A Sbjct 121 IAGPVLA 127 >gi|118618111|ref|YP_906443.1| hypothetical protein MUL_2643 [Mycobacterium ulcerans Agy99] gi|118570221|gb|ABL04972.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=128 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/127 (70%), Positives = 101/127 (80%), Gaps = 3/127 (2%) Query 1 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTC---SGVDTAACG 57 M V S GDRLG+DD +V +AIRFA +AA GVGFLIM AL VSTC +GVDTAACG Sbjct 1 MQRVHERSDGDRLGQDDEQVRAAIRFAALAASAGVGFLIMAALWVSTCGGRAGVDTAACG 60 Query 58 PPQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPP 117 P+R LLALG P IL A+G+WAF+RTYRVWR GTWWGWHGAGWFLLTLMV+ + +GVP Sbjct 61 MPERTLLALGAPAILFASGIWAFVRTYRVWRDGGTWWGWHGAGWFLLTLMVVAVSLGVPS 120 Query 118 IAGPVMA 124 IAGPV+A Sbjct 121 IAGPVLA 127 >gi|254819529|ref|ZP_05224530.1| hypothetical protein MintA_06369 [Mycobacterium intracellulare ATCC 13950] Length=127 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/126 (63%), Positives = 96/126 (77%), Gaps = 2/126 (1%) Query 1 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTC--SGVDTAACGP 58 M + G GDRLG++D EV +A+RFA A VGFL++ A+ VSTC GVDT ACGP Sbjct 1 MQKAGQRPGGDRLGQEDREVLAAVRFAAAATAGAVGFLLIAAVWVSTCPAGGVDTVACGP 60 Query 59 PQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPI 118 PQR LLA+GGP+I A G+WAF+RTYRVW+A GTWWGW GAGWFLLT+M L + +GV PI Sbjct 61 PQRTLLAIGGPMIALAGGIWAFVRTYRVWKARGTWWGWQGAGWFLLTVMALMVAMGVAPI 120 Query 119 AGPVMA 124 AGPV+A Sbjct 121 AGPVLA 126 >gi|118465381|ref|YP_883402.1| hypothetical protein MAV_4261 [Mycobacterium avium 104] gi|118166668|gb|ABK67565.1| conserved hypothetical protein [Mycobacterium avium 104] Length=108 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 74/107 (70%), Positives = 87/107 (82%), Gaps = 2/107 (1%) Query 20 VHSAIRFAVVAAVVGVGFLIMGALLVSTC--SGVDTAACGPPQRILLALGGPLILCAAGL 77 +H+AIRFAV+ A VGFL++ A+ VSTC GVDT ACGPPQR LLA GGPLI A G+ Sbjct 1 MHAAIRFAVLCAAGAVGFLLIAAVWVSTCPTGGVDTVACGPPQRTLLAFGGPLIALAGGI 60 Query 78 WAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPIAGPVMA 124 WAF+RTYRVW+A GTWWGWHGAGWFLLT+M L + +GV PIAGPV+A Sbjct 61 WAFVRTYRVWKARGTWWGWHGAGWFLLTVMALMVAMGVAPIAGPVLA 107 >gi|296168909|ref|ZP_06850578.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896378|gb|EFG76031.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=127 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 89/125 (72%), Positives = 98/125 (79%), Gaps = 2/125 (1%) Query 1 MHEVGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTC--SGVDTAACGP 58 MH+ S GDRLG++D EV +AIRFA AA VGF++M AL VSTC GVDT ACG Sbjct 1 MHKAEERSGGDRLGQEDREVRAAIRFAATAAAAAVGFVVMAALWVSTCPGDGVDTVACGA 60 Query 59 PQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPI 118 PQR LLALGGPLIL AAGLWAFLRTYRVW+AEG WWGWHGAGWFL TLMVLT +GV PI Sbjct 61 PQRTLLALGGPLILLAAGLWAFLRTYRVWKAEGAWWGWHGAGWFLFTLMVLTGALGVAPI 120 Query 119 AGPVM 123 AGP + Sbjct 121 AGPAL 125 >gi|333991748|ref|YP_004524362.1| transmembrane protein [Mycobacterium sp. JDM601] gi|333487716|gb|AEF37108.1| transmembrane protein [Mycobacterium sp. JDM601] Length=123 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 62/115 (54%), Positives = 79/115 (69%), Gaps = 4/115 (3%) Query 10 GDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSG----VDTAACGPPQRILLA 65 GDRLG++D+EV SA+RFA V +GV +++ A S+C V T ACG P R +LA Sbjct 7 GDRLGQEDAEVRSAVRFAGVITAIGVAVVLLAAWWASSCDASTATVQTVACGRPYRAVLA 66 Query 66 LGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPIAG 120 P++ A GL AFLRTYRVWRA GTWWGW GAGWFL++LM+L L + PI+G Sbjct 67 AASPVVFAAGGLRAFLRTYRVWRARGTWWGWQGAGWFLMSLMLLVLIMSAVPISG 121 >gi|118468813|ref|YP_886139.1| hypothetical protein MSMEG_1767 [Mycobacterium smegmatis str. MC2 155] gi|118170100|gb|ABK70996.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=129 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/123 (44%), Positives = 64/123 (53%), Gaps = 8/123 (6%) Query 6 GPSRGDRL--GRDDSEVHSAIRFAVVAAVVGVG----FLIMGALLVSTCSG--VDTAACG 57 PSR R G D H ++R AV A G F++M L +STC G D ACG Sbjct 3 SPSRSLRSLDGATDRSPHESVREAVKYAAGAAGIAGVFMVMSTLWLSTCVGDTADAVACG 62 Query 58 PPQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPP 117 PQR LLAL P IL AAG+WA R + + W GAG LLTLMV+ L I +P Sbjct 63 VPQRTLLALAAPGILLAAGMWALARPLQTETSREHTRAWQGAGLVLLTLMVVALAISLPD 122 Query 118 IAG 120 + G Sbjct 123 LPG 125 >gi|126433905|ref|YP_001069596.1| hypothetical protein Mjls_1303 [Mycobacterium sp. JLS] gi|126233705|gb|ABN97105.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=116 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/96 (44%), Positives = 56/96 (59%), Gaps = 2/96 (2%) Query 15 RDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSG--VDTAACGPPQRILLALGGPLIL 72 R+ + S R + A++G FL + A+ VSTC G D ACG PQR LLALG P+IL Sbjct 9 REVEGLRSVARSTITVALLGGAFLAVAAVWVSTCGGSVADALACGAPQRALLALGAPVIL 68 Query 73 CAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMV 108 + +F+R + R TWW W +G FL+TLMV Sbjct 69 LGGAVRSFVRAVQHRRRTETWWAWQASGLFLITLMV 104 >gi|108798245|ref|YP_638442.1| hypothetical protein Mmcs_1274 [Mycobacterium sp. MCS] gi|119867341|ref|YP_937293.1| hypothetical protein Mkms_1291 [Mycobacterium sp. KMS] gi|108768664|gb|ABG07386.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119693430|gb|ABL90503.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=116 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/96 (44%), Positives = 56/96 (59%), Gaps = 2/96 (2%) Query 15 RDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSG--VDTAACGPPQRILLALGGPLIL 72 R+ + S R + A++G FL + A+ VSTC G D ACG PQR LLALG P+IL Sbjct 9 REVDGLRSVARSTITVALLGGAFLAVAAVWVSTCGGSVADALACGAPQRALLALGAPVIL 68 Query 73 CAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMV 108 + +F+R + R TWW W +G FL+TLMV Sbjct 69 LGGAVRSFVRAVQHRRRTETWWAWQASGLFLITLMV 104 >gi|120402660|ref|YP_952489.1| hypothetical protein Mvan_1654 [Mycobacterium vanbaalenii PYR-1] gi|119955478|gb|ABM12483.