BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3296 Length=1513 Score E Sequences producing significant alignments: (Bits) Value gi|15610432|ref|NP_217813.1| ATP-dependent helicase [Mycobacteri... 2964 0.0 gi|289444878|ref|ZP_06434622.1| ATP-dependent helicase lhr [Myco... 2962 0.0 gi|294993763|ref|ZP_06799454.1| ATP-dependent helicase lhr [Myco... 2962 0.0 gi|340628278|ref|YP_004746730.1| putative ATP-dependent helicase... 2962 0.0 gi|31794476|ref|NP_856969.1| ATP-dependent helicase [Mycobacteri... 2961 0.0 gi|224991678|ref|YP_002646367.1| putative ATP-dependent helicase... 2961 0.0 gi|289747114|ref|ZP_06506492.1| ATP-dependent helicase Lhr [Myco... 2960 0.0 gi|167968928|ref|ZP_02551205.1| ATP-dependent helicase lhr [Myco... 2958 0.0 gi|289571523|ref|ZP_06451750.1| ATP-dependent helicase lhr [Myco... 2681 0.0 gi|296168907|ref|ZP_06850576.1| DEAD/DEAH box helicase [Mycobact... 2442 0.0 gi|342861510|ref|ZP_08718157.1| DEAD/DEAH box helicase [Mycobact... 2439 0.0 gi|183981260|ref|YP_001849551.1| ATP-dependent helicase Lhr [Myc... 2438 0.0 gi|118462983|ref|YP_883408.1| DEAD/DEAH box helicase [Mycobacter... 2424 0.0 gi|41409513|ref|NP_962349.1| hypothetical protein MAP3415 [Mycob... 2422 0.0 gi|240171592|ref|ZP_04750251.1| ATP-dependent helicase Lhr [Myco... 2328 0.0 gi|126433895|ref|YP_001069586.1| DEAD/DEAH box helicase domain-c... 2287 0.0 gi|108798238|ref|YP_638435.1| DEAD/H associated [Mycobacterium s... 2276 0.0 gi|118468040|ref|YP_886129.1| DEAD/DEAH box helicase [Mycobacter... 2271 0.0 gi|254776702|ref|ZP_05218218.1| DEAD/DEAH box helicase [Mycobact... 2243 0.0 gi|120402638|ref|YP_952467.1| DEAD/DEAH box helicase domain-cont... 2226 0.0 gi|315445736|ref|YP_004078615.1| ATP dependent helicase, Lhr fam... 2205 0.0 gi|145225388|ref|YP_001136066.1| DEAD/DEAH box helicase domain-c... 2185 0.0 gi|333991755|ref|YP_004524369.1| ATP-dependent helicase Lhr [Myc... 2176 0.0 gi|254819535|ref|ZP_05224536.1| DEAD/DEAH box helicase [Mycobact... 2090 0.0 gi|289759439|ref|ZP_06518817.1| predicted protein [Mycobacterium... 2046 0.0 gi|169630730|ref|YP_001704379.1| ATP-dependent helicase Lhr [Myc... 2000 0.0 gi|336459620|gb|EGO38555.1| Lhr-like helicase [Mycobacterium avi... 1894 0.0 gi|312140745|ref|YP_004008081.1| dead/deah box helicase [Rhodoco... 1837 0.0 gi|325675615|ref|ZP_08155299.1| ATP-dependent helicase [Rhodococ... 1835 0.0 gi|111023234|ref|YP_706206.1| ATP-dependent helicase [Rhodococcu... 1825 0.0 gi|229489397|ref|ZP_04383260.1| dead/H associated family protein... 1814 0.0 gi|226305586|ref|YP_002765546.1| ATP-dependent helicase [Rhodoco... 1813 0.0 gi|226365741|ref|YP_002783524.1| ATP-dependent helicase [Rhodoco... 1810 0.0 gi|296394818|ref|YP_003659702.1| DEAD/H associated domain-contai... 1793 0.0 gi|148273832|ref|YP_001223393.1| putative ATP-dependent helicase... 1701 0.0 gi|262201745|ref|YP_003272953.1| DEAD/DEAH box helicase [Gordoni... 1695 0.0 gi|325962095|ref|YP_004240001.1| ATP dependent helicase, Lhr fam... 1686 0.0 gi|170780852|ref|YP_001709184.1| putative ATP-dependent DNA heli... 1686 0.0 gi|119963676|ref|YP_946581.1| ATP dependent DNA helicase [Arthro... 1673 0.0 gi|343926676|ref|ZP_08766174.1| putative ATP-dependent helicase ... 1673 0.0 gi|88854732|ref|ZP_01129398.1| Lhr-like helicase [marine actinob... 1666 0.0 gi|333921178|ref|YP_004494759.1| putative ATP-dependent helicase... 1665 0.0 gi|116669189|ref|YP_830122.1| DEAD/DEAH box helicase domain-cont... 1662 0.0 gi|119716556|ref|YP_923521.1| DEAD/DEAH box helicase domain-cont... 1658 0.0 gi|296138743|ref|YP_003645986.1| DEAD/DEAH box helicase [Tsukamu... 1621 0.0 gi|323357449|ref|YP_004223845.1| Lhr-like helicase [Microbacteri... 1617 0.0 gi|297156755|gb|ADI06467.1| putative ATP-dependent DNA helicase ... 1616 0.0 gi|345009751|ref|YP_004812105.1| DEAD/H associated domain-contai... 1610 0.0 gi|239991206|ref|ZP_04711870.1| putative ATP-dependent DNA helic... 1596 0.0 gi|86742209|ref|YP_482609.1| DEAD/DEAH box helicase-like protein... 1593 0.0 >gi|15610432|ref|NP_217813.1| ATP-dependent helicase [Mycobacterium tuberculosis H37Rv] gi|15842887|ref|NP_337924.1| ATP-dependent helicase, putative [Mycobacterium tuberculosis CDC1551] gi|148663159|ref|YP_001284682.1| ATP-dependent helicase Lhr [Mycobacterium tuberculosis H37Ra] 38 more sequence titles Length=1513 Score = 2964 bits (7685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1512/1513 (99%), Positives = 1513/1513 (100%), Gaps = 0/1513 (0%) Query 1 VRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 +RFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL Sbjct 1 MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR Sbjct 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT Sbjct 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL Sbjct 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 Query 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC Sbjct 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 Query 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA Sbjct 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS Sbjct 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY Sbjct 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP Sbjct 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV Sbjct 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG Sbjct 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA Sbjct 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP Sbjct 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK Sbjct 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF Sbjct 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS Sbjct 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 Query 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP Sbjct 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 Query 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA Sbjct 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 Query 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA Sbjct 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 Query 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV Sbjct 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 Query 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG Sbjct 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 Query 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER Sbjct 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 Query 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA Sbjct 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 Query 1501 AGFVRTPRGLRRR 1513 AGFVRTPRGLRRR Sbjct 1501 AGFVRTPRGLRRR 1513 >gi|289444878|ref|ZP_06434622.1| ATP-dependent helicase lhr [Mycobacterium tuberculosis T46] gi|289576016|ref|ZP_06456243.1| ATP-dependent helicase lhr [Mycobacterium tuberculosis K85] gi|339633304|ref|YP_004724946.1| ATP-dependent helicase LHR (large helicase-related protein) [Mycobacterium africanum GM041182] gi|289417797|gb|EFD15037.1| ATP-dependent helicase lhr [Mycobacterium tuberculosis T46] gi|289540447|gb|EFD45025.1| ATP-dependent helicase lhr [Mycobacterium tuberculosis K85] gi|339332660|emb|CCC28377.1| putative ATP-dependent helicase LHR (large helicase-related protein) [Mycobacterium africanum GM041182] Length=1513 Score = 2962 bits (7680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1511/1513 (99%), Positives = 1513/1513 (100%), Gaps = 0/1513 (0%) Query 1 VRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 +RFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL Sbjct 1 MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR Sbjct 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT Sbjct 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL Sbjct 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 Query 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC Sbjct 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 Query 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA Sbjct 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS Sbjct 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY Sbjct 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP Sbjct 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV Sbjct 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG Sbjct 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA Sbjct 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP Sbjct 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK Sbjct 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF Sbjct 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAA+GSAGGEQWCDAEVLRILRRRS Sbjct 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAEGSAGGEQWCDAEVLRILRRRS 1080 Query 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP Sbjct 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 Query 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA Sbjct 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 Query 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA Sbjct 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 Query 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV Sbjct 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 Query 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG Sbjct 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 Query 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER Sbjct 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 Query 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA Sbjct 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 Query 1501 AGFVRTPRGLRRR 1513 AGFVRTPRGLRRR Sbjct 1501 AGFVRTPRGLRRR 1513 >gi|294993763|ref|ZP_06799454.1| ATP-dependent helicase lhr [Mycobacterium tuberculosis 210] gi|298526772|ref|ZP_07014181.1| lhr [Mycobacterium tuberculosis 94_M4241A] gi|298496566|gb|EFI31860.1| lhr [Mycobacterium tuberculosis 94_M4241A] gi|326902476|gb|EGE49409.1| ATP-dependent helicase lhr [Mycobacterium tuberculosis W-148] gi|339299732|gb|AEJ51842.1| ATP-dependent helicase lhr [Mycobacterium tuberculosis CCDC5180] Length=1513 Score = 2962 bits (7679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1511/1513 (99%), Positives = 1512/1513 (99%), Gaps = 0/1513 (0%) Query 1 VRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 +RFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL Sbjct 1 MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR Sbjct 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT Sbjct 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL Sbjct 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 Query 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC Sbjct 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 Query 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA Sbjct 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS Sbjct 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 LFEATLDLLSG YPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY Sbjct 481 LFEATLDLLSGTYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP Sbjct 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV Sbjct 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG Sbjct 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA Sbjct 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP Sbjct 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK Sbjct 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF Sbjct 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS Sbjct 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 Query 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP Sbjct 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 Query 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA Sbjct 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 Query 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA Sbjct 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 Query 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV Sbjct 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 Query 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG Sbjct 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 Query 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER Sbjct 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 Query 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA Sbjct 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 Query 1501 AGFVRTPRGLRRR 1513 AGFVRTPRGLRRR Sbjct 1501 AGFVRTPRGLRRR 1513 >gi|340628278|ref|YP_004746730.1| putative ATP-dependent helicase DING [Mycobacterium canettii CIPT 140010059] gi|340006468|emb|CCC45650.1| putative ATP-dependent helicase LHR (large helicase-related protein) [Mycobacterium canettii CIPT 140010059] Length=1513 Score = 2962 bits (7678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1509/1513 (99%), Positives = 1513/1513 (100%), Gaps = 0/1513 (0%) Query 1 VRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 +RFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL Sbjct 1 MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR Sbjct 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVI+DEIHAIAAT Sbjct 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVILDEIHAIAAT 180 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL Sbjct 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 Query 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC Sbjct 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 Query 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA Sbjct 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS Sbjct 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY Sbjct 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP Sbjct 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV Sbjct 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG Sbjct 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA Sbjct 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP Sbjct 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK Sbjct 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RALV+SFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF Sbjct 961 RALVLSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAA+GSAGGEQWCDAEVLRILRRRS Sbjct 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAEGSAGGEQWCDAEVLRILRRRS 1080 Query 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP Sbjct 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 Query 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA Sbjct 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 Query 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA Sbjct 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 Query 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV Sbjct 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 Query 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG Sbjct 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 Query 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER Sbjct 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 Query 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA Sbjct 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 Query 1501 AGFVRTPRGLRRR 1513 AGFVRTPRGLRRR Sbjct 1501 AGFVRTPRGLRRR 1513 >gi|31794476|ref|NP_856969.1| ATP-dependent helicase [Mycobacterium bovis AF2122/97] gi|121639185|ref|YP_979409.1| putative ATP-dependent helicase lhr [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121639219|ref|YP_979443.1| putative atp-dependent helicase lhr [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|31620072|emb|CAD95416.1| PROBABLE ATP-DEPENDENT HELICASE LHR (LARGE HELICASE-RELATED PROTEIN) [Mycobacterium bovis AF2122/97] gi|121494833|emb|CAL73314.1| Probable ATP-dependent helicase lhr [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121494867|emb|CAL73350.1| Probable atp-dependent helicase lhr [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|341603224|emb|CCC65902.1| probable ATP-dependent helicase lhr [Mycobacterium bovis BCG str. Moreau RDJ] Length=1513 Score = 2961 bits (7677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1509/1513 (99%), Positives = 1513/1513 (100%), Gaps = 0/1513 (0%) Query 1 VRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 +RFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL Sbjct 1 MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR Sbjct 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT Sbjct 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL Sbjct 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 Query 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC Sbjct 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 Query 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA Sbjct 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS Sbjct 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY Sbjct 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP Sbjct 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGI+V Sbjct 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIMV 720 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG Sbjct 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQ+VYDVPILVELMARIAQRRVRVA Sbjct 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQNVYDVPILVELMARIAQRRVRVA 840 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP Sbjct 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK Sbjct 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF Sbjct 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAA+GSAGGEQWCDAEVLRILRRRS Sbjct 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAEGSAGGEQWCDAEVLRILRRRS 1080 Query 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP Sbjct 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 Query 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA Sbjct 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 Query 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA Sbjct 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 Query 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV Sbjct 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 Query 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG Sbjct 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 Query 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER Sbjct 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 Query 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA Sbjct 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 Query 1501 AGFVRTPRGLRRR 1513 AGFVRTPRGLRRR Sbjct 1501 AGFVRTPRGLRRR 1513 >gi|224991678|ref|YP_002646367.1| putative ATP-dependent helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|224774793|dbj|BAH27599.1| putative ATP-dependent helicase [Mycobacterium bovis BCG str. Tokyo 172] Length=1513 Score = 2961 bits (7675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1508/1513 (99%), Positives = 1513/1513 (100%), Gaps = 0/1513 (0%) Query 1 VRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 +RFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL Sbjct 1 MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR Sbjct 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT Sbjct 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL Sbjct 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 Query 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC Sbjct 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 Query 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA Sbjct 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS Sbjct 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY Sbjct 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP Sbjct 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGI+V Sbjct 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIMV 720 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG Sbjct 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLWQQRQRAARL+EVARKYPDFPIVLETVRECLQ+VYDVPILVELMARIAQRRVRVA Sbjct 781 RRSPLWQQRQRAARLMEVARKYPDFPIVLETVRECLQNVYDVPILVELMARIAQRRVRVA 840 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP Sbjct 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK Sbjct 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF Sbjct 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAA+GSAGGEQWCDAEVLRILRRRS Sbjct 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAEGSAGGEQWCDAEVLRILRRRS 1080 Query 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP Sbjct 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 Query 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA Sbjct 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 Query 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA Sbjct 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 Query 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV Sbjct 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 Query 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG Sbjct 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 Query 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER Sbjct 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 Query 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA Sbjct 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 Query 1501 AGFVRTPRGLRRR 1513 AGFVRTPRGLRRR Sbjct 1501 AGFVRTPRGLRRR 1513 >gi|289747114|ref|ZP_06506492.1| ATP-dependent helicase Lhr [Mycobacterium tuberculosis 02_1987] gi|289687642|gb|EFD55130.1| ATP-dependent helicase Lhr [Mycobacterium tuberculosis 02_1987] Length=1513 Score = 2960 bits (7673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1509/1513 (99%), Positives = 1510/1513 (99%), Gaps = 0/1513 (0%) Query 1 VRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 +RFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL Sbjct 1 MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR Sbjct 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT Sbjct 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL Sbjct 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 Query 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC Sbjct 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 Query 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA Sbjct 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS Sbjct 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 LFEATLDLLSG YPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY Sbjct 481 LFEATLDLLSGTYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATERPSRVGELDEEMVYESRPGD ISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 541 LATERPSRVGELDEEMVYESRPGDEISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP Sbjct 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV Sbjct 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFAS FRESAARALLLPRRHPG Sbjct 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASLFRESAARALLLPRRHPG 780 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA Sbjct 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP Sbjct 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK Sbjct 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF Sbjct 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS Sbjct 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 Query 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP Sbjct 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 Query 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA Sbjct 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 Query 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA Sbjct 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 Query 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV Sbjct 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 Query 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG Sbjct 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 Query 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER Sbjct 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 Query 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA Sbjct 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 Query 1501 AGFVRTPRGLRRR 1513 AGFVRTPRGLRRR Sbjct 1501 AGFVRTPRGLRRR 1513 >gi|167968928|ref|ZP_02551205.1| ATP-dependent helicase lhr [Mycobacterium tuberculosis H37Ra] Length=1513 Score = 2958 bits (7669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1509/1513 (99%), Positives = 1510/1513 (99%), Gaps = 0/1513 (0%) Query 1 VRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 +RFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL Sbjct 1 MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR Sbjct 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT Sbjct 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL Sbjct 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 Query 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC Sbjct 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 Query 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA Sbjct 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS Sbjct 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY Sbjct 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP Sbjct 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV Sbjct 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG Sbjct 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA Sbjct 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EAETAKPSPFAASL GYVGAFM EGDTPLAERRAAALALDGTLLAELLGRVELRELLDP Sbjct 841 EAETAKPSPFAASLWCGYVGAFMCEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK Sbjct 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF Sbjct 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS Sbjct 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 Query 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP Sbjct 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 Query 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA Sbjct 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 Query 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA Sbjct 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 Query 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV Sbjct 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 Query 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG Sbjct 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 Query 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER Sbjct 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 Query 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA Sbjct 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA 1500 Query 1501 AGFVRTPRGLRRR 1513 AGFVRTPRGLRRR Sbjct 1501 AGFVRTPRGLRRR 1513 >gi|289571523|ref|ZP_06451750.1| ATP-dependent helicase lhr [Mycobacterium tuberculosis T17] gi|289545277|gb|EFD48925.1| ATP-dependent helicase lhr [Mycobacterium tuberculosis T17] Length=1370 Score = 2681 bits (6950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1364/1366 (99%), Positives = 1366/1366 (100%), Gaps = 0/1366 (0%) Query 1 VRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 +RFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL Sbjct 1 MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR Sbjct 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT Sbjct 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL Sbjct 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 Query 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC Sbjct 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 Query 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA Sbjct 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS Sbjct 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY Sbjct 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP Sbjct 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV Sbjct 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG Sbjct 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA Sbjct 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP Sbjct 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK Sbjct 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF Sbjct 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRS 1080 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAA+GSAGGEQWCDAEVLRILRRRS Sbjct 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAEGSAGGEQWCDAEVLRILRRRS 1080 Query 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP Sbjct 1081 LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 Query 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA Sbjct 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 Query 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA Sbjct 1201 ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA 1260 Query 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV Sbjct 1261 APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 Query 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFA 1366 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFA Sbjct 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFA 1366 >gi|296168907|ref|ZP_06850576.1| DEAD/DEAH box helicase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896376|gb|EFG76029.1| DEAD/DEAH box helicase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=1527 Score = 2442 bits (6328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1270/1525 (84%), Positives = 1364/1525 (90%), Gaps = 24/1525 (1%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 LSRFSA TR+WFTSTFA PT AQA AW AIADGD+TLV+APTGSGKTLAAFLWALDSLA Sbjct 7 LSRFSATTREWFTSTFAGPTTAQAQAWDAIADGDDTLVVAPTGSGKTLAAFLWALDSLAR 66 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 S ++RPA TRVLYVSPLKALAVDVERNLRTPLAGLTR+AER GLP P I VGVRSGDT Sbjct 67 S---ADRPAGTRVLYVSPLKALAVDVERNLRTPLAGLTRIAERDGLPPPAISVGVRSGDT 123 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 PP RRQL+++PPDVLITTPESLFLMLTSAAR+TL GVQTVI+DEIHAIAA KRGAHLAL Sbjct 124 PPTERRQLIARPPDVLITTPESLFLMLTSAARETLAGVQTVIVDEIHAIAAGKRGAHLAL 183 Query 189 SLERLDDLSSRRR----AQRIGLSATVRPPEELARFLSGQSP---TTIVAPPAAKTVELS 241 SLERL DL+ R AQRIGLSATVRPPEELARFLSG P T IVAP AAKTVELS Sbjct 184 SLERLQDLAQELRGGPPAQRIGLSATVRPPEELARFLSGAGPARRTRIVAPRAAKTVELS 243 Query 242 VQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCG 301 VQVPVPDMANL +N+IWPDVEARLVDLIE+HNSTIVFANSRRLAERLTARLNEIHA R G Sbjct 244 VQVPVPDMANLANNSIWPDVEARLVDLIEAHNSTIVFANSRRLAERLTARLNEIHAERLG 303 Query 302 IELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAV 361 + +TN +VAGGAPAHIMGSGQT+GA P+LARAHHGS+SKEQRA+VEEDLKRG LKAV Sbjct 304 VGPRDETNPEVAGGAPAHIMGSGQTYGAEPLLARAHHGSVSKEQRALVEEDLKRGLLKAV 363 Query 362 VATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGC 421 VATSSLELGIDMGAVDLVIQV+APPSVASGLQRIGRAGHQVGE+SRGVLFPKHRTDL+GC Sbjct 364 VATSSLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEVSRGVLFPKHRTDLIGC 423 Query 422 AVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSL 481 AV+VQRML+GEIETMRVPANPLDILAQ TVAAAALEPLDAD WFDTVRR+APFATLPRS+ Sbjct 424 AVTVQRMLSGEIETMRVPANPLDILAQQTVAAAALEPLDADRWFDTVRRSAPFATLPRSV 483 Query 482 FEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYL 541 +EATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRG+F VYL Sbjct 484 YEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGMFTVYL 543 Query 542 ATE--RPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWR 599 A+E +PSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWR Sbjct 544 ASESEKPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWR 603 Query 600 GDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVV 659 GDDAGRPAELGAALGALTGELA L R F RCA LGFD YATDN+W LLD+QR A VV Sbjct 604 GDDAGRPAELGAALGALTGELAGLARENFNARCAALGFDAYATDNMWALLDEQRAAAGVV 663 Query 660 PTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIV 719 PTD+TLLVERFRDELGDWRVILHSPYGLRV+GPLALAVGRRLR+RYG+DEKPTASD+GIV Sbjct 664 PTDTTLLVERFRDELGDWRVILHSPYGLRVNGPLALAVGRRLRERYGLDEKPTASDDGIV 723 Query 720 VRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHP 779 VRLPD + ++PPGA+LFVF+ADEIDPIVT EV GSALFASRFRE AARALLLPRRHP