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=124 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/122 (38%), Positives = 66/122 (55%), Gaps = 5/122 (4%) Query 1 MHEVGGPSRGDRLGRDDSE--VHSAIRFAVVAAVVGVGFLIMGALLVSTCSG--VDTAAC 56 M ++ SR R G D SE V A+R + A G FL + + + TC+G A C Sbjct 1 MTDLSHHSRELRRGADYSEPGVRDALRTGLGFAAAGATFLFVAMVWIGTCTGSLAQAAGC 60 Query 57 GPPQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVP 116 G QR +LALG P IL G+W+ + ++R R + W W AGW LL LMVL++ + +P Sbjct 61 GASQRAMLALGAPAILLVGGVWSIVCSFRR-REQSARWAWQAAGWTLLALMVLSVVLSLP 119 Query 117 PI 118 + Sbjct 120 SL 121 >gi|145225372|ref|YP_001136050.1| hypothetical protein Mflv_4794 [Mycobacterium gilvum PYR-GCK] gi|315445720|ref|YP_004078599.1| hypothetical protein Mspyr1_42040 [Mycobacterium sp. Spyr1] gi|145217858|gb|ABP47262.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315264023|gb|ADU00765.1| hypothetical protein Mspyr1_42040 [Mycobacterium sp. Spyr1] Length=123 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/119 (37%), Positives = 57/119 (48%), Gaps = 7/119 (5%) Query 8 SRGDRLGRD----DSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSGVDTAA--CGPPQR 61 SR L R D V AIR V +V + FL + + TC+G A C P Q+ Sbjct 5 SRNTELRRSTGVGDPGVRDAIRTGVGISVAALVFLFVADMWNGTCTGSLAQAIGCAPSQQ 64 Query 62 ILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPIAG 120 L LG P IL A G+W+ R +RV RA + W AGW L TL V + +P + G Sbjct 65 AALTLGAPAILLAGGIWSMARGFRV-RAGHSAMAWQVAGWTLFTLAVACAVLSLPSLPG 122 >gi|118470066|ref|YP_885012.1| hypothetical protein MSMEG_0601 [Mycobacterium smegmatis str. MC2 155] gi|118171353|gb|ABK72249.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=102 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/109 (37%), Positives = 57/109 (53%), Gaps = 23/109 (21%) Query 11 DRLGRDDSEVHSAIRFAV-VAAVVGVG--FLIMGALLVSTCSGVDTAACGPPQRILLALG 67 ++ RD + SA+ + + V A+ GV F +M + +L A+ Sbjct 8 EKRWRDPATFRSAVAYVLSVVAIAGVALIFYVMD------------------RTLLPAIL 49 Query 68 GPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVP 116 P I+ G+ AF+RTY+VWRAEGTW WHGAGWFLL L + C+ P Sbjct 50 VPTIMFVGGVGAFIRTYQVWRAEGTWPIWHGAGWFLLALSL--FCLAFP 96 >gi|312138454|ref|YP_004005790.1| integral membrane protein [Rhodococcus equi 103S] gi|325676162|ref|ZP_08155843.1| hypothetical protein HMPREF0724_13626 [Rhodococcus equi ATCC 33707] gi|311887793|emb|CBH47105.1| putative integral membrane protein [Rhodococcus equi 103S] gi|325553072|gb|EGD22753.1| hypothetical protein HMPREF0724_13626 [Rhodococcus equi ATCC 33707] Length=118 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/91 (37%), Positives = 48/91 (53%), Gaps = 8/91 (8%) Query 38 LIMGALLVSTCSGVDTAACGPPQ--------RILLALGGPLILCAAGLWAFLRTYRVWRA 89 L + A++V+ G C P + RI++ + +L G+ AF++ YRVWR Sbjct 28 LALIAMVVTIVVGSGAGDCAPDEGRLCTDTARIVVVVVPSALLLLGGIGAFVQAYRVWRR 87 Query 90 EGTWWGWHGAGWFLLTLMVLTLCIGVPPIAG 120 GTW W AGWFL LM++ L I V +AG Sbjct 88 AGTWPIWQAAGWFLFVLMLVYLGIAVRSVAG 118 >gi|111022439|ref|YP_705411.1| hypothetical protein RHA1_ro05473 [Rhodococcus jostii RHA1] gi|110821969|gb|ABG97253.