Sbjct 724 VRLPDMLYDDGETPPGADLFVFEADEIDPIVTAEVGGSALFASRFRECAARALLLPRRHP 783 Query 780 GRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRV 839 G+RSPLW QRQRAA+LL+VARKYPDFP+VLETVRECLQDVYDVP L LMA IAQR+VRV Sbjct 784 GKRSPLWHQRQRAAQLLDVARKYPDFPVVLETVRECLQDVYDVPALAALMAGIAQRKVRV 843 Query 840 AEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLD 899 AE T +PSPFAASLLFGYVGAFMYEGDTPLAERRAAAL+LD TLLAELLGRVELRELLD Sbjct 844 AEVATDRPSPFAASLLFGYVGAFMYEGDTPLAERRAAALSLDSTLLAELLGRVELRELLD 903 Query 900 PDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAA 959 PDVIAAT RQLQHLA DR ARDAEGVADLLRLLGP+TE EIAAR+G EV GWL+GL AA Sbjct 904 PDVIAATGRQLQHLAEDRAARDAEGVADLLRLLGPMTEGEIAARSGGAEVGGWLEGLHAA 963 Query 960 KRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTP 1019 +RAL VSFAGRSWWVA+ED+GRLRDGVGA VP+G+PA+FTEAVADPLGELLGRYARTHTP Sbjct 964 RRALPVSFAGRSWWVAIEDIGRLRDGVGAPVPLGVPAAFTEAVADPLGELLGRYARTHTP 1023 Query 1020 FTTAAAAARFGLGLRVTADVLGRLA----SDGRLVRGEFVAAAK--GSAGGEQWCDAEVL 1073 FTTA AAARFGLGLRVTADVLGRLA S GRLVRG+FVAA + G+AG EQWCDA+VL Sbjct 1024 FTTAEAAARFGLGLRVTADVLGRLADPTSSQGRLVRGDFVAATEVPGAAGSEQWCDADVL 1083 Query 1074 RILRRRSLAALRAQAEPVSTAAYGRFLPAWQHV----SAGNSGIDGLAAVIDQLAGVRIP 1129 R+LRRRSLAALRAQ EPVSTAAYGRFLPAW V S +SG+DGL +V+DQLAGVR+P Sbjct 1084 RVLRRRSLAALRAQVEPVSTAAYGRFLPAWHQVAGSSSPNHSGLDGLMSVVDQLAGVRLP 1143 Query 1130 ASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEP 1189 ASAIEPLVL PR+RDYSPAMLDELLASG+VTW GAG+IS SDGW+ALH +SAP+TLAEP Sbjct 1144 ASAIEPLVLGPRVRDYSPAMLDELLASGEVTWQGAGTISASDGWVALHVGESAPLTLAEP 1203 Query 1190 AEIDFTDAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRA 1249 AEIDFTDAHRAIL +LG GGAYFFRQL G+ +AELK ALWELIWAG VTGDTFAPVRA Sbjct 1204 AEIDFTDAHRAILDTLGGGGAYFFRQLAQSGIPDAELKTALWELIWAGWVTGDTFAPVRA 1263 Query 1250 VLGGAGTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHY 1309 VLGG G R+R+ PAH HRPPRLSRY + HAQ R ADPTVAGRWSALP E DST+RAHY Sbjct 1264 VLGGGGGRRRSVPAHRSHRPPRLSRYSVAHAQTRPADPTVAGRWSALPAAETDSTMRAHY 1323 Query 1310 QAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVAS 1369 QAELLL RHGVLT+ AVA EGV GGFATLYKVLS FE+AGRCQRGYF+ESLGGAQFAVAS Sbjct 1324 QAELLLGRHGVLTRGAVATEGVTGGFATLYKVLSTFEEAGRCQRGYFVESLGGAQFAVAS 1383 Query 1370 TVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVL 1429 TVDRLRSY DG+DPE+PDY AVVLAAADPANPYGAALPWPASSA+G ARPGRKAGALVVL Sbjct 1384 TVDRLRSYGDGIDPERPDYRAVVLAAADPANPYGAALPWPASSAEG-ARPGRKAGALVVL 1442 Query 1430 VDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQP-G 1488 VDG LAWFLERGGRSLLTFTDDP A+ AAA LADLV + RVASILVER DG+P LQP Sbjct 1443 VDGHLAWFLERGGRSLLTFTDDPAAHGAAAAALADLVGSRRVASILVERIDGVPALQPRP 1502 Query 1489 GRASAALTALLAAGFVRTPRGLRRR 1513 G + AL AGF RTPRGLR R Sbjct 1503 GGPNPVAEALAEAGFARTPRGLRLR 1527 >gi|342861510|ref|ZP_08718157.1| DEAD/DEAH box helicase [Mycobacterium colombiense CECT 3035] gi|342130999|gb|EGT84288.1| DEAD/DEAH box helicase [Mycobacterium colombiense CECT 3035] Length=1524 Score = 2439 bits (6322), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1265/1527 (83%), Positives = 1362/1527 (90%), Gaps = 25/1527 (1%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 + RFSA+TR+WFTSTF APT AQA AW AIADG NTLVIAPTGSGKTLAAFLWALDSLAG Sbjct 1 MGRFSAITREWFTSTFDAPTTAQAEAWNAIADGHNTLVIAPTGSGKTLAAFLWALDSLAG 60 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 S +ERP+ TRVLYVSPLKALAVDVERNLRTPLAGLTR+AER+GLPAP I VGVRSGDT Sbjct 61 S---AERPSGTRVLYVSPLKALAVDVERNLRTPLAGLTRIAERRGLPAPDISVGVRSGDT 117 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 PPA RRQL+S+PPDVLITTPESLFLMLTSAAR+TL GVQTVI+DEIHAIAA KRGAHLAL Sbjct 118 PPAARRQLISRPPDVLITTPESLFLMLTSAARETLAGVQTVIVDEIHAIAAGKRGAHLAL 177 Query 189 SLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVPD 248 SLERLD L + AQRIGLSATVRPPEELARFLSGQ+PTTIVAPP+AKTVEL+V VPVPD Sbjct 178 SLERLDALREDKPAQRIGLSATVRPPEELARFLSGQAPTTIVAPPSAKTVELTVAVPVPD 237 Query 249 MANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELAPDT 308 MANL +NTIWPDVE RLVDLIESH+STIVFANSRRLAERLTARLNEIHA R G+EL+ D Sbjct 238 MANLANNTIWPDVENRLVDLIESHSSTIVFANSRRLAERLTARLNEIHAERSGVELSADA 297 Query 309 NQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLE 368 N +VAGGAPAHIMGSGQT+GA P+LARAHHGS+SKEQRA+VEEDLKRG LKAVVATSSLE Sbjct 298 NPKVAGGAPAHIMGSGQTYGAAPILARAHHGSVSKEQRALVEEDLKRGLLKAVVATSSLE 357 Query 369 LGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRM 428 LGIDMGAVDLVIQV+APPSVASGLQRIGRAGHQVGE+S+GVLFPKHRTDL+GCAVSVQRM Sbjct 358 LGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEVSQGVLFPKHRTDLIGCAVSVQRM 417 Query 429 LAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDL 488 L G+IETMRVPANPLDILAQ TVAAAALEPLDAD WFDTVRRAAPFATLPRS++EATLDL Sbjct 418 LTGQIETMRVPANPLDILAQQTVAAAALEPLDADRWFDTVRRAAPFATLPRSVYEATLDL 477 Query 489 LSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLAT--ERP 546 LSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLF VYLA+ E+P Sbjct 478 LSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFTVYLASEAEKP 537 Query 547 SRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDAGRP 606 SRVGEL+EEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGD GRP Sbjct 538 SRVGELEEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDGLGRP 597 Query 607 AELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDSTLL 666 AELGAALGA TGELA L R AF RCAGLGFD YATDNL RLL++QR A VVPTD+TLL Sbjct 598 AELGAALGAFTGELAGLSREAFEKRCAGLGFDAYATDNLLRLLEEQRGAAGVVPTDTTLL 657 Query 667 VERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPDTV 726 VERFRDELGDWRVILHSPYGL V+GPLALAV RRLR+RYGIDEKPTASD+G+VVRLPDT+ Sbjct 658 VERFRDELGDWRVILHSPYGLAVNGPLALAVARRLRERYGIDEKPTASDDGVVVRLPDTL 717 Query 727 SAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSPLW 786 S DSPPGA+LFVFDA+EIDPIVT EV GSALFASRFRE AARALLLPRRHPGRRSPLW Sbjct 718 SDTGDSPPGADLFVFDAEEIDPIVTAEVGGSALFASRFRECAARALLLPRRHPGRRSPLW 777 Query 787 QQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEAETAK 846 QQRQRAA+LLEVARKYPDFP+VLET+RECLQDVYDVP L +LM IAQRRVRV E ET + Sbjct 778 QQRQRAAQLLEVARKYPDFPVVLETIRECLQDVYDVPALTQLMTGIAQRRVRVLEVETQR 837 Query 847 PSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDVIAAT 906 PSPFAASLLFGYVGAFMYEGD+PLAERRAAAL+LD TLLAELLGRVELR+LLDP++IAAT Sbjct 838 PSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDSTLLAELLGRVELRDLLDPEIIAAT 897 Query 907 SRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAAR---AGAPEVSGWLDGLRAAKRAL 963 RQLQHLA DR ARDAEGVADLLRLLGPLTE+E+AAR A V+GWL+GLRAA+RAL Sbjct 898 GRQLQHLAPDRAARDAEGVADLLRLLGPLTEEEVAARTDVADGKNVAGWLEGLRAARRAL 957 Query 964 VVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTA 1023 VSFAGRSWWVA+ED+GRLRDG+G AVP+G+PA+FTE VADPLGELLGRYARTHTPFTT Sbjct 958 TVSFAGRSWWVAIEDIGRLRDGIGIAVPLGVPAAFTEEVADPLGELLGRYARTHTPFTTG 1017 Query 1024 AAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGS----AGGEQWCDAEVLRILRRR 1079 AAARFGLGLRVTAD+LGRLA DGRLVRG+FVAAA+ AGGEQWCDAEVLRILRRR Sbjct 1018 EAAARFGLGLRVTADILGRLAGDGRLVRGDFVAAAEAPGAPVAGGEQWCDAEVLRILRRR 1077 Query 1080 SLAALRAQAEPVSTAAYGRFLPAWQHVSAGN-------SGIDGLAAVIDQLAGVRIPASA 1132 SLAALRAQ EPVSTAAYGRFLPAW V A SG+DGL VIDQLAGV++PASA Sbjct 1078 SLAALRAQVEPVSTAAYGRFLPAWHRVGAAESSRSPSYSGLDGLMTVIDQLAGVKMPASA 1137 Query 1133 IEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEI 1192 IEPLVLAPRIRDYSPA+LDELLA+G+VTWSGAGSIS DGWIALHP++SAP+TL PA+I Sbjct 1138 IEPLVLAPRIRDYSPALLDELLATGEVTWSGAGSISSGDGWIALHPSESAPLTLPGPADI 1197 Query 1193 DFTDAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLG 1252 D DAHRA+L L GGAYFFRQLT GL E+ELKAALW+LIWAG +TGDTFAPVRA++ Sbjct 1198 DLGDAHRAVLDILAPGGAYFFRQLTQGGLPESELKAALWKLIWAGWITGDTFAPVRALIA 1257 Query 1253 GAGTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAE 1312 G+G R+R+APAH HRPPRLSRY + H Q+R ADPTVAGRWS LP PEPDSTLRAHYQAE Sbjct 1258 GSGARRRSAPAHRSHRPPRLSRYSVAHPQSRPADPTVAGRWSILPAPEPDSTLRAHYQAE 1317 Query 1313 LLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVD 1372 LLL RHGVLT+ AV AEGV GGFATLYKVLS FEDAGRCQRGYFIESLGGAQFAVASTVD Sbjct 1318 LLLGRHGVLTRGAVTAEGVPGGFATLYKVLSTFEDAGRCQRGYFIESLGGAQFAVASTVD 1377 Query 1373 RLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPA------SSADGTARPGRKAGAL 1426 RLR+Y DGVDPE+P+Y A+ LAAADPANPYGAALPWPA S ARPGRKAGAL Sbjct 1378 RLRAYSDGVDPERPEYRAIALAAADPANPYGAALPWPAPRGEGSGSGGPGARPGRKAGAL 1437 Query 1427 VVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQ 1486 VVLVDGELAWFLERGGRSLLTFTDDP ANHAAA LADLV + RVASILVER DG+P LQ Sbjct 1438 VVLVDGELAWFLERGGRSLLTFTDDPAANHAAATALADLVASRRVASILVERIDGVPALQ 1497 Query 1487 PGGRASAALTALLAAGFVRTPRGLRRR 1513 P AL AGF RTPRG+R R Sbjct 1498 PRADGPGVAGALSDAGFARTPRGMRLR 1524 >gi|183981260|ref|YP_001849551.1| ATP-dependent helicase Lhr [Mycobacterium marinum M] gi|183174586|gb|ACC39696.1| ATP-dependent helicase Lhr [Mycobacterium marinum M] Length=1539 Score = 2438 bits (6318), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1284/1532 (84%), Positives = 1371/1532 (90%), Gaps = 27/1532 (1%) Query 6 PSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDS 65 P L RFSA+TR+WFT+TFAAPT AQASAWAAIA GDNTLVIAPTGSGKTLAAFLWALDS Sbjct 11 PEPLGRFSAITREWFTNTFAAPTPAQASAWAAIAAGDNTLVIAPTGSGKTLAAFLWALDS 70 Query 66 LAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRS 125 LA +R A TRVLYVSPLKALAVDVERNLRTPLAGLTRLAER+GLP PQI VGVRS Sbjct 71 LARC---PDRTAGTRVLYVSPLKALAVDVERNLRTPLAGLTRLAERRGLPPPQISVGVRS 127 Query 126 GDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAH 185 GDTPPA+RRQL+++PPDVLITTPESLFLMLTSAAR+TL GVQTVI+DEIHAIAATKRGAH Sbjct 128 GDTPPAVRRQLITRPPDVLITTPESLFLMLTSAARETLAGVQTVIVDEIHAIAATKRGAH 187 Query 186 LALSLERLDDLSSRRRA----QRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELS 241 LALSLERLD L+ RRA QRIGLSATVRPPEELARFLSG +PTTIVAP +AKT +L+ Sbjct 188 LALSLERLDQLAPDRRAGPPAQRIGLSATVRPPEELARFLSGSAPTTIVAPHSAKTFDLT 247 Query 242 VQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCG 301 VQVPV DMANL +NTIWPDVE+RLVDLIESHNSTIVFANSRRLAERLTARLNEIHA R G Sbjct 248 VQVPVADMANLANNTIWPDVESRLVDLIESHNSTIVFANSRRLAERLTARLNEIHAERSG 307 Query 302 IELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAV 361 + L + N QVAGGAPA IM SGQTFGA +LARAHHGS+SKEQRA VEEDLKRG LKAV Sbjct 308 MTLPSEANTQVAGGAPAQIMASGQTFGAATLLARAHHGSVSKEQRAQVEEDLKRGALKAV 367 Query 362 VATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGC 421 VATSSLELGIDMGAVDLVIQV+APPSVASGLQRIGRAGHQVGE+SRGVLFPKHRTDLLGC Sbjct 368 VATSSLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEVSRGVLFPKHRTDLLGC 427 Query 422 AVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSL 481 A+SVQRM G+IETMRVPANPLDILAQHTVAAAALEPLDAD WFDTVRR+A FATLPRS+ Sbjct 428 AISVQRMRTGQIETMRVPANPLDILAQHTVAAAALEPLDADQWFDTVRRSASFATLPRSV 487 Query 482 FEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYL 541 FEATLDLLSGKYPSTEFAELRPRLVYDR TGTLTARPGAQRLAVTSGGAIPDRGLF VYL Sbjct 488 FEATLDLLSGKYPSTEFAELRPRLVYDRGTGTLTARPGAQRLAVTSGGAIPDRGLFTVYL 547 Query 542 AT--ERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWR 599 A+ E+PSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPG+PARLPFWR Sbjct 548 ASEAEKPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGEPARLPFWR 607 Query 600 GDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVV 659 GDD GRPAELGAALGALTGELA LDR F RCAGLGFDD+ATDNLW LLDDQ+TAT VV Sbjct 608 GDDVGRPAELGAALGALTGELARLDRAEFDKRCAGLGFDDFATDNLWGLLDDQKTATRVV 667 Query 660 PTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIV 719 PTD+TLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYG+DEKPTASD+GIV Sbjct 668 PTDTTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGLDEKPTASDDGIV 727 Query 720 VRLPDTVS-AGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRH 778 VRLPDT+S G ++PPGAELF+FDADEID IVT EV SALFASRFRESAARALLLPRRH Sbjct 728 VRLPDTISDTGTETPPGAELFLFDADEIDAIVTAEVGASALFASRFRESAARALLLPRRH 787 Query 779 PGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVR 838 PGRRSPLW QRQRAA+LL+VARKYPDFP+VLETVRECLQDVYDVP L LM IAQRRVR Sbjct 788 PGRRSPLWHQRQRAAQLLDVARKYPDFPMVLETVRECLQDVYDVPTLTTLMTDIAQRRVR 847 Query 839 VAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELL 898 VAE ET KPSPFAASLLFGYVGAFMYEGD PLAERRAAAL+LD TLLAELLGRVELRELL Sbjct 848 VAETETTKPSPFAASLLFGYVGAFMYEGDVPLAERRAAALSLDSTLLAELLGRVELRELL 907 Query 899 DPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARA---GAPEVSGWLDG 955 DP+VIAAT RQLQHL ADR ARDAEGVADLLRLLGPLTEDE+AAR+ G ++ GWL+G Sbjct 908 DPEVIAATGRQLQHLCADRAARDAEGVADLLRLLGPLTEDEVAARSDTTGGTDIGGWLEG 967 Query 956 LRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYAR 1015 LRAA+RAL VS+AGRSWWVAVED+GRLRDGVGAAVPVGLPA+FTEAVADPL ELLGRYAR Sbjct 968 LRAARRALEVSYAGRSWWVAVEDIGRLRDGVGAAVPVGLPAAFTEAVADPLAELLGRYAR 1027 Query 1016 THTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAK-GSAGGEQWCDAEVLR 1074 TH PFTTA AA RFGLGLRVTADVLGRLASDGRLVRG+FVA G AG EQWCDAEVLR Sbjct 1028 THPPFTTAEAAGRFGLGLRVTADVLGRLASDGRLVRGDFVATGVFGGAGSEQWCDAEVLR 1087 Query 1075 ILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNS---GIDGLAAVIDQLAGVRIPAS 1131 ILRRRSLAALRAQ EPVSTAAYGRFLP W V +S GID LA+VIDQLAGVRIPAS Sbjct 1088 ILRRRSLAALRAQVEPVSTAAYGRFLPEWHQVGGADSSHGGIDRLASVIDQLAGVRIPAS 1147 Query 1132 AIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAE 1191 A+EPLVLAPR+RDYSPAMLDELLA+G+VTW+GAGSISGSDGW+ LH ADSAP+TLA PAE Sbjct 1148 ALEPLVLAPRVRDYSPAMLDELLATGEVTWAGAGSISGSDGWVTLHLADSAPLTLAAPAE 1207 Query 1192 IDFTDAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVL 1251 I+F +AHRAIL +L GGAYFFRQL D EA +KAALWELIWAGRV GDTFAPVRA+L Sbjct 1208 IEFGEAHRAILDTLAGGGAYFFRQLIGDIPDEAAIKAALWELIWAGRVCGDTFAPVRALL 1267 Query 1252 GGA--GTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHY 1309 GG G+RKR+APAH GHRPPRLSRY + HAQ R+ DPTVAGRWS LP PEPDST+RAHY Sbjct 1268 GGGGPGSRKRSAPAHRGHRPPRLSRYSVAHAQPRSVDPTVAGRWSLLPPPEPDSTVRAHY 1327 Query 1310 QAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVAS 1369 QAELLLNRHGVLTK AVA+EGV GGFATLYKVLSAFEDAGRCQRGYF+ESLGGAQFAVA+ Sbjct 1328 QAELLLNRHGVLTKGAVASEGVPGGFATLYKVLSAFEDAGRCQRGYFVESLGGAQFAVAA 1387 Query 1370 TVDRLRSYLDG----VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGT---ARPGRK 1422 TVDRLRSYLD D +P Y AV+LAAADPANPYGAALPWP S DG+ ARPGRK Sbjct 1388 TVDRLRSYLDDPSAFTDSRRPQYQAVLLAAADPANPYGAALPWPTSDDDGSNVGARPGRK 1447 Query 1423 AGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGM 1482 AGALVVLVDG LAWFLERGGR+LLTFTDDPEAN AAAI LADLV RV S+LVER +G+ Sbjct 1448 AGALVVLVDGALAWFLERGGRTLLTFTDDPEANAAAAIALADLVATRRVGSLLVERINGV 1507 Query 1483 PVLQPG-GRASAALTALLAAGFVRTPRGLRRR 1513 PVLQ G G+AS A+TAL AGF+RTPRGLR R Sbjct 1508 PVLQAGAGQASLAVTALADAGFLRTPRGLRLR 1539 >gi|118462983|ref|YP_883408.1| DEAD/DEAH box helicase [Mycobacterium avium 104] gi|118164270|gb|ABK65167.1| DEAD/DEAH box helicase [Mycobacterium avium 104] Length=1543 Score = 2424 bits (6281), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1266/1535 (83%), Positives = 1370/1535 (90%), Gaps = 34/1535 (2%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L RFSA+TR+WFTSTFAAPT AQA AW+AIADG NTLVIAPTGSGKTLAAFLWALDSLAG Sbjct 13 LGRFSAITREWFTSTFAAPTTAQAQAWSAIADGHNTLVIAPTGSGKTLAAFLWALDSLAG 72 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 +ER TRVLYVSPLKALAVDVERNLRTPLAGLTR+AER GLPAP I VGVRSGDT Sbjct 73 ---QAERAPGTRVLYVSPLKALAVDVERNLRTPLAGLTRIAERAGLPAPDISVGVRSGDT 129 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 PPA+RRQL+++PPDVLITTPESLFLMLTSAAR+TL GVQTVI+DEIHAIA KRGAHLAL Sbjct 130 PPAVRRQLINRPPDVLITTPESLFLMLTSAARETLAGVQTVIVDEIHAIAGGKRGAHLAL 189 Query 189 SLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSP---TTIVAPPAAKTVELSVQVP 245 SLERLD L R AQRIGLSATVRPP+ELARFLSG +P TT+VAPP+AKTVELSVQVP Sbjct 190 SLERLDALREGRPAQRIGLSATVRPPDELARFLSGAAPGTRTTVVAPPSAKTVELSVQVP 249 Query 246 VPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELA 305 VPDMANL +NTIWPDVE RLVDLIE+H STIVFANSRRLAERLTARLNEIHA R G+EL+ Sbjct 250 VPDMANLANNTIWPDVENRLVDLIEAHGSTIVFANSRRLAERLTARLNEIHAERSGVELS 309 Query 306 PDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATS 365 N +VAGGAPAHIM SGQT+G P+LARAHHGS+SKEQRA+VEEDLKRG LKAVVATS Sbjct 310 ATANPKVAGGAPAHIMASGQTYGVEPILARAHHGSVSKEQRALVEEDLKRGLLKAVVATS 369 Query 366 SLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSV 425 SLELGIDMGAVDLVIQV+APPSVASGLQRIGRAGHQVGE+SRGVLFPKHRTDL+GCAV+V Sbjct 370 SLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEVSRGVLFPKHRTDLIGCAVTV 429 Query 426 QRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEAT 485 QRMLAG+IETMRVPANPLDILAQ TVAAAALEPLDAD WFDTVRRAAPFATLPRS++EAT Sbjct 430 QRMLAGQIETMRVPANPLDILAQQTVAAAALEPLDADRWFDTVRRAAPFATLPRSIYEAT 489 Query 486 LDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLAT-- 543 LDLLSGKYPSTEFAELRPRLVYDR+TGTLTARPGAQRLAVTSGGAIPDRGLF VYLA+ Sbjct 490 LDLLSGKYPSTEFAELRPRLVYDRNTGTLTARPGAQRLAVTSGGAIPDRGLFTVYLASEA 549 Query 544 ERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDA 603 E+PSRVGEL+EEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGD Sbjct 550 EKPSRVGELEEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDGV 609 Query 604 GRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDS 663 GRPAELGAALGA TGELA L R F +RCA LGFD YA DNL+ L D+QRTA VVPTD+ Sbjct 610 GRPAELGAALGAFTGELAGLSREEFDSRCAALGFDAYAVDNLYGLFDEQRTAAGVVPTDT 669 Query 664 TLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLP 723 TLLVERFRDELGDWRVILHSPYGL V+GPLALAVGRRLR+RYGIDEKPTASD+G+VVRLP Sbjct 670 TLLVERFRDELGDWRVILHSPYGLGVNGPLALAVGRRLRERYGIDEKPTASDDGVVVRLP 729 Query 724 DTV----SAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHP 779 DTV S G D+PPGAELFVFDADEIDPIVT EV GSALFASRFRE AARALLLPRRHP Sbjct 730 DTVSDFASDGGDTPPGAELFVFDADEIDPIVTAEVGGSALFASRFRECAARALLLPRRHP 789 Query 780 GRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRV 839 GRRSPLWQQRQRAA+LLEVARKYPDFP+VLETVRECLQDVYDVP LV LMA IAQRRVRV Sbjct 790 GRRSPLWQQRQRAAQLLEVARKYPDFPVVLETVRECLQDVYDVPALVALMAGIAQRRVRV 849 Query 840 AEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLD 899 E ET +PSPFAASLLFGYVGAFMYEGD+PLAERRAAAL+LD TLLAELLGRVELRELLD Sbjct 850 LEVETQRPSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDSTLLAELLGRVELRELLD 909 Query 900 PDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAG---APEVSGWLDGL 956 P+V+AAT+R LQHLA +R ARDAE VADLLRLLGPLTEDE+ ARAG A EV GWL+GL Sbjct 910 PEVVAATARALQHLAPERAARDAEAVADLLRLLGPLTEDEVVARAGGADAVEVRGWLEGL 969 Query 957 RAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYART 1016 RAA+RA+ VSFAGRSWWVA+ED+GRLRDG+G AVP+G+PA+FTE VADPLGELLGRYART Sbjct 970 RAARRAVPVSFAGRSWWVAIEDIGRLRDGLGIAVPLGVPAAFTEEVADPLGELLGRYART 1029 Query 1017 HTPFTTAAAAARFGLGLRVTADVLGRLA----SDGRLVRGEFVAAAKGSAGG----EQWC 1068 HTPF+TA AAARFGLGLRVTADVLGRLA S GRLVRG+FVAA GG EQWC Sbjct 1030 HTPFSTAEAAARFGLGLRVTADVLGRLADPSTSQGRLVRGDFVAARPSEPGGVLGAEQWC 1089 Query 1069 DAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSA-------GNSGIDGLAAVID 1121 DA+VLRILRRRSLAALRAQ EPVSTAAYGRFLPAW V A G+SG+DGL +VI+ Sbjct 1090 DADVLRILRRRSLAALRAQVEPVSTAAYGRFLPAWHRVGAAESSRAPGHSGLDGLMSVIE 1149 Query 1122 QLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADS 1181 QLAGVR+PASA+EPLVLAPR+RDYSPA+LDELLA+G+VTWSGAGSISGSDGWIALHP++S Sbjct 1150 QLAGVRLPASALEPLVLAPRVRDYSPALLDELLATGEVTWSGAGSISGSDGWIALHPSES 1209 Query 1182 APMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTG 1241 AP+TL PA+I+ +AHRAIL L GG YFFRQL DG+++AELKAALWEL+WAG +TG Sbjct 1210 APLTLQGPADIELGEAHRAILDVLAGGGGYFFRQLATDGVSDAELKAALWELVWAGWITG 1269 Query 1242 DTFAPVRAVLGGAGTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEP 1301 DTFAPVRA+LGG GTR+R+APAH RPPRLSRY + H QAR AD TVAGRWS LP PEP Sbjct 1270 DTFAPVRALLGGGGTRRRSAPAHRAQRPPRLSRYSVAHPQARPADTTVAGRWSVLPPPEP 1329 Query 1302 DSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLG 1361 DST+RAH+QAELLL RHGVLT+ AVAAEGVAGGFATLYKVLS FEDAGRCQRGYFIESLG Sbjct 1330 DSTVRAHFQAELLLGRHGVLTRGAVAAEGVAGGFATLYKVLSTFEDAGRCQRGYFIESLG 1389 Query 1362 GAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGR 1421 GAQFAVASTVDRLR + DGVDP++P+Y A+VLAAADPANPYGAALPWPASSADG ARPGR Sbjct 1390 GAQFAVASTVDRLRGFADGVDPQRPEYRAIVLAAADPANPYGAALPWPASSADG-ARPGR 1448 Query 1422 KAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADG 1481 KAGALVVLVDGELAWFLERGGRSLLTFTDDP A HAAA LA LV+A RVA+ILVER DG Sbjct 1449 KAGALVVLVDGELAWFLERGGRSLLTFTDDPAAQHAAAAALAGLVSARRVAAILVERIDG 1508 Query 1482 MPVLQPGGRASA---ALTALLAAGFVRTPRGLRRR 1513 +P L P G +A ALTAL AGF RTPRG+R R Sbjct 1509 VPALAPRGDGAAGNDALTALADAGFARTPRGMRLR 1543 >gi|41409513|ref|NP_962349.1| hypothetical protein MAP3415 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398344|gb|AAS05965.1| Lhr [Mycobacterium avium subsp. paratuberculosis K-10] Length=1546 Score = 2422 bits (6278), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1269/1543 (83%), Positives = 1374/1543 (90%), Gaps = 35/1543 (2%) Query 2 RFAQPS-ALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 R ++PS L RFSA+TR+WFTSTFAAPT AQA AW+AIADG NTLVIAPTGSGKTLAAFL Sbjct 8 RPSRPSDPLGRFSAITREWFTSTFAAPTTAQAQAWSAIADGHNTLVIAPTGSGKTLAAFL 67 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAG SER TRVLYVSPLKALAVDVERNLRTPLAGLTR+AER GLPAP I Sbjct 68 WALDSLAG---QSERAPGTRVLYVSPLKALAVDVERNLRTPLAGLTRIAERAGLPAPDIS 124 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPA+RRQL+++PPDVLITTPESLFLMLTSAAR+TL GVQTVI+DEIHAIA Sbjct 125 VGVRSGDTPPAVRRQLINRPPDVLITTPESLFLMLTSAARETLAGVQTVIVDEIHAIAGG 184 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSP---TTIVAPPAAKT 237 KRGAHLALSLERLD L R AQRIGLSATVRPPEELARFLSG +P TT+VAPP+AKT Sbjct 185 KRGAHLALSLERLDALREGRPAQRIGLSATVRPPEELARFLSGTAPGARTTVVAPPSAKT 244 Query 238 VELSVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHA 297 VELSVQVPVPDMANL +NTIWPDVE RLVDLIE+H STIVFANSRRLAERLTARLNEIHA Sbjct 245 VELSVQVPVPDMANLANNTIWPDVENRLVDLIEAHGSTIVFANSRRLAERLTARLNEIHA 304 Query 298 ARCGIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQ 357 R G+EL+ N +VAGGAPAHIM SGQT+G P+LARAHHGS+SKEQRA+VEEDLKRG Sbjct 305 ERSGVELSATANPKVAGGAPAHIMASGQTYGVEPILARAHHGSVSKEQRALVEEDLKRGL 364 Query 358 LKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTD 417 LKAVVATSSLELGIDMGAVDLVIQV+APPSVASGLQRIGRAGHQVGE+SRGVLFPKHRTD Sbjct 365 LKAVVATSSLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEVSRGVLFPKHRTD 424 Query 418 LLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATL 477 L+GCAV+ QRMLAG+IETMRVPANPLDILAQ TVAAAALEPLDAD WF+TVRRAAPFATL Sbjct 425 LIGCAVTAQRMLAGQIETMRVPANPLDILAQQTVAAAALEPLDADRWFETVRRAAPFATL 484 Query 478 PRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLF 537 PRS++EATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLF Sbjct 485 PRSIYEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLF 544 Query 538 AVYLAT--ERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARL 595 VYLA+ E+PSRVGEL+EEMVYESRPGDVISL ATSWRITEITHDRVLVIPAPGQPARL Sbjct 545 TVYLASEAEKPSRVGELEEEMVYESRPGDVISLAATSWRITEITHDRVLVIPAPGQPARL 604 Query 596 PFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTA 655 PFWRGD GRPAELGAALGA TGELA L R F +RCA LGFD YA DNL+ L D+QRTA Sbjct 605 PFWRGDGVGRPAELGAALGAFTGELAGLSREEFDSRCAALGFDAYAVDNLYGLFDEQRTA 664 Query 656 TAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASD 715 VVPTD+TLLVERFRDELGDWRVILHSPYGL V+GPLALAVGRRLR+RYGIDEKPTASD Sbjct 665 AGVVPTDTTLLVERFRDELGDWRVILHSPYGLGVNGPLALAVGRRLRERYGIDEKPTASD 724 Query 716 NGIVVRLPDTV----SAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARA 771 +G+VVRLPDTV S G D+PPGAELFVFDADEIDPIVT EV GSALFASRFRE AARA Sbjct 725 DGVVVRLPDTVSDFASDGGDTPPGAELFVFDADEIDPIVTAEVGGSALFASRFRECAARA 784 Query 772 LLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMAR 831 LLLPRRHPGRRSPLWQQRQRAA+LLEVARKYPDFP+VLETVRECLQDVYDVP LV LMA Sbjct 785 LLLPRRHPGRRSPLWQQRQRAAQLLEVARKYPDFPVVLETVRECLQDVYDVPALVALMAG 844 Query 832 IAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGR 891 IAQRRVRV E ET +PSPFAASLLFGYVGAFMYEGD+PLAERRAAAL+LD TLLAELLGR Sbjct 845 IAQRRVRVLEVETQRPSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDSTLLAELLGR 904 Query 892 VELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAG---APE 948 VELRELLDP+V+AAT+R LQHLA +R ARDAE VADLLRLLGPLTEDE+ ARAG A E Sbjct 905 VELRELLDPEVVAATARALQHLAPERAARDAEAVADLLRLLGPLTEDEVVARAGGADAVE 964 Query 949 VSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGE 1008 V GWL+GLRAA+RA+ VSFAGRSWWVA+ED+GRLRDG+G AVP+G+PA+FTE VADPLGE Sbjct 965 VRGWLEGLRAARRAVPVSFAGRSWWVAIEDIGRLRDGLGIAVPLGVPAAFTEEVADPLGE 1024 Query 1009 LLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLA----SDGRLVRGEFVAAAKGSAGG 1064 LLGRYARTHTPF+TA AAARFGLGLRVTADVLGRLA S GRLVRG+FVAA GG Sbjct 1025 LLGRYARTHTPFSTAEAAARFGLGLRVTADVLGRLADPSTSQGRLVRGDFVAARPSEPGG 1084 Query 1065 ----EQWCDAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSA-------GNSGI 1113 EQWCDA+VLRILRRRSLAALRAQ EPVSTAAYGRFLPAW V A G+SG+ Sbjct 1085 VLGAEQWCDADVLRILRRRSLAALRAQVEPVSTAAYGRFLPAWHRVGAAESSRAPGHSGL 1144 Query 1114 DGLAAVIDQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGW 1173 DGL +VI+QLAGVR+PASA+EPLVLAPR+RDYSPA+LDELLA+G+VTWSGAGSISGSDGW Sbjct 1145 DGLMSVIEQLAGVRLPASALEPLVLAPRVRDYSPALLDELLATGEVTWSGAGSISGSDGW 1204 Query 1174 IALHPADSAPMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWEL 1233 IALHP++SAP+TL PA+I+ +AHRAIL L GG YFFRQL DG+++AELKAA+WEL Sbjct 1205 IALHPSESAPLTLQGPADIELGEAHRAILDVLAGGGGYFFRQLATDGVSDAELKAAVWEL 1264 Query 1234 IWAGRVTGDTFAPVRAVLGGAGTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRW 1293 +WAG +TGDTFAPVRA+LGG GTR+R+APAH RPPRLSRY + H QAR ADPTVAGRW Sbjct 1265 VWAGWITGDTFAPVRALLGGGGTRRRSAPAHRAQRPPRLSRYSVAHPQARPADPTVAGRW 1324 Query 1294 SALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQR 1353 S LP PEPDST+RAH+QAELLL RHGVLT+ AVAAEGVAGGFATLYKVLS FEDAGRCQR Sbjct 1325 SLLPPPEPDSTVRAHFQAELLLGRHGVLTRGAVAAEGVAGGFATLYKVLSTFEDAGRCQR 1384 Query 1354 GYFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSA 1413 GYFIESLGGAQFAVASTVDRLR + DGVDP++P+Y A+VLAAADPANPYGAALPWPASSA Sbjct 1385 GYFIESLGGAQFAVASTVDRLRGFADGVDPQRPEYRAIVLAAADPANPYGAALPWPASSA 1444 Query 1414 DGTARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVAS 1473 DG ARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDP A HAAA LA LV+A RVA+ Sbjct 1445 DG-ARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPAAQHAAAAALAGLVSARRVAA 1503 Query 1474 ILVERADGMPVLQPGGRASA---ALTALLAAGFVRTPRGLRRR 1513 ILVER DG+P L P G +A ALTAL AGF RTPRG+R R Sbjct 1504 ILVERIDGVPALAPRGDGAAGNDALTALADAGFARTPRGMRLR 1546 >gi|240171592|ref|ZP_04750251.1| ATP-dependent helicase Lhr [Mycobacterium kansasii ATCC 12478] Length=1408 Score = 2328 bits (6034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1212/1410 (86%), Positives = 1287/1410 (92%), Gaps = 22/1410 (1%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L RFSA+TRDWF STFAAPTAAQASAWAAIA GDNTLVIAPTGSGKTLAAFLWALDSLA Sbjct 6 LGRFSAITRDWFASTFAAPTAAQASAWAAIAAGDNTLVIAPTGSGKTLAAFLWALDSLAA 65 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 + +R A TRVLYVSPLKAL VDVERNLRTPLAGLTRLAER+GLPAP I VGVRSGDT Sbjct 66 A---PDRQAGTRVLYVSPLKALGVDVERNLRTPLAGLTRLAERRGLPAPDISVGVRSGDT 122 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 PPA RRQL+++PPDVLITTPESLFLMLTSAAR+TL V+TVI+DEIHAIAATKRGAHLAL Sbjct 123 PPAARRQLIARPPDVLITTPESLFLMLTSAARETLANVETVIVDEIHAIAATKRGAHLAL 182 Query 189 SLERLDDLS----SRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQV 244 SLERLDDL+ RRRAQRIGLSATVRPPEELARFLSG+SPTTIVAPPAAKT+ELSVQV Sbjct 183 SLERLDDLAPGPAGRRRAQRIGLSATVRPPEELARFLSGRSPTTIVAPPAAKTLELSVQV 242 Query 245 PVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIEL 304 PVPDMANL +N+IWPDVEARLVDLIE+HNSTIVFANSRRLAERLTARLNEIHA RCG EL Sbjct 243 PVPDMANLANNSIWPDVEARLVDLIEAHNSTIVFANSRRLAERLTARLNEIHAERCGEEL 302 Query 305 --APD--TNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 APD TN +VAGGAPAHIM SGQ+FGAP +LARAHHGS+SKEQRA+VEEDLKRG L+A Sbjct 303 PAAPDQKTNPKVAGGAPAHIMASGQSFGAPLLLARAHHGSVSKEQRALVEEDLKRGLLRA 362 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQV+APPSVA+GLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 363 VVATSSLELGIDMGAVDLVIQVEAPPSVANGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 422 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAG+IETMRVPANPLDILAQHTVAAAALEPL+AD WFDTVRR+APFATLPR Sbjct 423 CAVSVQRMLAGQIETMRVPANPLDILAQHTVAAAALEPLNADRWFDTVRRSAPFATLPRG 482 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 FEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLF V+ Sbjct 483 AFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFTVW 542 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATE+PSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 543 LATEKPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 602 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DD GR AELGAALGALTGELA L+R FG RCA L FDDYATDNLW LLDDQR AT VVP Sbjct 603 DDVGRSAELGAALGALTGELARLNRDEFGKRCAALSFDDYATDNLWGLLDDQRAATRVVP 662 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TD+TLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLR+RY IDEKPTASD+GIVV Sbjct 663 TDTTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRERYDIDEKPTASDDGIVV 722 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDT D+PPGAELFVFDA+EID ++T EV SALFASRFRESAARALLLPRRHPG Sbjct 723 RLPDT----GDTPPGAELFVFDAEEIDDVITAEVGESALFASRFRESAARALLLPRRHPG 778 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLW QRQRAA+LLEVARKYPDFPIVLETVRECLQDVYD P L LMA IAQRRVR+A Sbjct 779 RRSPLWHQRQRAAQLLEVARKYPDFPIVLETVRECLQDVYDGPTLTRLMADIAQRRVRIA 838 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EA+TA PSPFAASLLFGYVGAF+YEGD PLAERRAAAL+LD TLLAELLGRVELRELLDP Sbjct 839 EADTATPSPFAASLLFGYVGAFIYEGDVPLAERRAAALSLDSTLLAELLGRVELRELLDP 898 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 +VI AT RQLQHL ADR ARDAEGVADLLRLLGPLTEDE+AARAGAP+V GWL+GLRAA+ Sbjct 899 EVIVATGRQLQHLTADRAARDAEGVADLLRLLGPLTEDEVAARAGAPDVGGWLEGLRAAR 958 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RAL VSFAGR+WWVAVED+GRLRDGVGAAVPVGLPA+FTE VADPLGELLGRYARTHTPF Sbjct 959 RALTVSFAGRNWWVAVEDIGRLRDGVGAAVPVGLPATFTEEVADPLGELLGRYARTHTPF 1018 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEF-VAAAKGSAGGEQWCDAEVLRILRRR 1079 TTA AAARFGLGLRVT DVLGRLA DGRLVRG+F VAAA G G +QWCDAEVLRILRRR Sbjct 1019 TTAEAAARFGLGLRVTTDVLGRLAGDGRLVRGDFVVAAAPGGVGSQQWCDAEVLRILRRR 1078 Query 1080 SLAALRAQAEPVSTAAYGRFLPAWQHVSAGNS-GIDGLAAVIDQLAGVRIPASAIEPLVL 1138 SLAALRAQ EPVST AYGRFLP W HV A ++ G+D LAAVIDQLAG RIPASA+EPLVL Sbjct 1079 SLAALRAQVEPVSTTAYGRFLPEWHHVGATDTGGVDRLAAVIDQLAGARIPASALEPLVL 1138 Query 1139 APRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLA----EPAEIDF 1194 APR+RDYSPAMLDELLASG+V WSGAG ISGSDGW++LH ADSAP+TLA +PAEI+ Sbjct 1139 APRVRDYSPAMLDELLASGEVIWSGAGLISGSDGWVSLHLADSAPLTLALPANQPAEIEL 1198 Query 1195 TDAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGA 1254 TDAHR IL L GGAYFFRQLT +G TE +LK ALWELIWAG VTGDTFAPVRA+LGG Sbjct 1199 TDAHRVILDMLTGGGAYFFRQLTGNGHTETDLKTALWELIWAGWVTGDTFAPVRAILGGG 1258 Query 1255 -GTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAEL 1313 G RKR+APAH GHRPPRLSRY + HAQAR DPTVAGRWSALP EPDSTL+AHY AEL Sbjct 1259 PGARKRSAPAHRGHRPPRLSRYSVAHAQARAPDPTVAGRWSALPTAEPDSTLQAHYHAEL 1318 Query 1314 LLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDR 1373 LLNRHGVLTK A AAEGV GGFATLYKVLSAFE+AGRCQRGYF+ESLGGAQFAVASTVDR Sbjct 1319 LLNRHGVLTKGAAAAEGVPGGFATLYKVLSAFEEAGRCQRGYFVESLGGAQFAVASTVDR 1378 Query 1374 LRSYLDGVDPEQPDYHAVVLAAADPANPYG 1403 LRSYLDG+DP++P+Y AVVLAAADPANPYG Sbjct 1379 LRSYLDGIDPQRPEYRAVVLAAADPANPYG 1408 >gi|126433895|ref|YP_001069586.