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=133 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/54 (45%), Positives = 33/54 (62%), Gaps = 0/54 (0%) Query 56 CGPPQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVL 109 C ++ +L G P +L G+ AF++TYRVWRA G W W GAGW L M++ Sbjct 68 CAGGEKYVLVFGPPALLLLGGVGAFVQTYRVWRAGGRWPIWQGAGWMLFVFMLI 121 >gi|343924779|ref|ZP_08764318.1| hypothetical protein GOALK_026_00500 [Gordonia alkanivorans NBRC 16433] gi|343765286|dbj|GAA11244.1| hypothetical protein GOALK_026_00500 [Gordonia alkanivorans NBRC 16433] Length=110 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/126 (39%), Positives = 61/126 (49%), Gaps = 22/126 (17%) Query 1 MHEVGGPSRGDRLGRDDSEVH----SAIRFAV--VAAVVGVGFLIMGALLVSTCSGVDTA 54 M++V P+ DR GR D E + R A VAAVVGVG A+ + VD Sbjct 1 MNDVQNPT--DR-GRQDVEKRWQDTGSYRSAALYVAAVVGVG-----AIACAIFLAVDRT 52 Query 55 ACGPPQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIG 114 I+LA P + GL A + YR +R GTW W GA WFL LM++TL Sbjct 53 ------NIVLASLVPGVFVLGGLGALVIAYRTYRRGGTWPMWQGAAWFLFALMLVTLSF- 105 Query 115 VPPIAG 120 P +AG Sbjct 106 -PAMAG 110 >gi|262201441|ref|YP_003272649.1| hypothetical protein Gbro_1478 [Gordonia bronchialis DSM 43247] gi|262084788|gb|ACY20756.1| hypothetical protein Gbro_1478 [Gordonia bronchialis DSM 43247] Length=96 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/103 (31%), Positives = 45/103 (44%), Gaps = 8/103 (7%) Query 18 SEVHSAIRFAVVAAVVGVGFLIMGALLVSTCSGVDTAACGPPQRILLALGGPLILCAAGL 77 +E + +R +V +V VGF + A + + S P +L + P++ L Sbjct 2 NESNDDLRAVIVHVIVTVGFALGLAAVGAASS--------TPLSTVLFVASPIVALLGAL 53 Query 78 WAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPIAG 120 RTYRVWR G W W G WFLL V+ L P + Sbjct 54 AMLWRTYRVWRRAGRWQLWQGGSWFLLAFFVVMLFGSAPALVN 96 >gi|108797342|ref|YP_637539.1| hypothetical protein Mmcs_0362 [Mycobacterium sp. MCS] gi|119866427|ref|YP_936379.1| hypothetical protein Mkms_0372 [Mycobacterium sp. KMS] gi|126432964|ref|YP_001068655.1| hypothetical protein Mjls_0351 [Mycobacterium sp. JLS] gi|108767761|gb|ABG06483.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692516|gb|ABL89589.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126232764|gb|ABN96164.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=102 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (72%), Gaps = 0/42 (0%) Query 60 QRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGW 101 ++ A+ P++L A G+ AF++TYRVW+ GTW WHGAGW Sbjct 42 HSLIAAILVPVVLFAGGVGAFIQTYRVWKFRGTWPIWHGAGW 83 >gi|343925236|ref|ZP_08764763.1| hypothetical protein GOALK_038_00410 [Gordonia alkanivorans NBRC 16433] gi|343764833|dbj|GAA11689.1| hypothetical protein GOALK_038_00410 [Gordonia alkanivorans NBRC 16433] Length=104 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/63 (32%), Positives = 32/63 (51%), Gaps = 1/63 (1%) Query 54 AACGPPQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCI 113 AA Q +L+ + P+++ + +R YRVW++ G W W G WFLL ++ L Sbjct 35 AASESVQNVLV-IASPVVVMIGAIAMLVRAYRVWKSGGRWQMWQGGAWFLLVFFIVMLFN 93 Query 114 GVP 116 P Sbjct 94 SAP 96 >gi|326383782|ref|ZP_08205467.1| hypothetical protein SCNU_12632 [Gordonia neofelifaecis NRRL B-59395] gi|326197546|gb|EGD54735.1| hypothetical protein SCNU_12632 [Gordonia neofelifaecis NRRL B-59395] Length=99 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/56 (38%), Positives = 32/56 (58%), Gaps = 0/56 (0%) Query 63 LLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVLTLCIGVPPI 118 +L L P+++ + A +RTYR W++ G W W GA WFLL L +L +P + Sbjct 41 ILVLAAPIVVILGTVAAMVRTYRNWKSGGRWQVWQGATWFLLALSLLWFTGALPSV 96 >gi|120401427|ref|YP_951256.1| hypothetical protein Mvan_0402 [Mycobacterium vanbaalenii PYR-1] gi|119954245|gb|ABM11250.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=106 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/48 (46%), Positives = 26/48 (55%), Gaps = 0/48 (0%) Query 55 ACGPPQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWF 102 A G + A P+ L A G+ A LRTYR W+ G W W GAGWF Sbjct 40 AFGDRSSVFSAALVPVFLFAGGVGALLRTYRQWKGGGGWTAWQGAGWF 87 >gi|333921086|ref|YP_004494667.1| hypothetical protein AS9A_3426 [Amycolicicoccus subflavus DQS3-9A1] gi|333483307|gb|AEF41867.1| hypothetical protein AS9A_3426 [Amycolicicoccus subflavus DQS3-9A1] Length=101 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/83 (40%), Positives = 42/83 (51%), Gaps = 5/83 (6%) Query 28 VVAAVVGVGFLIMGALLVST-CSGVDTAACGPPQRILLALGGPLILCAAGLWAFLRTYRV 86 VVAA +GV LI GA V C D CG R ++++G P I+ A + T R Sbjct 13 VVAAALGV--LIYGATTVPDGCEIAD--PCGDTSRRIVSIGPPAIMLLGAFGAVIGTLRT 68 Query 87 WRAEGTWWGWHGAGWFLLTLMVL 109 W A W W GA WF L LM++ Sbjct 69 WSAGADWRRWFGAFWFCLVLMLV 91 >gi|145220944|ref|YP_001131622.1| hypothetical protein Mflv_0340 [Mycobacterium gilvum PYR-GCK] gi|315442086|ref|YP_004074965.1| hypothetical protein Mspyr1_04180 [Mycobacterium sp. Spyr1] gi|145213430|gb|ABP42834.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315260389|gb|ADT97130.1| hypothetical protein Mspyr1_04180 [Mycobacterium sp. Spyr1] Length=106 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/46 (46%), Positives = 25/46 (55%), Gaps = 0/46 (0%) Query 57 GPPQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWF 102 GP + A P L A G+ A +RTYR W+A W W GAGWF Sbjct 42 GPRDSVFSAALVPAFLFAGGVGALIRTYREWKAGSGWTAWQGAGWF 87 >gi|169629607|ref|YP_001703256.1| hypothetical protein MAB_2521c [Mycobacterium abscessus ATCC 19977] gi|169241574|emb|CAM62602.1| Hypothetical protein MAB_2521c [Mycobacterium abscessus] Length=121 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 35/98 (36%), Positives = 48/98 (49%), Gaps = 3/98 (3%) Query 8 SRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTCS---GVDTAACGPPQRILL 64 S +R RD A+RF+ + V + + + CS VD CG + Sbjct 7 SDAERKDRDKRTHIHAVRFSAATVALAVVTFVTAIVWMGQCSVSVEVDKTLCGRHGTPAM 66 Query 65 ALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWF 102 A+ P +L G+ AF++TYRVWR G WW W GAGWF Sbjct 67 AMAAPGVLMIGGIIAFVQTYRVWRRRGRWWVWQGAGWF 104 >gi|111025182|ref|YP_707602.1| hypothetical protein RHA1_ro08400 [Rhodococcus jostii RHA1] gi|110824161|gb|ABG99444.