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. JLS] gi|126233695|gb|ABN97095.1| ATP dependent helicase, Lhr family [Mycobacterium sp. JLS] Length=1523 Score = 2287 bits (5926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1196/1518 (79%), Positives = 1314/1518 (87%), Gaps = 18/1518 (1%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 LSRFS LTR+WF TF PT AQA AW+AIADGDNTLVIAPTGSGKTLAAFLWA+D LA Sbjct 11 LSRFSPLTREWFAGTFVEPTPAQAQAWSAIADGDNTLVIAPTGSGKTLAAFLWAIDRLAS 70 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 SEP R A TRVLYVSPLKALAVDVERNLRTPL G+ R+A+R G AP I VGVRSGDT Sbjct 71 SEPRPAR-AGTRVLYVSPLKALAVDVERNLRTPLTGIARIADRHGEQAPTISVGVRSGDT 129 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 PA RR+LV++PPD+LITTPESLFLMLTSAAR TL VQTVI+DE+HA+AATKRGAHLAL Sbjct 130 TPAQRRELVTRPPDILITTPESLFLMLTSAARDTLAEVQTVIVDEVHALAATKRGAHLAL 189 Query 189 SLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVPD 248 SLERLD L R AQRIGLSATVRPPEE+ARFLSG +PTTIVAPPAAKT +LSVQVPVPD Sbjct 190 SLERLDQLLERP-AQRIGLSATVRPPEEVARFLSGHAPTTIVAPPAAKTFDLSVQVPVPD 248 Query 249 MANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELAPDT 308 MA+L +NTIWPDVE ++VDLIE+H S+IVFANSRRLAERLT+RLNEIHA R G EL Sbjct 249 MADLENNTIWPDVEEQIVDLIEAHRSSIVFANSRRLAERLTSRLNEIHAERTGTEL-DGR 307 Query 309 NQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLE 368 N +V GGAPA +MGSGQTFGA P+LA+AHHGS+SKEQRA+VE+DLK G+LKAVVATSSLE Sbjct 308 NDRVGGGAPAQVMGSGQTFGAEPLLAKAHHGSVSKEQRAIVEDDLKSGRLKAVVATSSLE 367 Query 369 LGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRM 428 LGIDMGAVDLVIQV++PPSVASGLQR+GRAGHQVGEIS+GVLFPKHRTDL+GCAV+VQRM Sbjct 368 LGIDMGAVDLVIQVESPPSVASGLQRVGRAGHQVGEISQGVLFPKHRTDLIGCAVTVQRM 427 Query 429 LAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDL 488 LAG+IETMRVPANPLD+LAQHTVAAAALEPLDAD WFD VRR+APFATLPRS FEATLDL Sbjct 428 LAGQIETMRVPANPLDVLAQHTVAAAALEPLDADRWFDAVRRSAPFATLPRSAFEATLDL 487 Query 489 LSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLAT--ERP 546 LSGKYPSTEFAELRPRLVYDRD GTLTARPGAQRLAVTSGGAIPDRGLFAVYLAT E+P Sbjct 488 LSGKYPSTEFAELRPRLVYDRDAGTLTARPGAQRLAVTSGGAIPDRGLFAVYLATDSEKP 547 Query 547 SRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDAGRP 606 SRVGELDEEMVYESRP DVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGD GRP Sbjct 548 SRVGELDEEMVYESRPSDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDGVGRP 607 Query 607 AELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDSTLL 666 AELGAA+GA TGELAAL AF RC +GF+DYATDNL+RLLDDQR AT VPTD+T + Sbjct 608 AELGAAVGAFTGELAALGTDAFTQRCRTMGFNDYATDNLYRLLDDQRQATGTVPTDTTFI 667 Query 667 VERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPDTV 726 VERFRDELGDWR+ILHSPYGLRVHGPLALAVGRRLR+RYGIDEKPTASD+GI+VRLPDT Sbjct 668 VERFRDELGDWRIILHSPYGLRVHGPLALAVGRRLRERYGIDEKPTASDDGIIVRLPDTD 727 Query 727 SAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSPLW 786 + A+LFVFDADEI+PIVT EV GSALFASRFRE AARALLLPRRHPG+RSPLW Sbjct 728 FESGGTVSFADLFVFDADEIEPIVTAEVGGSALFASRFRECAARALLLPRRHPGKRSPLW 787 Query 787 QQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEAETAK 846 QRQRAA+LL+VARKYPDFP+VLE VRECLQDVYDVP L+ELM RIAQRR+R+ E ET Sbjct 788 HQRQRAAQLLDVARKYPDFPVVLEAVRECLQDVYDVPALIELMHRIAQRRLRIVEVETTT 847 Query 847 PSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDVIAAT 906 PSPFAASLLFGYVGAFMYEGD+PLAERRAAAL+LD TLLAELLGRVELRELLD +VIAAT Sbjct 848 PSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDSTLLAELLGRVELRELLDAEVIAAT 907 Query 907 SRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAKRALVVS 966 +RQLQHLA DR A+DAEGVADLLRLLGPLT +EIA R+ +V GWL+GL +AKR L VS Sbjct 908 ARQLQHLAEDRRAKDAEGVADLLRLLGPLTAEEIAQRSTTDDVGGWLEGLLSAKRVLTVS 967 Query 967 FAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAAAA 1026 FAG++WWVA+ED+G LRDGVG AVPVG+P SF + V DPLGEL+GRYARTH PFTTA AA Sbjct 968 FAGQTWWVAIEDVGLLRDGVGIAVPVGVPLSFLDPVVDPLGELIGRYARTHGPFTTAEAA 1027 Query 1027 ARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGS-AGGEQWCDAEVLRILRRRSLAALR 1085 ARFGLGLRVTADVLGRLA DGRLVRGEF A G AG EQWCD +VL+ILRRRSLAALR Sbjct 1028 ARFGLGLRVTADVLGRLAVDGRLVRGEFTDAPPGDPAGSEQWCDGDVLKILRRRSLAALR 1087 Query 1086 AQAEPVSTAAYGRFLPAWQHVSAGNS-GIDGLAAVIDQLAGVRIPASAIEPLVLAPRIRD 1144 AQ EPVSTAAY RFLPAWQHV + +S G+DGLA+ IDQLAGV IPASA+EPLVL+ R+RD Sbjct 1088 AQVEPVSTAAYARFLPAWQHVGSTHSAGVDGLASAIDQLAGVPIPASAVEPLVLSQRVRD 1147 Query 1145 YSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRAILAS 1204 Y PAMLDELLASG++ WSGAG I G DGWIA H ADSAP+TL P E++FT+ HRAI+ + Sbjct 1148 YQPAMLDELLASGEIMWSGAGQIGGGDGWIAFHHADSAPLTLTAPVELEFTETHRAIMDT 1207 Query 1205 LGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGA--GTRKRAAP 1262 L GGAYFFRQL DG +E K ALWELIW G VTGDTFAPVRA+L G+ T +R AP Sbjct 1208 LAAGGAYFFRQLA-DGDSET-FKTALWELIWTGWVTGDTFAPVRAILSGSRRSTGRRGAP 1265 Query 1263 AHGGH-RPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGVL 1321 AH RPPRLS Y + HAQ R +DPTVAGRWSALP EPDST+RAH+ AELLLNRHGVL Sbjct 1266 AHRQRSRPPRLSSYSIAHAQTRASDPTVAGRWSALPAAEPDSTVRAHFSAELLLNRHGVL 1325 Query 1322 TKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDGV 1381 TK A AEGV GGFA LYKVL+AFEDAGRCQRGYF+ESLGGAQFAVASTVDRLR+YLD V Sbjct 1326 TKGAAVAEGVPGGFAMLYKVLTAFEDAGRCQRGYFVESLGGAQFAVASTVDRLRTYLDEV 1385 Query 1382 DPEQPDYHAVVLAAADPANPYGAALPWPASSADGTA----RPGRKAGALVVLVDGELAWF 1437 D E+ +Y AVVLAAADPANPYGAALPWPA +ADG A RPGRKAGALV LVDGELAWF Sbjct 1386 DQERREYRAVVLAAADPANPYGAALPWPARTADGDAEGSHRPGRKAGALVALVDGELAWF 1445 Query 1438 LERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQP--GGRASAAL 1495 LERGGRSLL+FTDD +A AAA LADLV GRV S+LVE+ +G+ VL+P GG +A Sbjct 1446 LERGGRSLLSFTDDADAQLAAAAALADLVGRGRVHSLLVEKVNGVGVLEPAQGGVRAAVH 1505 Query 1496 TALLAAGFVRTPRGLRRR 1513 AL+ AGF RTPRGLR R Sbjct 1506 DALIGAGFTRTPRGLRLR 1523 >gi|108798238|ref|YP_638435.1| DEAD/H associated [Mycobacterium sp. MCS] gi|119867334|ref|YP_937286.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. KMS] gi|108768657|gb|ABG07379.1| ATP dependent helicase, Lhr family [Mycobacterium sp. MCS] gi|119693423|gb|ABL90496.1| ATP dependent helicase, Lhr family [Mycobacterium sp. KMS] Length=1523 Score = 2276 bits (5897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1194/1520 (79%), Positives = 1305/1520 (86%), Gaps = 22/1520 (1%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 LSRFS LTR+WF TF PT AQA AW+AIADGDNTLVIAPTGSGKTLAAFLWA+D LA Sbjct 11 LSRFSPLTREWFAGTFVEPTPAQAQAWSAIADGDNTLVIAPTGSGKTLAAFLWAIDRLAS 70 Query 69 SEPMSERP--AATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSG 126 SEP RP A TRVLYVSPLKALAVDVERNLRTPL G+ R+AER G P I VGVRSG Sbjct 71 SEP---RPSGAGTRVLYVSPLKALAVDVERNLRTPLTGIARIAERNGHTPPDISVGVRSG 127 Query 127 DTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHL 186 DT PA RR+LV++PPD+LITTPESLFLMLTSAAR TL VQTVI+DE+HA+AATKRGAHL Sbjct 128 DTTPAQRRELVTRPPDILITTPESLFLMLTSAARDTLAEVQTVIVDEVHALAATKRGAHL 187 Query 187 ALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPV 246 ALSLERLD L R AQRIGLSATVRPPEE+ARFLSG +PTTIVAPPAAKT +LSVQVPV Sbjct 188 ALSLERLDQLLERP-AQRIGLSATVRPPEEVARFLSGHAPTTIVAPPAAKTFDLSVQVPV 246 Query 247 PDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELAP 306 PDMA+L +NTIWPDVE ++VDLIE+H S+IVFANSRRLAERLT+RLNEIHA R G L Sbjct 247 PDMADLENNTIWPDVEEQIVDLIEAHRSSIVFANSRRLAERLTSRLNEIHAERTGTAL-D 305 Query 307 DTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSS 366 N +V GAPA +MGSGQTFGA P+LA+AHHGS+SKEQRA+VE+DLK G+LKAVVATSS Sbjct 306 GRNDRVGAGAPAQLMGSGQTFGAEPLLAKAHHGSVSKEQRALVEDDLKSGRLKAVVATSS 365 Query 367 LELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQ 426 LELGIDMGAVDLVIQV+ PPSVASGLQR+GRAGHQVGEIS+GVLFPKHRTDL+GCA++VQ Sbjct 366 LELGIDMGAVDLVIQVETPPSVASGLQRVGRAGHQVGEISQGVLFPKHRTDLIGCAITVQ 425 Query 427 RMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATL 486 RML G+IETMRVPANPLD+LAQHTVAAAALEPLDAD WFD VRR+APFATLPRS FEATL Sbjct 426 RMLTGQIETMRVPANPLDVLAQHTVAAAALEPLDADRWFDAVRRSAPFATLPRSAFEATL 485 Query 487 DLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLAT--E 544 DLLSGKYPSTEFAELRPRLVYDRD GTLTARPGAQRLAVTSGGAIPDRG+F VYLAT E Sbjct 486 DLLSGKYPSTEFAELRPRLVYDRDAGTLTARPGAQRLAVTSGGAIPDRGMFTVYLATDSE 545 Query 545 RPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDAG 604 +PSRVGELDEEMVYESRP DVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGD G Sbjct 546 KPSRVGELDEEMVYESRPSDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDGVG 605 Query 605 RPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDST 664 RPAELGAA+GA TGELAAL AF RC +GF+DYATDNL+RLLDDQR AT VPTD+T Sbjct 606 RPAELGAAVGAFTGELAALGVDAFAQRCQAMGFNDYATDNLYRLLDDQRQATGTVPTDTT 665 Query 665 LLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPD 724 +VERFRDELGDWR+ILHSPYGLRVHGPLALAVGRRLR+RYGIDEKPTASD+GI+VRLPD Sbjct 666 FVVERFRDELGDWRIILHSPYGLRVHGPLALAVGRRLRERYGIDEKPTASDDGIIVRLPD 725 Query 725 TVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSP 784 T A+LFVFDADEI+PIVT EV GSALFASRFRE AARALLLPRRHPG+RSP Sbjct 726 TDFESGGVVSFADLFVFDADEIEPIVTEEVGGSALFASRFRECAARALLLPRRHPGKRSP 785 Query 785 LWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEAET 844 LW QRQRAA+LL+VARKYPDFPIVLE VRECLQDVYDVP LVELM RIAQRR+R+ E ET Sbjct 786 LWHQRQRAAQLLDVARKYPDFPIVLEAVRECLQDVYDVPALVELMHRIAQRRLRIVEVET 845 Query 845 AKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDVIA 904 PSPFAASLLFGYVGAFMYEGD+PLAERRAAAL+LD TLLAELLGRVELRELLD DVIA Sbjct 846 VTPSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDSTLLAELLGRVELRELLDADVIA 905 Query 905 ATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAKRALV 964 AT+RQLQHLA DR A+DAEGVADLLRLLGPLT +EIA R+ +V GWL+GL +AKR L Sbjct 906 ATARQLQHLAEDRRAKDAEGVADLLRLLGPLTSEEIAERSTTDDVGGWLEGLLSAKRVLT 965 Query 965 VSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAA 1024 VSFAG+ WWVA+ED+G LRDGVG AVPVG+P SF + V DPLGEL+GRYARTH PFTTA Sbjct 966 VSFAGQKWWVAIEDVGLLRDGVGIAVPVGVPLSFLDPVVDPLGELIGRYARTHGPFTTAE 1025 Query 1025 AAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGS-AGGEQWCDAEVLRILRRRSLAA 1083 AAARFGLGLRVTADVLGRL DGRLVRGEF G AG EQWCD +VL+ILRRRSLAA Sbjct 1026 AAARFGLGLRVTADVLGRLTVDGRLVRGEFTDLPAGDPAGNEQWCDGDVLKILRRRSLAA 1085 Query 1084 LRAQAEPVSTAAYGRFLPAWQHVSAGNS-GIDGLAAVIDQLAGVRIPASAIEPLVLAPRI 1142 LRAQ EPVSTAAY RFLPAWQHV + +S G+DGLA+ IDQLAGV IPASA+EPLVL+ R+ Sbjct 1086 LRAQVEPVSTAAYARFLPAWQHVGSTHSAGVDGLASAIDQLAGVPIPASAVEPLVLSQRV 1145 Query 1143 RDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRAIL 1202 RDY PAMLDELLASG++ WSGAG I G DGWIA H ADSAP+TL P E++FT+ HRAI Sbjct 1146 RDYQPAMLDELLASGEILWSGAGQIGGGDGWIAFHHADSAPLTLTAPVELEFTETHRAIT 1205 Query 1203 ASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGA--GTRKRA 1260 +L GGAYFFRQL DG TE K ALWELIWAG VTGDTFAPVRA+L G+ T +R Sbjct 1206 ETLAAGGAYFFRQLA-DGDTET-FKTALWELIWAGWVTGDTFAPVRAMLSGSRRSTGRRG 1263 Query 1261 APAHGGH-RPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHG 1319 APAH RPPRLS Y + HAQ R +DPTVAGRWSALP EPDST+RAH+ AELLLNRHG Sbjct 1264 APAHRQRARPPRLSSYSIAHAQTRASDPTVAGRWSALPAAEPDSTVRAHFSAELLLNRHG 1323 Query 1320 VLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLD 1379 VLTK A AEGV GGFA LYKVL+AFEDAGRCQRGYF+ESLGGAQFAVASTVDRLR+YLD Sbjct 1324 VLTKGAAVAEGVPGGFAMLYKVLTAFEDAGRCQRGYFVESLGGAQFAVASTVDRLRTYLD 1383 Query 1380 GVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTA----RPGRKAGALVVLVDGELA 1435 VD E+ +Y AVVLAAADPANPYGAALPWPA +ADG A RPGRKAGALV LVDGELA Sbjct 1384 EVDQERREYRAVVLAAADPANPYGAALPWPARTADGDAEGSHRPGRKAGALVALVDGELA 1443 Query 1436 WFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQP--GGRASA 1493 WFLERGGRSLL+FTDD +A AAA LADLV GRV S+LVE+ +G+ VL+P GG +A Sbjct 1444 WFLERGGRSLLSFTDDADAQLAAAAALADLVGRGRVQSLLVEKVNGVGVLEPAQGGVRAA 1503 Query 1494 ALTALLAAGFVRTPRGLRRR 1513 AL+ AGF RTPRGLR R Sbjct 1504 VHDALIGAGFTRTPRGLRLR 1523 >gi|118468040|ref|YP_886129.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155] gi|118169327|gb|ABK70223.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155] Length=1507 Score = 2271 bits (5886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1175/1515 (78%), Positives = 1300/1515 (86%), Gaps = 26/1515 (1%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L RFSALTR+WFT+ FAAPT AQA AW+AI++G+NTLVIAPTGSGKTLAAFLWA+D LA Sbjct 9 LGRFSALTREWFTTAFAAPTPAQADAWSAISEGNNTLVIAPTGSGKTLAAFLWAIDRLA- 67 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 +P E T+VLYVSPLKALAVDVERNLRTPL G+TR+AER GLPAP I VGVRSGDT Sbjct 68 -DPAREPSQGTQVLYVSPLKALAVDVERNLRTPLTGITRVAERHGLPAPSITVGVRSGDT 126 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 PP RR +++ PPDVLITTPESLFLMLTSAAR+TLT V+TVI+DE+HA+AATKRGAHLAL Sbjct 127 PPNQRRAMIANPPDVLITTPESLFLMLTSAARETLTSVRTVIVDEVHAVAATKRGAHLAL 186 Query 189 SLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVPD 248 SLERLD L AQRIGLSATVRPPEE+ARFLSGQ+PTTIV PPAAKT +LSVQVPVPD Sbjct 187 SLERLDQLLDTP-AQRIGLSATVRPPEEVARFLSGQAPTTIVCPPAAKTFDLSVQVPVPD 245 Query 249 MANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELAPDT 308 MANL +N+IWPDVE R+VDL+E+HNS+IVFANSRRLAERLT+RLNEIHA R GIEL Sbjct 246 MANLDNNSIWPDVEERIVDLVEAHNSSIVFANSRRLAERLTSRLNEIHAERSGIELPAGP 305 Query 309 NQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLE 368 N +V GGAPAH+MGSGQ GAPP+LARAHHGS+SKEQRA VE+DLK G+L+AVVATSSLE Sbjct 306 NPEVGGGAPAHLMGSGQANGAPPLLARAHHGSVSKEQRAQVEDDLKSGRLRAVVATSSLE 365 Query 369 LGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRM 428 LGIDMGAVDLVIQV+APPSVASGLQR+GRAGHQVGEIS+GVLFPKHRTDL+GCAV+VQRM Sbjct 366 LGIDMGAVDLVIQVEAPPSVASGLQRVGRAGHQVGEISQGVLFPKHRTDLIGCAVTVQRM 425 Query 429 LAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDL 488 G+IET+RVPANPLD+LAQHTVA AALEP+DADAWFD VRR+APFATLPRS FEATLDL Sbjct 426 QTGDIETLRVPANPLDVLAQHTVAVAALEPVDADAWFDAVRRSAPFATLPRSAFEATLDL 485 Query 489 LSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLA--TERP 546 LSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRG+F VYLA TE+P Sbjct 486 LSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGMFTVYLASETEKP 545 Query 547 SRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDAGRP 606 SRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGD GRP Sbjct 546 SRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDSVGRP 605 Query 607 AELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDSTLL 666 AELGAA+GA TGELA+LDR AF RC +GF YATDNL +LL +QR AT VVP+D+T + Sbjct 606 AELGAAVGAFTGELASLDRKAFDKRCQKMGFAGYATDNLHQLLREQREATGVVPSDTTFV 665 Query 667 VERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPDTV 726 VERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLR+RYGIDEKPTASD+GI+VRLPD+ Sbjct 666 VERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRERYGIDEKPTASDDGIIVRLPDS- 724 Query 727 SAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSPLW 786 D+PPGA+LFVFDADEI+PIVT EV GSALFASRFRE AARALLLPRRHPG+RSPLW Sbjct 725 ---GDTPPGADLFVFDADEIEPIVTAEVGGSALFASRFRECAARALLLPRRHPGKRSPLW 781 Query 787 QQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEAETAK 846 QRQRAA+LL++ARKYPDFPIVLE VRECLQDVYDVP L+ELM +IAQRR+R+ E ETA Sbjct 782 HQRQRAAQLLDIARKYPDFPIVLEAVRECLQDVYDVPALIELMHKIAQRRLRIVEVETAT 841 Query 847 PSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDVIAAT 906 PSPFAASLLFGYVGAFMYEGD+PLAERRAAALALD LL+ELLGRVELRELLDP V+A+T Sbjct 842 PSPFAASLLFGYVGAFMYEGDSPLAERRAAALALDTVLLSELLGRVELRELLDPAVVAST 901 Query 907 SRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAKRALVVS 966 S QLQHL +R ARDAEGVADLLRLLGPLTE +IA R A + WLDGL AAKRAL V+ Sbjct 902 SAQLQHLTPERAARDAEGVADLLRLLGPLTEADIAQRCTADNIGAWLDGLHAAKRALPVT 961 Query 967 FAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAAAA 1026 +AG++WW AVED+G LRDG+G VPVG+PA+FTE+ +DPLG+L+GRYART PFTT A Sbjct 962 YAGQTWWAAVEDIGLLRDGIGVPVPVGVPAAFTESASDPLGDLIGRYARTRGPFTTEQTA 1021 Query 1027 ARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRSLAALRA 1086 ARFGLG+RV +DVL R+A DGRL+RGEF A GEQWCDA+VL+ILRRRSLAALRA Sbjct 1022 ARFGLGVRVASDVLSRMAVDGRLIRGEFAA----DLSGEQWCDAQVLKILRRRSLAALRA 1077 Query 1087 QAEPVSTAAYGRFLPAWQHVSAGN-SGIDGLAAVIDQLAGVRIPASAIEPLVLAPRIRDY 1145 Q EPVST AY RFLP+WQHV + N +GIDGLA VI+QLAGV IPASA+E LV R+RDY Sbjct 1078 QVEPVSTDAYARFLPSWQHVGSTNTTGIDGLATVIEQLAGVPIPASAVESLVFPQRVRDY 1137 Query 1146 SPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRAILASL 1205 PAMLDELLASG+V WSGAG I DGW+A H AD+AP+TL AEI+FTD HR IL +L Sbjct 1138 QPAMLDELLASGEVMWSGAGQIGNGDGWVAFHLADTAPLTLTHGAEIEFTDTHRVILETL 1197 Query 1206 GTGGAYFFRQLTHDGLTEA----ELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRAA 1261 G GGAYFFRQLT DG E ELK ALWELIWAG VTGDTFAPVRAVL +G R+ A Sbjct 1198 GHGGAYFFRQLT-DGTVEGTAGQELKQALWELIWAGWVTGDTFAPVRAVL--SGPRRSGA 1254 Query 1262 PAH-GGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV 1320 PAH RPPRLSRY + HAQ R DPTV+GRWSALP EPDST+RAH+QAELLL RHGV Sbjct 1255 PAHRQRQRPPRLSRYSVAHAQTRGTDPTVSGRWSALPAAEPDSTVRAHFQAELLLGRHGV 1314 Query 1321 LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG 1380 LTK AV AEGV GGFATLYKVLS FEDAGRCQRGYF+ESLGGAQFAVASTVDRLRSYLD Sbjct 1315 LTKGAVGAEGVPGGFATLYKVLSTFEDAGRCQRGYFVESLGGAQFAVASTVDRLRSYLDN 1374 Query 1381 VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER 1440 VDPE+P+YHAVVLAA DPANPYGAAL WP S RPGRKAGALV LVDG L WFLER Sbjct 1375 VDPERPEYHAVVLAATDPANPYGAALGWPTDSE--AHRPGRKAGALVALVDGRLVWFLER 1432 Query 1441 GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALT--AL 1498 GGRSLL+F D +A AAA L DLV+AGR+ S+LVER +G+ VL P A A+ AL Sbjct 1433 GGRSLLSFGADADAQRAAAGALTDLVSAGRIPSLLVERINGVAVLDPDVDAERAVVQDAL 1492 Query 1499 LAAGFVRTPRGLRRR 1513 L AG RTPRGLR R Sbjct 1493 LGAGLSRTPRGLRLR 1507 >gi|254776702|ref|ZP_05218218.1| DEAD/DEAH box helicase [Mycobacterium avium subsp. avium ATCC 25291] Length=1524 Score = 2243 bits (5813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1160/1399 (83%), Positives = 1254/1399 (90%), Gaps = 30/1399 (2%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L RFSA+TR+WFTSTFAAPT AQA AW+AIADG NTLVIAPTGSGKTLAAFLWALDSLAG Sbjct 13 LGRFSAITREWFTSTFAAPTTAQAQAWSAIADGHNTLVIAPTGSGKTLAAFLWALDSLAG 72 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 +ER TRVLYVSPLKALAVDVERNLRTPLAGLTR+ ER GLPAP I VGVRSGDT Sbjct 73 ---QAERAPGTRVLYVSPLKALAVDVERNLRTPLAGLTRITERAGLPAPDISVGVRSGDT 129 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 PPA+RRQL+++PPDVLITTPESLFLMLTSAAR+TL GVQTVI+DEIHAIA KRGAHLAL Sbjct 130 PPAVRRQLINRPPDVLITTPESLFLMLTSAARETLAGVQTVIVDEIHAIAGGKRGAHLAL 189 Query 189 SLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSP---TTIVAPPAAKTVELSVQVP 245 SLERLD L R AQRIGLSATVRPPEELARFLSG +P TT+VAPP+AKTVELSVQVP Sbjct 190 SLERLDALREGRPAQRIGLSATVRPPEELARFLSGTAPGTRTTVVAPPSAKTVELSVQVP 249 Query 246 VPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELA 305 VPDMANL +NTIWPDVE RLVDLIE+H STIVFANSRRLAERLTARLNEIHA R G+EL+ Sbjct 250 VPDMANLANNTIWPDVENRLVDLIEAHGSTIVFANSRRLAERLTARLNEIHAERSGVELS 309 Query 306 PDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATS 365 N +VAGGAPAHIM SGQT+G P+LARAHHGS+SKEQRA+VEEDLKRG LKAVVATS Sbjct 310 ATANPKVAGGAPAHIMASGQTYGVEPILARAHHGSVSKEQRALVEEDLKRGLLKAVVATS 369 Query 366 SLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSV 425 SLELGIDMGAVDLVIQV+APPSVASGLQRIGRAGHQVGE+SRGVLFPKHRTDL+GCAV+V Sbjct 370 SLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEVSRGVLFPKHRTDLIGCAVTV 429 Query 426 QRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEAT 485 QRMLAG+IETMRVPANPLDILAQ TVAAAALEPLDAD WFDTVRRAAPFATLPRS++EAT Sbjct 430 QRMLAGQIETMRVPANPLDILAQQTVAAAALEPLDADRWFDTVRRAAPFATLPRSIYEAT 489 Query 486 LDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLAT-- 543 LDLLSGKYPSTEFAELRPRLVYDR+TGTLTARPGAQRLAVTSGGAIPDRGLF VYLA+ Sbjct 490 LDLLSGKYPSTEFAELRPRLVYDRNTGTLTARPGAQRLAVTSGGAIPDRGLFTVYLASEA 549 Query 544 ERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDA 603 E+PSRVGEL+EEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGD Sbjct 550 EKPSRVGELEEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDGV 609 Query 604 GRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDS 663 GRPAELGAALGA TGELA L R F +RCA LGFD YA DNL+ L D+QRTA VVPTD+ Sbjct 610 GRPAELGAALGAFTGELAGLSREEFDSRCAALGFDAYAVDNLYGLFDEQRTAAGVVPTDT 669 Query 664 TLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLP 723 TLLVERFRDELGDWRVILHSPYGL V+GPLALAVGRRLR+RYGIDEKPTASD+G+VVRLP Sbjct 670 TLLVERFRDELGDWRVILHSPYGLGVNGPLALAVGRRLRERYGIDEKPTASDDGVVVRLP 729 Query 724 DTV----SAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHP 779 DTV S G D+PPGAELFVFDADEIDPIVT EV GSALFASRFRE AARALLLPRRHP Sbjct 730 DTVSDFASDGGDTPPGAELFVFDADEIDPIVTAEVGGSALFASRFRECAARALLLPRRHP 789 Query 780 GRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRV 839 GRRSPLWQQRQRAA+LLEVARKYPDFP+VLETVRECLQDVYDVP LV LMA IAQRRVRV Sbjct 790 GRRSPLWQQRQRAAQLLEVARKYPDFPVVLETVRECLQDVYDVPALVALMAGIAQRRVRV 849 Query 840 AEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLD 899 E ET +PSPFAASLLFGYVGAFMYEGD+PLAERRAAAL+LD TLLAELLGRVELRELLD Sbjct 850 LEVETQRPSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDSTLLAELLGRVELRELLD 909 Query 900 PDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAG---APEVSGWLDGL 956 P+V+AAT+R LQHLA +R ARDAE VADLLRLLGPLTEDE+ ARAG A EV GWL+GL Sbjct 910 PEVVAATARALQHLAPERAARDAEAVADLLRLLGPLTEDEVVARAGGADAVEVRGWLEGL 969 Query 957 RAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYART 1016 RAA+RA+ VSFAGRSWWVA+ED+GRLRDG+G AVP+G+PA+FTE VADPLGELLGRYART Sbjct 970 RAARRAVPVSFAGRSWWVAIEDIGRLRDGLGIAVPLGVPAAFTEEVADPLGELLGRYART 1029 Query 1017 HTPFTTAAAAARFGLGLRVTADVLGRLA----SDGRLVRGEFVAAAKGSAGG----EQWC 1068 HTPF+TA AAARFGLGLRVTADVLGRLA S GRLVRG+FVAA GG EQWC Sbjct 1030 HTPFSTAEAAARFGLGLRVTADVLGRLADPSTSQGRLVRGDFVAARPSEPGGVLGAEQWC 1089 Query 1069 DAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSA-------GNSGIDGLAAVID 1121 DA+VLRILRRRSLAALRAQ EPVSTAAYGRFLPAW V A G+SG+DGL +VI+ Sbjct 1090 DADVLRILRRRSLAALRAQVEPVSTAAYGRFLPAWHRVGAAESSRAPGHSGLDGLMSVIE 1149 Query 1122 QLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADS 1181 QLAGVR+PASA+EPLVLAPR+RDYSPA+LDELLA+G+VTWSGAGSISGSDGWIALHP++S Sbjct 1150 QLAGVRLPASALEPLVLAPRVRDYSPALLDELLATGEVTWSGAGSISGSDGWIALHPSES 1209 Query 1182 APMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTG 1241 AP+TL PA+I+ +AHRAIL L GG YFFRQL DG+++AELKAALWEL+WAG +TG Sbjct 1210 APLTLQGPADIELGEAHRAILDVLAGGGGYFFRQLATDGVSDAELKAALWELVWAGWITG 1269 Query 1242 DTFAPVRAVLGGAGTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEP 1301 DTFAPVRA+LGG GTR+R+APAH RPPRLSRY + H QAR AD TVAGRWS LP PEP Sbjct 1270 DTFAPVRALLGGGGTRRRSAPAHRAQRPPRLSRYSVAHPQARPADTTVAGRWSVLPPPEP 1329 Query 1302 DSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLG 1361 DST+RAH+QAELLL RHGVLT+ AVAAEGVAGGFATLYKVLS FEDAGRCQRGYFIESLG Sbjct 1330 DSTVRAHFQAELLLGRHGVLTRGAVAAEGVAGGFATLYKVLSTFEDAGRCQRGYFIESLG 1389 Query 1362 GAQFAVASTVDRLRSYLDG 1380 GAQFAVASTVDRLR + DG Sbjct 1390 GAQFAVASTVDRLRGFADG 1408 >gi|120402638|ref|YP_952467.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119955456|gb|ABM12461.1| ATP dependent helicase, Lhr family [Mycobacterium vanbaalenii PYR-1] Length=1514 Score = 2226 bits (5769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1150/1517 (76%), Positives = 1295/1517 (86%), Gaps = 25/1517 (1%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L+RFSALTR+WFT TF PT AQA AW AIADGDNTLVIAPTGSGKTLAAFLWA+D LA Sbjct 11 LARFSALTREWFTGTFVKPTPAQAQAWNAIADGDNTLVIAPTGSGKTLAAFLWAIDGLA- 69 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 EP ++R TRVLYVSPLKALAVDVERNLRTPL G++R+AER G P I VGVRSGDT Sbjct 70 REPAAQR--GTRVLYVSPLKALAVDVERNLRTPLTGISRIAERTGQQPPAISVGVRSGDT 127 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 P+ RR+L+++PPD+LITTPESLFLMLTSAAR+TL+ VQTVI+DE+HA+A TKRGAHLA+ Sbjct 128 TPSKRRELITKPPDILITTPESLFLMLTSAARETLSQVQTVIVDEVHAVAGTKRGAHLAV 187 Query 189 SLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVPD 248 SLERLD + + AQRIGLSATVRPPEE+ARFLSG +PTTIVAPPAAKT +L+VQVPVPD Sbjct 188 SLERLDAMLPKP-AQRIGLSATVRPPEEVARFLSGAAPTTIVAPPAAKTFDLTVQVPVPD 246 Query 249 MANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELAPDT 308 MANL +N+IWP+VE R+VDL+E+HNS+IVFANSRRLAERLTARLNEIHA R G+EL Sbjct 247 MANLENNSIWPEVEQRIVDLVEAHNSSIVFANSRRLAERLTARLNEIHAERLGVELG-GA 305 Query 309 NQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLE 368 N VAGGAPAH+MGSGQT+GA P+LARAHHGS+SKE RA VEE LK G+LKAVVATSSLE Sbjct 306 NPGVAGGAPAHLMGSGQTYGAEPLLARAHHGSVSKEARADVEEALKSGRLKAVVATSSLE 365 Query 369 LGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRM 428 LGIDMGAVDLVIQV+ PPSVASGLQRIGRAGHQVGEIS+GVLFPKHRTDL+GCAVSVQRM Sbjct 366 LGIDMGAVDLVIQVETPPSVASGLQRIGRAGHQVGEISQGVLFPKHRTDLIGCAVSVQRM 425 Query 429 LAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDL 488 LAG+IETMRVPANPLD+LAQHTVAA ALEP++A+AWFDTVRR+APFATLPRS FEATLDL Sbjct 426 LAGQIETMRVPANPLDVLAQHTVAACALEPINAEAWFDTVRRSAPFATLPRSAFEATLDL 485 Query 489 LSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLAT----E 544 LSGKYPSTEFAELRPR+VYDRDTGTLT+RPGAQRLAVTSGGAIPDRGLF V+LA+ E Sbjct 486 LSGKYPSTEFAELRPRIVYDRDTGTLTSRPGAQRLAVTSGGAIPDRGLFTVFLASSADSE 545 Query 545 RPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDAG 604 +PSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPG+PARLPFWRGD G Sbjct 546 KPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGEPARLPFWRGDGVG 605 Query 605 RPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDST 664 RPAELGAA+GA TGELA LDR AF +RC +GFD +ATDNLW+L+ +QR AT+ VP+D+T Sbjct 606 RPAELGAAIGAFTGELARLDRDAFESRCQEVGFDAFATDNLWQLISEQRDATSAVPSDTT 665 Query 665 LLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPD 724 L+VERFRDELGDWRVILHSPYGLRVHGPLALAVG+RL +RYGIDEKPTASD+GI+VRLPD Sbjct 666 LVVERFRDELGDWRVILHSPYGLRVHGPLALAVGKRLYERYGIDEKPTASDDGIIVRLPD 725 Query 725 TVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSP 784 T +D+ PGA++FVFDADEI+P+VT EV+ SALFASRFRE AARALLLPRRHPG+RSP Sbjct 726 T----DDTAPGADIFVFDADEIEPLVTAEVSSSALFASRFRECAARALLLPRRHPGKRSP 781 Query 785 LWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEAET 844 LW QRQRAA+LL+VA+ YPDFPIVLE VRECLQDVYDVP L LM RIAQRRVR+ E ET Sbjct 782 LWHQRQRAAQLLDVAKGYPDFPIVLEAVRECLQDVYDVPTLTALMGRIAQRRVRLLEVET 841 Query 845 AKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDVIA 904 PSPFAASLLFGYVGAFMYEGD+PLAERRAAAL+LD TLLAELLGRVELRELLD DV+ Sbjct 842 PTPSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDPTLLAELLGRVELRELLDADVVT 901 Query 905 ATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAKRALV 964 T+RQLQHL +R+ARDAEGVADLLRLLGPLT +EIAAR EV GWL+GL AKRA+ Sbjct 902 TTARQLQHLTPERLARDAEGVADLLRLLGPLTTEEIAARCVVSEVGGWLEGLLGAKRAVQ 961 Query 965 VSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAA 1024 VSFAG+SWW AVED+GRLRDGVG AVPVG+P +F E V DPLGELL RYART PFTTA Sbjct 962 VSFAGQSWWAAVEDIGRLRDGVGVAVPVGVPMAFLEQVVDPLGELLSRYARTRGPFTTAE 1021 Query 1025 AAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRSLAAL 1084 AAARFGLGLRV ADVLGRLA DG+LVRGEF A S G QWCDAEVLRILRRRSLAAL Sbjct 1022 AAARFGLGLRVAADVLGRLAVDGKLVRGEFTDAPTDSGG--QWCDAEVLRILRRRSLAAL 1079 Query 1085 RAQAEPVSTAAYGRFLPAWQHVSA-GNSGIDGLAAVIDQLAGVRIPASAIEPLVLAPRIR 1143 RAQ EPVSTAA+GRFLPAWQ + SG+DGLAAVIDQLAGV +PASA+EPL+ R+R Sbjct 1080 RAQIEPVSTAAFGRFLPAWQMLGGDAVSGVDGLAAVIDQLAGVPMPASAVEPLIFGQRVR 1139 Query 1144 DYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRAILA 1203 DY P MLDELLASG+V WSG GS+S +DGW+A H A++AP++LA ++ TD H A+LA Sbjct 1140 DYQPGMLDELLASGEVLWSGVGSLSTADGWVAFHLAETAPLSLAPYGDLGLTDIHHAVLA 1199 Query 1204 SLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGA---GTRKRA 1260 +L GGAYFFRQLT DG+ LK ALW+LIWAG V GDTFAPVRA+L GA G RK A Sbjct 1200 ALAGGGAYFFRQLTVDGVGTESLKEALWQLIWAGYVGGDTFAPVRALLAGARGSGPRKSA 1259 Query 1261 APAHGGHRPPRLSRYRLTHAQ---ARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNR 1317 P+H R PRLSRY L+ + R++DPTVAGRWSALP+ E D+T+RAHYQA+ LL R Sbjct 1260 TPSHRHRRAPRLSRYSLSTSSLSAHRDSDPTVAGRWSALPVAEVDTTVRAHYQADQLLAR 1319 Query 1318 HGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSY 1377 HGVLTK AVA E + GGFA++YKVL+ E+AGRCQRGYF+ESLGGAQFA ASTVDRLRS+ Sbjct 1320 HGVLTKGAVAGENIPGGFASMYKVLTTMEEAGRCQRGYFVESLGGAQFATASTVDRLRSH 1379 Query 1378 LDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTA-RPGRKAGALVVLVDGELAW 1436 D +D +Q AV LAA DPANPYGAALPWP+ + +A RPGRKAGALVVLVDG LAW Sbjct 1380 ADSIDDQQHTLRAVALAATDPANPYGAALPWPSRGGEDSAHRPGRKAGALVVLVDGALAW 1439 Query 1437 FLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALT 1496 F+ERGGRSLL+FT D E HAAA LA+LV+ RV +LVER DG PVL+ R SA Sbjct 1440 FVERGGRSLLSFTADAETCHAAAASLAELVSRQRVPGLLVERIDGAPVLE--ARDSAVAE 1497 Query 1497 ALLAAGFVRTPRGLRRR 1513 AL+ AGF RTPRGLR R Sbjct 1498 ALVQAGFARTPRGLRLR 1514 >gi|315445736|ref|YP_004078615.1| ATP dependent helicase, Lhr family [Mycobacterium sp. Spyr1] gi|315264039|gb|ADU00781.1| ATP dependent helicase, Lhr family [Mycobacterium sp. Spyr1] Length=1518 Score = 2205 bits (5714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1146/1527 (76%), Positives = 1300/1527 (86%), Gaps = 28/1527 (1%) Query 4 AQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWAL 63 A+ LSRFS LTR+WF TF PT AQA AW AI+ G+NTLVIAPTGSGKTLAAFLWA+ Sbjct 3 AKTDPLSRFSTLTREWFAGTFVEPTPAQAQAWNAISAGENTLVIAPTGSGKTLAAFLWAI 62 Query 64 DSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGV 123 D LA EP +ER TRVLYVSPLKALAVDVERNLRTPL G++R+AER G P I VGV Sbjct 63 DGLA-REPRAER--GTRVLYVSPLKALAVDVERNLRTPLTGISRIAERNGEEPPAISVGV 119 Query 124 RSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRG 183 RSGDT P+ RR+L+++PPD+LITTPESLFLMLTSAAR++L ++TVI+DE+HA+AATKRG Sbjct 120 RSGDTTPSKRRELITKPPDILITTPESLFLMLTSAARESLADIETVIVDEVHAVAATKRG 179 Query 184 AHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQ 243 AHLA+SLERLD + + AQRIGLSATVRPPEE+ARFLSG SPTTIVAPPAAKT +L+VQ Sbjct 180 AHLAVSLERLDAMLPKP-AQRIGLSATVRPPEEVARFLSGASPTTIVAPPAAKTFDLTVQ 238 Query 244 VPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIE 303 VPVPDMANL +N+IWPDVE R+VDLIE+HNS+IVF NSRRLAERLTAR+NEIHA R GIE Sbjct 239 VPVPDMANLENNSIWPDVEERIVDLIEAHNSSIVFTNSRRLAERLTARINEIHAERTGIE 298 Query 304 LAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVA 363 L N VAGGAPAH+MGSGQT+GA PVLARAHHGS+SKE RA VE+ LK G+LKAVVA Sbjct 299 LGAH-NPGVAGGAPAHLMGSGQTYGAEPVLARAHHGSVSKEARADVEDALKSGRLKAVVA 357 Query 364 TSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAV 423 TSSLELGIDMGAVDLVIQV+ PPSVASGLQR+GRAGHQVGEIS+GVLFPKHRTDL+GCAV Sbjct 358 TSSLELGIDMGAVDLVIQVETPPSVASGLQRVGRAGHQVGEISQGVLFPKHRTDLIGCAV 417 Query 424 SVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFE 483 SVQRMLAG+IETMRVPANPLD+LAQHTVAA+ALEP++ADAWFDTVRR+APFATLPRS FE Sbjct 418 SVQRMLAGQIETMRVPANPLDVLAQHTVAASALEPINADAWFDTVRRSAPFATLPRSAFE 477 Query 484 ATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLAT 543 ATLDLLSGKYPSTEFAELRPR+VYDRD G LT+RPGAQRLAVTSGGAIPDRG+F V+LA+ Sbjct 478 ATLDLLSGKYPSTEFAELRPRIVYDRDNGMLTSRPGAQRLAVTSGGAIPDRGMFTVFLAS 537 Query 544 ----ERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWR 599 E+PSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPG+PARLPFWR Sbjct 538 SAESEKPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGEPARLPFWR 597 Query 600 GDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVV 659 GD GRP ELGAA+GA GELA LDR AF +RC +GFDD+ATDNLW+L+ +QR AT+ V Sbjct 598 GDGVGRPVELGAAIGAFNGELARLDRPAFESRCRDVGFDDFATDNLWQLISEQREATSSV 657 Query 660 PTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIV 719 P+D+TL+VERFRDELGDWRVILHSPYGLRVHGPLALAVG+RL +R+GIDEKPTASD+GI+ Sbjct 658 PSDTTLVVERFRDELGDWRVILHSPYGLRVHGPLALAVGKRLYERFGIDEKPTASDDGII 717 Query 720 VRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHP 779 VRLPDT +D+ PGA++FVFDADEI+P+VTTEV+GSALFASRFRE AARALLLPRRHP Sbjct 718 VRLPDT----DDTAPGADIFVFDADEIEPLVTTEVSGSALFASRFRECAARALLLPRRHP 773 Query 780 GRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRV 839 G+RSPLW QRQRAA+LL+VAR YPDFPIVLE VRECLQDVYDVP L LM RIAQRRVR+ Sbjct 774 GKRSPLWHQRQRAAQLLDVARNYPDFPIVLEAVRECLQDVYDVPALTALMDRIAQRRVRI 833 Query 840 AEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLD 899 E ET PSPFAASLLFGYVGAFMYEGD+PLAERRAAALALD TLLAELLGRVELRELLD Sbjct 834 LEVETPTPSPFAASLLFGYVGAFMYEGDSPLAERRAAALALDPTLLAELLGRVELRELLD 893 Query 900 PDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAA 959 PDVIA T+RQLQHL +R ARDAEGVADLLRLLGPLT DEIA R P++ GWL+GL + Sbjct 894 PDVIANTTRQLQHLTPERAARDAEGVADLLRLLGPLTVDEIAERCVQPDIGGWLEGLLTS 953 Query 960 KRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTP 1019 KR + +SFAG++WW A+ED+GRLRDGVG AVPVG+P +F E + DPLGELL RYART P Sbjct 954 KRVVTLSFAGQTWWAAIEDIGRLRDGVGVAVPVGVPIAFLEPIVDPLGELLSRYARTRGP 1013 Query 1020 FTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRR 1079 F T AA RFGLG+RV ADVLGRL +DG+LVRGEF S G EQWCDAEVLRILRRR Sbjct 1014 FNTMEAATRFGLGVRVAADVLGRLTADGKLVRGEFTDLPADSGGAEQWCDAEVLRILRRR 1073 Query 1080 SLAALRAQAEPVSTAAYGRFLPAWQHVSAGN-SGIDGLAAVIDQLAGVRIPASAIEPLVL 1138 SLAALRAQ EPVST A+GRFLPAWQ V A + SG+DGLA+VIDQLAGV IPASA+EPL+L Sbjct 1074 SLAALRAQIEPVSTGAFGRFLPAWQMVGADSASGVDGLASVIDQLAGVPIPASAVEPLIL 1133 Query 1139 APRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAH 1198 R+RDY P MLDELLASG+V WSGAGS+S +DGW++ HPAD+AP++LA P ++D TD H Sbjct 1134 GQRVRDYQPGMLDELLASGEVLWSGAGSLSAADGWVSFHPADTAPLSLAPPGDLDLTDVH 1193 Query 1199 RAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGA---G 1255 ILA+L GGAYFFRQLT DG++ LK ALW+LIWAG V GDTFAPVRA+L G G Sbjct 1194 HQILAALAGGGAYFFRQLTLDGVSSESLKEALWQLIWAGYVGGDTFAPVRALLAGTKGPG 1253 Query 1256 TRKRAAPAHGGHRPPRLSRYRLTHAQ---ARNADPTVAGRWSALPLPEPDSTLRAHYQAE 1312 +R+ AAP+H RPPRLSRY L+ + R++DPTVAGRWSALP E D+T+RAHYQA+ Sbjct 1254 SRRAAAPSHRHRRPPRLSRYSLSTSSLSAHRDSDPTVAGRWSALPTAEVDTTVRAHYQAD 1313 Query 1313 LLLNRHGVLTKDAVAAE----GVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVA 1368 LL RHGVLTK AVA+E + GGFA +YKVL+ EDAGRCQRGYF+ESLGGAQFA A Sbjct 1314 QLLARHGVLTKGAVASENFRGNIPGGFAAMYKVLTTMEDAGRCQRGYFVESLGGAQFATA 1373 Query 1369 STVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTA--RPGRKAGAL 1426 STVDRLRS+ D +D +Q AV LAA DPANPYGAALPWP+ ADG RPGRKAGAL Sbjct 1374 STVDRLRSHADSIDDQQQKLRAVALAATDPANPYGAALPWPSRGADGDTAHRPGRKAGAL 1433 Query 1427 VVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQ 1486 VVL+DGEL WF+ERGGRSLL+FTDD E +AAA LA+LVT RV ++LVER DG+PVL+ Sbjct 1434 VVLIDGELTWFVERGGRSLLSFTDDAETANAAAAALAELVTRHRVPALLVERIDGVPVLE 1493 Query 1487 PGGRASAALTALLAAGFVRTPRGLRRR 1513 R S + AL+ AGF RTPRGLR R Sbjct 1494 --SRESVMVEALILAGFSRTPRGLRLR 1518 >gi|145225388|ref|YP_001136066.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145217874|gb|ABP47278.1| ATP dependent helicase, Lhr family [Mycobacterium gilvum PYR-GCK] Length=1517 Score = 2185 bits (5663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1139/1527 (75%), Positives = 1296/1527 (85%), Gaps = 29/1527 (1%) Query 4 AQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWAL 63 A+ LSRFS LTR+WF TF PT AQA AW AI+ G+NTLVIAPTGSGKTLAAFLWA+ Sbjct 3 AKTDPLSRFSTLTREWFAGTFVEPTPAQAQAWNAISAGENTLVIAPTGSGKTLAAFLWAI 62 Query 64 DSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGV 123 D LA EP +ER TRVLYVSPLKALAVDVERNLRTPL G++R+AER G P I VGV Sbjct 63 DGLA-REPRAER--GTRVLYVSPLKALAVDVERNLRTPLTGISRIAERNGEEPPAISVGV 119 Query 124 RSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRG 183 RSGDT P+ RR+L+++PPD+LITTPESLFLMLTSAAR++L+ ++TVI+DE+HA+AATKRG Sbjct 120 RSGDTTPSKRRELITKPPDILITTPESLFLMLTSAARESLSDIETVIVDEVHAVAATKRG 179 Query 184 AHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQ 243 AHLA+SLERLD + + AQRIGLSATVRPPEE+ARFLSG SPTTIVAPPAAKT +L+VQ Sbjct 180 AHLAVSLERLDAMLPKP-AQRIGLSATVRPPEEVARFLSGASPTTIVAPPAAKTFDLTVQ 238 Query 244 VPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIE 303 VPVPDMA +IWPDVE R+VDLIE+HNS+IVF NSRRLAERLTAR+NEIHA R GIE Sbjct 239 VPVPDMAAPNTGSIWPDVEERIVDLIEAHNSSIVFTNSRRLAERLTARINEIHAERTGIE 298 Query 304 LAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVA 363 L N VAGGAPAH+MGSGQT+GA PVLARAHHGS+SKE RA VE+ LK G+LKAVVA Sbjct 299 LGAH-NPGVAGGAPAHLMGSGQTYGAEPVLARAHHGSVSKEARADVEDALKSGRLKAVVA 357 Query 364 TSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAV 423 TSSLELGIDMGAVDLVIQV+ PPSVASGLQR+GRAGHQVGEIS+GVLFPKHRTDL+GCAV Sbjct 358 TSSLELGIDMGAVDLVIQVETPPSVASGLQRVGRAGHQVGEISQGVLFPKHRTDLIGCAV 417 Query 424 SVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFE 483 SVQRMLAG+IETMRVPANPLD+LAQHTVAA+ALEP++ADAWFDTVRR+APFATLPRS FE Sbjct 418 SVQRMLAGQIETMRVPANPLDVLAQHTVAASALEPINADAWFDTVRRSAPFATLPRSAFE 477 Query 484 ATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLAT 543 ATLDLLSGKYPSTEFAELRPR+VYDRD G LT+RPGAQRLAVTSGGAIPDRG+F V+LA+ Sbjct 478 ATLDLLSGKYPSTEFAELRPRIVYDRDNGMLTSRPGAQRLAVTSGGAIPDRGMFTVFLAS 537 Query 544 ----ERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWR 599 E+PSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPG+PARLPFWR Sbjct 538 SAESEKPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGEPARLPFWR 597 Query 600 GDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVV 659 GD GRP ELGAA+GA GELA LDR AF +RC +GFDD+ATDNLW+L+ +QR AT+ V Sbjct 598 GDGVGRPVELGAAIGAFNGELARLDRPAFESRCRDVGFDDFATDNLWQLISEQREATSSV 657 Query 660 PTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIV 719 P+D+TL+VERFRDELGDWRVILHSPYGLRVHGPLALAVG+RL +R+GIDEKPTASD+GI+ Sbjct 658 PSDTTLVVERFRDELGDWRVILHSPYGLRVHGPLALAVGKRLYERFGIDEKPTASDDGII 717 Query 720 VRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHP 779 VRLPDT +D+ PGA++FVFDADEI+P+VTTEV+ SALFASRFRE AARALLLPRRHP Sbjct 718 VRLPDT----DDTAPGADIFVFDADEIEPLVTTEVSSSALFASRFRECAARALLLPRRHP 773 Query 780 GRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRV 839 G+RSPLW QRQRAA+LL+VAR YPDFPIVLE VRECLQDVYDVP L LM RIAQRRVR+ Sbjct 774 GKRSPLWHQRQRAAQLLDVARNYPDFPIVLEAVRECLQDVYDVPALTALMDRIAQRRVRI 833 Query 840 AEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLD 899 E ET PSPFAASLLFGYVGAFMYEGD+PLAERRAAALALD TLLAELLGRVELRELLD Sbjct 834 LEVETPTPSPFAASLLFGYVGAFMYEGDSPLAERRAAALALDPTLLAELLGRVELRELLD 893 Query 900 PDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAA 959 PDVIA T+RQLQHL +R ARDAEGVADLLRLLGPLT DEIA R P++ GWL+GL + Sbjct 894 PDVIATTTRQLQHLTPERAARDAEGVADLLRLLGPLTVDEIAERCVQPDIGGWLEGLLTS 953 Query 960 KRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTP 1019 KR + +SFAG++WW A+ED+GRLRDGVG AVPVG+P +F E + DPL ELL RYART P Sbjct 954 KRVVTLSFAGQTWWAAIEDIGRLRDGVGVAVPVGVPIAFLEPIVDPLSELLSRYARTRGP 1013 Query 1020 FTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRR 1079 FTT AA RFGLG+RV ADVLGRL +DG+LVRGEF S G EQWCDAEVLRILRRR Sbjct 1014 FTTMEAATRFGLGVRVAADVLGRLTADGKLVRGEFTDLPTES-GVEQWCDAEVLRILRRR 1072 Query 1080 SLAALRAQAEPVSTAAYGRFLPAWQHVSAGN-SGIDGLAAVIDQLAGVRIPASAIEPLVL 1138 SLAALRAQ EPVST A+GRFLPAWQ V A + SG+DGLA+VIDQLAGV +PASA+EPL+L Sbjct 1073 SLAALRAQIEPVSTGAFGRFLPAWQMVGADSASGVDGLASVIDQLAGVPVPASAVEPLIL 1132 Query 1139 APRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAH 1198 R+RDY P MLDELLASG+V WSGAGS+S +DGW++ HPAD+AP++LA P ++D TD H Sbjct 1133 GQRVRDYQPGMLDELLASGEVLWSGAGSLSAADGWVSFHPADTAPLSLAPPGDLDLTDVH 1192 Query 1199 RAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGA---G 1255 ILA+L GGAYFFRQL+ DG++ LK ALW+LIWAG V GDTFAPVRA+L G G Sbjct 1193 HQILAALAGGGAYFFRQLSLDGVSSESLKEALWQLIWAGYVGGDTFAPVRALLAGTKGPG 1252 Query 1256 TRKRAAPAHGGHRPPRLSRYRLTHAQ---ARNADPTVAGRWSALPLPEPDSTLRAHYQAE 1312 +R+ AAP+H RPPRLSRY L+ + R++DPTVAGRWSALP E D+T+RAHYQA+ Sbjct 1253 SRRTAAPSHRHRRPPRLSRYSLSTSSLSAHRDSDPTVAGRWSALPTAEVDTTVRAHYQAD 1312 Query 1313 LLLNRHGVLTKDAVAAE----GVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVA 1368 LL RHGVLTK AVA+E + GGFA++YKVL+ EDAGRCQRGYF+ESLGGAQFA A Sbjct 1313 QLLARHGVLTKGAVASENFRGNIPGGFASMYKVLTTMEDAGRCQRGYFVESLGGAQFATA 1372 Query 1369 STVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTA--RPGRKAGAL 1426 STVDRLRS+ D +D +Q AV LAA DPANPYGAALPWP+ DG RPGRKAGAL Sbjct 1373 STVDRLRSHADSIDDQQQKLRAVTLAATDPANPYGAALPWPSRGTDGDTAHRPGRKAGAL 1432 Query 1427 VVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQ 1486 VVL+DGEL WF+ERGGRSLL+FTDD E +AAA LA+LVT RV ++LVER DG+PVL+ Sbjct 1433 VVLIDGELTWFVERGGRSLLSFTDDAETANAAAAALAELVTRHRVPALLVERIDGVPVLE 1492 Query 1487 PGGRASAALTALLAAGFVRTPRGLRRR 1513 R S + AL+ AGF RTPRGLR R Sbjct 1493 --SRESVMVEALILAGFSRTPRGLRLR 1517 >gi|333991755|ref|YP_004524369.1| ATP-dependent helicase Lhr [Mycobacterium sp. JDM601] gi|333487723|gb|AEF37115.1| ATP-dependent helicase Lhr [Mycobacterium sp. JDM601] Length=1509 Score = 2176 bits (5638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1169/1524 (77%), Positives = 1282/1524 (85%), Gaps = 36/1524 (2%) Query 6 PSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDS 65 P+AL+RFSALTRDWFT TFAAPT AQ AW+AIADG +TLV+APTGSGKTLAAFLWALD Sbjct 6 PAALARFSALTRDWFTGTFAAPTEAQQQAWSAIADGHHTLVVAPTGSGKTLAAFLWALDR 65 Query 66 LAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLA---ERQGLPAPQIRVG 122 LA +EP + A TRVLYVSPLKALAVDVERNLRTPLAG+ R+A + GLPAP I VG Sbjct 66 LA-AEP-GPKAAGTRVLYVSPLKALAVDVERNLRTPLAGIGRIAAHPDYAGLPAPAITVG 123 Query 123 VRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKR 182 VRSGDT A RR+LV+ PPD+LITTPESLFLMLTSAAR+ LTGVQTVI+DE+HA+A TKR Sbjct 124 VRSGDTSAARRRELVAHPPDILITTPESLFLMLTSAAREALTGVQTVIVDEVHAVAGTKR 183 Query 183 GAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSV 242 G+HLALSLERLD + + AQRIGLSATVRP EE+ARFLSGQ+PTTIVAPPAAKT EL+V Sbjct 184 GSHLALSLERLDAMLASP-AQRIGLSATVRPAEEVARFLSGQAPTTIVAPPAAKTFELTV 242 Query 243 QVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGI 302 QVPVPDMA+ + TIWP VE R+VDLIE+H S+IVFANSRRLAERLTARLNEIHA RC Sbjct 243 QVPVPDMASPAEGTIWPQVEERIVDLIEAHRSSIVFANSRRLAERLTARLNEIHAERC-- 300 Query 303 ELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVV 362 PD V + A +G+ AP LARAHHGS+SKE RA VEEDLK G+L+AVV Sbjct 301 ---PDDAAPVGIASAAEPGAAGRHSLAP--LARAHHGSVSKETRAAVEEDLKSGRLRAVV 355 Query 363 ATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCA 422 ATSSLELGIDMGAVDLVIQ++APPSVASGLQRIGRAGHQVGE+S GVL PKHRTDL+GCA Sbjct 356 ATSSLELGIDMGAVDLVIQIEAPPSVASGLQRIGRAGHQVGEVSAGVLIPKHRTDLIGCA 415 Query 423 VSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLF 482 VSVQRMLAG+IET+ VPANPLDILAQHTVAAAALEPLDA+AWFDTVRRAAPFATLPRS+F Sbjct 416 VSVQRMLAGQIETLTVPANPLDILAQHTVAAAALEPLDAEAWFDTVRRAAPFATLPRSVF 475 Query 483 EATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLA 542 EATLDLLSGKYPSTEFAELRPRLVYDRDTGTLT RPGAQRLAVTSGGAIPDRGLFAVYLA Sbjct 476 EATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTGRPGAQRLAVTSGGAIPDRGLFAVYLA 535 Query 543 -TERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGD 601 ++PSRVGELDEEMVYESRPGDVISLGATSWRITEI+HDRVLV+PAPGQP RLPFW GD Sbjct 536 GADKPSRVGELDEEMVYESRPGDVISLGATSWRITEISHDRVLVVPAPGQPGRLPFWHGD 595 Query 602 DAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPT 661 GRPAELGAALG TGELA LDR A RCAGLGFDDYA DNLWRLLDDQRTAT+ VPT Sbjct 596 GVGRPAELGAALGEFTGELAGLDRAALDKRCAGLGFDDYAADNLWRLLDDQRTATSTVPT 655 Query 662 DSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVR 721 D+TL+VERFRDELGDWRV+LHSPYGLRVHGPLALAVGRRL +RYGIDEKPTASD+GIVVR Sbjct 656 DTTLVVERFRDELGDWRVVLHSPYGLRVHGPLALAVGRRLHERYGIDEKPTASDDGIVVR 715 Query 722 LPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGR 781 LPDT + PGA+LFVFDADEI+PIVT EV GSALFASRFRE AARALLLPRRHPGR Sbjct 716 LPDTDAGATLDAPGADLFVFDADEIEPIVTAEVGGSALFASRFRECAARALLLPRRHPGR 775 Query 782 RSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAE 841 R+PLWQQRQRAA+LL+VAR+YP FPIVLETVRECLQDVYDVP L ELMARIAQRRVRV + Sbjct 776 RTPLWQQRQRAAQLLDVARRYPAFPIVLETVRECLQDVYDVPALTELMARIAQRRVRVVQ 835 Query 842 AETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPD 901 ETA PSPFAASLLFGYVGAFMYEGD+PLAERRAAAL+LD TLLA+LLGRVELRELLDPD Sbjct 836 VETATPSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDPTLLAQLLGRVELRELLDPD 895 Query 902 VIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAKR 961 V+AA + +LQHL ++ ARDAEGVADLLRLLGPLT DEIAARAG +V GWL+ L AA+R Sbjct 896 VVAAVAAELQHLTPEKAARDAEGVADLLRLLGPLTGDEIAARAGGSDVGGWLEHLLAARR 955 Query 962 ALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFT 1021 L V+FAGR+WWVA+ED+GRLRDG+G AVP G+PA FTE V DPLGELLGR+ARTH PFT Sbjct 956 VLTVAFAGRAWWVAIEDIGRLRDGIGVAVPPGVPAGFTEPVTDPLGELLGRFARTHGPFT 1015 Query 1022 TAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRSL 1081 T AA RFGLG RV AD LGRLA+DGR+VRGEF A + GEQWCDA+VLRILRRRSL Sbjct 1016 TGQAAERFGLGARVAADALGRLAADGRVVRGEF--ADFPDSPGEQWCDAQVLRILRRRSL 1073 Query 1082 AALRAQAEPVSTAAYGRFLPAWQH--VSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLA 1139 AALR+ EPVS AAY RFLPAWQ V SG+DGLA VI+QLAGV +PASA+EPLVLA Sbjct 1074 AALRSAIEPVSPAAYARFLPAWQQIGVRGAASGLDGLAGVIEQLAGVPLPASAVEPLVLA 1133 Query 1140 PRIRDYSPAMLDELLASGDVTW----SGAGSISGSDGWIALHPADSAPMTLAEPAEIDFT 1195 R+RDYSPAMLDELLASG+V W + AG+ +DGW+ H ADSAP+TLA A DF Sbjct 1134 ARVRDYSPAMLDELLASGEVLWAGAGAPAGNAPAADGWVTFHTADSAPLTLAPGAPFDFG 1193 Query 1196 DAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAG 1255 AHR IL +LG GGA+FFRQL D +EAELK ALWELIWAG VTGDTFAP+R VL AG Sbjct 1194 AAHRQILDTLGGGGAFFFRQLAGD-TSEAELKTALWELIWAGWVTGDTFAPMRTVL--AG 1250 Query 1256 TRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPD---STLRAHYQAE 1312 TR R+ PAH RPPRLSRY + HA R ADP VAGRWS LP EPD ST+RAH+ AE Sbjct 1251 TR-RSTPAHRSKRPPRLSRYSVAHAATRAADPAVAGRWSMLPATEPDPGFSTVRAHHTAE 1309 Query 1313 LLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVD 1372 LLL+R+GVLT+ AVAAE V GGFA LYKVL+AFE+AGRCQRGYFIESLG AQFA+ASTVD Sbjct 1310 LLLHRYGVLTRGAVAAEAVPGGFAGLYKVLTAFEEAGRCQRGYFIESLGAAQFALASTVD 1369 Query 1373 RLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDG 1432 RLR YLDGVDP +P+YHAV LAAADPANPYGAAL WPA GTARPGRKAGALVVLVDG Sbjct 1370 RLRGYLDGVDPARPEYHAVALAAADPANPYGAALSWPAHP--GTARPGRKAGALVVLVDG 1427 Query 1433 ELAWFLERGGRSLLTF---TDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGG 1489 EL WF+ERGGRSLL F D E AAA LA L+ RV ILVER DG VL+ Sbjct 1428 ELVWFVERGGRSLLNFATGADAAEVQRAAAGALAGLIADRRVDGILVERVDGAAVLET-- 1485 Query 1490 RASAALTALLAAGFVRTPRGLRRR 1513 R S TAL AGF RTPRGLR R Sbjct 1486 RDSPTTTALAEAGFSRTPRGLRLR 1509 >gi|254819535|ref|ZP_05224536.1| DEAD/DEAH box helicase [Mycobacterium intracellulare ATCC 13950] Length=1286 Score = 2090 bits (5414), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1064/1274 (84%), Positives = 1153/1274 (91%), Gaps = 21/1274 (1%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L RFSA+TR+WFT TF APT AQA AW AIADG +TLVIAPTGSGKTLAAFLWALDSLAG Sbjct 16 LGRFSAVTREWFTGTFDAPTTAQAEAWEAIADGHHTLVIAPTGSGKTLAAFLWALDSLAG 75 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 + + RP TRVLYVSPLKALAVDVERNLRTPLAGLTR+AER+GLP P I VGVRSGDT Sbjct 76 A---AGRPPGTRVLYVSPLKALAVDVERNLRTPLAGLTRIAERRGLPPPDISVGVRSGDT 132 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 PPA RRQL+++PPDVLITTPESLFLMLTSAAR+TL GVQTVI+DEIHAIAA KRGAHLA+ Sbjct 133 PPATRRQLINRPPDVLITTPESLFLMLTSAARETLAGVQTVIVDEIHAIAAGKRGAHLAV 192 Query 189 SLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVPD 248 SLERLD L + AQRIGLSATVRPPEELARFLSG PTTIVAP +AKTVEL+V VPVPD Sbjct 193 SLERLDALREDKPAQRIGLSATVRPPEELARFLSGGQPTTIVAPASAKTVELTVAVPVPD 252 Query 249 MANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELAPDT 308 MANL +NTIWPDVE RLVDLIE+HNSTIVFANSRRLAERLTARLNEIHA R G+EL+ + Sbjct 253 MANLANNTIWPDVENRLVDLIEAHNSTIVFANSRRLAERLTARLNEIHAERSGVELSTEA 312 Query 309 NQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLE 368 N +VAGGAPAHIMGSGQT+GA +LARAHHGS+SKEQRA+VEEDLKRG LKAVVATSSLE Sbjct 313 NPKVAGGAPAHIMGSGQTYGAEAILARAHHGSVSKEQRALVEEDLKRGLLKAVVATSSLE 372 Query 369 LGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRM 428 LGIDMGAVDLVIQV+APPSVASGLQRIGRAGHQVGE+S+GVLFPKHRTDL+GCAVSVQRM Sbjct 373 LGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEVSQGVLFPKHRTDLIGCAVSVQRM 432 Query 429 LAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDL 488 LAG+IETMRVPANPLDILAQ TVAAAALEPLDAD WFDTVRRAAPFATLPRS++EATLDL Sbjct 433 LAGQIETMRVPANPLDILAQQTVAAAALEPLDADKWFDTVRRAAPFATLPRSVYEATLDL 492 Query 489 LSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLAT--ERP 546 LSGKYPST+FAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLF VYLA+ E+P Sbjct 493 LSGKYPSTDFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFTVYLASEAEKP 552 Query 547 SRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDAGRP 606 SRVGEL+EEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGD GRP Sbjct 553 SRVGELEEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDGVGRP 612 Query 607 AELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDSTLL 666 AELGAALGA TGELA L R F TRCAGLGFD YATDNL RLLD+QRTA VVPTD+TLL Sbjct 613 AELGAALGAFTGELAGLTREEFETRCAGLGFDAYATDNLARLLDEQRTAAGVVPTDTTLL 672 Query 667 VERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPDTV 726 VERFRDELGDWRVILHSPYGL V+GPLALAVGRRLR+RYGIDEKPTASD+G+VVRLPDTV Sbjct 673 VERFRDELGDWRVILHSPYGLPVNGPLALAVGRRLRERYGIDEKPTASDDGVVVRLPDTV 732 Query 727 S-----AGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGR 781 S G ++PPGA+LFVFDADEIDPIVT EV GSALFASRFRE AARALLLPRRHPGR Sbjct 733 SDFASDTGIETPPGADLFVFDADEIDPIVTDEVGGSALFASRFRECAARALLLPRRHPGR 792 Query 782 RSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAE 841 RSPLWQQRQRAA+LLEVARKYPDFP+VLET+RECLQDVYDVP LV LM IAQRRVRV E Sbjct 793 RSPLWQQRQRAAQLLEVARKYPDFPVVLETIRECLQDVYDVPALVALMTGIAQRRVRVVE 852 Query 842 AETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPD 901 ETA+PSPFAASLLFGYVGAFMYEGD+PLAERRAAAL+LD TLLAELLGRVELR+LLDP+ Sbjct 853 VETARPSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDSTLLAELLGRVELRDLLDPE 912 Query 902 VIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAKR 961 VIAAT+RQLQHL+A+R ARDAEGVADLLRLLGPLTE+E+AARAG +V GWL+GLRAA+R Sbjct 913 VIAATARQLQHLSAERAARDAEGVADLLRLLGPLTEEEVAARAGGADVGGWLEGLRAARR 972 Query 962 ALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFT 1021 AL VSFAGR WWVA+ED+GRLRDG+G VP+G+P +FT VADPLGELLGRYARTHTPFT Sbjct 973 ALTVSFAGRGWWVAIEDIGRLRDGIGIPVPLGVPTAFTGEVADPLGELLGRYARTHTPFT 1032 Query 1022 TAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGG----EQWCDAEVLRILR 1077 TA AARFGLGLRVT+DVLGRLA+DGRLVRG+FVA G +GG EQWCDA+VLRILR Sbjct 1033 TAEVAARFGLGLRVTSDVLGRLAADGRLVRGDFVAETPGPSGGVAGAEQWCDADVLRILR 1092 Query 1078 RRSLAALRAQAEPVSTAAYGRFLPAWQHVSA-------GNSGIDGLAAVIDQLAGVRIPA 1130 RRSLAALRAQ EPVSTAAYGRFLPAW HV A G+SG+DGL +VIDQLAGVR+PA Sbjct 1093 RRSLAALRAQVEPVSTAAYGRFLPAWHHVGAAESPRAPGHSGLDGLMSVIDQLAGVRMPA 1152 Query 1131 SAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPA 1190 SAIEPLVLAPR+RDYSPAMLDELLA+G+VTWSGAGSISGSDGWIALH +SAP+TL PA Sbjct 1153 SAIEPLVLAPRVRDYSPAMLDELLATGEVTWSGAGSISGSDGWIALHAGESAPLTLTGPA 1212 Query 1191 EIDFTDAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAV 1250 +I+ DAHRAIL +L GGAYFFRQL H G+ +A LK ALWELIWAG +TGDTFAPVRAV Sbjct 1213 DIELGDAHRAILDTLAGGGAYFFRQLAHSGVPDAALKTALWELIWAGWITGDTFAPVRAV 1272 Query 1251 LGGAGTRKRAAPAH 1264 LGGAG RKR+APAH Sbjct 1273 LGGAGARKRSAPAH 1286 >gi|289759439|ref|ZP_06518817.1| predicted protein [Mycobacterium tuberculosis T85] gi|289715003|gb|EFD79015.1| predicted protein [Mycobacterium tuberculosis T85] Length=1068 Score = 2046 bits (5300), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1045/1056 (99%), Positives = 1048/1056 (99%), Gaps = 0/1056 (0%) Query 1 VRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 +RFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL Sbjct 1 MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL 60 Query 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR Sbjct 61 WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR 120 Query 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT Sbjct 121 VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT 180 Query 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL Sbjct 181 KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL 240 Query 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC Sbjct 241 SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC 300 Query 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA Sbjct 301 GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA 360 Query 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG Sbjct 361 VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG 420 Query 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS Sbjct 421 CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS 480 Query 481 LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 LFEATLDLLSG YPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY Sbjct 481 LFEATLDLLSGTYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY 540 Query 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG Sbjct 541 LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG 600 Query 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP Sbjct 601 DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP 660 Query 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV Sbjct 661 TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV 720 Query 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG Sbjct 721 RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG 780 Query 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA Sbjct 781 RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA 840 Query 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP Sbjct 841 EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP 900 Query 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK Sbjct 901 DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK 960 Query 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF Sbjct 961 RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF 1020 Query 1021 TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVA 1056 TTAAAAARFGLGLRVTADVLG +LVRG+F A Sbjct 1021 TTAAAAARFGLGLRVTADVLGPAGQTIKLVRGDFAA 1056 >gi|169630730|ref|YP_001704379.1| ATP-dependent helicase Lhr [Mycobacterium abscessus ATCC 19977] gi|169242697|emb|CAM63725.1| Probable ATP-dependent helicase Lhr [Mycobacterium abscessus] Length=1517 Score = 2000 bits (5181), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1040/1534 (68%), Positives = 1199/1534 (79%), Gaps = 44/1534 (2%) Query 4 AQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWAL 63 ++P L+RFSA TR+WFT +F PT AQ+ AW +IA+GDNTLVIAPTGSGKTLAAFLWA+ Sbjct 3 SEPGPLARFSAPTREWFTESFPTPTRAQSGAWQSIANGDNTLVIAPTGSGKTLAAFLWAI 62 Query 64 DSLA-----GSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQ 118 D+L + S R +RVLYVSPLKALAVDVERNLR PLAG+ R A R GLP P Sbjct 63 DTLVQEKEAEAAAESRRLRGSRVLYVSPLKALAVDVERNLRAPLAGIARTAARMGLPEPA 122 Query 119 IRVGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIA 178 I +GVRSGDTP RR L+S PPD+LITTPESL+LMLTSAAR+TL V+TVI+DE+HA+A Sbjct 123 ITIGVRSGDTPAQRRRTLISSPPDILITTPESLYLMLTSAARETLDTVRTVIVDEVHAVA 182 Query 179 ATKRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTV 238 TKRGAHLALSLERLD+ S+ AQRIGLSATV+P E+ARFLSG++P T+VAP + KT Sbjct 183 GTKRGAHLALSLERLDERLSQP-AQRIGLSATVKPAAEVARFLSGRAPATVVAPASPKTF 241 Query 239 ELSVQVPVPDMANLTD---------------NTIWPDVEARLVDLIESHNSTIVFANSRR 283 +LSV VPV DM+ ++WP VE R+VDLIE+H S+IVFANSRR Sbjct 242 DLSVVVPVSDMSAPESFPEPEASPDSTRGGATSLWPHVEQRIVDLIEAHRSSIVFANSRR 301 Query 284 LAERLTARLNEIHAARCGIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISK 343 LAERLTAR NEIHA R G++L P N V GG PAHIMGSGQT+GA P+LARAHHGS+SK Sbjct 302 LAERLTARFNEIHAERLGLDLTPMPNPDVPGGPPAHIMGSGQTYGAAPLLARAHHGSVSK 361 Query 344 EQRAVVEEDLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVG 403 EQRA +E+DLK G+LK VVATSSLELGIDMGAVDLV+QV+APPSVASGLQRIGRAGHQVG Sbjct 362 EQRADIEDDLKTGRLKCVVATSSLELGIDMGAVDLVVQVEAPPSVASGLQRIGRAGHQVG 421 Query 404 EISRGVLFPKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADA 463 E+SRGVLFPKHRTDLLGCAV+V+RML G+IET++VPANPLDILAQHTVAA ALE +D + Sbjct 422 EVSRGVLFPKHRTDLLGCAVTVRRMLDGDIETLQVPANPLDILAQHTVAACALESMDVEK 481 Query 464 WFDTVRRAAPFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRL 523 WFD VRR+APF +LPRS F+A LDLLSGKYPST+FAELRPR+VYDRD GTLT RPGAQRL Sbjct 482 WFDVVRRSAPFTSLPRSAFDAVLDLLSGKYPSTDFAELRPRVVYDRDEGTLTGRPGAQRL 541 Query 524 AVTSGGAIPDRGLFAVYLAT----ERPSRVGELDEEMVYESRPGDVISLGATSWRITEIT 579 AVTSGGAIPDRGLF VY+ E+PSRVGELDEEMVYESRPGDVISLGATSWRITEIT Sbjct 542 AVTSGGAIPDRGLFTVYMYAGAEGEKPSRVGELDEEMVYESRPGDVISLGATSWRITEIT 601 Query 580 HDRVLVIPAPGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDD 639 H+RV+V+PA GQP RLPFWRGD GRPAELG ALG LTGELA+ F RCA +GFDD Sbjct 602 HERVVVVPAFGQPGRLPFWRGDSVGRPAELGIALGQLTGELASARDAEFDKRCAAMGFDD 661 Query 640 YATDNLWRLLDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGR 699 +AT NL LL DQ +T VPTD+TL+VERFRDELGDWR++LH PYGLRV+GPLALA+ Sbjct 662 FATGNLRTLLTDQLRSTGAVPTDTTLIVERFRDELGDWRIVLHCPYGLRVNGPLALAISD 721 Query 700 RLRDRYGIDEKPTASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSAL 759 RL+ RYG+ E PTA+D+GIVVRLPDT +DSPPGA+LFVFDA EI+ IVT EV GSAL Sbjct 722 RLQQRYGVSESPTATDDGIVVRLPDT----DDSPPGADLFVFDAAEIESIVTREVGGSAL 777 Query 760 FASRFRESAARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDV 819 FA+RFRE AARALLLPRR PGRRSPLWQQRQRAA+LL+VARK+ DFP+VLE +RECLQDV Sbjct 778 FAARFRECAARALLLPRRTPGRRSPLWQQRQRAAQLLDVARKHSDFPMVLEALRECLQDV 837 Query 820 YDVPILVELMARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALA 879 YD+ LV LM+ I QRR+R+ E +T PSPFAA+ LF Y+G FMY+ D PLAERRAAAL+ Sbjct 838 YDISTLVRLMSGIEQRRIRIVEVQTDTPSPFAAAQLFSYIGGFMYDEDRPLAERRAAALS 897 Query 880 LDGTLLAELLGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDE 939 LD LLAEL+GRVELRELLDP VI AT RQLQHLA +R ARDAE +ADL RLLGPLT +E Sbjct 898 LDTNLLAELMGRVELRELLDPAVIDATERQLQHLAEERKARDAEALADLFRLLGPLTAEE 957 Query 940 IAARAGAPEVSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFT 999 IA R P + WLD L +A+R + S+ RSWW AVED+ RLRD +G VP G+PA+FT Sbjct 958 IAQRCAGPG-AAWLDELVSARRVVGTSYGQRSWWAAVEDVARLRDALGVPVPPGVPAAFT 1016 Query 1000 EAVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAK 1059 +A DPL ELL RYARTH PFTT AA RFGLG+RV AD L +A+ G+LVRGEF + A Sbjct 1017 DAATDPLAELLSRYARTHGPFTTGEAAQRFGLGVRVAADTLSAMAARGQLVRGEFTSDAT 1076 Query 1060 GSAGGEQWCDAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAV 1119 S EQWCDAEVLRILRRRSLAALRAQ EPVST+A+ RFLP WQ++ + GIDG+A V Sbjct 1077 DS---EQWCDAEVLRILRRRSLAALRAQVEPVSTSAFARFLPDWQYLDSNLRGIDGVATV 1133 Query 1120 IDQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPA 1179 I+QLAGV IPASA EPL+LA RIRDYSP MLDELLASG+ WSG GSIS DGWIALHP+ Sbjct 1134 IEQLAGVPIPASAWEPLILARRIRDYSPQMLDELLASGEAVWSGQGSISAQDGWIALHPS 1193 Query 1180 DSAPMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRV 1239 AP TLA + DAHRAIL L GG YFFRQ D +AALW+L+WAG+V Sbjct 1194 GVAPATLAAAETVILDDAHRAILNCLTAGGGYFFRQFGSDA-----TRAALWDLVWAGQV 1248 Query 1240 TGDTFAPVRAVLGGAGTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLP 1299 TGDTFAPVRA+LG + T + AH R PRL Y A DP VAGRWS LP Sbjct 1249 TGDTFAPVRALLGTSTTSR---TAHRNRRAPRLRAYTPITTAA-PVDPAVAGRWSMLPER 1304 Query 1300 EPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIES 1359 T R+H QAELLL R+GV+TK +V AE VAGGFA LYKVLS FED GRC+RGYF+ES Sbjct 1305 LTGGTERSHIQAELLLGRYGVVTKGSVVAESVAGGFAWLYKVLSTFEDNGRCRRGYFVES 1364 Query 1360 LGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARP 1419 LGGAQFA +TVDRLR YLD VD + Y A VLAA DPANPYGAAL WP ++++ RP Sbjct 1365 LGGAQFASPATVDRLREYLDPVDDARKPYRATVLAATDPANPYGAALVWPRATSESGHRP 1424 Query 1420 GRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERA 1479 GRKAGAL VLVDG+LA ++ERGG+SLL+F DP HAAA+G +LV G + +++ER Sbjct 1425 GRKAGALAVLVDGDLALYIERGGKSLLSFVIDPTVLHAAALGTMELVRDGGLDGLVIERI 1484 Query 1480 DGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 DG V G SA + AL+ AGF RTPRGLR R Sbjct 1485 DGRSVFDIGD--SAVVAALMEAGFARTPRGLRIR 1516 >gi|336459620|gb|EGO38555.1| Lhr-like helicase [Mycobacterium avium subsp. paratuberculosis S397] Length=1201 Score = 1894 bits (4906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 984/1199 (83%), Positives = 1067/1199 (89%), Gaps = 28/1199 (2%) Query 342 SKEQRAVVEEDLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQ 401 S A+VEEDLKRG LKAVVATSSLELGIDMGAVDLVIQV+APPSVASGLQRIGRAGHQ Sbjct 4 SARNSALVEEDLKRGLLKAVVATSSLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQ 63 Query 402 VGEISRGVLFPKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDA 461 VGE+SRGVLFPKHRTDL+GCAV+ QRMLAG+IETMRVPANPLDILAQ TVAAAALEPLDA Sbjct 64 VGEVSRGVLFPKHRTDLIGCAVTAQRMLAGQIETMRVPANPLDILAQQTVAAAALEPLDA 123 Query 462 DAWFDTVRRAAPFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQ 521 D WF+TVRRAAPFATLPRS++EATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQ Sbjct 124 DRWFETVRRAAPFATLPRSIYEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQ 183 Query 522 RLAVTSGGAIPDRGLFAVYLATE--RPSRVGELDEEMVYESRPGDVISLGATSWRITEIT 579 RLAVTSGGA+PDRGLF VYLA+E +PSRVGEL+EEMVYESRPGDVISL ATSWRITEIT Sbjct 184 RLAVTSGGAVPDRGLFTVYLASEAEKPSRVGELEEEMVYESRPGDVISLAATSWRITEIT 243 Query 580 HDRVLVIPAPGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDD 639 HDRVLVIPAPGQPARLPFWRGD GRPAELGAALGA TGELA L R F +RCA LGFD Sbjct 244 HDRVLVIPAPGQPARLPFWRGDGVGRPAELGAALGAFTGELAGLSREEFDSRCAALGFDA 303 Query 640 YATDNLWRLLDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGR 699 YA DNL+ L D+QRTA VVPTD+TLLVERFRDELGDWRVILHSPYGL V+GPLALAVGR Sbjct 304 YAVDNLYGLFDEQRTAAGVVPTDTTLLVERFRDELGDWRVILHSPYGLGVNGPLALAVGR 363 Query 700 RLRDRYGIDEKPTASDNGIVVRLPDTVSA----GEDSPPGAELFVFDADEIDPIVTTEVA 755 RLR+RYGIDEKPTASD+G+VVRLPDTVS G D+PPGAELFVFDADEIDPIVT EV Sbjct 364 RLRERYGIDEKPTASDDGVVVRLPDTVSDFASDGGDTPPGAELFVFDADEIDPIVTAEVG 423 Query 756 GSALFASRFRESAARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVREC 815 GSALFASRFRE AARALLLPRRHPGRRSPLWQQRQRAA+LLEVARKYPDFP+VLETVREC Sbjct 424 GSALFASRFRECAARALLLPRRHPGRRSPLWQQRQRAAQLLEVARKYPDFPVVLETVREC 483 Query 816 LQDVYDVPILVELMARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRA 875 LQDVYDVP LV LMA IAQRRVRV E ET +PSPFAASLLFGYVGAFMYEGD+PLAERRA Sbjct 484 LQDVYDVPALVALMASIAQRRVRVLEVETQRPSPFAASLLFGYVGAFMYEGDSPLAERRA 543 Query 876 AALALDGTLLAELLGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPL 935 AAL+LD TLLAELLGRVELRELLDP+V+AAT+R LQHLA +R ARDAE VADLLRLLGPL Sbjct 544 AALSLDSTLLAELLGRVELRELLDPEVVAATARALQHLAPERAARDAEAVADLLRLLGPL 603 Query 936 TEDEIAARAG---APEVSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPV 992 TEDE+ ARAG A EV GWL+GLRAA+RA+ VSFAGRSWWVA+ED+GRLRDG+G AVP+ Sbjct 604 TEDEVVARAGGADAVEVRGWLEGLRAARRAVPVSFAGRSWWVAIEDIGRLRDGLGIAVPL 663 Query 993 GLPASFTEAVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLA----SDGR 1048 G+PA+FTE VADPLGELLGRYARTHTPF+TA AAARFGLGLRVTADVLGRLA S GR Sbjct 664 GVPAAFTEEVADPLGELLGRYARTHTPFSTAEAAARFGLGLRVTADVLGRLADPSTSQGR 723 Query 1049 LVRGEFVAAAKGSAGG----EQWCDAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQ 1104 LVRG+FVAA GG EQWCDA+VLRILRRRSLAALRAQ EPVSTAAYGRFLPAW Sbjct 724 LVRGDFVAARPSEPGGVLGAEQWCDADVLRILRRRSLAALRAQVEPVSTAAYGRFLPAWH 783 Query 1105 HVSA-------GNSGIDGLAAVIDQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASG 1157 V A G+SG+DGL +VI+QLAGVR+PASA+EPLVLAPR+RDYSPA+LDELLA+G Sbjct 784 RVGAAESSRAPGHSGLDGLMSVIEQLAGVRLPASALEPLVLAPRVRDYSPALLDELLATG 843 Query 1158 DVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQLT 1217 +VTWSGAGSISGSDGWIALHP++SAP+TL PA+I+ +AHRAIL L GG YFFRQL Sbjct 844 EVTWSGAGSISGSDGWIALHPSESAPLTLQGPADIELGEAHRAILDVLAGGGGYFFRQLA 903 Query 1218 HDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRAAPAHGGHRPPRLSRYRL 1277 DG+++AELKAA+WEL+WAG +TGDTFAPVRA+LGG GTR+R+APAH RPPRLSRY + Sbjct 904 TDGVSDAELKAAVWELVWAGWITGDTFAPVRALLGGGGTRRRSAPAHRAQRPPRLSRYSV 963 Query 1278 THAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFAT 1337 H QAR ADPTVAGRWS LP PEPDST+RAH+QAELLL RHGVLT+ AVAAEGVAGGFAT Sbjct 964 AHPQARPADPTVAGRWSLLPPPEPDSTVRAHFQAELLLGRHGVLTRGAVAAEGVAGGFAT 1023 Query 1338 LYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAAD 1397 LYKVLS FEDAGRCQRGYFIESLGGAQFAVASTVDRLR + DGVDP++P+Y A+VLAAAD Sbjct 1024 LYKVLSTFEDAGRCQRGYFIESLGGAQFAVASTVDRLRGFADGVDPQRPEYRAIVLAAAD 1083 Query 1398 PANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHA 1457 PANPYGAALPWPASSADG ARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDP A HA Sbjct 1084 PANPYGAALPWPASSADG-ARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPAAQHA 1142 Query 1458 AAIGLADLVTAGRVASILVERADGMPVLQPGGRASA---ALTALLAAGFVRTPRGLRRR 1513 AA LA LV+A RVA+ILVER DG+P L P G +A ALTAL AGF RTPRG+R R Sbjct 1143 AAAALAGLVSARRVAAILVERIDGVPALAPRGDGAAGNDALTALADAGFARTPRGMRLR 1201 >gi|312140745|ref|YP_004008081.1| dead/deah box helicase [Rhodococcus equi 103S] gi|311890084|emb|CBH49402.1| DEAD/DEAH box helicase [Rhodococcus equi 103S] Length=1525 Score = 1837 bits (4757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 985/1542 (64%), Positives = 1158/1542 (76%), Gaps = 58/1542 (3%) Query 7 SALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSL 66 + L RFSA TR+WF F APTAAQ AW +IA G +TLV+APTGSGKTL+AFLWALD L Sbjct 6 AVLDRFSAPTREWFDGAFPAPTAAQLGAWDSIASGSHTLVVAPTGSGKTLSAFLWALDRL 65 Query 67 A------------GSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGL 114 A +E + T+VLY+SPLKAL VDVERNLR PL G+T+ A+R G Sbjct 66 ATAVEAGASDEKRAAERRTTEQRTTKVLYISPLKALGVDVERNLRAPLVGITQTAKRLGF 125 Query 115 PAPQIRVGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEI 174 P+IRVGVRSGDTP RR+++ PPD+LITTPESLFLMLTS+AR+TLTGV+TVI+DE+ Sbjct 126 EPPEIRVGVRSGDTPTGERRKMIKTPPDILITTPESLFLMLTSSARETLTGVETVIVDEV 185 Query 175 HAIAATKRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPA 234 HA+A TKRGAHLALSLERLD L + QRIGLSATVRP EE+ RFL+G +P IVAPPA Sbjct 186 HAVAGTKRGAHLALSLERLDMLRDKP-VQRIGLSATVRPHEEVGRFLAGSAPIRIVAPPA 244 Query 235 AKTVELSVQVPVPDMANL--------------TDNTIWPDVEARLVDLIESHNSTIVFAN 280 AKT +L+V+VPV DM L +IWP VE ++VDLI H S+IVFAN Sbjct 245 AKTFDLTVRVPVEDMTELGIAEPDPESMSPTPQAGSIWPHVEEQIVDLILDHRSSIVFAN 304 Query 281 SRRLAERLTARLNEIHAARCGIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGS 340 