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=114 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/54 (43%), Positives = 28/54 (52%), Gaps = 0/54 (0%) Query 56 CGPPQRILLALGGPLILCAAGLWAFLRTYRVWRAEGTWWGWHGAGWFLLTLMVL 109 C P R++LA IL GL AF+ YRVWR GAGW +L L+ L Sbjct 52 CSGPARMVLAFVATAILLLGGLGAFVVAYRVWRRVAAGQSGRGAGWVVLVLIYL 105 >gi|344248527|gb|EGW04631.1| Protein shisa-2-like [Cricetulus griseus] Length=220 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/45 (43%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query 4 VGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTC 48 VG P R DR G D S V + F +V +V V F+I+G+L+ + C Sbjct 21 VGEPGRTDREGPDSSAVPIYVPFLIVGSVF-VAFIILGSLVAACC 64 >gi|26352552|dbj|BAC39906.1| unnamed protein product [Mus musculus] Length=295 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/45 (43%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query 4 VGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTC 48 VG P R DR G D S V + F +V +V V F+I+G+L+ + C Sbjct 96 VGEPGRTDREGPDSSAVPIYVPFLIVGSVF-VAFIILGSLVAACC 139 >gi|21703918|ref|NP_663438.1| protein shisa-2 homolog precursor [Mus musculus] gi|55583955|sp|Q8QZV2.1|SHSA2_MOUSE RecName: Full=Protein shisa-2 homolog; AltName: Full=Shisa-like protein 2; Short=mShisa; AltName: Full=Transmembrane protein 46; Flags: Precursor gi|18848277|gb|AAH24118.1| Shisa homolog 2 (Xenopus laevis) [Mus musculus] gi|26330292|dbj|BAC28876.1| unnamed protein product [Mus musculus] gi|34785865|gb|AAH57640.1| Shisa homolog 2 (Xenopus laevis) [Mus musculus] gi|85062538|gb|ABC69144.1| SHISA [Mus musculus] gi|146197437|dbj|BAF57482.1| Shisa [Mus musculus] gi|148704177|gb|EDL36124.1| transmembrane protein 46 [Mus musculus] Length=295 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/45 (43%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query 4 VGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTC 48 VG P R DR G D S V + F +V +V V F+I+G+L+ + C Sbjct 96 VGEPGRTDREGPDSSAVPIYVPFLIVGSVF-VAFIILGSLVAACC 139 >gi|300794277|ref|NP_001178865.1| protein shisa-2 homolog [Rattus norvegicus] gi|109502532|ref|XP_001062885.1| PREDICTED: shisa homolog 2-like [Rattus norvegicus] Length=295 Score = 34.7 bits (78), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/45 (43%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query 4 VGGPSRGDRLGRDDSEVHSAIRFAVVAAVVGVGFLIMGALLVSTC 48 VG P R DR G D S V + F +V +V V F+I+G+L+ + C Sbjct 96 VGEPGRTDREGPDSSAVPIYVPFLIVGSVF-VAFIILGSLVAACC 139 Lambda K H 0.327 0.144 0.499 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130354689300 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40