SRRLAE+LTARLNEI+A R G + GAP + +GA P+LARAHHGS Sbjct 305 SRRLAEKLTARLNEIYAERLGGAVEKQGRPPAQLGAPTEV-----NYGADPLLARAHHGS 359 Query 341 ISKEQRAVVEEDLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGH 400 +SK+QRA++E+DLK G+L+ VVATSSLELGIDMGAVDLV+QV+APPSVASGLQR+GRAGH Sbjct 360 VSKDQRAIIEDDLKSGRLRCVVATSSLELGIDMGAVDLVVQVEAPPSVASGLQRVGRAGH 419 Query 401 QVGEISRGVLFPKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLD 460 QVGEISRGVLFPKHRTDL+ CAV+V+RM G+IE + +PANPLDILAQ TVAA ALEPLD Sbjct 420 QVGEISRGVLFPKHRTDLIHCAVTVERMTNGKIEALEIPANPLDILAQQTVAATALEPLD 479 Query 461 ADAWFDTVRRAAPFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGA 520 + W+D VRR+ FATLPRS +E+TLDLL+G+YPS EFAELRPRLV+DRD GTLT RPG+ Sbjct 480 VEQWYDVVRRSGSFATLPRSAYESTLDLLAGRYPSDEFAELRPRLVWDRDGGTLTGRPGS 539 Query 521 QRLAVTSGGAIPDRGLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITH 580 QRLAVTSGGAIPDRGLFAVY+ ER SRVGELDEEMVYESR GDV +LGATSWRI EIT+ Sbjct 540 QRLAVTSGGAIPDRGLFAVYMVGERQSRVGELDEEMVYESRVGDVFALGATSWRIEEITY 599 Query 581 DRVLVIPAPGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDY 640 DRVLV PA G P RLPFW GD GRPAELG ALG EL++ R G D Sbjct 600 DRVLVSPAYGLPGRLPFWHGDGLGRPAELGEALGGFLRELSSSTPDEVAARLVAAGLDTN 659 Query 641 ATDNLWRLLDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRR 700 AT NL L++DQ+ AT VPTD TL+VERFRDELGDWR++LHSPYGLRVH P ALA+G R Sbjct 660 ATTNLAALIEDQQQATGRVPTDRTLVVERFRDELGDWRLVLHSPYGLRVHAPWALAIGAR 719 Query 701 LRDRYGIDEKPTASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALF 760 LR+R+G+D PTASD+GI+VRLPDT +D+PPGAELF F+ DEI+ IVT EV GSALF Sbjct 720 LRERFGVDAAPTASDDGIIVRLPDT----DDTPPGAELFAFERDEIEDIVTDEVGGSALF 775 Query 761 ASRFRESAARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVY 820 ASRFRE AARALLLPRR PG+R+PLWQQRQR+A+LL+VARK+P FPI+LETVRECLQDVY Sbjct 776 ASRFRECAARALLLPRRTPGKRAPLWQQRQRSAQLLDVARKFPTFPILLETVRECLQDVY 835 Query 821 DVPILVELMARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALAL 880 D+P L +L RIA+R++R+ E ETA PSPFA+SLLF YVGAFMYEGD+PLAERRAAAL+L Sbjct 836 DLPALRDLFGRIARRQIRMVEVETATPSPFASSLLFDYVGAFMYEGDSPLAERRAAALSL 895 Query 881 DGTLLAELLGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEI 940 D TLLAELLGRVELRELLD DVIA R+LQ LA +R ARD EG+ADLLRLLGP+T +E Sbjct 896 DSTLLAELLGRVELRELLDADVIAKAERELQRLAPERHARDVEGMADLLRLLGPVTTEEA 955 Query 941 AARAGAPEVSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTE 1000 A R+ A V WLD L A +RAL VSFAGR WW AVED RLRDG+G +P+G PA+F E Sbjct 956 AERSTADPVP-WLDELVAHRRALRVSFAGRQWWTAVEDAARLRDGLGVPLPIGTPAAFIE 1014 Query 1001 AVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKG 1060 V DPLG+LLGRYARTH PFT + AA RFG+G V DVL RLA++ R+V GEF A G Sbjct 1015 PVDDPLGDLLGRYARTHGPFTVSEAAERFGIGSAVARDVLARLANEKRVVEGEFRPGASG 1074 Query 1061 SAGGEQWCDAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVI 1120 S +WCDAEVLR LRRRSLAA R + EPVSTA GRFLP WQHV G+DG+ V+ Sbjct 1075 S----EWCDAEVLRRLRRRSLAAAREEVEPVSTATLGRFLPGWQHVGGSLRGLDGVVTVV 1130 Query 1121 DQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPAD 1180 +QLAGV +PASA+E L+LA R+RDYSPAMLDEL A+G+V WSGAG ISG DGW++LH AD Sbjct 1131 EQLAGVPVPASALESLILASRVRDYSPAMLDELTATGEVLWSGAGQISGKDGWVSLHLAD 1190 Query 1181 SAPMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQL--THDGLTEAELKAALWELIWAGR 1238 S+P+TLA PAEID TD HR+IL +L GGAYFFRQL T + L AA+W+L+WAG Sbjct 1191 SSPLTLATPAEIDLTDLHRSILDTLAGGGAYFFRQLSDTVQSTDDTALAAAIWDLVWAGY 1250 Query 1239 VTGDTFAPVRAVLGGAGTRKRAAPAH-GGHRPPRLSRYRLT---HAQARNADPTVAGRWS 1294 + DT AP+RA+L RA P+H R PR YR R+ PT GRWS Sbjct 1251 IGNDTLAPLRALLSDT---SRATPSHRTPRRAPRAHAYRRLGRPTMPTRSGPPTAGGRWS 1307 Query 1295 ALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRG 1354 LP PEPD TLRAH A+LLL R+GV+T+ +V AE V GGFA++YKVL+ FED GRC+RG Sbjct 1308 LLPEPEPDPTLRAHATADLLLERYGVVTRGSVVAEEVPGGFASMYKVLTGFEDGGRCRRG 1367 Query 1355 YFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSAD 1414 YF+++LGGAQF+ VDRLR++ D ++ AV LAA+DPANPYGAALPWP S A Sbjct 1368 YFVDTLGGAQFSTPDVVDRLRTHSDSIEGRHAAAPAVTLAASDPANPYGAALPWPQSMAG 1427 Query 1415 GTA---RPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRV 1471 A RPGRKAG LV LVDGEL F+ERGGR++LTFTDD AA LA V G + Sbjct 1428 DDAPKHRPGRKAGGLVSLVDGELVLFVERGGRTVLTFTDDIGVLRTAAESLAATVKRGGI 1487 Query 1472 ASILVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 ++VE+ DG + G A L L GF TPRG R R Sbjct 1488 DKVVVEKVDGATI---HGNDFAPL--LTEVGFSATPRGFRLR 1524 >gi|325675615|ref|ZP_08155299.1| ATP-dependent helicase [Rhodococcus equi ATCC 33707] gi|325553586|gb|EGD23264.1| ATP-dependent helicase [Rhodococcus equi ATCC 33707] Length=1530 Score = 1835 bits (4753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 984/1547 (64%), Positives = 1157/1547 (75%), Gaps = 63/1547 (4%) Query 7 SALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSL 66 + L RFSA TR+WF F APTAAQ AW +IA G +TLV+APTGSGKTL+AFLWALD L Sbjct 6 AVLDRFSAPTREWFDGAFPAPTAAQLGAWDSIASGSHTLVVAPTGSGKTLSAFLWALDRL 65 Query 67 AG-----------------SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLA 109 A +E + T+VLY+SPLKAL VDVERNLR PL G+T+ A Sbjct 66 ATAVEAGASDEKRAAEQRTTEQRTTEQRTTKVLYISPLKALGVDVERNLRAPLVGITQTA 125 Query 110 ERQGLPAPQIRVGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTV 169 +R G P+IRVGVRSGDTP RR+++ PPD+LITTPESLFLMLTS+AR+TLTGV+TV Sbjct 126 KRLGFEPPEIRVGVRSGDTPTGERRKMIKTPPDILITTPESLFLMLTSSARETLTGVETV 185 Query 170 IIDEIHAIAATKRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTI 229 I+DE+HA+A TKRGAHLALSLERLD L + QRIGLSATVRP EE+ RFL+G +P I Sbjct 186 IVDEVHAVAGTKRGAHLALSLERLDMLRDKP-VQRIGLSATVRPHEEVGRFLAGSAPIRI 244 Query 230 VAPPAAKTVELSVQVPVPDMANL--------------TDNTIWPDVEARLVDLIESHNST 275 VAPPAAKT +L+V+VPV DM L +IWP VE ++VDLI H S+ Sbjct 245 VAPPAAKTFDLTVRVPVEDMTELGIAEPDPESMSPTPQAGSIWPHVEEQIVDLILDHRSS 304 Query 276 IVFANSRRLAERLTARLNEIHAARCGIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLAR 335 IVFANSRRLAE+LTARLNEI+A R G + GAP + +GA P+LAR Sbjct 305 IVFANSRRLAEKLTARLNEIYAERLGGAVEKQGRPPAQLGAPTEV-----NYGADPLLAR 359 Query 336 AHHGSISKEQRAVVEEDLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRI 395 AHHGS+SK+QRA++E+DLK G+L+ VVATSSLELGIDMGAVDLV+QV+APPSVASGLQR+ Sbjct 360 AHHGSVSKDQRAIIEDDLKSGRLRCVVATSSLELGIDMGAVDLVVQVEAPPSVASGLQRV 419 Query 396 GRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAA 455 GRAGHQVGEISRGVLFPKHRTDL+ CAV+V+RM G+IE + +PANPLDILAQ TVAA A Sbjct 420 GRAGHQVGEISRGVLFPKHRTDLIHCAVTVERMTNGKIEALEIPANPLDILAQQTVAATA 479 Query 456 LEPLDADAWFDTVRRAAPFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLT 515 LEPLD + W+D VRR+ FATLPRS +E+TLDLL+G+YPS EFAELRPRLV+DRD GTLT Sbjct 480 LEPLDVEQWYDVVRRSGSFATLPRSAYESTLDLLAGRYPSDEFAELRPRLVWDRDGGTLT 539 Query 516 ARPGAQRLAVTSGGAIPDRGLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRI 575 RPG+QRLAVTSGGAIPDRGLFAVY+ ER SRVGELDEEMVYESR GDV +LGATSWRI Sbjct 540 GRPGSQRLAVTSGGAIPDRGLFAVYMVGERQSRVGELDEEMVYESRVGDVFALGATSWRI 599 Query 576 TEITHDRVLVIPAPGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGL 635 EIT+DRVLV PA G P RLPFW GD GRPAELG ALG EL++ R Sbjct 600 EEITYDRVLVSPAYGLPGRLPFWHGDGLGRPAELGEALGGFLRELSSSTPDEVAARLVAA 659 Query 636 GFDDYATDNLWRLLDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLAL 695 G D AT NL L++DQ+ AT VPTD TL+VERFRDELGDWR++LHSPYGLRVH P AL Sbjct 660 GLDTNATTNLAALIEDQQQATGRVPTDRTLVVERFRDELGDWRLVLHSPYGLRVHAPWAL 719 Query 696 AVGRRLRDRYGIDEKPTASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVA 755 A+G RLR+R+G+D PTASD+GI+VRLPDT +D+PPGAELF F+ DEI+ IVT EV Sbjct 720 AIGARLRERFGVDAAPTASDDGIIVRLPDT----DDTPPGAELFAFERDEIEDIVTDEVG 775 Query 756 GSALFASRFRESAARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVREC 815 GSALFASRFRE AARALLLPRR PG+R+PLWQQRQR+A+LL+VARK+P FPI+LETVREC Sbjct 776 GSALFASRFRECAARALLLPRRTPGKRAPLWQQRQRSAQLLDVARKFPTFPILLETVREC 835 Query 816 LQDVYDVPILVELMARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRA 875 LQDVYD+P L +L RIA+R++R+ E ETA PSPFA+SLLF YVGAFMYEGD+PLAERRA Sbjct 836 LQDVYDLPALRDLFGRIARRQIRMVEVETATPSPFASSLLFDYVGAFMYEGDSPLAERRA 895 Query 876 AALALDGTLLAELLGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPL 935 AAL+LD TLLAELLGRVELRELLD DVIA R+LQ L +R ARD EG+ADLLRLLGP+ Sbjct 896 AALSLDSTLLAELLGRVELRELLDADVIAKAERELQRLTPERHARDVEGMADLLRLLGPV 955 Query 936 TEDEIAARAGAPEVSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLP 995 T +E A R+ A V WLD L A +RAL VSFAGR WW AVED RLRDG+G +P+G P Sbjct 956 TTEEAAERSTADPVP-WLDELVAHRRALRVSFAGRQWWTAVEDAARLRDGLGVPLPIGTP 1014 Query 996 ASFTEAVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFV 1055 A+F E V DPLG+LLGRYARTH PFT + AA RFG+G V DVL RLA++ R+V GEF Sbjct 1015 AAFIEPVDDPLGDLLGRYARTHGPFTVSEAAERFGIGSAVARDVLARLANEKRVVEGEFR 1074 Query 1056 AAAKGSAGGEQWCDAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDG 1115 A GS +WCDAEVLR LRRRSLAA R + EPVSTA GRFLP WQHV G+DG Sbjct 1075 PGASGS----EWCDAEVLRRLRRRSLAAAREEVEPVSTATLGRFLPGWQHVGGSLRGLDG 1130 Query 1116 LAAVIDQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIA 1175 + V++QLAGV +PASA+E L+LA R+RDYSPAMLDEL A+G+V WSGAG ISG DGW++ Sbjct 1131 VVTVVEQLAGVPVPASALESLILASRVRDYSPAMLDELTATGEVLWSGAGQISGKDGWVS 1190 Query 1176 LHPADSAPMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQL--THDGLTEAELKAALWEL 1233 LH ADS+P+TLA PAEID TD HR+IL +L GGAYFFRQL T + L AA+W+L Sbjct 1191 LHLADSSPLTLATPAEIDLTDLHRSILDTLAGGGAYFFRQLSDTVQSTDDTALAAAIWDL 1250 Query 1234 IWAGRVTGDTFAPVRAVLGGAGTRKRAAPAH-GGHRPPRLSRYRLT---HAQARNADPTV 1289 +WAG + DT AP+RA+L RA P+H R PR YR R+ PT Sbjct 1251 VWAGYIGNDTLAPLRALLSDT---SRATPSHRTPRRAPRAHAYRRLGRPTMPTRSGPPTA 1307 Query 1290 AGRWSALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAG 1349 GRWS LP PEPD TLRAH A+LLL R+GV+T+ +V AE V GGFA++YKVL+ FED G Sbjct 1308 GGRWSLLPEPEPDPTLRAHATADLLLERYGVVTRGSVVAEEVPGGFASMYKVLTGFEDGG 1367 Query 1350 RCQRGYFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWP 1409 RC+RGYF+++LGGAQF+ VDRLR++ D ++ AV LAA+DPANPYGAALPWP Sbjct 1368 RCRRGYFVDTLGGAQFSTPDVVDRLRTHSDSIEGRHAAAPAVTLAASDPANPYGAALPWP 1427 Query 1410 ASSADGTA---RPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLV 1466 S A A RPGRKAG LV LVDGEL F+ERGGR++LTFTDD AA LA V Sbjct 1428 QSMAGDDAPKHRPGRKAGGLVSLVDGELVLFVERGGRTVLTFTDDIGVLRTAAESLAATV 1487 Query 1467 TAGRVASILVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 G + ++VE+ DG + G A L L GF TPRG R R Sbjct 1488 KRGGIDKVVVEKVDGATI---HGNDFAPL--LTEVGFSATPRGFRLR 1529 >gi|111023234|ref|YP_706206.1| ATP-dependent helicase [Rhodococcus jostii RHA1] gi|110822764|gb|ABG98048.1| probable ATP-dependent helicase [Rhodococcus jostii RHA1] Length=1516 Score = 1825 bits (4726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 974/1522 (64%), Positives = 1139/1522 (75%), Gaps = 42/1522 (2%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L RFSA TR+WF F APTAAQ AW +IA +TLV+APTGSGKTL+AFLW+LD LA Sbjct 19 LGRFSAATREWFDGAFPAPTAAQLGAWESIASRAHTLVVAPTGSGKTLSAFLWSLDQLAA 78 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 ++ + T+VLY+SPLKAL VDVERNLR PL G+T+ A+R GL P+I VGVRSGDT Sbjct 79 TDGKDRK---TKVLYISPLKALGVDVERNLRAPLVGITQTAKRLGLTPPEISVGVRSGDT 135 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 P RR L+ PPD+LITTPESLFLMLTSAAR+TLT V TVI+DE+HA+A TKRGAHLAL Sbjct 136 PAGDRRALIKNPPDILITTPESLFLMLTSAARETLTQVDTVIVDEVHAVAGTKRGAHLAL 195 Query 189 SLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVPD 248 SLERLD L + AQRIGLSATVRP EE+ RFLSG +P IVAPP+ KT +L+VQVPV D Sbjct 196 SLERLDQLLATP-AQRIGLSATVRPHEEVGRFLSGSAPIRIVAPPSPKTFDLTVQVPVED 254 Query 249 MANL--------------TDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNE 294 M L +IWP VE ++VDL+ +H S+IVFANSRRLAERLTARLNE Sbjct 255 MTELGLAEPAEGSASATPQAGSIWPHVEEQIVDLVLAHRSSIVFANSRRLAERLTARLNE 314 Query 295 IHAARCGIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLK 354 I+A R G + + G P+ + FGA P+LARAHHGS+SK+QRA++E+DLK Sbjct 315 IYAERAGTAVDKNPKPASQIGTPSEV-----NFGADPLLARAHHGSVSKDQRALIEDDLK 369 Query 355 RGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKH 414 G+L+ VVATSSLELGIDMGAVDLVIQV+APPSVA+GLQR+GRAGHQVGEISRGV+FPKH Sbjct 370 SGRLRCVVATSSLELGIDMGAVDLVIQVEAPPSVANGLQRVGRAGHQVGEISRGVVFPKH 429 Query 415 RTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPF 474 RTDL+ CAV+V+RM+ G+IE + VPANPLDILAQHTVAA ALEPLD D WF+TVRR+ F Sbjct 430 RTDLVHCAVTVERMVTGKIEALAVPANPLDILAQHTVAATALEPLDVDDWFETVRRSGSF 489 Query 475 ATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDR 534 ATLPRS +E+TLDLL+G YPS EFAELRPRLV+DR+ TLT RPGAQRLAVTSGGAIPDR Sbjct 490 ATLPRSAYESTLDLLAGLYPSDEFAELRPRLVWDREANTLTGRPGAQRLAVTSGGAIPDR 549 Query 535 GLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPAR 594 GLF VY+ E+ SRVGELDEEMVYESR GDV +LGATSWRI EIT DRVLV PA GQP R Sbjct 550 GLFTVYMVGEKASRVGELDEEMVYESRVGDVFALGATSWRIEEITFDRVLVSPAYGQPGR 609 Query 595 LPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRT 654 LPFW GD GRPAELG ALG E++ T RC G D+ AT+NL +L+ +Q+T Sbjct 610 LPFWHGDGLGRPAELGEALGQFLREISLGHETEVQERCRTGGLDENATNNLVQLVAEQKT 669 Query 655 ATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTAS 714 AT VPTD TL+VERFRDELGDWR+ILHSPYG RVH P ALAV RL +RYG+D TAS Sbjct 670 ATGQVPTDRTLVVERFRDELGDWRLILHSPYGQRVHAPWALAVSARLSERYGLDSNATAS 729 Query 715 DNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLL 774 D+GI+VRLPDT ED+PPGA+LF FD DEI+ IVT +V GSALFASRFRE AARALLL Sbjct 730 DDGIIVRLPDT----EDTPPGADLFAFDTDEIEDIVTEQVGGSALFASRFRECAARALLL 785 Query 775 PRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQ 834 PRR PG+R+PLWQQRQR+A+LL+VARKYP FPI+LETVRECLQDVYD+P L +L+ R+A+ Sbjct 786 PRRTPGKRAPLWQQRQRSAQLLDVARKYPTFPILLETVRECLQDVYDLPALKDLLRRLAR 845 Query 835 RRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVEL 894 R++R+ E ET PSPFA +LLF YVG FMYEGD+PLAERRAAAL+LD TLLAELLGRVEL Sbjct 846 RQIRIVEVETQSPSPFAGALLFNYVGEFMYEGDSPLAERRAAALSLDSTLLAELLGRVEL 905 Query 895 RELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLD 954 RELLD DVIA +LQ L DR A+D EGVADLLRLLGPLT DE+AAR+ + + WLD Sbjct 906 RELLDADVIAHAELELQRLLPDRKAKDLEGVADLLRLLGPLTSDEVAARSASDPIP-WLD 964 Query 955 GLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYA 1014 L AKRAL VSFAGR WW A+ED RLRDG+G +P+G+PA+F E V DPL +L+ RYA Sbjct 965 ELVRAKRALAVSFAGREWWTAIEDAARLRDGLGVPLPIGVPAAFIEPVDDPLADLISRYA 1024 Query 1015 RTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLR 1074 RT PFT AAARFGLG V DVL RLA R+V GEF A GS +WCDAEVLR Sbjct 1025 RTRGPFTITDAAARFGLGSAVARDVLQRLAQGKRVVEGEFRPGATGS----EWCDAEVLR 1080 Query 1075 ILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIE 1134 LRRRSLAA R + EPVSTA GRFLP WQHV GIDG+A V +QLAGV +PASA+E Sbjct 1081 RLRRRSLAAARQEVEPVSTATLGRFLPGWQHVGGTLRGIDGVATVAEQLAGVPVPASALE 1140 Query 1135 PLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDF 1194 L+L R+ DYSPAMLDEL ++G+V WSGAGSISG DGW+ LHPAD+AP+TL PAE D Sbjct 1141 SLILPSRVADYSPAMLDELTSTGEVLWSGAGSISGKDGWVCLHPADTAPLTLTTPAESDL 1200 Query 1195 TDAHRAILASLGTGGAYFFRQL--THDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLG 1252 +D R +L +L GGAYFFRQL T + + L ALW+L+W G + DT APVRA+L Sbjct 1201 SDVQRQVLDTLSGGGAYFFRQLADTLEMSDDTALATALWDLVWLGHIGNDTLAPVRALLS 1260 Query 1253 GAGTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAE 1312 +R + P + LT R A PTV GRWS LP E D+TLRA AE Sbjct 1261 DT-SRTTTSHRSPRRPPRARAYRSLT-VPVRTAPPTVGGRWSILPAAESDATLRASATAE 1318 Query 1313 LLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVD 1372 LLL R+GV+T+ +V E V GGFA +YKVL FED GRC+RG+F+ESLGGAQF+ VD Sbjct 1319 LLLERYGVVTRGSVMTENVPGGFALMYKVLGTFEDNGRCRRGHFVESLGGAQFSTPPVVD 1378 Query 1373 RLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTA-RPGRKAGALVVLVD 1431 RLRSY D ++ AV LAA+DPANPYGAALPWP S D A RPGRKAG LVVLV+ Sbjct 1379 RLRSYGDSLEGRHTTLPAVTLAASDPANPYGAALPWPKRSDDAPAHRPGRKAGGLVVLVE 1438 Query 1432 GELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRA 1491 GEL F+ERGGR++LTFTDDP AA+ LA +V G + I+VE+ DG + Sbjct 1439 GELILFVERGGRTILTFTDDPGVLRTAAVTLAGVVKRGGIDKIVVEKVDGDTI-----HG 1493 Query 1492 SAALTALLAAGFVRTPRGLRRR 1513 S L AGF TPRG R R Sbjct 1494 SDFAPILTEAGFSPTPRGFRLR 1515 >gi|229489397|ref|ZP_04383260.1| dead/H associated family protein [Rhodococcus erythropolis SK121] gi|229323494|gb|EEN89252.1| dead/H associated family protein [Rhodococcus erythropolis SK121] Length=1515 Score = 1814 bits (4699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 963/1539 (63%), Positives = 1147/1539 (75%), Gaps = 62/1539 (4%) Query 7 SALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSL 66 + L RFS TR+WF F+APTAAQ AW +IA G +TLV+APTGSGKTL+AFLWALD L Sbjct 6 NVLGRFSPATREWFGGAFSAPTAAQLGAWESIASGSHTLVVAPTGSGKTLSAFLWALDQL 65 Query 67 AGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSG 126 A + E AT+VLY+SPLKAL VDVERNLR PL G+T+ A+R GL P+I VGVRSG Sbjct 66 AAKD---EGERATKVLYISPLKALGVDVERNLRAPLVGITQTAKRLGLTPPEITVGVRSG 122 Query 127 DTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHL 186 DT A RR L+ +PPD+LITTPESLFLMLTSAAR+TL GV TVI+DE+HA+A TKRG+HL Sbjct 123 DTSQADRRSLIKRPPDILITTPESLFLMLTSAARETLVGVDTVIVDEVHAVAGTKRGSHL 182 Query 187 ALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPV 246 ALSLERLD L R AQRIGLSATVRP EE+ RFL+G +P IVAPPAAKT +L+V+VPV Sbjct 183 ALSLERLDGLLERP-AQRIGLSATVRPHEEIGRFLAGSAPIRIVAPPAAKTFDLTVRVPV 241 Query 247 PDMANLTDNT--------------IWPDVEARLVDLIESHNSTIVFANSRRLAERLTARL 292 DM L T IWP VE ++VDL+ H S+IVFANSRRLAERLTARL Sbjct 242 EDMTELGIATPDDGSESPTPQAGSIWPHVEEQIVDLVLDHRSSIVFANSRRLAERLTARL 301 Query 293 NEIHAARCGIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEED 352 NEIHA R G+ + + GAP + +GA P+LARAHHGS+SK+QRA++E+D Sbjct 302 NEIHAERIGLAVEKTSRPPAQIGAPTEV-----NYGAEPLLARAHHGSVSKDQRALIEDD 356 Query 353 LKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFP 412 LK G+L+ VVATSSLELGIDMGAVDLVIQV+APPSVASGLQR+GRAGHQVGEISRGV+FP Sbjct 357 LKSGRLRCVVATSSLELGIDMGAVDLVIQVEAPPSVASGLQRVGRAGHQVGEISRGVVFP 416 Query 413 KHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAA 472 KHRTDL+ CAV+V+RM+ G+IE M VPANPLDILAQ TVAA ALEP+D D WF+TVRR+ Sbjct 417 KHRTDLIHCAVTVERMVEGKIEAMAVPANPLDILAQQTVAATALEPIDVDDWFETVRRSG 476 Query 473 PFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIP 532 FATLPRS +E+TLDLL+G+YPS EFAELRPRLV+DR++ TLTARPG+QRLAVTSGGAIP Sbjct 477 SFATLPRSAYESTLDLLAGRYPSDEFAELRPRLVWDRESNTLTARPGSQRLAVTSGGAIP 536 Query 533 DRGLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQP 592 DRGLF VY+ E+ SRVGELDEEMVYESR GDV +LGATSWRI EIT DRVLV PA G P Sbjct 537 DRGLFTVYMVGEKASRVGELDEEMVYESRVGDVFALGATSWRIEEITFDRVLVSPAYGMP 596 Query 593 ARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQ 652 RLPFW GD GRPAELG ALG E A + RC G D AT NL +L+ +Q Sbjct 597 GRLPFWHGDGLGRPAELGQALGQFVRETALGNEADVVERCRVGGLDHNATTNLIQLVGEQ 656 Query 653 RTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPT 712 + AT VP+D TL+VERFRDELGDWR++LHSPYG RVH P ALA+G RL++RYG+D PT Sbjct 657 KNATGQVPSDRTLVVERFRDELGDWRLVLHSPYGQRVHAPWALAIGARLQERYGVDSSPT 716 Query 713 ASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARAL 772 ASD+GI++RLPDT E+ PPGAELF FD ++I+ +VT EV GSALFASRFRE AARAL Sbjct 717 ASDDGIIIRLPDT----ENEPPGAELFTFDVEDIEDLVTQEVGGSALFASRFRECAARAL 772 Query 773 LLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARI 832 LLPRR+PG+R+PLWQQRQR+A+LL+VARK+P FPI+LETVRECLQDVYD+P L EL +I Sbjct 773 LLPRRNPGKRAPLWQQRQRSAQLLDVARKFPTFPILLETVRECLQDVYDLPALKELFGKI 832 Query 833 AQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRV 892 +R++R+ E ETA PSPFA++LLF YVGAFMYEGD+PLAERRAAAL+LD TLLAELLGRV Sbjct 833 EKRQIRIVEVETASPSPFASALLFNYVGAFMYEGDSPLAERRAAALSLDSTLLAELLGRV 892 Query 893 ELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGW 952 ELRELLD VI R+LQ L DR A+D EGVADLLR+LGPLT +E+ R VS W Sbjct 893 ELRELLDAGVIEQAERELQRLVPDRKAKDLEGVADLLRMLGPLTTEEVTERCLEDPVS-W 951 Query 953 LDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGR 1012 L+ L KRAL VS+AG SWW VED RLRDG+G +P+G+PA+F E V PL +LL R Sbjct 952 LEKLVTDKRALHVSYAGESWWTVVEDAARLRDGLGVPLPIGVPAAFIEPVDQPLDDLLSR 1011 Query 1013 YARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEV 1072 YARTH PFT A AAARFGLG+ V DVLGRLA + R++ GEF + SA G +WCDAEV Sbjct 1012 YARTHGPFTLADAAARFGLGVSVARDVLGRLALEKRVLEGEF----RPSATGSEWCDAEV 1067 Query 1073 LRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASA 1132 LR LRRRSLAA R + EPVSTA GRFLP+WQHV GIDG+A V+DQLAGV IPASA Sbjct 1068 LRRLRRRSLAAARQEVEPVSTATLGRFLPSWQHVGGTLRGIDGVATVVDQLAGVPIPASA 1127 Query 1133 IEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEI 1192 +E L+L R+ DYSPAMLDEL ++G+V WSG+G+ISG DGW+ LHPAD AP+TL PA+ Sbjct 1128 LESLILPSRVADYSPAMLDELTSTGEVLWSGSGAISGKDGWVVLHPADLAPITLNSPADT 1187 Query 1193 DFTDAHRAILASLGTGGAYFFRQLTHDGLTEAE---------LKAALWELIWAGRVTGDT 1243 D ++ + IL L GGAYFFRQL D L E + ALWEL+W G + DT Sbjct 1188 DVSELQKRILDLLSGGGAYFFRQLV-DALRTTESAADTVDSAVTTALWELVWLGHIGNDT 1246 Query 1244 FAPVRAVLGGAGTRKRAAPAHGGHRPP-RLSRYRLTHAQARNADP------TVAGRWSAL 1296 AP+RA+L + HR P R+ R R AR + P T +GRW L Sbjct 1247 VAPLRALLSDTTRTTTS------HRSPRRVPRARPYRGMARASTPARTGPATASGRWFQL 1300 Query 1297 PLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYF 1356 P EPD T+RAH A+LLL R+GV+T+ +V +E V GGFA +YKVLS FED GR +RGYF Sbjct 1301 PGIEPDPTIRAHATADLLLERYGVVTRGSVMSENVPGGFALIYKVLSTFEDNGRARRGYF 1360 Query 1357 IESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGT 1416 +++LGGAQF+ VDRLR++ D ++ AV LAA DPANPYGAALPWPAS + + Sbjct 1361 VDTLGGAQFSTPPVVDRLRTFGDSIEGRHTSSAAVTLAACDPANPYGAALPWPASGGEES 1420 Query 1417 --ARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASI 1474 RPGRKAGALVVLV+GEL F+ERGGR++LTFTDD AA+ LA VT+ + + Sbjct 1421 PGHRPGRKAGALVVLVEGELVLFVERGGRTILTFTDDGGTLRLAALSLAQKVTSRAIDKL 1480 Query 1475 LVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 +VE+ DG + + L+ AGF TPRG R R Sbjct 1481 VVEKVDGETI-----HGNDFAPVLVEAGFAATPRGFRLR 1514 >gi|226305586|ref|YP_002765546.1| ATP-dependent helicase [Rhodococcus erythropolis PR4] gi|226184703|dbj|BAH32807.1| putative ATP-dependent helicase [Rhodococcus erythropolis PR4] Length=1533 Score = 1813 bits (4696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 966/1541 (63%), Positives = 1147/1541 (75%), Gaps = 66/1541 (4%) Query 7 SALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSL 66 + L RFS TR+WF F+APTAAQ AW +IA G +TLV+APTGSGKTL+AFLWALD L Sbjct 24 NVLGRFSPATREWFGGAFSAPTAAQLGAWESIASGSHTLVVAPTGSGKTLSAFLWALDQL 83 Query 67 AGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSG 126 A + E AT+VLY+SPLKAL VDVERNLR PL G+T+ A+R GL P+I VGVRSG Sbjct 84 AAKD---EGERATKVLYISPLKALGVDVERNLRAPLVGITQTAKRLGLTPPEITVGVRSG 140 Query 127 DTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHL 186 DT A RR L+ +PPD+LITTPESLFLMLTSAAR+TL GV TVI+DE+HA+A TKRG+HL Sbjct 141 DTSQADRRSLIKRPPDILITTPESLFLMLTSAARETLVGVDTVIVDEVHAVAGTKRGSHL 200 Query 187 ALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPV 246 ALSLERLD L R AQRIGLSATVRP EE+ RFL+G +P IVAPPAAKT +L+V+VPV Sbjct 201 ALSLERLDGLLERP-AQRIGLSATVRPHEEIGRFLAGSAPIRIVAPPAAKTFDLTVRVPV 259 Query 247 PDMANLTDNT--------------IWPDVEARLVDLIESHNSTIVFANSRRLAERLTARL 292 DM L T IWP VE ++VDL+ H S+IVFANSRRLAERLTARL Sbjct 260 EDMTELGIATPADGSESPTPQAGSIWPHVEEQIVDLVLDHRSSIVFANSRRLAERLTARL 319 Query 293 NEIHAARCG--IELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVE 350 NEIHA R G +E P Q+ GAP + +GA P+LARAHHGS+SK+QRA++E Sbjct 320 NEIHAERIGLAVEKTPRPPAQI--GAPTEV-----NYGAEPLLARAHHGSVSKDQRALIE 372 Query 351 EDLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVL 410 +DLK G+L+ VVATSSLELGIDMGAVDLVIQV+APPSVASGLQR+GRAGHQVGEISRGV+ Sbjct 373 DDLKSGRLRCVVATSSLELGIDMGAVDLVIQVEAPPSVASGLQRVGRAGHQVGEISRGVV 432 Query 411 FPKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRR 470 FPKHRTDL+ CAV+V+RM+ G+IE M VPANPLDILAQ TVAA ALEP+D D WF+TVRR Sbjct 433 FPKHRTDLIHCAVTVERMVEGKIEAMAVPANPLDILAQQTVAATALEPIDVDDWFETVRR 492 Query 471 AAPFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGA 530 + FATLPRS +E+TLDLL+G+YPS EFAELRPRLV+DR++ TLT RPG+QRLAVTSGGA Sbjct 493 SGSFATLPRSAYESTLDLLAGRYPSDEFAELRPRLVWDRESNTLTGRPGSQRLAVTSGGA 552 Query 531 IPDRGLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPG 590 IPDRGLF VY+ E+ SRVGELDEEMVYESR GDV +LGATSWRI EIT DRVLV PA G Sbjct 553 IPDRGLFTVYMVGEKASRVGELDEEMVYESRVGDVFALGATSWRIEEITFDRVLVSPAYG 612 Query 591 QPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLD 650 P RLPFW GD GRPAELG ALG E A + RC G D AT NL +L+ Sbjct 613 MPGRLPFWHGDGLGRPAELGQALGQFVRETALGNEADVVERCRVGGLDHNATTNLIQLVG 672 Query 651 DQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEK 710 +Q+ AT VP+D TL+VERFRDELGDWR++LHSPYG RVH P ALA+G RL++RYG+D Sbjct 673 EQKNATGQVPSDRTLVVERFRDELGDWRLVLHSPYGQRVHAPWALAIGARLQERYGVDSS 732 Query 711 PTASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAAR 770 PTASD+GI++RLPDT E+ PPGAELF FD ++I+ +VT EV GSALFASRFRE AAR Sbjct 733 PTASDDGIIIRLPDT----ENEPPGAELFTFDVEDIEDLVTQEVGGSALFASRFRECAAR 788 Query 771 ALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMA 830 ALLLPRR+PG+R+PLWQQRQR+A+LL+VARK+P FPI+LETVRECLQDVYD+P L EL Sbjct 789 ALLLPRRNPGKRAPLWQQRQRSAQLLDVARKFPTFPILLETVRECLQDVYDLPALKELFG 848 Query 831 RIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLG 890 +I +R++R+ E ET PSPFA++LLF YVGAFMYEGD+PLAERRAAAL+LD TLLAELLG Sbjct 849 KIERRQIRIVEVETPSPSPFASALLFNYVGAFMYEGDSPLAERRAAALSLDSTLLAELLG 908 Query 891 RVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVS 950 RVELRELLD VI R+LQ LA DR A+D EGVADLLR+LGPLT +E+ R VS Sbjct 909 RVELRELLDAGVIEQAERELQRLAPDRKAKDLEGVADLLRMLGPLTTEEVTERCLEDPVS 968 Query 951 GWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELL 1010 WLD L A KRAL VS+AG SWW VED RLRDG+G +P+G+PA+F E V PL +LL Sbjct 969 -WLDKLVADKRALHVSYAGESWWTVVEDAARLRDGLGVPLPIGVPAAFIEPVDQPLDDLL 1027 Query 1011 GRYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDA 1070 RYARTH PFT AAARFG+G+ V DVLGRLA + R++ GEF + SA G +WCDA Sbjct 1028 SRYARTHGPFTLTDAAARFGIGVSVARDVLGRLALEKRVLEGEF----RPSATGSEWCDA 1083 Query 1071 EVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPA 1130 EVLR LRRRSLAA R + EPVSTA GRFLP WQHV GIDG+A V+DQLAGV IPA Sbjct 1084 EVLRRLRRRSLAAARQEVEPVSTATLGRFLPGWQHVGGTLRGIDGVATVVDQLAGVPIPA 1143 Query 1131 SAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPA 1190 SA+E L+L R+ DYSPAMLDEL ++G+V WSG+G+ISG DGW+ LHPAD AP+TL PA Sbjct 1144 SALESLILPSRVADYSPAMLDELTSTGEVLWSGSGAISGKDGWVVLHPADLAPITLNSPA 1203 Query 1191 EIDFTDAHRAILASLGTGGAYFFRQLTHDGLTEAE---------LKAALWELIWAGRVTG 1241 + D ++ + IL L GGAYFFRQL D L E + ALWEL+W G + Sbjct 1204 DTDVSELQKRILDLLSGGGAYFFRQLV-DALQTTESAADTVDSAVTTALWELVWLGHIGN 1262 Query 1242 DTFAPVRAVLGGAGTRKRAAPAHGGHRPP-RLSRYRLTHAQARNADP------TVAGRWS 1294 DT AP+RA+L + HR P R+ R R AR + P T +GRW Sbjct 1263 DTVAPLRALLSDTTRTTTS------HRSPRRVPRARPYRGMARASTPARTGPATASGRWF 1316 Query 1295 ALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRG 1354 LP EPD T+RAH A+LLL R+GV+T+ +V +E V GGFA +YKVLS FED GR +RG Sbjct 1317 QLPGIEPDPTIRAHATADLLLERYGVVTRGSVMSENVPGGFALIYKVLSTFEDNGRARRG 1376 Query 1355 YFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSAD 1414 YF+++LGGAQF+ VDRLR++ D ++ AV LAA DPANPYGAALPWPAS + Sbjct 1377 YFVDTLGGAQFSTPPVVDRLRTFGDSIEGRHTSSAAVTLAACDPANPYGAALPWPASGGE 1436 Query 1415 GT--ARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVA 1472 + RPGRKAGALVVLV+GEL F+ERGGR++LTFTDD AA+ LA VT+ V Sbjct 1437 ESPGHRPGRKAGALVVLVEGELVLFVERGGRTILTFTDDGGTLRLAALSLAQKVTSRAVD 1496 Query 1473 SILVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 ++VE+ DG + + L+ AGF TPRG R R Sbjct 1497 KLVVEKVDGETI-----HGNDFAPVLVEAGFAATPRGFRLR 1532 >gi|226365741|ref|YP_002783524.1| ATP-dependent helicase [Rhodococcus opacus B4] gi|226244231|dbj|BAH54579.1| putative ATP-dependent helicase [Rhodococcus opacus B4] Length=1507 Score = 1810 bits (4689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 968/1523 (64%), Positives = 1135/1523 (75%), Gaps = 44/1523 (2%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L RFSA TR+WF F APTAAQ AW +IA +TLV+APTGSGKTL+AFLW+LD LA Sbjct 10 LGRFSAATREWFDGAFPAPTAAQLGAWESIASRAHTLVVAPTGSGKTLSAFLWSLDQLAA 69 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 ++ R T+VLY+SPLKAL VDVERNLR PL G+T+ A+R GL P+I VGVRSGDT Sbjct 70 TDGKDRR---TKVLYISPLKALGVDVERNLRAPLVGITQTAKRLGLTPPEISVGVRSGDT 126 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 P RR L+ PPD+LITTPESLFLMLTSAAR+TLT V TVI+DE+HA+A TKRGAHLAL Sbjct 127 PAGDRRALIKNPPDILITTPESLFLMLTSAARETLTQVDTVIVDEVHAVAGTKRGAHLAL 186 Query 189 SLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVPD 248 SLERLD L AQRIGLSATVRP EE+ RFLSG +P IVAPP+ KT +L+VQVPV D Sbjct 187 SLERLDRLLDTP-AQRIGLSATVRPHEEVGRFLSGSAPIRIVAPPSPKTFDLTVQVPVED 245 Query 249 MANL--------------TDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNE 294 M L +IWP VE ++VDL+ +H S+IVFANSRRLAERLTARLNE Sbjct 246 MTELGLAEPAEGSASATPQAGSIWPHVEEQIVDLVLAHRSSIVFANSRRLAERLTARLNE 305 Query 295 IHAARCGIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLK 354 I+A R G + + G P+ + FGA P+LARAHHGS+SK+QRA++E+DLK Sbjct 306 IYAERAGTAVDKNPKPASQIGTPSEV-----NFGADPLLARAHHGSVSKDQRALIEDDLK 360 Query 355 RGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKH 414 G+L+ VVATSSLELGIDMGAVDLVIQV+APPSVA+GLQR+GRAGHQVGEISRGV+FPKH Sbjct 361 SGRLRCVVATSSLELGIDMGAVDLVIQVEAPPSVANGLQRVGRAGHQVGEISRGVVFPKH 420 Query 415 RTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPF 474 RTDL+ CAV+V+RM+ G+IE + VPANPLDILAQHTVAA ALEP+D D WF+TVRR+ F Sbjct 421 RTDLVHCAVTVERMVTGKIEALAVPANPLDILAQHTVAATALEPIDVDDWFETVRRSGSF 480 Query 475 ATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDR 534 ATLPRS +E+TLDLL+G YPS EFAELRPRLV+DR+ TLT RPGAQRLAVTSGGAIPDR Sbjct 481 ATLPRSAYESTLDLLAGLYPSDEFAELRPRLVWDREANTLTGRPGAQRLAVTSGGAIPDR 540 Query 535 GLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPAR 594 GLF VY+ E+ SRVGELDEEMVYESR DV +LGATSWRI EIT DRVLV PA GQP R Sbjct 541 GLFTVYMVGEKASRVGELDEEMVYESRVTDVFALGATSWRIEEITFDRVLVSPAYGQPGR 600 Query 595 LPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRT 654 LPFW GD GRPAELG ALG E++ T RC G D+ AT NL +L+ +Q+T Sbjct 601 LPFWHGDGLGRPAELGEALGQFLREISLGHETEVQERCRTGGLDENATSNLVQLVAEQKT 660 Query 655 ATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTAS 714 AT VPTD TL+VERFRDELGDWR+ILHSPYG RVH P ALAV RL +R+G+D TAS Sbjct 661 ATGQVPTDRTLVVERFRDELGDWRLILHSPYGQRVHAPWALAVSARLSERFGLDSNATAS 720 Query 715 DNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLL 774 D+GI+VRLPDT +D+PPGA+LF FD DEI+ IVT +V GSALFASRFRE AARALLL Sbjct 721 DDGIIVRLPDT----DDTPPGADLFAFDTDEIEDIVTEQVGGSALFASRFRECAARALLL 776 Query 775 PRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQ 834 PRR PG+R+PLWQQRQR+A+LL+VAR+YP FPI+LETVRECLQDVYD+P L +L ++A+ Sbjct 777 PRRTPGKRAPLWQQRQRSAQLLDVARRYPTFPILLETVRECLQDVYDLPALKDLFRKLAR 836 Query 835 RRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVEL 894 R++R+ E ET PSPFA +LLF YVG FMYEGD+PLAERRAAAL+LD TLLAELLGRVEL Sbjct 837 RQIRIVEVETQSPSPFAGALLFNYVGEFMYEGDSPLAERRAAALSLDSTLLAELLGRVEL 896 Query 895 RELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLD 954 RELLD DVIA +LQ DR A+D EGVADLLRLLGPLT +E+AAR+ + WLD Sbjct 897 RELLDSDVIAHAELELQRQLPDRKAKDLEGVADLLRLLGPLTSEEVAARSTTDPIP-WLD 955 Query 955 GLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYA 1014 L AKRAL VSFAGR WW A+ED RLRDG+G +P+G+PA+F E V DPL +L+ RYA Sbjct 956 ELVRAKRALAVSFAGRDWWTAIEDAARLRDGLGVPLPIGVPAAFIEPVDDPLADLISRYA 1015 Query 1015 RTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLR 1074 RTH PFT AAARFGLG V DVL RLA R+V GEF A GS +WCDAEVLR Sbjct 1016 RTHGPFTIPDAAARFGLGSAVARDVLQRLAQGKRVVEGEFRPGATGS----EWCDAEVLR 1071 Query 1075 ILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIE 1134 LRRRSLAA R + EPVSTA GRFLPAWQHV GIDG+A V++QLAGV +PASA+E Sbjct 1072 RLRRRSLAAARQEVEPVSTATLGRFLPAWQHVGGTLRGIDGVATVVEQLAGVPVPASALE 1131 Query 1135 PLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDF 1194 L+L R+ DYSPAMLDEL ++G+V WSGAGSISG DGW+ LHPAD+AP+TL P E D Sbjct 1132 SLILPSRVADYSPAMLDELTSTGEVLWSGAGSISGKDGWVCLHPADTAPLTLTAPTESDL 1191 Query 1195 TDAHRAILASLGTGGAYFFRQL--THDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLG 1252 TD +L +L GGAYFFRQL T + + L ALW+L+W G + DT APVRA+L Sbjct 1192 TDVQSRVLDTLSGGGAYFFRQLADTLEMSDDTALATALWDLVWLGHIGNDTLAPVRALLS 1251 Query 1253 GAGTRKRAAPAHGGHRPPRLSRYRLTHA-QARNADPTVAGRWSALPLPEPDSTLRAHYQA 1311 R +H R P +R + A R A PTV GRWS LP E D+TLRA A Sbjct 1252 DT---SRTTTSHRVPRRPPRARAYRSLAVPKRTAPPTVGGRWSILPAAESDATLRASATA 1308 Query 1312 ELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTV 1371 ELLL R+GV+T+ +V E V GGFA +YKVL FED GRC+RG+F+E+LGGAQF+ V Sbjct 1309 ELLLERYGVVTRGSVMTENVPGGFALMYKVLGTFEDNGRCRRGHFVETLGGAQFSTPPVV 1368 Query 1372 DRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTA-RPGRKAGALVVLV 1430 DRLRSY D ++ AV LAA+DPANPYGAALPWP D A RPGRKAG LVVLV Sbjct 1369 DRLRSYGDSLEGRHTALPAVTLAASDPANPYGAALPWPKRGDDAPAHRPGRKAGGLVVLV 1428 Query 1431 DGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGR 1490 +GEL F+ERGGR++LTFTDDP AA+ LA +V G + I+VE+ DG + Sbjct 1429 EGELILFVERGGRTVLTFTDDPGVLRTAAVALAGVVKRGGIDKIVVEKVDGDTI-----H 1483 Query 1491 ASAALTALLAAGFVRTPRGLRRR 1513 S L AGF TPRG R R Sbjct 1484 GSDFAPILTEAGFSPTPRGFRLR 1506 >gi|296394818|ref|YP_003659702.1| DEAD/H associated domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181965|gb|ADG98871.1| DEAD/H associated domain protein [Segniliparus rotundus DSM 44985] Length=1495 Score = 1793 bits (4645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 977/1522 (65%), Positives = 1158/1522 (77%), Gaps = 50/1522 (3%) Query 7 SALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSL 66 SA RFS TR W F + T AQ AW +I+ G NTLV+APTGSGKTLA FLWA+D L Sbjct 9 SASERFSPPTRAWLHDAFGSATPAQEMAWESISAGANTLVLAPTGSGKTLAGFLWAVDQL 68 Query 67 AGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSG 126 +SE TRVLYVSPLK+L DV+RNLR PL G+ R A+R G P P++ VG+R+G Sbjct 69 -----LSEPGKGTRVLYVSPLKSLTADVDRNLRAPLVGIARAAQRLGEPEPKVTVGMRTG 123 Query 127 DTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHL 186 DT PA RR+L PPD+L+TTPESLFLMLTSAA+ TL V+TVI+DEIHA+ TKRGAHL Sbjct 124 DTTPAQRRELGRLPPDILLTTPESLFLMLTSAAKDTLRSVRTVIVDEIHAMVNTKRGAHL 183 Query 187 ALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPV 246 ALSLERLD+ + R AQRIGLSAT RPPEE+ARFLSG +PTT+VAPPA K VE+SV VPV Sbjct 184 ALSLERLDN-ALERPAQRIGLSATARPPEEVARFLSGSAPTTVVAPPAHKRVEVSVCVPV 242 Query 247 PDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELAP 306 PDM +L DNTIWP +E R+VDL+ESH STIVF NSRRL+ERLT R+NE+HA R Sbjct 243 PDMTDLEDNTIWPAIEERIVDLVESHRSTIVFVNSRRLSERLTTRINEVHAERAA----- 297 Query 307 DTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSS 366 G G+ A LAR HHGS+SKEQRA++E+DLK G LKAVV T+S Sbjct 298 ---------------GRGEPEAAERALARTHHGSVSKEQRALIEDDLKNGVLKAVVGTAS 342 Query 367 LELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQ 426 LELGIDMG+VDLVIQV++PPSVASGLQR+GRAGHQVGE+SRGV+ PKHRTDLL CAV+ + Sbjct 343 LELGIDMGSVDLVIQVESPPSVASGLQRVGRAGHQVGELSRGVVIPKHRTDLLQCAVAAE 402 Query 427 RMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATL 486 +MLAG E +R ANPLD+LAQHTVAAAA+E LD + WFDTVRR+APF TLPRS +EATL Sbjct 403 QMLAGATEPLRTLANPLDVLAQHTVAAAAMEDLDVEQWFDTVRRSAPFTTLPRSAYEATL 462 Query 487 DLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLATE-- 544 DLLSGKYPSTEFAELRPRLVYDR GTL ARPGAQRLAVTSGGAIPDRG+FAVYLA Sbjct 463 DLLSGKYPSTEFAELRPRLVYDRAEGTLAARPGAQRLAVTSGGAIPDRGMFAVYLAAGDE 522 Query 545 --RPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDD 602 R SRVGELDEEMVYE RPGD I+LGATSWRIT+I DRVLV+PA G+PA+LPFW G+ Sbjct 523 GGRQSRVGELDEEMVYECRPGDFITLGATSWRITDIGPDRVLVLPAFGEPAKLPFWHGEG 582 Query 603 AGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTD 662 GRPAELG ALG + EL+ F RCA +G D AT+NL LLD+Q+ AT +PTD Sbjct 583 PGRPAELGEALGRFSAELSRSRPEEFERRCAAVGLDQNATENLRALLDEQQRATGKLPTD 642 Query 663 STLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRL 722 +TL+VERFRDELGDWRV L SPYG+R+H PLALAVG RLR+ YG++ + TA D+G+VVR+ Sbjct 643 TTLMVERFRDELGDWRVALLSPYGMRMHAPLALAVGARLRELYGVEGQATAFDDGVVVRV 702 Query 723 PDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRR 782 PDT GE S PGAELFVF+ D+IDP+VT +++GSALFA+RFRE AARALLLPRR PG+R Sbjct 703 PDT---GE-SAPGAELFVFEPDDIDPVVTEQISGSALFAARFRECAARALLLPRRAPGKR 758 Query 783 SPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEA 842 +PLW QRQRAA+LL+VARKY DFPIVLET RECLQDV+D+P L LMAR+A+ VR+ Sbjct 759 APLWLQRQRAAQLLDVARKYQDFPIVLETARECLQDVFDLPQLTRLMARVARHEVRLLTV 818 Query 843 ETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDV 902 ET PSPFAA+L+FGYVGAFMYEGD PLAERRAA L+LD LLAELLGR++LRE+LDP V Sbjct 819 ETTAPSPFAAALMFGYVGAFMYEGDVPLAERRAAVLSLDMNLLAELLGRIDLREMLDPQV 878 Query 903 IAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAKRA 962 + T ++LQ LA R ARDAEG+ADLLR+LGPLTEDE+ AR+ +V+ L AA+R Sbjct 879 LEKTFQELQRLAPGRRARDAEGIADLLRVLGPLTEDELRARSEDLDVAAAAAELAAARRT 938 Query 963 LVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTT 1022 + +SFAGR W VAVED GRLRDGVGAAVP G+P +FTE VADPL E+LGRYART PFTT Sbjct 939 VAMSFAGRRWHVAVEDAGRLRDGVGAAVPAGVPGAFTEPVADPLREILGRYARTRGPFTT 998 Query 1023 AAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRSLA 1082 A AA RFGL R + L RLA+ G LVRGEFV A + +QWCD++VLRILRRRSLA Sbjct 999 ADAADRFGLAPRAAEEALRRLAAQGALVRGEFVVADE----AQQWCDSDVLRILRRRSLA 1054 Query 1083 ALRAQAEPVSTAAYGRFLPAWQHVS-AGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAPR 1141 A RAQ EPV+ AAY ++LPAWQ V+ SG DG+ AV++QLAG +PASA+EPLVL R Sbjct 1055 AARAQVEPVTAAAYAQYLPAWQRVADPSCSGTDGVLAVVEQLAGAAVPASALEPLVLGQR 1114 Query 1142 IRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRAI 1201 +RDY P MLDEL A+G++ WSGAG++ G+DGW+ALH AD A ++LA P E + T+AHRAI Sbjct 1115 VRDYRPEMLDELFAAGELLWSGAGTMHGNDGWVALHLADCAALSLAPPPERELTEAHRAI 1174 Query 1202 LASL----GTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTR 1257 L +L GG +FFRQL DG TE+ + ALW+L+WAG+VT DTFAPVRA+L G+ Sbjct 1175 LDALGGEGRGGGGFFFRQLV-DGATESAAREALWDLVWAGKVTNDTFAPVRALLAGSARS 1233 Query 1258 KRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNR 1317 + A AH R ++R + AR ADP V+GRWS+LP PEP+STLRAH+ AE LL R Sbjct 1234 RSAPAAHRQRRRGSPVQFRASRGPARAADPVVSGRWSSLPQPEPNSTLRAHFWAEQLLAR 1293 Query 1318 HGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSY 1377 HGV+TK AV AEGV GGFA +YK+L+A ED+G CQRGYF+ESLGGAQF + VDRLRSY Sbjct 1294 HGVVTKGAVGAEGVPGGFAAVYKILTALEDSGLCQRGYFVESLGGAQFTSPAAVDRLRSY 1353 Query 1378 LDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADG----TARPGRKAGALVVLVDGE 1433 + + A VLAA DPANP+GAALPWPA A + RPGR+ GA+VVL +GE Sbjct 1354 QELATAREKPRVAHVLAATDPANPFGAALPWPARGAADDSPPSHRPGRRPGAIVVLHEGE 1413 Query 1434 LAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPG--GRA 1491 L W+LERGGRSLL F + AAA L LV +GR+A ++VER DG L A Sbjct 1414 LVWYLERGGRSLLVFAPEDGPQRAAAEALVALVRSGRLAGLVVERVDGASSLGADLPAAA 1473 Query 1492 SAALTALLAAGFVRTPRGLRRR 1513 A ALL AGF RTPRGLR R Sbjct 1474 QRAARALLEAGFARTPRGLRLR 1495 >gi|148273832|ref|YP_001223393.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831762|emb|CAN02731.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=1606 Score = 1701 bits (4404), Expect = 0.0, Method: Compositional matrix adjust. Identities = 941/1623 (58%), Positives = 1113/1623 (69%), Gaps = 140/1623 (8%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L+RFS TR+WF F PTAAQ AW A+ G + LV+APTGSGKTLAAFLW++D LA Sbjct 5 LARFSPATREWFQGAFPGPTAAQTGAWEAVQKGSHALVVAPTGSGKTLAAFLWSIDRLA- 63 Query 69 SEPMSERPAA-TRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGD 127 S P E P TRVLY+SPLKALAVDVERNLR+PL G+ + A+R G P++ VGVRSGD Sbjct 64 SRPAPEDPMRRTRVLYISPLKALAVDVERNLRSPLVGIVQTAKRLGAEPPEVTVGVRSGD 123 Query 128 TPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLA 187 TP RR L PPD+LITTPESLFLMLTSAAR+TL GV+TVIIDE+HA+AATKRG+HLA Sbjct 124 TPAGDRRSLAKTPPDILITTPESLFLMLTSAARETLAGVETVIIDEVHAVAATKRGSHLA 183 Query 188 LSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVP 247 LSLERLD L + AQRIGLSATVRPPEE+ARFL G+SP +IV+P K +L V VPV Sbjct 184 LSLERLDALLEKP-AQRIGLSATVRPPEEVARFLGGRSPVSIVSPKNTKEFDLRVIVPVD 242 Query 248 DMANL----------------TDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTAR 291 DM L +IWP VE +VDL+ H S+IVF NSRRLAERLTAR Sbjct 243 DMTELGTTAPLEGSAAQGDQPQQGSIWPHVEKGIVDLVLQHTSSIVFTNSRRLAERLTAR 302 Query 292 LNEIHAARCGIELAPDTNQQVAGGA----------------------------------- 316 LNEI+A R V GG Sbjct 303 LNEIYAVRIEEGRIDAEGNAVVGGTVAGSATADAVPVLAGASAGSGSSRPADATAFSATR 362 Query 317 ------PAHIMG-SGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLEL 369 PA +M +G T GA PVLA+AHHGS+SKEQRA++E+DLK G+L+ VVATSSLEL Sbjct 363 RTAARPPAEVMAQAGSTEGADPVLAKAHHGSVSKEQRALIEDDLKSGRLRCVVATSSLEL 422 Query 370 GIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRML 429 GIDMG VDLV+QV+APPSVASGLQR+GRAGHQVGE+SRGV+FPKHR DL+ AV+ +RM Sbjct 423 GIDMGDVDLVVQVEAPPSVASGLQRVGRAGHQVGEVSRGVIFPKHRADLIHSAVAAERMA 482 Query 430 AGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDLL 489 +G+IE++RVPANPLD+LAQ TVAA ALEPL + WFD VRR+APFATLPRS +EATLDLL Sbjct 483 SGQIESLRVPANPLDVLAQQTVAAVALEPLGVEEWFDIVRRSAPFATLPRSAYEATLDLL 542 Query 490 SGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLATERPSRV 549 SG+YPS EFAELRPR+V+DRD GT+ RPGAQRLAVTSGG IPDRGLF V++ E+ SRV Sbjct 543 SGRYPSDEFAELRPRIVWDRDEGTIEGRPGAQRLAVTSGGTIPDRGLFGVFMVGEKASRV 602 Query 550 GELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDAGRPAEL 609 GELDEEMVYESR GDV +LGATSWRI EITHDRVLV PA G+P +LPFW+GD GRP EL Sbjct 603 GELDEEMVYESRVGDVFALGATSWRIQEITHDRVLVTPAFGEPGKLPFWKGDGLGRPLEL 662 Query 610 GAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDSTLLVER 669 G A+GA EL+ R +G DD A +NL LDDQ+ AT VP D TL+VER Sbjct 663 GRAIGAFVRELSGSAVDDARARAGRVGLDDRAVNNLLAFLDDQKKATGHVPNDRTLVVER 722 Query 670 FRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPDTVSAG 729 FRDELGDWRV+LHSPYG++VH P ALAVG R+ + YGID A+D+GIVVR+P+T Sbjct 723 FRDELGDWRVVLHSPYGMQVHAPWALAVGARVTELYGIDGATMANDDGIVVRIPET---- 778 Query 730 EDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSPLWQQR 789 + PPGA+LFVF+ DE+D IVT EV GSALFASRFRE AARALLLPR +PGRRSPLWQQR Sbjct 779 DGEPPGADLFVFEPDELDAIVTREVGGSALFASRFRECAARALLLPRYNPGRRSPLWQQR 838 Query 790 QRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEAETAKPSP 849 QRA++LL+VARK+P FPIVLETVRE LQDVYD+P L L I RR+++ E T SP Sbjct 839 QRASQLLDVARKFPAFPIVLETVREVLQDVYDLPALTSLAKDIEARRIKIVETTTEDASP 898 Query 850 FAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDVIAATSRQ 909 FA SLLF YVGAFMYEGD+PLAERRAAAL+LD LL+ELLGR ELRELLDP VIA T + Sbjct 899 FARSLLFSYVGAFMYEGDSPLAERRAAALSLDAGLLSELLGRAELRELLDPAVIARTELE 958 Query 910 LQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSG----WLDGLRAAKRALVV 965 LQ LA DR A+ EGVADLLR+LGPL +E+AAR P+ +G LD L A +RAL V Sbjct 959 LQRLAPDRRAKGLEGVADLLRILGPLDAEEVAARL-EPDEAGSAADHLDALVAGRRALRV 1017 Query 966 SFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAAA 1025 SF G+ A+ED RLRD +G +P+G P +F E VADPLG+L+GRYARTH PFT A A Sbjct 1018 SFGGQPRVAAIEDASRLRDALGVPLPIGTPMAFVEPVADPLGDLVGRYARTHGPFTIADA 1077 Query 1026 AARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRSLAALR 1085 A GLG V AD L RL + R+V GEF A GS +WCD EVLR LR RSLAALR Sbjct 1078 ATGIGLGSAVIADTLARLGAQRRVVEGEFRPGASGS----EWCDVEVLRRLRSRSLAALR 1133 Query 1086 AQAEPVSTAAYGRFLPAWQHVSA-----GNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP 1140 ++ EPV AAY RFLPAWQHV+ G G+DG+ VI+QLAG +PASA E LVL Sbjct 1134 SEVEPVERAAYARFLPAWQHVAGADRERGLRGVDGVLQVIEQLAGAPVPASAWETLVLPA 1193 Query 1141 RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA 1200 R+RDY+PAMLDEL ++G+V WSGAG+++G+DGW++LH AD +TL EP D + R Sbjct 1194 RVRDYTPAMLDELTSTGEVIWSGAGTLAGADGWVSLHLADQVALTLPEPDAHDTDELQRE 1253 Query 1201 ILASLGTGGAYFFRQLTH--DGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRK 1258 IL +LGTGG YFFRQL+ + L ALW+L+WAG VT DT +P+RA+L G T Sbjct 1254 ILTTLGTGGGYFFRQLSDAVGSTDDTALVTALWDLVWAGLVTNDTLSPLRALLAGGSTAH 1313 Query 1259 RAAPAHGGHRPPRLSRYR-----LTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAEL 1313 + R PR YR R PT AGRWS +PL E D+T+RA AEL Sbjct 1314 KTP-----QRAPRGRMYRGGRMPRPDMPTRTGPPTAAGRWSIVPLAETDATVRAAGTAEL 1368 Query 1314 LLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDR 1373 LL R+GV+T+ +V E V GGFA YKVL+ FED GR +RGYFIE+LG AQF+ TVDR Sbjct 1369 LLERYGVVTRGSVMTERVPGGFALTYKVLAGFEDTGRARRGYFIETLGAAQFSTGGTVDR 1428 Query 1374 LRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWP------------------------ 1409 LR + D + A+ LAA DPAN YGAALPWP Sbjct 1429 LRGFTRDPDAGERPLVALTLAATDPANAYGAALPWPRLDGSGGGSEAGPDASDGGVPGAG 1488 Query 1410 -----ASSADGTA-------------RPGRKAGALVVLVDGELAWFLERGGRSLLTFTDD 1451 ASSA + R GRKAGALVVLVDGEL ++ERGG+++L F DD Sbjct 1489 DPAGDASSAIAESGSVDARGERPTGHRAGRKAGALVVLVDGELVLYVERGGKTVLLFDDD 1548 Query 1452 PEANHAAAIGLADLVTAGRVASILVERADGMPVL-QPGGRASAALTALLAAGFVRTPRGL 1510 AAA L +V G VA + +E+ +G +L P G TAL GF TPRGL Sbjct 1549 EAVIRAAAESLGGIVRRGGVAKLAIEKVNGAFILGTPLG------TALQEHGFSATPRGL 1602 Query 1511 RRR 1513 R R Sbjct 1603 RMR 1605 >gi|262201745|ref|YP_003272953.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262085092|gb|ACY21060.1| DEAD/H associated domain protein [Gordonia bronchialis DSM 43247] Length=1544 Score = 1695 bits (4390), Expect = 0.0, Method: Compositional matrix adjust. Identities = 927/1551 (60%), Positives = 1108/1551 (72%), Gaps = 65/1551 (4%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L RF+A TR WFT F APT AQ AW +IADG+NTLVIAPTGSGKTL+AFLWALD LA Sbjct 8 LQRFTAPTRRWFTGAFTAPTPAQVGAWNSIADGENTLVIAPTGSGKTLSAFLWALDRLAA 67 Query 69 SEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDT 128 + +R A TRVLY+SPLKALAVDVERNLR PL G+TR A+ G P P I VG+RSGDT Sbjct 68 T---PDRAAGTRVLYISPLKALAVDVERNLRAPLTGITRAAQELGEPEPNITVGLRSGDT 124 Query 129 PPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLAL 188 A RR L PPD+LITTPESL+LMLTS+ R+TL V VI+DE+HA+A TKRG HLAL Sbjct 125 AAAARRLLAKAPPDILITTPESLYLMLTSSVRETLRTVDAVIVDEVHAVAGTKRGTHLAL 184 Query 189 SLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVPD 248 SLERLDDL AQRIGLSATVRPPE +A FL+G P +V PPAAKT +L V VPVPD Sbjct 185 SLERLDDLLETP-AQRIGLSATVRPPEVVADFLAGSRPCRVVRPPAAKTFDLRVDVPVPD 243 Query 249 MANL-----------------TDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTAR 291 MAN+ T ++WP VEA +VD IE++ +TIVFANSRRLAERLTAR Sbjct 244 MANIPPPAEDTADDLDDAFSPTAGSLWPHVEASIVDAIEANRATIVFANSRRLAERLTAR 303 Query 292 LNEIHAARCGIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEE 351 LNEI+A R G+ + N V GGAPAHIM SG GAP LARAHHGS+SKEQRA +E+ Sbjct 304 LNEIYAQRSGVPVQAAANPGVPGGAPAHIMASGAAGGAPTTLARAHHGSVSKEQRAEIED 363 Query 352 DLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLF 411 DLK G+L+ VVATSSLELGIDMGAVDLVIQV+APPSVASGLQRIGRAGHQVGEIS+GVL+ Sbjct 364 DLKSGRLRCVVATSSLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEISQGVLY 423 Query 412 PKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRA 471 PKHRTDL+ C V+V+RM AG IE +R+P NPLD+LAQHT+AAAA++ LD D WFD +RRA Sbjct 424 PKHRTDLVHCTVAVERMRAGAIEELRIPKNPLDVLAQHTIAAAAMDDLDVDQWFDVIRRA 483 Query 472 APFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAI 531 AP+ L R ++ +TLDL+SG++PS EFAELRPR+ +DRD TL R GAQRLAVTSGG I Sbjct 484 APYRELAREVYVSTLDLISGRFPSDEFAELRPRVTWDRDANTLVGRRGAQRLAVTSGGTI 543 Query 532 PDRGLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQ 591 PDRGLF V++ E+ +RVGELDEEMVYESR GDV +LGATSWRI +ITHDRVLV PA GQ Sbjct 544 PDRGLFGVFMVGEKSARVGELDEEMVYESRVGDVFALGATSWRIEDITHDRVLVTPAFGQ 603 Query 592 PARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDD 651 P RLPFW GD GRPAELGAA+G TG +A D + LG +YA DNL L+ + Sbjct 604 PGRLPFWVGDAVGRPAELGAAIGKFTGAIA--DPQELDRQATELGLTEYARDNLAALIAE 661 Query 652 QRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKP 711 QR AT +PTD TL++ERFRDELGDWRVILHSPYGLRVH P A A+ RL++ G+ Sbjct 662 QREATGHLPTDRTLVIERFRDELGDWRVILHSPYGLRVHAPWASAISARLQETLGLAGAT 721 Query 712 TASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARA 771 TASD+GI+VRLPDT ED PPGA +FV D D+I+ +VT +A S++FASRFRE AARA Sbjct 722 TASDDGIIVRLPDT----EDEPPGAAVFVIDPDDIEQMVTDALAESSMFASRFRECAARA 777 Query 772 LLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMAR 831 LLLPRR PGRR+PLWQQRQR+A+LL VA ++PDFPIVLE VRECLQDVYD+P L +L+ R Sbjct 778 LLLPRRDPGRRAPLWQQRQRSAQLLSVASQFPDFPIVLEAVRECLQDVYDLPALTDLLRR 837 Query 832 IAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGR 891 I+ RRVR+ E ET +PSPFAASLLFGYVGAFMY D PLAERRAAAL+LD +LLA+LLGR Sbjct 838 ISTRRVRLVETETPEPSPFAASLLFGYVGAFMYSDDAPLAERRAAALSLDTSLLAQLLGR 897 Query 892 VELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSG 951 V+LRELLDP VIAA +LQ L R ARDAE + DLLR LGPLT +E+AAR + + Sbjct 898 VDLRELLDPGVIAAVIARLQRLDPSRQARDAEDIVDLLRWLGPLTTEEVAARYQGDDAAA 957 Query 952 WLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLG 1011 L L A + V+ GR W AVED RLRD +G P+G+PA++T+ V DP+ +L+ Sbjct 958 VLADLHRAGPIISVTHQGRPLWAAVEDTARLRDALGVPAPLGVPAAYTDPVPDPVTDLVH 1017 Query 1012 RYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFV-AAAKGSAGGEQWCDA 1070 RYARTH PFT AA G+ + V D L RLA+ ++V G+F+ AAA + QWC A Sbjct 1018 RYARTHGPFTLTEAAESLGMAVAVVRDTLVRLAAQRKVVEGDFLPAAADDAHPTTQWCHA 1077 Query 1071 EVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGN--SGIDGLAAVIDQLAGVRI 1128 +VL +RR SLAA RA PV A GRFL W HV+ SG+DG+A V+DQLAG + Sbjct 1078 DVLGQIRRGSLAASRADVAPVDAATLGRFLGGWHHVTPAERLSGVDGVATVLDQLAGYPL 1137 Query 1129 PASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAE 1188 PASA E L+L R+ DYSPAMLDELL+SG+V WSG G I G+DG IA HPAD P+TL Sbjct 1138 PASAWESLILPARVADYSPAMLDELLSSGEVVWSGHGRIGGADGQIAFHPADLLPVTLEP 1197 Query 1189 PAEIDFTDAHRAILASLGTGGAYFFRQLTHDGLTE------------AELKAALWELIWA 1236 P EID T H A+LA L GGA F QLT D +E A++++ALW+L+WA Sbjct 1198 PDEIDLTAIHAALLAVLTPGGALRFAQLT-DAASETLSAAGAAVPSTADIESALWDLVWA 1256 Query 1237 GRVTGDTFAPVRAVLG------GAGTRKRAAPAHGGH------RPPRLS-RYRLTHAQAR 1283 G+V D+FA VRA+L G G R PAH G RP RLS R+ HA R Sbjct 1257 GQVANDSFAAVRALLRPDRRSVGRGAGSRPTPAHRGRARAPRIRPQRLSTRFLSEHATGR 1316 Query 1284 NADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLS 1343 + PT GRW L + D T E LL R+GV+T+ +VA EGV GGFA +YK LS Sbjct 1317 PSSPTTTGRWFLLARDDLDPTAATQALCEQLLVRYGVVTRGSVATEGVPGGFARVYKALS 1376 Query 1344 AFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYG 1403 FED+G +RGY+++ LGGAQFA +TVD LR + D P AVVLAA DPANPYG Sbjct 1377 VFEDSGVVRRGYYVDGLGGAQFARPTTVDELRRHAVDADSAAP---AVVLAATDPANPYG 1433 Query 1404 AALPWPASSA-DGTARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGL 1462 A L WP +SA D RPGRKAGALVVL+ GE F+ERGG+++LTF+ D + AA L Sbjct 1434 AVLDWPETSAEDSGHRPGRKAGALVVLLAGEPVLFVERGGKTVLTFSSDADRLRTAAGAL 1493 Query 1463 ADLVTAGRVASILVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 AD V AGR++ + +++ D PVL S L+ AGF TPRG+R R Sbjct 1494 ADAVRAGRLSRLTIDQVDSRPVL-----GSEMAPVLVDAGFATTPRGVRLR 1539 >gi|325962095|ref|YP_004240001.1| ATP dependent helicase, Lhr family [Arthrobacter phenanthrenivorans Sphe3] gi|323468182|gb|ADX71867.1| ATP dependent helicase, Lhr family [Arthrobacter phenanthrenivorans Sphe3] Length=1664 Score = 1686 bits (4365), Expect = 0.0, Method: Compositional matrix adjust. Identities = 952/1669 (58%), Positives = 1149/1669 (69%), Gaps = 170/1669 (10%) Query 5 QPSA-LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWAL 63 QP+ +++FS TRDWF F PT AQ AW AI+ G + LV+APTGSGKTLAAFLWAL Sbjct 5 QPAGPMAQFSRPTRDWFLGAFTEPTPAQEGAWRAISSGAHALVVAPTGSGKTLAAFLWAL 64 Query 64 DSLAGS--------EPMSERPA----------ATRVLYVSPLKALAVDVERNLRTPLAGL 105 D L S +P S PA ATRVLY+SPLKAL VDVERNLR+PL G+ Sbjct 65 DRLLISAAEAPDVQQPDSNAPAKGRRVRRPKRATRVLYISPLKALGVDVERNLRSPLIGI 124 Query 106 TRLAERQGLPAPQIRVGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTG 165 T+ A+R GLPAP I VGVRSGDT A RR L+S PPD+LITTPESLFLMLTS AR+TL G Sbjct 125 TQTAKRLGLPAPLITVGVRSGDTTAADRRALLSNPPDILITTPESLFLMLTSKARETLAG 184 Query 166 VQTVIIDEIHAIAATKRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQS 225 V T+IIDE+HA+A TKRGAHLA+SLERLD L AQRIGLSATV P + +A+FL+G + Sbjct 185 VDTIIIDEVHAVAGTKRGAHLAVSLERLDALLPAP-AQRIGLSATVEPKDLVAQFLAGSA 243 Query 226 PTTIVAPPAAKTVELSVQVPVPDMANLT----------------DNTIWPDVEARLVDLI 269 P IVAPPA K +L+V VPV DM++L +IWP VE ++VDL+ Sbjct 244 PVEIVAPPAKKNWDLTVSVPVEDMSDLQGAAGAFDSGPASGLQPQASIWPHVEEKIVDLV 303 Query 270 ESHNSTIVFANSRRLAERLTARLNEIHAARCGIELAPDTNQQVAGG-------------- 315 ++ STIVFANSRRL+ERLTARLNEI+A R + + + V GG Sbjct 304 LANQSTIVFANSRRLSERLTARLNEIYAERQLVAVGGGWDDPVPGGLEAAAAPGPGVPPP 363 Query 316 -------APAHIMG-SGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSL 367 PAH+M +G + GA PVLARAHHGS+SK+QRA++E+DLK G+L+ VVATSSL Sbjct 364 GVPASTATPAHMMAQAGSSAGADPVLARAHHGSVSKDQRALIEDDLKSGRLRCVVATSSL 423 Query 368 ELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQR 427 ELGIDMGAVDLV+QV++PPSVASGLQR+GRAGHQVGE+S+GVLFPKHR DL+ A++V+R Sbjct 424 ELGIDMGAVDLVVQVESPPSVASGLQRVGRAGHQVGEVSQGVLFPKHRADLVHTAITVER 483 Query 428 MLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLD 487 ML G+IE + +PANPLDILAQ TVAA AL +D + WF TVRR+APFA+LPRS FEATLD Sbjct 484 MLDGKIERLSIPANPLDILAQQTVAATALGSIDVEEWFATVRRSAPFASLPRSAFEATLD 543 Query 488 LLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYL------ 541 LL+G+YPS EFAELRPR+++DR+ GT+ RPGAQRLAVTSGG IPDRGLF VY+ Sbjct 544 LLAGRYPSDEFAELRPRIIWDRNAGTIEGRPGAQRLAVTSGGTIPDRGLFGVYIIGTEVE 603 Query 542 ------ATERPS-------RVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPA 588 A +PS RVGELDEEMVYESR GDV +LGATSW+I +ITHDRVLV PA Sbjct 604 GSSSPSADGKPSPAPKGGRRVGELDEEMVYESRVGDVFALGATSWKIEDITHDRVLVSPA 663 Query 589 PGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRL 648 GQP +LPFW+GD GRP +LG ALGA EL+A D RC G D++A +NL + Sbjct 664 FGQPGKLPFWKGDSLGRPVDLGRALGAFVRELSASDVGPATERCKASGLDEFAANNLIQY 723 Query 649 LDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGID 708 L +Q+ AT VVP+D+TL+VERF DELGDWRVILHSP+G+ VH P ALAVG+RL RYG+D Sbjct 724 LSEQKLATEVVPSDTTLVVERFHDELGDWRVILHSPFGMPVHAPWALAVGQRLHQRYGLD 783 Query 709 EKPTASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESA 768 A+D+GIV+R+P ED PPGAELF+FD +E++ IVT EV GSALFASRFRE A Sbjct 784 GSAMAADDGIVLRVPMM----EDEPPGAELFLFDPEELEQIVTAEVGGSALFASRFRECA 839 Query 769 ARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVEL 828 ARALLLPR+ PG+R PLWQQRQR+A+LL+VARKYP FPIVLETVRECLQDVYD+P L ++ Sbjct 840 ARALLLPRQTPGKRQPLWQQRQRSAQLLDVARKYPTFPIVLETVRECLQDVYDLPALKDI 899 Query 829 MARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAEL 888 A + +R +R+ + T++PSPFA SLLFGYV F+YEGD+PLAERRAAALALD TLL EL Sbjct 900 AASVERRELRIVQTTTSQPSPFAKSLLFGYVAQFLYEGDSPLAERRAAALALDSTLLNEL 959 Query 889 LGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAAR---AG 945 LGRVELRELLD VI AT R+LQ LA DR R EGVADLLRLLGPL +E+A R A Sbjct 960 LGRVELRELLDAKVIEATERELQRLAPDRRVRGVEGVADLLRLLGPLAPEEVAERLEPAA 1019 Query 946 APE----------------------VSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLR 983 APE L L+ A RA+ V+ G + AVED RLR Sbjct 1020 APEPGPVVEPVETEPVHETHAEPAQAEAHLVALQRANRAIKVNIGGAERFAAVEDAARLR 1079 Query 984 DGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRL 1043 D +G +P+G+P +F E VADPL +L+ RYARTH PFT A AAAR GLG+ V L RL Sbjct 1080 DAIGVPLPMGVPLAFIEPVADPLDDLVSRYARTHGPFTAAEAAARLGLGVAVVGTALKRL 1139 Query 1044 ASDGRLVRGEF------------------VAAAKGSAG------GEQWCDAEVLRILRRR 1079 A+DGR+V GEF AAA+ A +WCDAEVLR LRRR Sbjct 1140 AADGRVVEGEFRPHPAPPETGSSAEDGTQPAAAEPPANLPQHALASEWCDAEVLRKLRRR 1199 Query 1080 SLAALRAQAEPVSTAAYGRFLPAWQHVSAGNS--------GIDGLAAVIDQLAGVRIPAS 1131 SLAALRA+ EPV AAYGRFLPAWQHV G+DG+ +DQL+GV IPAS Sbjct 1200 SLAALRAEVEPVDAAAYGRFLPAWQHVRTPGGGRGQPSLRGLDGIITAVDQLSGVPIPAS 1259 Query 1132 AIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAE 1191 A EPLVLA R+ +Y PAMLDEL+A+G+V WSGAG++ G+DGWI+LH ADSA +TL + Sbjct 1260 AWEPLVLAGRVSNYQPAMLDELMAAGEVLWSGAGALPGNDGWISLHLADSAELTLNPAID 1319 Query 1192 IDFTDAHRAILASLGT-GGAYFFRQLTH------DGLTEAELKAALWELIWAGRVTGDTF 1244 + DA +L L T GG YFFRQLT L++ E+ ALW+L WAGR+TGDTF Sbjct 1320 YEPGDAQERLLDHLRTNGGGYFFRQLTEVAGGMDSVLSDQEVVTALWDLAWAGRITGDTF 1379 Query 1245 APVRAVLGGAGTRKRAAPAHGGHRPPRLSRYRLTHAQ------------------ARNAD 1286 APVRA++ G T R R PRLSR +H A Sbjct 1380 APVRALIAGGHTAHRQVARAPRARAPRLSRLGRSHGTGLMGSPGLAGGRYGASGGAAATP 1439 Query 1287 PTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFE 1346 P AGRWSALP PE D T+ A AELLL+R+GV+T+ +V AE + GGF +YKVL+ E Sbjct 1440 PMAAGRWSALPQPELDPTIHARATAELLLDRYGVVTRGSVMAEQILGGFGLMYKVLARLE 1499 Query 1347 DAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAAL 1406 +AGRC+RGYFIE LG AQFAV +TVDRLRSY + +P+ A+ LAA DPANPYGAAL Sbjct 1500 EAGRCRRGYFIEHLGAAQFAVPATVDRLRSYSEDAQLAKPEPVALALAATDPANPYGAAL 1559 Query 1407 PWPASSAD-GTA-RPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLAD 1464 PWPA D GT RPGRKAGALVVLVDG L ++ERGG++LL F+DD AA L Sbjct 1560 PWPALQDDAGTGHRPGRKAGALVVLVDGALVLYVERGGKTLLAFSDDQAVLAAAGTALVG 1619 Query 1465 LVTAGRVASILVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 +VT G V +++E+ +G +L + AL +AG TP+GLR R Sbjct 1620 VVTRGAVDKLIMEKVNGHGILD-----TPVAAALSSAGAYSTPKGLRIR 1663 >gi|170780852|ref|YP_001709184.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169155420|emb|CAQ00527.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length=1867 Score = 1686 bits (4365), Expect = 0.0, Method: Compositional matrix adjust. Identities = 934/1621 (58%), Positives = 1110/1621 (69%), Gaps = 138/1621 (8%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L+RFS TR+WF F PTAAQ AW A+ G + LV+APTGSGKTLAAFLW++D LA Sbjct 268 LARFSPATREWFQGAFPGPTAAQTGAWEAVQKGSHALVVAPTGSGKTLAAFLWSIDRLA- 326 Query 69 SEPMSERPAA-TRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGD 127 S P E P TRVLY+SPLKALAVDVERNLR+PL G+ + A+R G P++ VGVRSGD Sbjct 327 SRPAPEDPMRRTRVLYISPLKALAVDVERNLRSPLVGIVQTAKRLGAEPPEVTVGVRSGD 386 Query 128 TPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLA 187 TP A RR L PPD+LITTPESLFLMLTSAAR+TL GV+TVI+DE+HA+AATKRG+HLA Sbjct 387 TPAADRRSLAKTPPDILITTPESLFLMLTSAARETLAGVETVIVDEVHAVAATKRGSHLA 446 Query 188 LSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVP 247 LSLERLD L + AQRIGLSATVRPPEE+ARFL G+SP +IV+P K L V VPV Sbjct 447 LSLERLDALLEKP-AQRIGLSATVRPPEEVARFLGGRSPVSIVSPKNTKEFNLRVIVPVD 505 Query 248 DMANL----------------TDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTAR 291 DM L +IWP VE +VDL+ H S+IVF NSRRLAERLTAR Sbjct 506 DMTELGTTAPLEGSAAQGDQPQQGSIWPHVEEGIVDLVLQHTSSIVFTNSRRLAERLTAR 565 Query 292 LNEIHAARCG---------IELAPDT-------------------------NQQVAGGAP 317 LNEI+A R + A D ++ A P Sbjct 566 LNEIYAVRIEEGRIDAEGRVVAASDAVPVLAGAAAGSGAGPGSARSTDFSATRRTAPRPP 625 Query 318 AHIMG-SGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLELGIDMGAV 376 A +M +G GA PVLA+AHHG +SKEQRA +E+DLK G+L+ VVATSSLELGIDMG V Sbjct 626 AELMAQAGSMEGADPVLAKAHHGFVSKEQRARIEDDLKSGRLRCVVATSSLELGIDMGDV 685 Query 377 DLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRMLAGEIETM 436 DLV+QV+APPSVASGLQR+GRAGHQVGE+SRGV+FPKHR DL+ AV+ +RM +G+IE++ Sbjct 686 DLVVQVEAPPSVASGLQRVGRAGHQVGEVSRGVIFPKHRADLIHSAVAAERMASGQIESL 745 Query 437 RVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDLLSGKYPST 496 RVPANPLD+LAQ TVAA ALEPL + WFD VR +APFATLPRS +EATLDLLSG+YPS Sbjct 746 RVPANPLDVLAQQTVAAVALEPLGVEEWFDIVRGSAPFATLPRSAYEATLDLLSGRYPSD 805 Query 497 EFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLATERPSRVGELDEEM 556 EFAELRPR+V+DRD GT+ RPGAQRLAVTSGG IPDRGLF V++ E+ SRVGELDEEM Sbjct 806 EFAELRPRIVWDRDEGTIEGRPGAQRLAVTSGGTIPDRGLFGVFMVGEKASRVGELDEEM 865 Query 557 VYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDAGRPAELGAALGAL 616 VYESR GDV +LGATSWRI EITHDRVLV PA G+P +LPFW+GD GRP ELG A+GA Sbjct 866 VYESRVGDVFALGATSWRIQEITHDRVLVTPAFGEPGKLPFWKGDGLGRPLELGRAIGAF 925 Query 617 TGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDSTLLVERFRDELGD 676 EL+ R +G DD A +NL LDDQ+ AT VP D TL+VERFRDELGD Sbjct 926 VRELSGSAVDDARARAGRVGLDDRAVNNLLAFLDDQKKATGHVPNDRTLVVERFRDELGD 985 Query 677 WRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPDTVSAGEDSPPGA 736 WRV+LHSPYG++VH P ALAVG R+ + YGID A+D+GIVVR+P+T + PPGA Sbjct 986 WRVVLHSPYGMQVHAPWALAVGARVTELYGIDGATMANDDGIVVRIPET----DGEPPGA 1041 Query 737 ELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSPLWQQRQRAARLL 796 +LFVF+ DE+D IVT EV GSALFASRFRE AARALLLPR +PGRRSPLWQQRQRA++LL Sbjct 1042 DLFVFEPDELDAIVTREVGGSALFASRFRECAARALLLPRYNPGRRSPLWQQRQRASQLL 1101 Query 797 EVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEAETAKPSPFAASLLF 856 +VARK+P FPIVLETVRE LQDVYD+P L L I RR+++ E T SPFA SLLF Sbjct 1102 DVARKFPAFPIVLETVREVLQDVYDLPALTSLAKDIEARRIKIVETTTEDASPFARSLLF 1161 Query 857 GYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDVIAATSRQLQHLAAD 916 YVGAFMYEGD+PLAERRAAAL+LD LL+ELLGR ELRELLDP VIA T +LQ A D Sbjct 1162 SYVGAFMYEGDSPLAERRAAALSLDAGLLSELLGRAELRELLDPAVIARTELELQRTAPD 1221 Query 917 RVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSG----WLDGLRAAKRALVVSFAGRSW 972 R A+ EGVADLLR+LGPL +E+A R PE +G LD L A KRAL VSF G+ Sbjct 1222 RRAKGLEGVADLLRILGPLDAEEVAVRL-EPEEAGSAADHLDALVAGKRALRVSFGGQPR 1280 Query 973 WVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAAAAARFGLG 1032 A+ED RLRD +G +P+G P +F E VADPLG+L+GRYARTH PFT A AA GLG Sbjct 1281 VAAIEDASRLRDALGVPLPIGTPLAFVEPVADPLGDLVGRYARTHGPFTIADAATGIGLG 1340 Query 1033 LRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRSLAALRAQAEPVS 1092 V AD L RL + R+V GEF A GS +WCD EVLR LR RSLAALR++ EPV Sbjct 1341 SAVIADTLARLGAQRRVVEGEFRPGASGS----EWCDVEVLRRLRSRSLAALRSEVEPVE 1396 Query 1093 TAAYGRFLPAWQHVSA-----GNSGIDGLAAVIDQLAGVRIPASAIEPLVLAPRIRDYSP 1147 AA+ RFLPAWQHV+ G G+DG+ VI+QLAG +PASA E LVL R+RDY+P Sbjct 1397 QAAFARFLPAWQHVAGADRERGLRGVDGVLQVIEQLAGAPVPASAWETLVLPARVRDYTP 1456 Query 1148 AMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRAILASLGT 1207 AMLDEL ++G+V WSGAG+++G+DGW++LH AD +TL EP D + R IL +LGT Sbjct 1457 AMLDELTSTGEVIWSGAGTLAGADGWVSLHLADQVALTLPEPDAHDTDELQREILTTLGT 1516 Query 1208 GGAYFFRQLTHDGLTEAELKA---ALWELIWAGRVTGDTFAPVRAVLGGAGTRKRAAPAH 1264 GG YFFRQL+ D + + KA ALW+L+WAG VT DT +P+RA+L G T + Sbjct 1517 GGGYFFRQLS-DAVGSTDDKALVTALWDLVWAGLVTNDTLSPLRALLAGGSTAHKTP--- 1572 Query 1265 GGHRPPRLSRYR-----LTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHG 1319 R PR YR R PT AGRWS +PL E D+T+RA AELLL R+G Sbjct 1573 --QRAPRGRMYRGGRMPRPDMPTRTGPPTAAGRWSIVPLAETDATVRAAGTAELLLERYG 1630 Query 1320 VLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLD 1379 V+T+ +V E V GGFA YKVL+ FED GR +RGYFIE+LG AQF+ TVDRLR + Sbjct 1631 VVTRGSVMTERVPGGFALTYKVLAGFEDTGRARRGYFIETLGAAQFSTGGTVDRLRGFTR 1690 Query 1380 GVDPEQPDYHAVVLAAADPANPYGAALPWPA----------------------------S 1411 D +A+ LAA DPAN YGAALPWP + Sbjct 1691 DPDAGGRPLNALTLAATDPANAYGAALPWPRLDGSSPDADGGTGAGVGMEATDTEATGDT 1750 Query 1412 SADGTA-------------------RPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDP 1452 ADG + R GRKAGALVVLVDG L ++ERG +++L F DD Sbjct 1751 GADGASTAIAESGSVDARGERPTGHRAGRKAGALVVLVDGALVLYVERGSKTVLRFDDDE 1810 Query 1453 EANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRR 1512 AAA L +V G VA + +E+ +G +L + TAL GF TPRGLR Sbjct 1811 AVIRAAAESLGQIVRRGGVAKLAIEKVNGAFIL-----GTPLGTALQEHGFSATPRGLRM 1865 Query 1513 R 1513 R Sbjct 1866 R 1866 >gi|119963676|ref|YP_946581.1| ATP dependent DNA helicase [Arthrobacter aurescens TC1] gi|119950535|gb|ABM09446.1| putative ATP dependent DNA helicase [Arthrobacter aurescens TC1] Length=1648 Score = 1673 bits (4333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 943/1652 (58%), Positives = 1143/1652 (70%), Gaps = 152/1652 (9%) Query 4 AQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWAL 63 A A+SRFS TR+WF F+ PT AQ AW AI+ G + LV+APTGSGKTLAAFLWAL Sbjct 6 ASDGAISRFSQATREWFLGAFSEPTPAQDGAWNAISSGSHALVVAPTGSGKTLAAFLWAL 65 Query 64 DSL---------------AGSEPMSERPAA-TRVLYVSPLKALAVDVERNLRTPLAGLTR 107 D L A + ++RP TRVLY+SPLKAL VDVERNLR PL G+T+ Sbjct 66 DRLHSKPTDTLPGLETVPANGKGRAKRPKTKTRVLYISPLKALGVDVERNLRAPLIGITQ 125 Query 108 LAERQGLPAPQIRVGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQ 167 A+R GLPAP + VGVRSGDT A RR L++ PPD+LITTPESLFLMLTS AR+TL+ V Sbjct 126 TAKRLGLPAPLVTVGVRSGDTTAADRRTLLTNPPDILITTPESLFLMLTSRARETLSEVD 185 Query 168 TVIIDEIHAIAATKRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPT 227 T+IIDE+HA+A TKRGAHLA+SLERLD L + AQRIGLSATV+P E +A+FL+GQ+P Sbjct 186 TIIIDEVHAVAGTKRGAHLAVSLERLDALLPKP-AQRIGLSATVQPRELVAQFLAGQAPV 244 Query 228 TIVAPPAAKTVELSVQVPVPDMANLT----------------DNTIWPDVEARLVDLIES 271 IVAPP+ K L+V VPV DM++L +IWP VE ++VDL+ S Sbjct 245 EIVAPPSKKNWNLTVTVPVEDMSDLQGAAGAFDSGPASGLQPQASIWPHVEEQIVDLVLS 304 Query 272 HNSTIVFANSRRLAERLTARLNEIHAARCGIEL----------APDTNQQV--AGGAPAH 319 STIVFANSRRLAERLTARLNEI+A R + + AP +N + + PAH Sbjct 305 KQSTIVFANSRRLAERLTARLNEIYAERQLMAVGGSEWAAPGAAPQSNPGIPASTATPAH 364 Query 320 IMG-SGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLELGIDMGAVDL 378 +M +G + GA PVLARAHHGS+SK+QRA++E+DLK G+L+ VVATSSLELGIDMGAVDL Sbjct 365 MMAQAGSSTGADPVLARAHHGSVSKDQRAMIEDDLKSGRLRCVVATSSLELGIDMGAVDL 424 Query 379 VIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRMLAGEIETMRV 438 V+QV++PPSVASGLQR+GRAGHQVGEIS GVLFPKHR DLL +V+V+RML+G+IE + + Sbjct 425 VVQVESPPSVASGLQRVGRAGHQVGEISEGVLFPKHRADLLHTSVTVERMLSGQIERLSI 484 Query 439 PANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDLLSGKYPSTEF 498 PANPLDILAQ TVAA AL +D + WF TVRR+APFA+LPRS FEATLDLL+G+YPS EF Sbjct 485 PANPLDILAQQTVAATALGSIDVEDWFSTVRRSAPFASLPRSAFEATLDLLAGRYPSDEF 544 Query 499 AELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYL----------------- 541 AELRPR+++DR GT+ RPGAQRLAVTSGG IPDRGLF VY+ Sbjct 545 AELRPRIIWDRHAGTIEGRPGAQRLAVTSGGTIPDRGLFGVYIIGTEVEGSASPANADGS 604 Query 542 -------ATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPAR 594 A + RVGELDEEMVYESR GDV +LGATSW+I +ITHDRVLV PA GQP + Sbjct 605 EPTASARAAKGGRRVGELDEEMVYESRVGDVFALGATSWKIEDITHDRVLVSPAFGQPGK 664 Query 595 LPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRT 654 LPFW+GD GRP +LG ALGA EL+A D RC G D +A NL + L +Q+ Sbjct 665 LPFWKGDSLGRPVDLGRALGAFIRELSAADEAPAMERCQASGLDAFAASNLIQYLREQKE 724 Query 655 ATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTAS 714 AT +VP+D TL+VERF DELGDWRV+LHSP+G+ VH P ALAVG+RL+ RYG+D A+ Sbjct 725 ATEIVPSDRTLVVERFHDELGDWRVVLHSPFGMPVHAPWALAVGQRLQQRYGLDGSAMAA 784 Query 715 DNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLL 774 D+GIV+R+P ED PPGAELF+FD +E++ IVT EV GSALFASRFRE AARALLL Sbjct 785 DDGIVLRVPMM----EDEPPGAELFLFDPEELEQIVTAEVGGSALFASRFRECAARALLL 840 Query 775 PRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQ 834 PR++P +R PLWQQRQR+A+LL+VARKYP FPIVLETVRECLQDVYD+P L ++ A + + Sbjct 841 PRQNPAKRQPLWQQRQRSAQLLDVARKYPSFPIVLETVRECLQDVYDLPALKDIAASVER 900 Query 835 RRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVEL 894 R +R+ E T +PSPFA SLLFGYV F+YEGD+PLAERRAAALALD TLL ELLGRVEL Sbjct 901 RELRIVETTTQQPSPFAKSLLFGYVAQFLYEGDSPLAERRAAALALDSTLLNELLGRVEL 960 Query 895 RELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAAR----------- 943 RELLD VI +T +LQ LA DR R EGVADLLRLLGPL+ +E+A R Sbjct 961 RELLDAAVIDSTELELQRLAPDRRVRGMEGVADLLRLLGPLSVEEVAQRLQGVEQAEVEG 1020 Query 944 --------AGAPEVS-----GWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAV 990 A AP S L L+ A RAL V+ G + AVED RLRD +G + Sbjct 1021 ADHFDEAPAAAPHGSVVDAGSHLAALQKANRALKVTIGGVERFAAVEDAARLRDAIGVPL 1080 Query 991 PVGLPASFTEAVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLV 1050 P+G+P +F E V DPLG+L+ RYARTH PFT A AAAR GLG+ V L RLA DGR+V Sbjct 1081 PMGVPLAFIEPVHDPLGDLVSRYARTHGPFTAAEAAARLGLGVAVVNTALKRLAGDGRVV 1140 Query 1051 RGEFVAAAKGSAGGE---------------QWCDAEVLRILRRRSLAALRAQAEPVSTAA 1095 GEF A E +WCDAEVLR LRRRSLAALRA+ EPV TAA Sbjct 1141 EGEFRPHAVAEQPAEAPDAELMTIDAPPSSEWCDAEVLRKLRRRSLAALRAEVEPVDTAA 1200 Query 1096 YGRFLPAWQHVSA-GNS------GIDGLAAVIDQLAGVRIPASAIEPLVLAPRIRDYSPA 1148 YGRFLPAWQ+V+A G S G+DG+ +DQL+GV IPASA EPLVLA R+ DY PA Sbjct 1201 YGRFLPAWQNVTAPGKSRSQALRGLDGIITAVDQLSGVPIPASAWEPLVLASRVADYKPA 1260 Query 1149 MLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRAILASLGTG 1208 MLDEL+A+G++ WSGAGS+ G+DGWI+LH ADSA +TL E + DA + +L G Sbjct 1261 MLDELMAAGELLWSGAGSLPGNDGWISLHVADSAELTLNPDPEFEPGDAQQRLLEHFSAG 1320 Query 1209 GAYFFRQLTHDG------LTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRAAP 1262 G YFFRQLT L++ + +ALW+L+WAGRVTGDTFAPVRA++ G T R Sbjct 1321 GGYFFRQLTDVAGGMDAVLSDDAVVSALWDLVWAGRVTGDTFAPVRAMIAGGKTAHRQVA 1380 Query 1263 AHGGHRPPRLSRYRLTHAQA-------------------RNADPTVAGRWSALPLPEPDS 1303 R PR+SR +H A P+ GRWSALP PE D Sbjct 1381 KAPRARAPRMSRLGRSHGTGLLGSPGLTGGRYGSVSGGIAPAPPSAVGRWSALPAPELDP 1440 Query 1304 TLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGA 1363 T+ A AELLL+R+GV+T+ +V AE + GGF +YKVL+ E+AGRC+RGYFIE LG A Sbjct 1441 TIHARGTAELLLDRYGVVTRGSVMAENIIGGFGLMYKVLARLEEAGRCRRGYFIEHLGAA 1500 Query 1364 QFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTA--RPGR 1421 QFAV +TVDRLRS+ + + + A+ LAA DPANPYGAALPWPA S D + RPGR Sbjct 1501 QFAVPATVDRLRSFTEDARISKAEPAALALAATDPANPYGAALPWPALSVDAGSGHRPGR 1560 Query 1422 KAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADG 1481 KAGALVV+VDG L ++ERGG++LLTF+ D AA L D+V G V + +E+ +G Sbjct 1561 KAGALVVMVDGALVLYVERGGKTLLTFSQDDAVLTVAAQALVDVVRRGAVDKLFMEKVNG 1620 Query 1482 MPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 +L + AL AAG TP+GLR R Sbjct 1621 HDLLD-----TPIAVALAAAGAYSTPKGLRIR 1647 >gi|343926676|ref|ZP_08766174.1| putative ATP-dependent helicase [Gordonia alkanivorans NBRC 16433] gi|343763428|dbj|GAA13100.1| putative ATP-dependent helicase [Gordonia alkanivorans NBRC 16433] Length=1544 Score = 1673 bits (4332), Expect = 0.0, Method: Compositional matrix adjust. Identities = 921/1553 (60%), Positives = 1119/1553 (73%), Gaps = 60/1553 (3%) Query 5 QPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALD 64 +PS L RF+A TR WFT F PTAAQ AW +IADG NTLVIAPTGSGKTLAAFLWALD Sbjct 3 RPSVLDRFTAPTRRWFTGAFTKPTAAQKGAWTSIADGANTLVIAPTGSGKTLAAFLWALD 62 Query 65 SLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVR 124 LA + RP T+V+Y+SPLKALAVDVERNLR PL G+TR A+ LP P I VGVR Sbjct 63 RLAADA-ATRRPG-TKVVYISPLKALAVDVERNLRAPLTGITRAAQELDLPEPNITVGVR 120 Query 125 SGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGA 184 SGDT A RR LV PPD+LITTPESL+LMLTSAAR++LT V+ +I+DE+HA+AATKRG Sbjct 121 SGDTSAADRRALVKTPPDILITTPESLYLMLTSAARESLTNVEAIIVDEVHAVAATKRGT 180 Query 185 HLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQV 244 HLAL+LERLD+L + AQRIGLSATVRPPE +A +LSG +P +V P A KT +L V V Sbjct 181 HLALTLERLDELLEKP-AQRIGLSATVRPPEVVAGYLSGSAPCQVVKPKADKTFDLRVDV 239 Query 245 PVPDMANL--------------------TDNTIWPDVEARLVDLIESHNSTIVFANSRRL 284 PV DMAN+ T ++WP VEA +VD IE++ +TIVFANSRRL Sbjct 240 PVEDMANIPPAPGPDGADPAELDDAFSPTAGSLWPYVEASIVDQIEANRATIVFANSRRL 299 Query 285 AERLTARLNEIHAARCGIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKE 344 AE+LTARLNEIHA R G+ P N VAGGAPA +MGSG + GA VLARAHHGS+SKE Sbjct 300 AEKLTARLNEIHAERQGVTPEPTANPTVAGGAPAFVMGSGASSGAEAVLARAHHGSVSKE 359 Query 345 QRAVVEEDLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGE 404 QRA +E+DLK G+L VVATSSLELGIDMGAVDLVIQV+APPSVASGLQRIGRAGHQVGE Sbjct 360 QRAQIEDDLKAGRLSCVVATSSLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGE 419 Query 405 ISRGVLFPKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAW 464 IS+G+L+PKHRTDLL C V+V RML G IE ++VP NPLDILAQ T+AAAA++ L+ D W Sbjct 420 ISQGILYPKHRTDLLHCTVTVGRMLDGAIEEIKVPQNPLDILAQQTIAAAAVDDLEVDHW 479 Query 465 FDTVRRAAPFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLA 524 ++ VRRAAP+ L R +F+ATLDL++G++PS EFAELRPR+ +DRD G +T R GAQRLA Sbjct 480 YEVVRRAAPYRDLGRGVFDATLDLIAGRFPSDEFAELRPRVNWDRDAGVITGRRGAQRLA 539 Query 525 VTSGGAIPDRGLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVL 584 VTSGG+IPDRGLF V++ E+ +RVGELDEEMVYESR GDV +LGATSWRI +ITHDRVL Sbjct 540 VTSGGSIPDRGLFGVFMVGEKSTRVGELDEEMVYESRVGDVFALGATSWRIEDITHDRVL 599 Query 585 VIPAPGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDN 644 V PA GQP RLPFW GD GRPAELGAA+GA TG +A D LG + A N Sbjct 600 VSPAFGQPGRLPFWIGDAIGRPAELGAAIGAFTGAIA--DPGKLDAHAERLGLTENARTN 657 Query 645 LWRLLDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDR 704 L L+ +QR AT +PTD TL+VERFRDELGDWRVILHSPYGLRVH P A A+ +RL Sbjct 658 LATLIAEQREATGHLPTDRTLVVERFRDELGDWRVILHSPYGLRVHAPWASAISQRLLAT 717 Query 705 YGIDEKPTASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRF 764 GI+ TASD+GI++RLPDT +D+PPGA++F+ D DE++ +VT +A S++FASRF Sbjct 718 LGIEGATTASDDGIILRLPDT----DDAPPGADVFLLDPDEVEQLVTDGLADSSMFASRF 773 Query 765 RESAARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPI 824 RE AARALLLPRR PGRR+PLWQQRQR+A+LL VA K+PDFPIVLE VRECLQDVYD+P Sbjct 774 RECAARALLLPRRDPGRRAPLWQQRQRSAQLLSVASKFPDFPIVLEAVRECLQDVYDLPA 833 Query 825 LVELMARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTL 884 L++L+ RI RR+RV E ET PSPFAASLLFGYVGAFMY D PLAERRAAAL+LD +L Sbjct 834 LLDLLGRIRSRRIRVVETETPSPSPFAASLLFGYVGAFMYADDAPLAERRAAALSLDTSL 893 Query 885 LAELLGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARA 944 LA+LLGRV+LRELLDP VIA +LQ L+ DR ARDAE V DLLR LGPLT +E+ R Sbjct 894 LAQLLGRVDLRELLDPGVIAEVIARLQRLSPDRQARDAEDVVDLLRWLGPLTTEEVEPRY 953 Query 945 -GAPEVSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVA 1003 G V+ L L + + + V+ R+ W +++D RLRD +G P+G+PA++ E V Sbjct 954 RGEAAVAEVLAELHRSGQIISVNHNRRALWASIDDTARLRDALGVPAPMGIPAAYLEPVP 1013 Query 1004 DPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAA------ 1057 DP+G+L+GRYARTH PFT AAA G+ V D L RLA++ R+V G+F+ Sbjct 1014 DPVGDLIGRYARTHGPFTVTDAAASLGIATAVVRDTLARLAAERRVVEGDFLPETGTADP 1073 Query 1058 AKGSAGGEQWCDAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGN--SGIDG 1115 A+G+A QWC +VL +RR SLAA RA+ PV T RFL WQH S G SG+DG Sbjct 1074 AQGAAPTTQWCHTDVLGQIRRGSLAASRAEVAPVGTEVLTRFLVEWQHGSPGTQLSGVDG 1133 Query 1116 LAAVIDQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIA 1175 LA VIDQLAG +PASA E L+L R+ DY+P+MLDELL+SG+V WSG G I +DGW+A Sbjct 1134 LATVIDQLAGYPLPASAWESLILPARVSDYAPSMLDELLSSGEVVWSGHGRIGNADGWVA 1193 Query 1176 LHPADSAPMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQLTHD---GLTE--AELKAAL 1230 LHPAD A +++E ID T H AI +L GGA F Q+ D G T A++++AL Sbjct 1194 LHPADVAAFSISEADTIDTTALHDAITTALHPGGALRFPQIAADISTGTTTPAADIESAL 1253 Query 1231 WELIWAGRVTGDTFAPVRAVLGG--AGTRKRAAPAHGGH-RPPRL------SRYRLTHAQ 1281 W+L+WAG+V+ DTFAPVRA+L + T R+APAH R PRL +RY HA Sbjct 1254 WDLVWAGQVSNDTFAPVRALLHPRRSPTTPRSAPAHRARGRAPRLRAGRLSARYLTEHAS 1313 Query 1282 ARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKV 1341 PT +GRW AL PE D T+ + LL R+GV+T+ +V AE V GGFA +YK Sbjct 1314 GPPVSPTASGRWFALDRPEIDPTIATQALCDQLLTRYGVITRGSVTAEEVTGGFARVYKA 1373 Query 1342 LSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANP 1401 L+ FED G+ +RGY+++ LGGAQFA +TVD LR + + +P A +LAA DP NP Sbjct 1374 LTIFEDNGQVRRGYYVDGLGGAQFASPATVDELRRH--ALPDRKPPREATILAATDPGNP 1431 Query 1402 YGAALPWPAS-SADGTARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAI 1460 YGAAL WP S AD RPGRK GALVVLVDGEL F+ERGG++LLTFTD A +AA Sbjct 1432 YGAALEWPRSRDADAGHRPGRKPGALVVLVDGELVCFVERGGKTLLTFTDSIPALESAAG 1491 Query 1461 GLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 L LV AGR++ + ++ D PV R + L+ AGF TPRG+R R Sbjct 1492 ALVALVRAGRISRLTIDAIDSEPV-----RGTDFGKVLVEAGFSTTPRGIRLR 1539 >gi|88854732|ref|ZP_01129398.1| Lhr-like helicase [marine actinobacterium PHSC20C1] gi|88815893|gb|EAR25749.1| Lhr-like helicase [marine actinobacterium PHSC20C1] Length=1574 Score = 1666 bits (4314), Expect = 0.0, Method: Compositional matrix adjust. Identities = 929/1595 (59%), Positives = 1116/1595 (70%), Gaps = 116/1595 (7%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 L +FS TR+WF F A T AQ AW AI+ G + LV+APTGSGKTLAAFLWA+D LA Sbjct 5 LGKFSPATREWFEGAFDAATPAQLGAWEAISTGSHALVVAPTGSGKTLAAFLWAIDQLA- 63 Query 69 SEPMSERPAA-TRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGD 127 S PM E P TRVLY+SPLKAL VDVERNLR PL G+T+ A R GL P I VGVRSGD Sbjct 64 SRPMPENPKQRTRVLYISPLKALGVDVERNLRAPLVGVTQTARRLGLGEPNITVGVRSGD 123 Query 128 TPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLA 187 T RR L PPD+LITTPESL+LMLTSAAR+TL G+ TVIIDE+HA+AATKRGAHLA Sbjct 124 TTAQDRRLLARLPPDILITTPESLYLMLTSAARETLKGIDTVIIDEVHAVAATKRGAHLA 183 Query 188 LSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVP 247 LSLERLD L ++ QRIGLSATVRP EE+ARFL G++P TIV PP+AKT ELSV VPVP Sbjct 184 LSLERLDALLAKP-VQRIGLSATVRPIEEVARFLGGRAPVTIVHPPSAKTFELSVIVPVP 242 Query 248 DMA-----------------------NLTDNTIWPDVEARLVDLIESHNSTIVFANSRRL 284 DM + ++WP VE R+VD I H STIVFANSRRL Sbjct 243 DMTIPGTVASARNKAAGGSGRDDEATPESTGSLWPHVEERIVDAILDHRSTIVFANSRRL 302 Query 285 AERLTARLNEIHAARCGIELAPDTNQQVAGGA----------------------PAHIMG 322 AERLTARLNEI+ R + + D + A PA +M Sbjct 303 AERLTARLNEIYDERMN-DGSIDGDAGDAASVLAQSQASADAAAYAAPQQPWKPPAQMMA 361 Query 323 SG-QTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLELGIDMGAVDLVIQ 381 G T GA P+LARAHHGS+SK+QRA++E+DLK G L+ VVATSSLELGIDMGAVDLVIQ Sbjct 362 QGGSTMGAAPLLARAHHGSVSKDQRAIIEDDLKTGVLRCVVATSSLELGIDMGAVDLVIQ 421 Query 382 VQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRMLAGEIETMRVPAN 441 V++PPSVASGLQRIGRAGHQVGEIS+G+LFPKHRTDL+ +V+V+RM +G+IE + VP N Sbjct 422 VESPPSVASGLQRIGRAGHQVGEISKGLLFPKHRTDLIHTSVAVERMRSGQIEALAVPTN 481 Query 442 PLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDLLSGKYPSTEFAEL 501 PLD+LAQ TVAA AL+ +D + WFDTVRR+APF+TLPRS F+ATLDLLSG YPS EF+EL Sbjct 482 PLDVLAQQTVAAVALDEIDIEDWFDTVRRSAPFSTLPRSAFDATLDLLSGLYPSDEFSEL 541 Query 502 RPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYL----ATERPSRVGELDEEMV 557 RPR+V+DR GTL RPGAQRLAVTSGG IPDRGLF V++ A RVGELDEEMV Sbjct 542 RPRVVWDRVAGTLAGRPGAQRLAVTSGGTIPDRGLFGVFMIGGEAGAPGRRVGELDEEMV 601 Query 558 YESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDAGRPAELGAALGALT 617 YESR GD+ +LG TSWRI +ITHD+VLV PA GQP R+PFW+GD GRPAELG A+GA T Sbjct 602 YESRVGDIFALGTTSWRIEDITHDQVLVSPAFGQPGRVPFWKGDGLGRPAELGEAIGAFT 661 Query 618 GELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDSTLLVERFRDELGDW 677 E+A R +G D++A NL L+ +Q+ +T VP+D+TL+VERFRDELGDW Sbjct 662 KEIATASADDARARAESIGLDEHAVTNLIALVTEQKASTGHVPSDTTLVVERFRDELGDW 721 Query 678 RVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPDTVSAGEDSPPGAE 737 RV+LHSPYG+ VH P ALA+ R+R++ G+D A D+GIVVR+PDT +A PPGA+ Sbjct 722 RVVLHSPYGMPVHAPWALAITARIREQLGVDGAAMAGDDGIVVRIPDTDAA----PPGAD 777 Query 738 LFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSPLWQQRQRAARLLE 797 LFVFDADE++ IVT EV GSALFA+RFRE AARALLLPRR PG+RSPLWQQRQRA++LL+ Sbjct 778 LFVFDADELEQIVTEEVGGSALFAARFRECAARALLLPRRDPGKRSPLWQQRQRASQLLD 837 Query 798 VARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEAETAKPSPFAASLLFG 857 VARKYP FPIVLETVRE LQDVYD+P L L RIA R +RV E ET PSPFA SLLFG Sbjct 838 VARKYPSFPIVLETVREVLQDVYDLPALTALTKRIASRSIRVMETETEVPSPFARSLLFG 897 Query 858 YVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDVIAATSRQLQHLAADR 917 Y+ AF+YEGD+PLAERRAAAL+LD LLAELLGR ELRELLDPDVIA T +LQ L +R Sbjct 898 YMAAFVYEGDSPLAERRAAALSLDPALLAELLGRAELRELLDPDVIAQTENELQRLTPER 957 Query 918 VARDAEGVADLLRLLGPLTEDEIAARA---GAPEVSGWLDGLRAAKRALVVSFAGRSWWV 974 ARDAEG+ DLLR+LGP T EI R+ GA + L GL A R L V+ AG W Sbjct 958 HARDAEGLVDLLRVLGPQTVAEIEVRSLVTGAALATD-LAGLAKANRVLEVTIAGERRWA 1016 Query 975 AVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAAAAARFGLGLR 1034 +ED RLRD +G +P+G+PA+F E V DP+G+L+ RYARTH PFT A AAARFGLG Sbjct 1017 VIEDSARLRDALGVPLPIGVPAAFIEPVDDPVGDLVSRYARTHGPFTLADAAARFGLGTA 1076 Query 1035 VTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRSLAALRAQAEPVSTA 1094 V D L RLA+D R+V GEF A G+ +WC +VLR LR RSLAALR + EPVS A Sbjct 1077 VVQDTLRRLAADRRVVDGEFRPGATGT----EWCSVDVLRRLRSRSLAALRQEVEPVSPA 1132 Query 1095 AYGRFLPAWQHVS-AGNS--GIDGLAAVIDQLAGVRIPASAIEPLVLAPRIRDYSPAMLD 1151 GRFLPAWQHVS AG+S GIDGLA VIDQLAG PASA E +L+ RIRDYSPA LD Sbjct 1133 TLGRFLPAWQHVSAAGDSLRGIDGLAQVIDQLAGYSAPASAWENFILSARIRDYSPARLD 1192 Query 1152 ELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRAILASLGTGGAY 1211 EL SG+V W+G G+++GSDGWI+LHPA +A +TL EP ++ ++IL +L GGA+ Sbjct 1193 ELTTSGEVVWAGQGALAGSDGWISLHPAATAALTLPEPDRDGLSELQQSILDALAGGGAF 1252 Query 1212 FFRQLTHD-GLTEAE-LKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRAAPAHGGHRP 1269 FFRQL++ G T+ + L LW+L+W +T D+FAP+RA LGG RA Sbjct 1253 FFRQLSNQIGSTDDKALLKELWDLVWRSLITNDSFAPLRAHLGGTVRATRAPRPAR---- 1308 Query 1270 PRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAE 1329 + A+ P+ +GRW+ L E ++T+RA AEL+L RH V+T+ AV +E Sbjct 1309 -ARAYRGRVSTVAQAGPPSASGRWALLETAEGETTVRAKSTAELMLERHAVVTRGAVVSE 1367 Query 1330 GVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDGVDPE-QPDY 1388 G+ GGFA Y+VLS FE+ GR +RGYFIE LG AQFA +TVDRLR + DP+ P+ Sbjct 1368 GIRGGFALTYRVLSGFEETGRARRGYFIEGLGAAQFATGATVDRLRGFTR--DPDAAPEL 1425 Query 1389 HAVVLAAADPANPYGAALPWP--------ASSADGTA---------------------RP 1419 A+ LAA DPANPYGAAL WP + + DGT RP Sbjct 1426 RAITLAATDPANPYGAALAWPGLGGEDAGSDAGDGTESDAATATASSAKPAAYSPKKHRP 1485 Query 1420 GRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERA 1479 GRKAGA+VVLVDG L+ +LERGG+SLL F +P AA L + G + + +E+ Sbjct 1486 GRKAGAIVVLVDGHLSLYLERGGKSLLAFDLEPAVVDAATRSLTSTLR-GTLPKLRIEKV 1544 Query 1480 DG-MPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 +G V P G+ AL+ AGFV TP+GLR R Sbjct 1545 NGEFAVGTPVGK------ALVEAGFVATPQGLRLR 1573 >gi|333921178|ref|YP_004494759.1| putative ATP-dependent helicase [Amycolicicoccus subflavus DQS3-9A1] gi|333483399|gb|AEF41959.1| Putative ATP-dependent helicase [Amycolicicoccus subflavus DQS3-9A1] Length=1517 Score = 1665 bits (4312), Expect = 0.0, Method: Compositional matrix adjust. Identities = 898/1545 (59%), Positives = 1088/1545 (71%), Gaps = 68/1545 (4%) Query 7 SALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSL 66 SAL FS TR+WF +F APT AQ AW I ++LV+APTGSGKTLAAFLWALD + Sbjct 2 SALENFSPATREWFRGSFGAPTPAQEQAWDEIRQCSHSLVVAPTGSGKTLAAFLWALDRI 61 Query 67 AGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSG 126 +E TR++Y+SPLKALAVDVERNLR+PL G+ A +GL P + VGVR+G Sbjct 62 T-----TEEDRGTRIVYLSPLKALAVDVERNLRSPLTGIANTARVKGLTPPSVTVGVRTG 116 Query 127 DTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHL 186 DTP A R+ ++ PPD+LITTPESLFLMLTSAAR+TL GV+TVI+DEIH+IA +KRGAHL Sbjct 117 DTPNAQRQAMLRNPPDILITTPESLFLMLTSAARETLAGVETVIVDEIHSIADSKRGAHL 176 Query 187 ALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPV 246 ALSLERLD L + AQRIGLSATVRP EE+ARFL+G P +IVAPP K +L V VPV Sbjct 177 ALSLERLDALLEKP-AQRIGLSATVRPREEVARFLAGARPVSIVAPPTEKLFDLRVSVPV 235 Query 247 PDMAN--------------LTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARL 292 DMAN L+ N++WP VE +L DLI H S+IVFANSRRLAERLTARL Sbjct 236 EDMANVPAAPGGTDSDAKNLSANSLWPHVEEQLADLILDHRSSIVFANSRRLAERLTARL 295 Query 293 NEIHAARCGIELAPDTNQQVAGGAPAHIMGSGQTF-GAPPVLARAHHGSISKEQRAVVEE 351 NEI++ R G EL T PA +M G + +P VLARAHHGS+SKEQRA++E+ Sbjct 296 NEIYSERQGTELPSQTR------PPAEVMAQGGSVRESPAVLARAHHGSVSKEQRALIED 349 Query 352 DLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLF 411 DLK G+L+ VVATSSLELGIDMGAVDLVIQV++PPSVASGLQR+GRAGHQVGEISRG+LF Sbjct 350 DLKTGRLRCVVATSSLELGIDMGAVDLVIQVESPPSVASGLQRVGRAGHQVGEISRGILF 409 Query 412 PKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRA 471 PKHR DLL CAV+V+RM G IE +RVPANPLD+LAQ TVAA ALEPLD + WF TVRR Sbjct 410 PKHRADLLHCAVTVERMREGAIEAIRVPANPLDVLAQQTVAACALEPLDVEQWFQTVRRT 469 Query 472 APFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAI 531 +++LPRS F+ATLDLL+GKYPS +FAELRPR+++DRD G +T RPGAQRLAVTSGG I Sbjct 470 GSYSSLPRSAFDATLDLLAGKYPSDQFAELRPRIIWDRDHGVVTGRPGAQRLAVTSGGTI 529 Query 532 PDRGLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQ 591 PDRG++ V++ E+ +RVGELDEEMVYESR GDV +LGATSWRI +ITHDRVLV PAPGQ Sbjct 530 PDRGMYPVFMVGEKNTRVGELDEEMVYESRVGDVFALGATSWRIEDITHDRVLVTPAPGQ 589 Query 592 PARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDD 651 RLPFW GD GRP+ELGAALGA ++AA D + R + G DD A N + + Sbjct 590 FGRLPFWIGDSLGRPSELGAALGAFIRDIAADDESVH-ERLSESGLDDNAVTNTLSFIRE 648 Query 652 QRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKP 711 QR AT+VVP+D+TLLVERFRDELGDWR+ILHSPYGL VH P ALAV R+R+RY +D Sbjct 649 QRDATSVVPSDTTLLVERFRDELGDWRIILHSPYGLPVHAPWALAVNARIRERYALDGAA 708 Query 712 TASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARA 771 +D+ ++VRLPDT E PPGA+LF F DEID IVT E+ SALFA+RFRE AARA Sbjct 709 VTTDDAVIVRLPDT----EGEPPGADLFAFSPDEIDAIVTAEIGSSALFAARFRECAARA 764 Query 772 LLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMAR 831 LLLPRR PG+RSPLW QRQR+A+LLEVAR YP FPIVLE VRECLQDVYDVP L +L+ + Sbjct 765 LLLPRRDPGKRSPLWMQRQRSAQLLEVARSYPTFPIVLEAVRECLQDVYDVPGLAKLLTQ 824 Query 832 IAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGR 891 + +R++R+ E ET PSPFA S LFGY GAF+YEGD+PLAER+AAAL+LD TLLAELLGR Sbjct 825 VERRQIRIVETETNTPSPFAVSALFGYTGAFIYEGDSPLAERKAAALSLDTTLLAELLGR 884 Query 892 VELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSG 951 +E+R+LLD DVI LQ L R A AE ++D+LR +GPLT EI R + +G Sbjct 885 LEMRDLLDGDVITDYEGYLQWLT--RKADSAEKLSDMLRTIGPLTTSEIVERC-TDDPAG 941 Query 952 WLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLG 1011 WL GL ++RA+ V+FAGR+WWV ED GR+RD GA +P+G+P +F E D + EL+ Sbjct 942 WLRGLEESRRAIEVAFAGRTWWVVAEDAGRMRDAFGAPLPIGIPVAFLEPAPDAVTELIA 1001 Query 1012 RYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAE 1071 RYAR+H PFT+AA ARFGL + VL LA+D R+ GEF G+ G +WCD Sbjct 1002 RYARSHGPFTSAAIMARFGLPYGLVVSVLRSLATDRRVAEGEF---RPGNDGVPEWCDIG 1058 Query 1072 VLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNS-GIDGLAAVIDQLAGVRIPA 1130 VL +LRRRSLA LR EPVST RFLP W V + + G DG+ + IDQLAGV +PA Sbjct 1059 VLAVLRRRSLAKLRDAIEPVSTTTLARFLPGWMGVGSHLARGADGVLSTIDQLAGVPLPA 1118 Query 1131 SAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPA 1190 SAIEPL+L R+ DYSPA LDEL +SG+V W+GAG++S DGWI+LH AD+AP+TL + Sbjct 1119 SAIEPLILGTRVADYSPAFLDELTSSGEVLWAGAGALSTRDGWISLHLADTAPVTLPQIP 1178 Query 1191 EIDFTDAHRAILASLGTGGAYFFRQLT----HDGLTEAE-------LKAALWELIWAGRV 1239 D + I A L GG YFFR+L D L + E L LWEL+WAGRV Sbjct 1179 PSDLSAVALRIEAVLVRGGGYFFRELADSVGRDLLADGEEPPSDSALVDGLWELVWAGRV 1238 Query 1240 TGDTFAPVRAVL-----GGAGTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWS 1294 T DTF+PVRA + G AGT R R R +R T R+ PTVAGRWS Sbjct 1239 TNDTFSPVRARMSSGRRGTAGTTHRTRQVPSRTRTFRAARLPRTALPTRSGPPTVAGRWS 1298 Query 1295 ALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAG-GFATLYKVLSAFEDAGRCQR 1353 LP+ EPD T+RAH E LL R+G++TK+ + AE GF LYKV E+ G C+R Sbjct 1299 LLPMSEPDVTVRAHGMCEQLLARYGIVTKNVLTAERSPDLGFTVLYKVFRELEERGLCRR 1358 Query 1354 GYFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSA 1413 GYF+E+LG AQFA ++ VD+LRS D + A+ LAA DPANPYGAALPWP Sbjct 1359 GYFVETLGAAQFATSAVVDQLRSIGD----QDSAGTALALAAVDPANPYGAALPWP-DPP 1413 Query 1414 DGTARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVAS 1473 G R GRKAGALVV+VDG L +LERGG++ L + DDP AA L + +G + Sbjct 1414 TGGHRAGRKAGALVVMVDGALQVYLERGGKTALVYGDDPATLDGAARALVGIARSGALDK 1473 Query 1474 ILVERADGMPVLQPGGRASAALTALLA-----AGFVRTPRGLRRR 1513 +L+E +G+P PG + A GF PRG R R Sbjct 1474 LLIETINGVPA--PGAEHADGAVGFFARALSENGFAVVPRGYRYR 1516 >gi|116669189|ref|YP_830122.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp. FB24] gi|116609298|gb|ABK02022.1| ATP dependent helicase, Lhr family [Arthrobacter sp. FB24] Length=1694 Score = 1662 bits (4303), Expect = 0.0, Method: Compositional matrix adjust. Identities = 947/1674 (57%), Positives = 1144/1674 (69%), Gaps = 179/1674 (10%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLAG 68 + RFS TR+WF F+APT AQ AW AI+ G + LV+APTGSGKTLAAFLWALD L Sbjct 30 MDRFSQATREWFLGAFSAPTPAQNGAWNAISSGSHALVVAPTGSGKTLAAFLWALDRLQS 89 Query 69 SEPMSER------PAA-----------TRVLYVSPLKALAVDVERNLRTPLAGLTRLAER 111 S P PAA TRVLY+SPLKAL VDVERNLR PL G+T+ A+R Sbjct 90 SAPAEPEALPGLDPAAKGRKPKTPKRKTRVLYISPLKALGVDVERNLRAPLIGITQTAKR 149 Query 112 QGLPAPQIRVGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVII 171 GLPAP I VGVRSGDT A RR L+S PPD+LITTPESLFLMLTS AR+TL+ V T+I+ Sbjct 150 LGLPAPLITVGVRSGDTTTADRRALLSHPPDILITTPESLFLMLTSKARETLSEVDTIIV 209 Query 172 DEIHAIAATKRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVA 231 DE+HA+A TKRGAHLA+SLERLD L + AQRIGLSATV P E +A+FL+G +P IVA Sbjct 210 DEVHAVAGTKRGAHLAVSLERLDALLPKP-AQRIGLSATVEPRELVAQFLAGSAPVEIVA 268 Query 232 PPAAKTVELSVQVPVPDMANLT----------------DNTIWPDVEARLVDLIESHNST 275 PP+ K +L+V VPV DM++L +IWP VE ++VDL+ ++ ST Sbjct 269 PPSKKNWDLTVSVPVEDMSDLQGAAGAFDSGPASGLQPQASIWPHVEEKIVDLVMANQST 328 Query 276 IVFANSRRLAERLTARLNEIHAAR------CGIEL----APDTNQQ------------VA 313 IVFANSRRLAERLTARLNEI+A R G++ APD + Sbjct 329 IVFANSRRLAERLTARLNEIYAERQLMAASGGLDGSGAGAPDFEPAGAPAGGASAAVPTS 388 Query 314 GGAPAHIMG-SGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLELGID 372 PAH+M +G T GA PVLARAHHGS+SK+QRA++E+DLK G+L+ VVATSSLELGID Sbjct 389 TATPAHMMAQAGSTVGADPVLARAHHGSVSKDQRALIEDDLKSGRLRCVVATSSLELGID 448 Query 373 MGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRMLAGE 432 MGAVDLV+QV++PPSVASGLQR+GRAGHQVGE+S+GVLFPKHR DL+ ++V+RMLAG+ Sbjct 449 MGAVDLVVQVESPPSVASGLQRVGRAGHQVGEVSQGVLFPKHRADLVHTTITVERMLAGK 508 Query 433 IETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDLLSGK 492 IE + VPANPLDILAQ TVAA AL +D + WF TVRR+APFA+LPRS FEATLDLL+G+ Sbjct 509 IERLYVPANPLDILAQQTVAATALGSIDVEEWFSTVRRSAPFASLPRSAFEATLDLLAGR 568 Query 493 YPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYL-ATERPSR--- 548 YPS EFAELRPR+++DR+ GT+ RPGAQRLAVTSGG IPDRGLF VY+ TE Sbjct 569 YPSDEFAELRPRIIWDRNAGTIEGRPGAQRLAVTSGGTIPDRGLFGVYIIGTETEGTGSS 628 Query 549 -------------------------VGELDEEMVYESRPGDVISLGATSWRITEITHDRV 583 VGELDEEMVYESR GDV +LGATSW+I +ITHDRV Sbjct 629 GSPGSASGDGRAASPAAAAAKGGRRVGELDEEMVYESRVGDVFALGATSWKIEDITHDRV 688 Query 584 LVIPAPGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATD 643 LV PA GQP +LPFW+G GRP +LG ALGA EL+A D RC G DD+A + Sbjct 689 LVSPAFGQPGKLPFWKGASLGRPVDLGRALGAFVRELSASDVGPAMERCKASGLDDFAAN 748 Query 644 NLWRLLDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRD 703 NL + L +Q+ AT VVP+D+TL+VERF DELGDWRV+LHSP+G+ VH P ALAVG+RL Sbjct 749 NLIQYLAEQKLATEVVPSDTTLVVERFHDELGDWRVVLHSPFGMPVHAPWALAVGQRLHQ 808 Query 704 RYGIDEKPTASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASR 763 RYG+D A+D+GIV+R+P ED PPGAELF+FD +E++ IVT EV GSALFASR Sbjct 809 RYGMDGSAMAADDGIVLRVPMM----EDEPPGAELFLFDPEELEQIVTAEVGGSALFASR 864 Query 764 FRESAARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVP 823 FRE AARALLLPR+ PG+R PLWQQRQR+A+LL+VARKYP FPIVLETVRECLQDVYD+P Sbjct 865 FRECAARALLLPRQTPGKRQPLWQQRQRSAQLLDVARKYPTFPIVLETVRECLQDVYDLP 924 Query 824 ILVELMARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGT 883 L ++ A I +R +R+ + T +PSPFA SLLFGYV F+YEGD+PLAERRAAALALD T Sbjct 925 ALKDIAASIERRELRILQTTTQQPSPFAKSLLFGYVAQFLYEGDSPLAERRAAALALDST 984 Query 884 LLAELLGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAAR 943 LL ELLGRVELRELLD VI AT R+LQ LA DR R EGVADLLRLLGPLT E+AAR Sbjct 985 LLNELLGRVELRELLDAKVIDATERELQRLAPDRRVRGMEGVADLLRLLGPLTPAEVAAR 1044 Query 944 --AGAPEVSGWLDGLRAA-----------------------KRALVVSFAGRSWWVAVED 978 P V+ G+ A RAL V+ G + AVED Sbjct 1045 LEPAGPPVAEPAPGVEPAPVVEPVGTLVADAAAHLAALQRANRALRVNIGGVERFAAVED 1104 Query 979 MGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTAD 1038 RLRD +G +P+G+P +F E VADPLG+L+ RYARTH PFT A AAAR GLG+ V Sbjct 1105 AARLRDAIGVPLPMGVPLAFIEPVADPLGDLVSRYARTHGPFTAAEAAARLGLGVAVVGT 1164 Query 1039 VLGRLASDGRLVRGEF-------------------------VAAAKGSAGGEQWCDAEVL 1073 L RLA+DGR+V GEF A+ AG +WCDAEVL Sbjct 1165 ALKRLAADGRVVEGEFRPHATPPRQVPETPEPGEEDAPALPSASTITLAGTSEWCDAEVL 1224 Query 1074 RILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSA----GNS---GIDGLAAVIDQLAGV 1126 R LRRRSLAALRA+ EPV +AYGRFLPAWQ+V G S G+DG+ +DQL+GV Sbjct 1225 RKLRRRSLAALRAEVEPVDASAYGRFLPAWQNVRTPGRRGQSALRGLDGIITAVDQLSGV 1284 Query 1127 RIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTL 1186 +PASA EPLVLA R+ DY PAMLDEL+A+G+V WSGAG++ G+DGW++LH ADSA +TL Sbjct 1285 PVPASAWEPLVLASRVSDYQPAMLDELMAAGEVLWSGAGALPGNDGWVSLHLADSAELTL 1344 Query 1187 AEPAEIDFTDAHRAILASL-GTGGAYFFRQLTHDG------LTEAELKAALWELIWAGRV 1239 + DA + +L L GG YFFRQLT L++ ++ +ALW+L WAGR+ Sbjct 1345 NPAPDYQPGDAQQRLLEHLQNNGGGYFFRQLTDIAGGMDSVLSDQDVVSALWDLAWAGRI 1404 Query 1240 TGDTFAPVRAVLGGAGTRKRAAPAHGGHRPPRLSRYRLTHAQ------------------ 1281 TGDTFAPVRA++ G T R R PR+SR H Sbjct 1405 TGDTFAPVRAMIAGGHTAHRQVARAPRARAPRMSRLGRAHGTGLMGSAGLTGGRYGSVTG 1464 Query 1282 ARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKV 1341 A P AGRWSALPLPE D T+ A AELLL+R+GV+T+ +V AE + GGF +YKV Sbjct 1465 AAPTPPLAAGRWSALPLPELDPTIHARATAELLLDRYGVVTRGSVMAENILGGFGLMYKV 1524 Query 1342 LSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANP 1401 L+ E+AGRC+RGYFIE LG AQFAV +TVDRLRSY + +P+ A+ LAA DPANP Sbjct 1525 LARLEEAGRCRRGYFIEHLGAAQFAVPATVDRLRSYSEDSQLAKPEPVALALAATDPANP 1584 Query 1402 YGAALPWPASSADGTA--RPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAA 1459 YGAALPWPA S + + RPGRKAGALVV+VDG LA ++ERGG++LL F +DPE AAA Sbjct 1585 YGAALPWPALSVEAGSGHRPGRKAGALVVMVDGALALYVERGGKTLLAFDEDPEVLAAAA 1644 Query 1460 IGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 L +V G V +++E+ +G +L + A AL AG TP+GLR R Sbjct 1645 AALVGVVKRGAVDKLIMEKVNGHGILD-----TPAAAALTHAGAYSTPKGLRIR 1693 >gi|119716556|ref|YP_923521.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp. JS614] gi|119537217|gb|ABL81834.1| ATP dependent helicase, Lhr family [Nocardioides sp. JS614] Length=1516 Score = 1658 bits (4293), Expect = 0.0, Method: Compositional matrix adjust. Identities = 935/1540 (61%), Positives = 1118/1540 (73%), Gaps = 63/1540 (4%) Query 7 SALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSL 66 SAL RFS TR WF + FA PT AQ AWAAI + LV+APTGSGKTL+AFLW+LD L Sbjct 2 SALERFSEPTRTWFGAAFATPTPAQEGAWAAIGADRHALVVAPTGSGKTLSAFLWSLDRL 61 Query 67 AGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSG 126 + P ++ RVLY+SPLKAL VDVERNLR PL G+ AER G P++RVGVRSG Sbjct 62 MTTPPPEDKRHRCRVLYISPLKALGVDVERNLRAPLTGIRHTAERLGTTVPEVRVGVRSG 121 Query 127 DTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHL 186 DTP A RR+L + PPD+LITTPESLFLMLTS AR++L GV+TVI+DE+HA+A KRGAHL Sbjct 122 DTPAADRRKLTTAPPDILITTPESLFLMLTSQARESLRGVETVIVDEVHAVAGGKRGAHL 181 Query 187 ALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPV 246 A+SLERLD L R AQRIGLSATVRP EE+ARFL G +P IVAPP+ K +L V VPV Sbjct 182 AVSLERLDALLERP-AQRIGLSATVRPLEEVARFLGGTAPVEIVAPPSEKQWDLRVVVPV 240 Query 247 PDM---ANLTDNT--------IWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEI 295 DM A ++T IWP VE R+ DL++ H STIVFANSRRLAERLTARLNEI Sbjct 241 EDMTAPAEYDEDTDDPQRAQSIWPHVEERVADLVQQHRSTIVFANSRRLAERLTARLNEI 300 Query 296 ---HAARCGIELAPDTNQQVAGGAPAHIMG----SGQTFGAP--PVLARAHHGSISKEQR 346 AA G+E A +GG PA IM S + G P V+A+AHHGS+SKEQR Sbjct 301 ATERAADAGLE-ARSARTSTSGGPPAAIMAQSGISTSSTGDPGTTVIAKAHHGSVSKEQR 359 Query 347 AVVEEDLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEIS 406 A++E+DLKRG+L VVATSSLELGIDMGAVDLVIQ+++PPSVAS LQR+GRAGHQVGE+S Sbjct 360 ALIEDDLKRGRLPCVVATSSLELGIDMGAVDLVIQIESPPSVASALQRVGRAGHQVGEVS 419 Query 407 RGVLFPKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFD 466 RGVLFPKHR DL AV+V+RM G IE++RVP NPLD+LAQ VAA AL+ AD F+ Sbjct 420 RGVLFPKHRGDLAQTAVAVERMRTGAIESLRVPTNPLDVLAQQVVAATALDAWPADELFE 479 Query 467 TVRRAAPFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVT 526 VRR+APF LPRS ++ATLDLL+G+YPS EFAELRPR+V+DR TGTLT RPGAQRLAVT Sbjct 480 LVRRSAPFTQLPRSAYDATLDLLAGRYPSDEFAELRPRIVWDRVTGTLTGRPGAQRLAVT 539 Query 527 SGGAIPDRGLFAVYL--ATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVL 584 SGG IPDRGLF V+L T RVGELDEEMVYESR GDV +LGATSWRI +ITHDRVL Sbjct 540 SGGTIPDRGLFGVFLVGGTGPGRRVGELDEEMVYESRVGDVFALGATSWRIEDITHDRVL 599 Query 585 VIPAPGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDN 644 V PAPG P RLPFW+GD GRPAELGAA+GA T ELAAL R R G D+YA N Sbjct 600 VTPAPGVPGRLPFWKGDTLGRPAELGAAIGAFTRELAALPRDRATARAVRDGLDEYAAGN 659 Query 645 LWRLLDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDR 704 L L +Q +T V+P+D TL+VERFRDELGDWR+++HSPYG VH P ALA+ RLR+R Sbjct 660 LLTYLHEQLESTNVLPSDRTLVVERFRDELGDWRLVVHSPYGTPVHAPWALAINARLRER 719 Query 705 YGIDEKPTASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRF 764 YG+D + ASD+GIV+R+PDT E PPG ++ VFD DE++ IVTTEV GSALFASRF Sbjct 720 YGVDGQAVASDDGIVIRIPDT----ESEPPGGDVIVFDPDEVEGIVTTEVGGSALFASRF 775 Query 765 RESAARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPI 824 RE AARALLLPRR PGRRSPLWQQRQR+A LLEVA KYP FPIVLE VRECLQDVYD+P Sbjct 776 RECAARALLLPRRDPGRRSPLWQQRQRSAALLEVAAKYPSFPIVLEAVRECLQDVYDLPS 835 Query 825 LVELMARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTL 884 L+ LM + +R V+V + T +PSPFA SLLFGYV FMYEGD+P+AERRAAALALD L Sbjct 836 LLALMRGVDRREVQVVDVATHQPSPFARSLLFGYVAQFMYEGDSPIAERRAAALALDQGL 895 Query 885 LAELLGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAAR- 943 LAELLGR ELRELLDP+V+A +LQ LA DR ARD EGV DL+RL+GPL DE+AAR Sbjct 896 LAELLGRAELRELLDPEVLAEVEAELQRLAPDRRARDPEGVVDLVRLIGPLGTDEVAARC 955 Query 944 -AGAPEVSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAV 1002 AGA +V WL+ L A+R + V AG W VED+GRLRDG+G VP G P FT+ V Sbjct 956 VAGA-DVGEWLEALGRARRVVQVRMAGAERWAVVEDVGRLRDGLGVPVPPGTPDVFTDPV 1014 Query 1003 ADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSA 1062 DPLG+L+ RYAR+H PFTT AAR GLG V L RLA+ GR++ GEF + S Sbjct 1015 EDPLGDLVSRYARSHGPFTTEQVAARLGLGAAVVRHTLQRLAAQGRVLDGEF----RPSG 1070 Query 1063 GGEQWCDAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNS------GIDGL 1116 G +WCDAEVLR LRRRSLA LR + EPV A GRFL AWQ V+ G++ G+DG+ Sbjct 1071 SGTEWCDAEVLRRLRRRSLARLRQEIEPVEPEALGRFLAAWQRVATGSTSRGARRGVDGV 1130 Query 1117 AAVIDQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIAL 1176 AV+DQLAG +PASA+EPLVLA R+ DY P+ LDEL ASG+V W+G ++ GSDGW++L Sbjct 1131 LAVVDQLAGCALPASALEPLVLAARVSDYEPSYLDELTASGEVLWAGHAALPGSDGWVSL 1190 Query 1177 HPADSAPMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQLTH--DGLTEAELKAALWELI 1234 H AD A +TL EP + ++AH+A+L +L GGA+FFRQL+ +A L AALW+L+ Sbjct 1191 HLADQAHLTLPEPQPFEHSEAHQAVLDALAPGGAWFFRQLSDAVGSTNDAALSAALWDLV 1250 Query 1235 WAGRVTGDTFAPVRAVLGGAGTRKRAAPAHGGHRP-PRLSRYRLTHAQARNADPTVAGRW 1293 WAGR++ DT P+RA+ + PAH RP PR R +R+ P AGRW Sbjct 1251 WAGRISNDTLTPLRALT------RSGTPAHRTRRPAPRAGR------PSRSGPPETAGRW 1298 Query 1294 SALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQR 1353 + LP + D+T RAH AE LL+RHGV+T+ AV +E V GGFA +YKVLSAFED+GRC+R Sbjct 1299 ALLPALDTDTTRRAHATAERLLDRHGVVTRGAVVSERVPGGFAAVYKVLSAFEDSGRCRR 1358 Query 1354 GYFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSA 1413 GYF+ LG AQF A VDRLR++ + + A LAA DPANPYGAALPWP +S Sbjct 1359 GYFVAGLGAAQFGTAGAVDRLRTFSEVA--AEAKPTAAALAATDPANPYGAALPWPETSG 1416 Query 1414 DGTARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVAS 1473 RPGRKAGA+VVLVDG L ++ERGGR+LLT++D+P+ A LA+ G + Sbjct 1417 H---RPGRKAGAMVVLVDGVLTLYVERGGRTLLTWSDEPDRLGPATASLAEAARRGSLGR 1473 Query 1474 ILVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 + VERADG +L G ++ AL AAGFV TP+GLR R Sbjct 1474 MTVERADGEQLLGSG--STPLRAALQAAGFVATPKGLRLR 1511 >gi|296138743|ref|YP_003645986.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162] gi|296026877|gb|ADG77647.1| DEAD/H associated domain protein [Tsukamurella paurometabola DSM 20162] Length=1493 Score = 1621 bits (4197), Expect = 0.0, Method: Compositional matrix adjust. Identities = 934/1529 (62%), Positives = 1086/1529 (72%), Gaps = 58/1529 (3%) Query 6 PSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDS 65 P AL F+ T +WF +FAAPTAAQA AWA+IA G NTLV+APTGSGKTL+AFLWALD Sbjct 2 PDALRAFTPATAEWFDESFAAPTAAQAQAWASIAKGRNTLVVAPTGSGKTLSAFLWALDR 61 Query 66 LAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRS 125 LA + P ERP+ T VLY+SPLKALAVDVERNLR PL+G+ R+ R+G PAP+I VGVRS Sbjct 62 LAETAP-PERPSGTSVLYISPLKALAVDVERNLRAPLSGIARVRARRGEPAPEISVGVRS 120 Query 126 GDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAH 185 GDTP RR+L+ PPDVLITTPESLFLMLTS AR+TL GV TVI+DE+HA+A TKRG H Sbjct 121 GDTPAQQRRKLIRTPPDVLITTPESLFLMLTSQARETLAGVHTVIVDEVHAVAGTKRGTH 180 Query 186 LALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVP 245 LALSLERLD L R AQRIGLSATV P +E+A FL G P T+V PP+ K +L+V VP Sbjct 181 LALSLERLDALLERP-AQRIGLSATVEPAQEVAAFLGGPRPATVVRPPSEKEFDLTVTVP 239 Query 246 VPDMANL-----------TDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNE 294 VPDM L ++WP VEA +VDLI H STIVFANSRRLAERLTAR+NE Sbjct 240 VPDMTELDVIPGDEDEPVQQGSLWPHVEAAIVDLIGRHRSTIVFANSRRLAERLTARINE 299 Query 295 IHAARCGIEL-APDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDL 353 + A G+ AP N VAGGAPA ++ SGQ+ GA VLARAHHGS+SKEQRA++E+DL Sbjct 300 LAA---GVHTGAP--NPTVAGGAPAQVLASGQSHGAEAVLARAHHGSVSKEQRAIIEDDL 354 Query 354 KRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPK 413 K G+L+ VVATSSLELGIDMGAVDLVIQV+APPSVA+GLQR+GRAGHQVGE SRGV FPK Sbjct 355 KSGRLRCVVATSSLELGIDMGAVDLVIQVEAPPSVAAGLQRVGRAGHQVGEPSRGVFFPK 414 Query 414 HRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAP 473 HRTDLL V+VQRM G IE + VP NPLD+LAQ TVAAAA++ LD W VRRA P Sbjct 415 HRTDLLHSTVTVQRMREGAIEKLSVPRNPLDVLAQQTVAAAAMDVLDVHDWLALVRRAHP 474 Query 474 FATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPD 533 +A LP S +EA LDLLSG+YPS +F ELRPRLV+DRD GTLT RPGA RLAVTSGGAIPD Sbjct 475 YAALPDSAYEAVLDLLSGRYPSEDFGELRPRLVWDRDAGTLTGRPGAGRLAVTSGGAIPD 534 Query 534 RGLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPA 593 RGLF V++ E+ SRVGELDEEMVYESR GDV +LGATSWRI EITHDRVLV PA GQP Sbjct 535 RGLFGVFMVGEKASRVGELDEEMVYESRVGDVFALGATSWRIEEITHDRVLVSPAFGQPG 594 Query 594 RLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQR 653 RLPFW GD GRPAELG A+G T E AL + +G D+ATDNL LLD+Q Sbjct 595 RLPFWVGDTVGRPAELGRAIGRFTREFTALSGPDRSAQAGAVGLGDWATDNLVALLDEQE 654 Query 654 TATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTA 713 AT V+PTD TL+VERFRDELGDWRV LHSP +RVH P LA+G RL +RYGI TA Sbjct 655 QATGVLPTDRTLVVERFRDELGDWRVALHSPLSMRVHAPWGLAIGARLTERYGISGAVTA 714 Query 714 SDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALL 773 +D+GIVVRLPDT +D+PPGAELF FD DEID +VT V SALFASRFRE AARALL Sbjct 715 TDDGIVVRLPDT----DDAPPGAELFRFDPDEIDGLVTDAVGSSALFASRFRECAARALL 770 Query 774 LPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIA 833 LPRR PG+RSPLWQQRQRA++LLEVAR Y FPIVLE VRECLQDVYDVP LV + + Sbjct 771 LPRRDPGKRSPLWQQRQRASQLLEVARNYSQFPIVLEAVRECLQDVYDVPELVAVHRSLQ 830 Query 834 QRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVE 893 R +R+AE ET PSPFAASLLF YVGAFMYEGD PLAERRAA L+LD +L++LLGRVE Sbjct 831 SRALRIAEVETVTPSPFAASLLFSYVGAFMYEGDAPLAERRAAVLSLDPAVLSQLLGRVE 890 Query 894 LRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWL 953 L ELLD D++ + QLQ A+ AR E VADL+R LGPL EIA R+ + + Sbjct 891 LTELLDADILDEVAAQLQRTASGYRARTLEQVADLIRELGPLGRAEIADRSEGVDPVRAV 950 Query 954 DGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRY 1013 D L A RA G W AVED RLRDG+G + G+ +FTEAV DP+G+L+ RY Sbjct 951 DELIDAGRAFGY---GDGWIAAVEDAARLRDGLGVPLQPGIAQAFTEAVPDPIGDLVARY 1007 Query 1014 ARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGE-QWCDAEV 1072 AR H PFT A R+GLG+ V L L S R+V G F+A + AG Q+CDAEV Sbjct 1008 ARRHGPFTAIQVARRYGLGVAVVHRALADLVSGRRVVEGRFIALDETEAGDSPQFCDAEV 1067 Query 1073 LRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASA 1132 LR +R+RSLA LR EPV AY FL AW H+ A G+DG+A V+DQLAGV IPASA Sbjct 1068 LRRIRQRSLARLRHDVEPVPERAYAEFLAAWHHLRAPLRGVDGVATVVDQLAGVPIPASA 1127 Query 1133 IEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEI 1192 E LVL R+ DY+PAMLDEL +G+V W+G G+I DGWIA HPAD AP+T+A P + Sbjct 1128 WETLVLPQRVHDYTPAMLDELTGTGEVVWTGHGAIGAQDGWIAFHPADLAPLTVAPPDAL 1187 Query 1193 DFTDAHRAILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLG 1252 D TDAH AI ++ GGAYF+RQL G T ALW+L+WAGR+TGDTFAPVRA L Sbjct 1188 DLTDAHVAIEDAVRGGGAYFYRQLA--GAT----PEALWDLVWAGRLTGDTFAPVRARLA 1241 Query 1253 GAGTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWS--ALPLPEPDSTLRAHYQ 1310 G G R A HR PR + P V GRWS P D T+R+H Sbjct 1242 G-GRRATA------HRSPRRPPRARFRMPVEQSPPMVGGRWSLPPAPPEADDPTVRSHTL 1294 Query 1311 AELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVAST 1370 AE LL R+GV+T+ AV AE V GGFA +Y+ L+AFE++G+ +RGYFIE LG AQFA T Sbjct 1295 AEQLLERYGVVTRGAVMAEHVEGGFARVYRTLAAFEESGKARRGYFIERLGAAQFARNGT 1354 Query 1371 VDRLR---SYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGT---ARPGRKAG 1424 VD LR + L D +VLAA DPANP+GAALPWP S G ARPGRK G Sbjct 1355 VDALRDAATALQRSDERGEPAPPLVLAATDPANPFGAALPWPERSPSGDTPGARPGRKPG 1414 Query 1425 ALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPV 1484 A+VVL DG LA F+ERGGR+LLTFTD PEA AA A R+ + +++ DG P Sbjct 1415 AVVVLADGALAAFVERGGRTLLTFTDAPEAAFAALA-----EAAPRLGGLTIDKIDGAPA 1469 Query 1485 LQPGGRASAALTALLAAGFVRTPRGLRRR 1513 L S AL AAGF +TP+GLR R Sbjct 1470 L-----TSPLAGALAAAGFAKTPKGLRVR 1493 >gi|323357449|ref|YP_004223845.1| Lhr-like helicase [Microbacterium testaceum StLB037] gi|323273820|dbj|BAJ73965.1| Lhr-like helicase [Microbacterium testaceum StLB037] Length=1577 Score = 1617 bits (4186), Expect = 0.0, Method: Compositional matrix adjust. Identities = 903/1580 (58%), Positives = 1089/1580 (69%), Gaps = 96/1580 (6%) Query 9 LSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSL-- 66 L RF T+DWF F+APT AQ AW +++ G N LV+APTGSGKTL+AFL+A+D + Sbjct 5 LDRFGPATQDWFRGAFSAPTNAQKGAWESVSSGRNALVVAPTGSGKTLSAFLFAIDRIFR 64 Query 67 -------------AGSEPMSERPAA-TRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQ 112 G + + PA TRVLY+SPLKAL VDVERNLR+PL G+ + A R Sbjct 65 EKTPEIPDAEPPRRGKKAAPKAPATNTRVLYISPLKALGVDVERNLRSPLVGIGQSARRL 124 Query 113 GLPAPQIRVGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIID 172 G+ P + VGVRSGDT + RR+LV+ PPD+LITTPESL+LMLTS A +TL GV TVIID Sbjct 125 GIQVPGVTVGVRSGDTSSSDRRKLVTDPPDILITTPESLYLMLTSQAAETLRGVHTVIID 184 Query 173 EIHAIAATKRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAP 232 E+HA+AATKRGAHLA+SLERLD L + AQRIGLSATVRP +E+ARFL G P IVAP Sbjct 185 EVHAVAATKRGAHLAVSLERLDALLEKP-AQRIGLSATVRPIDEVARFLGGAQPVDIVAP 243 Query 233 PAAKTVELSVQVPVPDMANL------------TDN--------------TIWPDVEARLV 266 A K +LSV VP+ DM N TD ++WP VE +V Sbjct 244 KATKAFDLSVVVPIEDMLNPPPPPGSPAPDEATDGEWFSERPESTEMAGSVWPHVEEAIV 303 Query 267 DLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELAPDT--------------NQQV 312 D I STIVF+NSRRLAERLT RLNEI+A R GI++ T Sbjct 304 DRILERRSTIVFSNSRRLAERLTGRLNEIYAERVGIDVPEPTVPAAMWVHRAEAPGGANA 363 Query 313 AGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLELGID 372 G + +G T G +LA+AHHGS+SKEQRA VE++LK G L+ VVATSSLELGID Sbjct 364 PAGGASGGAQAGSTAGVSAILAKAHHGSVSKEQRAQVEDELKSGALRCVVATSSLELGID 423 Query 373 MGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRMLAGE 432 MGAVDLVIQV+APPS ASGLQR+GRAGHQVGE+SR LFPKHR+D+L AV +RMLAG Sbjct 424 MGAVDLVIQVEAPPSAASGLQRVGRAGHQVGEVSRAALFPKHRSDVLHTAVVTERMLAGR 483 Query 433 IETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRSLFEATLDLLSGK 492 IE + VP NPLDILAQ TVAAAAL +D + WFDTV+R+APF +LPRS +EATLDLL+G+ Sbjct 484 IEAIAVPQNPLDILAQQTVAAAALGSIDVEEWFDTVKRSAPFRSLPRSAYEATLDLLAGR 543 Query 493 YPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLATE-RPSRVGE 551 YPS EFAELRPRLV+DRD GTLT RPGAQR+AVTSGG IPDRGLF V++A E + +RVGE Sbjct 544 YPSDEFAELRPRLVWDRDAGTLTGRPGAQRIAVTSGGTIPDRGLFGVFVAGESQNARVGE 603 Query 552 LDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRGDDAGRPAELGA 611 LDEEMVYESR DV +LG TSWRI EITHDRV V+PA GQP +LPFW GD GRPAELG Sbjct 604 LDEEMVYESRVNDVFTLGTTSWRIVEITHDRVNVLPAFGQPGKLPFWHGDGIGRPAELGE 663 Query 612 ALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDSTLLVERFR 671 ALG + +LA ++ R G DD A NL L +QR AT +PTD TL VER R Sbjct 664 ALGKFSRDLAGAEQAKAEERLRESGLDDNAITNLLSYLAEQREATGSLPTDRTLTVERSR 723 Query 672 DELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPDTVSAGED 731 DE+GDWR+ILHSPYG++VH P ALAV R+R+R G++ ASD+GI+ R+PD + Sbjct 724 DEVGDWRIILHSPYGMQVHSPWALAVNARIRERLGVEGAAVASDDGIIARVPDAAA---- 779 Query 732 SPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSPLWQQRQR 791 PPGA+LFVF+ DE++ IVT EV GSALFASRFRE AARALLLPR +P RRSPLWQQRQR Sbjct 780 EPPGADLFVFEPDELEQIVTDEVGGSALFASRFRECAARALLLPRLNPNRRSPLWQQRQR 839 Query 792 AARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEAETAKPSPFA 851 +A+LLEVA+++P FPI+LET+RE LQDVYD+P L+ + +I +RR+R+ E T++PSP+A Sbjct 840 SAQLLEVAKRHPSFPIILETLREVLQDVYDLPALLRVTRQIGERRIRLVEITTSQPSPYA 899 Query 852 ASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDVIAATSRQLQ 911 LLFGYVGAFMYEGD+PLAERRAAAL++D LL+ELLG+VE+RELLDP+VIA R+ Q Sbjct 900 RDLLFGYVGAFMYEGDSPLAERRAAALSVDPALLSELLGKVEMRELLDPEVIAQFEREAQ 959 Query 912 HLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAP-----EVSGWLDGLRAAKRALVVS 966 L DR AR EGVADLLR+LGPL E+AAR A E L L +RA+ V+ Sbjct 960 RLDPDRRARGVEGVADLLRILGPLDATEVAARLDAESDALTEAEQHLATLVDDRRAIRVT 1019 Query 967 FAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAAAA 1026 G S +ED GRLRD +GAA+PVG+P +F E +ADPLG+L+ RYARTH PFTT A A Sbjct 1020 IGGVSRVAGIEDAGRLRDALGAALPVGIPNAFLEPLADPLGDLVARYARTHAPFTTDAVA 1079 Query 1027 ARFGLGLRVTADVLGRLASDGRLVRGEFVAAAKGSAGGE--QWCDAEVLRILRRRSLAAL 1084 R G+G+ V L RL S GRL G F+ A G + G+ +WCD EVLR LR RSLAA+ Sbjct 1080 ERLGVGIAVARLTLQRLESQGRLASGFFLPEASGGSRGDDTEWCDVEVLRRLRMRSLAAI 1139 Query 1085 RAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAPRIRD 1144 R EPV AAY RFLP WQH+ GIDG+ AVI+QLAGV IPASA E LVL R+RD Sbjct 1140 RGSVEPVPPAAYARFLPVWQHLGRPLEGIDGVLAVIEQLAGVPIPASAWESLVLPSRVRD 1199 Query 1145 YSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTL---AEPAEIDFTDAHRAI 1201 YSPA+LDEL A+G+V WSG G++ G DGWIALHPA++AP TL +P + I Sbjct 1200 YSPALLDELTATGEVVWSGHGTLPGRDGWIALHPAEAAPFTLQDPDDPDDPAPDSLEARI 1259 Query 1202 LASLGTGGAYFFRQLTHDGLTEAE--LKAALWELIWAGRVTGDTFAPVRAVLGGAGTRK- 1258 LA+L GGAYF QL E E + ALW L WAGRVT DTFAPVR +L G G Sbjct 1260 LAALEGGGAYFAAQLKQLAGAENEQSVNDALWALTWAGRVTNDTFAPVRTLLSGGGQSHR 1319 Query 1259 -----RAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAEL 1313 A + G PR A + P++ GRWS LP EPD+ RA A L Sbjct 1320 VARRAPRARMYRGATMPR--------ATSAPRPPSLGGRWSLLPDREPDAAARATATASL 1371 Query 1314 LLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDR 1373 LL+R+GV+T+ AV +EGV GGFA +Y++L+ FE+AG C+RGY IE LG AQFA ++TVDR Sbjct 1372 LLDRYGVVTRGAVQSEGVPGGFAQVYRILAGFEEAGHCRRGYVIEKLGAAQFAASATVDR 1431 Query 1374 LRSYLDGVDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGE 1433 LR + DP P AV LAA DPANPYGAAL WP T RPGRKAG LVVLVDGE Sbjct 1432 LREFAAVADP--PPLRAVTLAATDPANPYGAALGWPGIEGV-THRPGRKAGGLVVLVDGE 1488 Query 1434 LAWFLERGGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASA 1493 L +LERGGR+ L FTDD AAA LA+ R+ ++ +E+ +G V +A Sbjct 1489 LTLYLERGGRTALAFTDDEARLAAAATDLAETAKRRRLETLTIEQVNGEFVY-----GTA 1543 Query 1494 ALTALLAAGFVRTPRGLRRR 1513 AL AGFV +P+GL R Sbjct 1544 VGRALRTAGFVESPKGLTLR 1563 >gi|297156755|gb|ADI06467.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis BCW-1] Length=1535 Score = 1616 bits (4184), Expect = 0.0, Method: Compositional matrix adjust. Identities = 911/1554 (59%), Positives = 1098/1554 (71%), Gaps = 72/1554 (4%) Query 8 ALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLA 67 AL FS TR WF F APTAAQ AW AI +G + LV+APTGSGKTLAAFL ALD LA Sbjct 5 ALDGFSPATRGWFAGAFTAPTAAQEGAWRAIGEGSDVLVVAPTGSGKTLAAFLAALDRLA 64 Query 68 GSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGD 127 + P +E RVLY+SPLKALAVDVERNLR+PL G+ + + R GLP P+IRVGVRSGD Sbjct 65 STPPPAEARRRCRVLYISPLKALAVDVERNLRSPLTGIRQESVRLGLPEPEIRVGVRSGD 124 Query 128 TPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHLA 187 TP A RR LVS+PPD+LITTPESLFLMLTS+AR+ L GV+TVI+DE+HA+A TKRGAHLA Sbjct 125 TPAAERRALVSRPPDILITTPESLFLMLTSSAREALRGVETVILDEVHAVAGTKRGAHLA 184 Query 188 LSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVP 247 LSLERLD+L +R A+RIGLSATVRP +E+ARFLS + IV PP+ K +LSV VPV Sbjct 185 LSLERLDELLNRP-ARRIGLSATVRPVDEVARFLSPRRRVEIVQPPSGKEFDLSVVVPVE 243 Query 248 DMANLTDN--------------TIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLN 293 D+ L + +IWP VE R+ DL+++H STIVFANSRRLAERL RLN Sbjct 244 DLGELGGSPVQDGSDGNTGEKPSIWPHVEERIADLVQAHRSTIVFANSRRLAERLCNRLN 303 Query 294 EIHAARCGIELAPDTNQQVAGGAPAHIMG-SGQTFGAPPVLARAHHGSISKEQRAVVEED 352 EI R E P+ + +PA +M SG GAP +LARAHHGS+SKEQRA+VEED Sbjct 304 EIAYERATGEALPEDH------SPAELMAESGAAKGAPALLARAHHGSVSKEQRALVEED 357 Query 353 LKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFP 412 LK G+L AVVATSSLELGIDMGAVDLV+QV++PPSVASGLQR+GRAGHQVG +S GV+FP Sbjct 358 LKAGRLPAVVATSSLELGIDMGAVDLVVQVESPPSVASGLQRVGRAGHQVGAVSTGVVFP 417 Query 413 KHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAA 472 K+R DL+ AV +RM G IE++RVPANPLD+LAQ VA A++ D D VRRAA Sbjct 418 KYRGDLVQAAVVTERMREGAIESLRVPANPLDVLAQQLVAMTAVDTWDVDELLALVRRAA 477 Query 473 PFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIP 532 PFA LP S + + LD+L+G+YPS FAELRPRLV+DR GT+T RPGAQRLAVTSGG IP Sbjct 478 PFAALPESAYISVLDMLAGRYPSDAFAELRPRLVWDRVAGTVTGRPGAQRLAVTSGGTIP 537 Query 533 DRGLFAVYLATERPS----RVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPA 588 DRGLF V+LA P RVGELDEEMVYESR GDV +LG TSWRI +IT DRV+V PA Sbjct 538 DRGLFGVFLAGADPKKGGGRVGELDEEMVYESRVGDVFTLGTTSWRIEDITRDRVVVTPA 597 Query 589 PGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRL 648 PG P RLPFW+GD GRP ELG ALGA E+ + A R G D +A DN+ Sbjct 598 PGVPGRLPFWKGDQLGRPLELGRALGAFLREIGGMTPEAARERLLAAGLDAWAADNVLSY 657 Query 649 LDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGID 708 LD+QR A VP D T++VERFRDELGDWRV++HSP+G +VH P ALA+G RL +R+G+D Sbjct 658 LDEQRRACGHVPDDRTIVVERFRDELGDWRVVIHSPFGAQVHAPWALALGTRLAERFGLD 717 Query 709 EKPTASDNGIVVRLPDTVSAG-----------------EDSPPGAELFVFDADEIDPIVT 751 + +D+GIV+RLPD G E S GA FD DE+ IVT Sbjct 718 AQAMHADDGIVLRLPDADLMGLDLLDGDPMAQGREYDFEQSAVGAADVAFDKDEVSQIVT 777 Query 752 TEVAGSALFASRFRESAARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLET 811 +V GSALFASRFRE AARALLLPRR+PG+R+PLWQQRQRAA+LL+VA ++ FPIVLE Sbjct 778 DQVGGSALFASRFRECAARALLLPRRNPGKRTPLWQQRQRAAQLLQVASEFGSFPIVLEA 837 Query 812 VRECLQDVYDVPILVELMARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLA 871 VRECLQDV+DVP L ELM + RRVR+ E T +PSPFA SLLFGYV F+YEGD+PLA Sbjct 838 VRECLQDVFDVPGLTELMGDLESRRVRLVEVTTPEPSPFARSLLFGYVAQFLYEGDSPLA 897 Query 872 ERRAAALALDGTLLAELLGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRL 931 ERRAAAL+LD LLAELLG+ ELRELLD DV+A R+LQ L DR +DAEGVADLLRL Sbjct 898 ERRAAALSLDSRLLAELLGQAELRELLDADVLAELERELQWLTDDRRVKDAEGVADLLRL 957 Query 932 LGPLTEDEIAARAGAPEVSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVP 991 LGPLT+ E+A R P+ W L A+RA+ V AG+ W AVED GRLRD +G A+P Sbjct 958 LGPLTDAELAERGADPQ---WARDLSGARRAIRVRIAGQDHWAAVEDAGRLRDALGTALP 1014 Query 992 VGLPASFTEAVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVR 1051 VG+P +FTE V DPLG+LL R+ARTH PFT+A AAARFGLG VT L LA+ GR+V+ Sbjct 1015 VGVPEAFTEPVKDPLGDLLARFARTHGPFTSAQAAARFGLGTAVTDGALHGLAASGRIVQ 1074 Query 1052 GEFVAAAKGSAGGEQWCDAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGN- 1110 GEF A ++WCDA VLR LRRRSLAALR + EPV AA FLP WQH+ + Sbjct 1075 GEFAPAGV----SQEWCDAAVLRRLRRRSLAALRHELEPVPPAALAAFLPRWQHLGTHSL 1130 Query 1111 SGIDGLAAVIDQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGS 1170 GIDGL I+QL G +PASA+E LVL R+ DY+P MLDEL ASG+V W+GAG++ G Sbjct 1131 RGIDGLVRAIEQLQGAPVPASALEKLVLPSRVSDYTPTMLDELTASGEVVWAGAGALPGK 1190 Query 1171 DGWIALHPADSAPMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQLT-------HDGLTE 1223 DGW+ LH A++AP+ L P ++ + H+A+L +L G FFRQ+ HD + + Sbjct 1191 DGWVTLHLAEAAPLLLHAPHPLEISPLHQAVLDTLAGGYGLFFRQIAEHVRAAGHD-VQD 1249 Query 1224 AELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRAAPAHGGHRPPRLSRYRLTHAQ-- 1281 +L +W+L W+GR+TGDT AP+RA++G R + AH R RY A+ Sbjct 1250 PQLAEVVWDLAWSGRLTGDTLAPLRALMGSG--RTAGSTAHRARRAVPRGRYGSLTARPT 1307 Query 1282 -ARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYK 1340 +RN PTVAGRWS LP EP+ T RAH A LL+RHGV+T+ AVAAEGV GGF+ Y+ Sbjct 1308 ASRNGPPTVAGRWSLLPEREPEPTHRAHALARTLLDRHGVVTRGAVAAEGVEGGFSAAYR 1367 Query 1341 VLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDGVDPEQPDYHAVVLAAADPAN 1400 VLSAFED+G+ +RGY +E LG AQFA+ VDRLR+ D P AV+LAAADPAN Sbjct 1368 VLSAFEDSGQARRGYVVEGLGAAQFAMDGAVDRLRAVSTARDTGDPARRAVLLAAADPAN 1427 Query 1401 PYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPEANHAAAI 1460 YGAALPWP AD T RPGRKAG+LVVLVDGEL+ ++ERGG++LL + DD + A + Sbjct 1428 AYGAALPWPDPPADATHRPGRKAGSLVVLVDGELSLYMERGGKTLLAWCDDTRIDAAVEV 1487 Query 1461 GLADLVTAGRVASILVERADGMPVL-QPGGRASAALTALLAAGFVRTPRGLRRR 1513 LA AG + ++ VER +G L P GR AL AAGF TPRGLR R Sbjct 1488 -LAQAARAGSLGTVTVERVNGAAALSSPTGR------ALEAAGFHPTPRGLRLR 1534 >gi|345009751|ref|YP_004812105.1| DEAD/H associated domain-containing protein [Streptomyces violaceusniger Tu 4113] gi|344036100|gb|AEM81825.1| DEAD/H associated domain protein [Streptomyces violaceusniger Tu 4113] Length=1557 Score = 1610 bits (4168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 909/1572 (58%), Positives = 1089/1572 (70%), Gaps = 87/1572 (5%) Query 7 SALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSL 66 SAL FS TR WFT F APT AQ AW AI +G + LV+APTGSGKTLAAFL +LD L Sbjct 7 SALDAFSPATRGWFTGAFTAPTPAQEGAWRAIGEGSDVLVVAPTGSGKTLAAFLASLDRL 66 Query 67 AGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSG 126 AG P +E RVLYVSPLKALAVDVERNLR+PL G+ + A R G P P+IRVG RSG Sbjct 67 AGEPPPAEAKKRCRVLYVSPLKALAVDVERNLRSPLTGIRQEAVRLGRPEPEIRVGTRSG 126 Query 127 DTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHL 186 DTP A RR L ++PPD+LITTPESLFLMLTSA R+ L GV+TVI+DE+HA+A TKRGAHL Sbjct 127 DTPAAERRALATRPPDILITTPESLFLMLTSATREALRGVETVILDEVHAVAGTKRGAHL 186 Query 187 ALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPV 246 ALSLERLD+L R A+RIGLSATVRP +E+ARFLS + IV PP+ K +LSV VPV Sbjct 187 ALSLERLDELLDRP-ARRIGLSATVRPVDEVARFLSPRRKVEIVQPPSGKEFDLSVVVPV 245 Query 247 PDMANLTDN-----------TIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEI 295 D+ L + +IWP VE R+ DL+++H STIVFANSRRLAERL RLNEI Sbjct 246 EDLGELGGSPAQEGEAGERPSIWPHVEERITDLVQAHRSTIVFANSRRLAERLCNRLNEI 305 Query 296 HAARCGIELAPDTNQQVAGGAPAHIMG-SGQTFGAPPVLARAHHGSISKEQRAVVEEDLK 354 R E P+ + +PA +M +G GAPP+LARAHHGS+SKEQRA+VEEDLK Sbjct 306 AYERATGEALPEDH------SPAELMAEAGAARGAPPLLARAHHGSVSKEQRALVEEDLK 359 Query 355 RGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKH 414 G+L AVVATSSLELGIDMGAVDLV+QV++PPSVASGLQR+GRAGHQVG +S GV+FPK+ Sbjct 360 AGRLPAVVATSSLELGIDMGAVDLVVQVESPPSVASGLQRVGRAGHQVGAVSTGVVFPKY 419 Query 415 RTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPF 474 R DL+ AV +RM G IE++RVPANPLD+LAQ +A A++ D D +RRAAPF Sbjct 420 RGDLVQAAVVTERMREGAIESLRVPANPLDVLAQQIIAITAMDTWDVDELLALIRRAAPF 479 Query 475 ATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDR 534 A+LP S + + LD+L+G+YPS FAELRPRLV+DR T+T RPGAQRLAVTSGG IPDR Sbjct 480 ASLPESAYTSVLDMLAGRYPSDAFAELRPRLVWDRVAHTVTGRPGAQRLAVTSGGTIPDR 539 Query 535 GLFAVYLATERPS----RVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPG 590 GLF V+LA P RVGELDEEMVYESR GDV +LG TSWRI +IT DRVLV PAPG Sbjct 540 GLFGVFLAGADPKKGGGRVGELDEEMVYESRVGDVFTLGTTSWRIEDITRDRVLVSPAPG 599 Query 591 QPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLD 650 P RLPFW+GD GRP ELG ALGA E+ AL R G D +A +N+ LD Sbjct 600 VPGRLPFWKGDQLGRPLELGRALGAFLREVGALRPEDARLRLLAAGLDAWAAENVIGYLD 659 Query 651 DQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEK 710 +QR A VP D T++VERFRDELGDWRV++HSP+G +VH P ALA+G RL +RYGID + Sbjct 660 EQRRACGHVPDDRTIVVERFRDELGDWRVVVHSPFGAQVHAPWALALGSRLSERYGIDAQ 719 Query 711 PTASDNGIVVRLPDTVSAGED-----------------SPPGAELFVFDADEIDPIVTTE 753 +D+GIV+RLPD G D SP GA FD EI+ IVT + Sbjct 720 VMHADDGIVLRLPDADLMGLDLLDADPMRQGVEYDTDQSPVGAADVAFDKGEINQIVTDQ 779 Query 754 VAGSALFASRFRESAARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVR 813 V GSALFASRFRE AARALLLPRR PG+R+PLWQQRQRAA+LL+VA ++ FPIVLE VR Sbjct 780 VGGSALFASRFRECAARALLLPRRDPGKRTPLWQQRQRAAQLLQVASEFGSFPIVLEAVR 839 Query 814 ECLQDVYDVPILVELMARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAER 873 ECLQDV+DVP L ELM I RRVR+ E T +PSPFA SLLFGYV F+YEGD+PLAER Sbjct 840 ECLQDVFDVPGLTELMGDIEARRVRLVEVTTPEPSPFARSLLFGYVAQFLYEGDSPLAER 899 Query 874 RAAALALDGTLLAELLGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLG 933 RAAAL+LD LLAELLG+ ELRELLD DV+A +LQ L DR +DAEGVAD+LRLLG Sbjct 900 RAAALSLDARLLAELLGQAELRELLDADVLAELEHELQWLTEDRRIKDAEGVADVLRLLG 959 Query 934 PLTEDEIAARAGAPEVSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVG 993 PLT E+ R P GW + L A+RA+ V AG W AVED GRLRD +G A+PVG Sbjct 960 PLTAAELTERGAEP---GWAEDLAGARRAIRVRIAGEDHWTAVEDAGRLRDALGTALPVG 1016 Query 994 LPASFTEAVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGE 1053 +P +FTE V DPLG+LL RYARTH PFT+A AAARFGLG+ VT L RLA+DGR+V+GE Sbjct 1017 VPEAFTEPVKDPLGDLLARYARTHGPFTSAQAAARFGLGVAVTEGALHRLAADGRVVQGE 1076 Query 1054 FVAAAKGSAGGEQWCDAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGN-SG 1112 F S G++WCDA VLR LRRRSLAALR + EPV +A FLP WQH+ + G Sbjct 1077 F----HPSGIGQEWCDATVLRRLRRRSLAALRHELEPVPPSALAAFLPQWQHLGTHSLRG 1132 Query 1113 IDGLAAVIDQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDG 1172 IDGL I+QL G +PASA+E LVL R+ DY+P MLDEL ASG+V W+GAG++ G DG Sbjct 1133 IDGLVRAIEQLQGAPVPASALEKLVLPSRVSDYAPTMLDELAASGEVVWAGAGALPGKDG 1192 Query 1173 WIALHPADSAPMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQLTHDG------LTEAEL 1226 W+ LH AD+AP+ L P ++ H+A+L SL G FFRQ+ + +L Sbjct 1193 WVTLHLADTAPLLLHTPHPLEAGPLHQAVLDSLAGGYGLFFRQIAEQARAAGHEFQDPQL 1252 Query 1227 KAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRAAPAHGGHRPPRLSRYRLTHAQ----- 1281 ALW+L+W+GRVTGDT AP+R++LG R + AH R RY + Sbjct 1253 AEALWDLVWSGRVTGDTLAPLRSLLGSG--RTAGSTAHRAKRTVPRGRYGGLTGRTGRPT 1310 Query 1282 -ARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYK 1340 +RN PTVAGRWS LP EP+ T RAH A LL+RHGV+T+ AVAAEGV GGF+ Y+ Sbjct 1311 ASRNGPPTVAGRWSLLPEREPEPTHRAHALARTLLDRHGVVTRGAVAAEGVEGGFSAAYR 1370 Query 1341 VLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDGVD---------PEQPDYHAV 1391 VLSAFE+ G+ +RGY +E LG AQFA+ VDRLR+ D A Sbjct 1371 VLSAFEETGQARRGYVVEGLGAAQFAMDGAVDRLRAVSTARDRTAVPAFDGQRGQSRRAF 1430 Query 1392 VLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLERGGRSLLTFTD- 1450 VLA+ADPAN YGAALPWP AD RPGRKAGA+VVLVDGELA ++ERGG++LL + Sbjct 1431 VLASADPANAYGAALPWPDPPADAGHRPGRKAGAMVVLVDGELALYMERGGKTLLAWPSG 1490 Query 1451 -----DPEANH---AAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALL-AA 1501 PE + A LA+ AG + S+ VER +G+ L S+ + LL +A Sbjct 1491 EAEAASPEDDARLWTAVESLAESARAGALGSVTVERVNGVQAL------SSPIGKLLESA 1544 Query 1502 GFVRTPRGLRRR 1513 GF TPRG R R Sbjct 1545 GFHPTPRGFRLR 1556 >gi|239991206|ref|ZP_04711870.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 11379] Length=1561 Score = 1596 bits (4132), Expect = 0.0, Method: Compositional matrix adjust. Identities = 916/1573 (59%), Positives = 1091/1573 (70%), Gaps = 82/1573 (5%) Query 7 SALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSL 66 SAL FS TR WF F+APTAAQ AW AI +G N LV+APTGSGKTLAAFL ALD L Sbjct 4 SALDAFSPATRSWFAGAFSAPTAAQEGAWRAIGEGSNVLVVAPTGSGKTLAAFLAALDRL 63 Query 67 AGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSG 126 A P ++ RVLYVSPLKALAVDVERNLR+PL G+ + + R GLP P++RVG+RSG Sbjct 64 AAEPPPADAKKRCRVLYVSPLKALAVDVERNLRSPLTGIRQESVRLGLPEPEVRVGIRSG 123 Query 127 DTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAHL 186 DTPPA RR +V++PPD+LITTPESLFLMLTS+AR L GV+TVI+DE+HA+A TKRGAHL Sbjct 124 DTPPAERRSMVTRPPDILITTPESLFLMLTSSARDALAGVETVILDEVHAVAGTKRGAHL 183 Query 187 ALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPV 246 ALSLERLD+L +R A+RIGLSATVRP +E+ARFLS Q IV P + K +LSV VPV Sbjct 184 ALSLERLDELLARP-ARRIGLSATVRPVDEVARFLSPQRKVEIVQPRSTKEFDLSVVVPV 242 Query 247 PDMANL-----TDN--------TIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLN 293 D+ L TD +IWP VE R+ DL++SH STIVFANSRRLAERL RLN Sbjct 243 EDLGELGGSPATDGDSGQADKPSIWPHVEERIADLVQSHRSTIVFANSRRLAERLCNRLN 302 Query 294 EIHAARC-GIELAPDTNQQV--AGGAPAHIMG-SGQTFGAPPVLARAHHGSISKEQRAVV 349 EI R G PD APA IM SG GAP +LARAHHGS+SKEQRA V Sbjct 303 EIAYERATGTAFDPDDPAPALPEAHAPAEIMAQSGAGKGAPALLARAHHGSVSKEQRAQV 362 Query 350 EEDLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGV 409 EEDLK G+L AVVATSSLELGIDMGAVDLV+QV++PPSVASGLQR+GRAGHQVG +S GV Sbjct 363 EEDLKAGRLPAVVATSSLELGIDMGAVDLVVQVESPPSVASGLQRVGRAGHQVGAVSTGV 422 Query 410 LFPKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVR 469 +FPK+R DL+ AV +RM G IE +R+PANPLD+LAQ VA AL+ AD VR Sbjct 423 VFPKYRGDLVQAAVVTERMREGAIEALRIPANPLDVLAQQLVAMVALDSWQADDLLALVR 482 Query 470 RAAPFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGG 529 RAAPFA+LP S F A LD+L+G+YPS FAELRPR+V+DR GT+T RPGAQRLAVTSGG Sbjct 483 RAAPFASLPESAFTAVLDMLAGRYPSDAFAELRPRVVWDRVGGTVTGRPGAQRLAVTSGG 542 Query 530 AIPDRGLFAVYLATERPS----RVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLV 585 IPDRGLF V+LA P RVGELDEEMVYESR GDV +LG TSWRI +IT DRVLV Sbjct 543 TIPDRGLFGVFLAGADPKKGGGRVGELDEEMVYESRVGDVFTLGTTSWRIEDITRDRVLV 602 Query 586 IPAPGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNL 645 PAPG P RLPFW+GD GRP ELG ALGA E+ L R G D +A DN+ Sbjct 603 SPAPGVPGRLPFWKGDQLGRPLELGRALGAFLREIGGLSDEDARLRLLAAGLDAWAADNI 662 Query 646 WRLLDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRY 705 LD+QR A VP D T+LVERFRDELGDWRV++HSP+G +VH P ALA+ RL +RY Sbjct 663 LAYLDEQRRACGHVPDDRTILVERFRDELGDWRVVVHSPFGAQVHAPWALALSARLGERY 722 Query 706 GIDEKPTASDNGIVVRLPD---------------TVSAGEDSPPGAEL------------ 738 G+D + +D+GIV+RLPD T AG+D PP A L Sbjct 723 GMDAQVMHADDGIVLRLPDADMMGLDLLDFDPPGTSDAGKDDPPPATLAYDSDQPPVAAA 782 Query 739 -FVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSPLWQQRQRAARLLE 797 VFD E+ IVT +V GSALFA+RFRE AARALLLPRR PG+R+PLWQQRQRA++LL+ Sbjct 783 DVVFDQGEVQQIVTDQVGGSALFAARFRECAARALLLPRRSPGKRTPLWQQRQRASQLLQ 842 Query 798 VARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVAEAETAKPSPFAASLLFG 857 VA ++ FPIVLE VRECLQDV+DVP L ELM + RRVR+ E T +PSPFA SLLFG Sbjct 843 VASEFGSFPIVLEAVRECLQDVFDVPGLTELMGDLEARRVRLVEVTTQEPSPFARSLLFG 902 Query 858 YVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDPDVIAATSRQLQHLAADR 917 YV F+YEGD+PLAERRAAAL+LD LLAELLG+ ELRELLDP+V+ R+LQ L DR Sbjct 903 YVAQFLYEGDSPLAERRAAALSLDSHLLAELLGQAELRELLDPEVLTELERELQWLTEDR 962 Query 918 VARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAKRALVVSFAGRSWWVAVE 977 +DAEGVADLLR+LGPLT+ E+A R P W L A+RA+ V AG W A+E Sbjct 963 RVKDAEGVADLLRVLGPLTDAELAERGAEPS---WAPELATARRAIQVRIAGADHWAAIE 1019 Query 978 DMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTA 1037 D GRLRD +G A+PVG+P +FTE V DPLG+LL RYARTH PFT A AA RFGLG VT Sbjct 1020 DAGRLRDALGTALPVGVPEAFTEPVKDPLGDLLARYARTHGPFTAARAAERFGLGTAVTD 1079 Query 1038 DVLGRLASDGRLVRGEFVAAAKGSAGGEQWCDAEVLRILRRRSLAALRAQAEPVSTAAYG 1097 L RL++ GR V+GEF A G++WCDA VLR LRRRSLAALR + EPV AA Sbjct 1080 GALQRLSASGRTVQGEFHPAGI----GQEWCDATVLRRLRRRSLAALRQELEPVPPAALA 1135 Query 1098 RFLPAWQHVSAGN-SGIDGLAAVIDQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLAS 1156 FLP WQH + GIDGLA ++QL G +PASA+E L+L R+ Y+PAMLDEL + Sbjct 1136 SFLPQWQHFGSHRLRGIDGLARAVEQLQGAPVPASALEKLILPSRVLGYTPAMLDELTTT 1195 Query 1157 GDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQL 1216 G+V W+GAG++ G DGW++L+ ADSAP+ L P ++ + H ++L +L G FFRQ+ Sbjct 1196 GEVVWAGAGALPGKDGWVSLYLADSAPLLLPPPHPLELSALHESVLTTLSGGYGLFFRQI 1255 Query 1217 -------THDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRAAPAHGGHRP 1269 TH T+ +L ALWEL W+GR+T DT AP+R++LG R + AH R Sbjct 1256 ADQVRATTHPDCTDQQLADALWELAWSGRLTNDTLAPLRSLLGSG--RTAGSTAHRSRRS 1313 Query 1270 PRLSRYRLTHAQARNAD----PTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGVLTKDA 1325 RY A AR A PTV+GRWS LP EP+ T RAH A LL+RHGV+T+ A Sbjct 1314 VPRGRYGSLTAAARPASRTEPPTVSGRWSLLPSVEPERTHRAHALARTLLDRHGVVTRGA 1373 Query 1326 VAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDGVDPEQ 1385 V AEGV GGF+ Y+VL+AFED+G+ +RGY +E LG AQFA+ VDRLR+ D Sbjct 1374 VQAEGVEGGFSATYRVLAAFEDSGQARRGYVVEGLGAAQFAMDGAVDRLRAASTARDRRD 1433 Query 1386 PDY--HAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLERGGR 1443 PD A+VLAAADPAN YGAALPWP S +PGRKAGALVVLVDGEL ++ERGG+ Sbjct 1434 PDTAPEALVLAAADPANAYGAALPWPESPDGAGHKPGRKAGALVVLVDGELTLYMERGGK 1493 Query 1444 SLLTFTDD--PEANHAAAIGLADLVTAGRVASILVERADGMPVL-QPGGRASAALTALLA 1500 +LL + D A AAA LA AG + ++ VER +G+ L P GR L A Sbjct 1494 TLLAWPSDPEAPALRAAAEALAASARAGALGTVTVERTNGVSSLTSPLGR------TLEA 1547 Query 1501 AGFVRTPRGLRRR 1513 AGF+ TPRGLR R Sbjct 1548 AGFLATPRGLRLR 1560 >gi|86742209|ref|YP_482609.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3] gi|86569071|gb|ABD12880.1| ATP dependent helicase, Lhr family [Frankia sp. CcI3] Length=1567 Score = 1593 bits (4126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 907/1560 (59%), Positives = 1068/1560 (69%), Gaps = 79/1560 (5%) Query 6 PSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDS 65 P L+ FSA TR WF + F A T AQ AW AI G N LV+APTGSGKTLAAFLW+LD+ Sbjct 27 PDPLTAFSAPTRSWFGAAFTAATPAQRGAWEAIRTGGNALVVAPTGSGKTLAAFLWSLDT 86 Query 66 LAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRS 125 LA S P +E RVLYVSPLKALAVDVERNLR PLAG+ A+R GLP P + VG+RS Sbjct 87 LARSAPPAEPTRRCRVLYVSPLKALAVDVERNLRAPLAGIRSAAQRLGLPQPDVTVGLRS 146 Query 126 GDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAATKRGAH 185 GDTP A RR ++PPDVLITTPESLFL+LTSAAR++L GV+TVI+DE+HA+A TKRGAH Sbjct 147 GDTPAAERRGFGTRPPDVLITTPESLFLILTSAARESLRGVRTVIVDEVHAVAGTKRGAH 206 Query 186 LALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVP 245 LALSLERLD L AQRIGLSATVRP EE ARFL G +P +V PPAAKT+++ V VP Sbjct 207 LALSLERLDALLDTP-AQRIGLSATVRPVEEAARFLGGTAPVAVVRPPAAKTLQIDVVVP 265 Query 246 VPDMANLTDN-----------------TIWPDVEARLVDLIESHNSTIVFANSRRLAERL 288 V DM L +IWP VE R++DL+ +H+++IVFANSRRLAERL Sbjct 266 VEDMTQLGGQLLDGSPDGSAASAPHRASIWPAVEQRVLDLVLAHSASIVFANSRRLAERL 325 Query 289 TARLNEIHAARCGIELAPDTNQQVAGG--------APAHIMG-SGQTFGAP--PVLARAH 337 ARLNE++A R A D + VAG +PA +MG SGQ G P +ARAH Sbjct 326 CARLNELYAERLAAATAAD--ESVAGDGPGEAGRTSPAALMGASGQGGGTAGWPEIARAH 383 Query 338 HGSISKEQRAVVEEDLKRGQLKAVVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGR 397 HGS+S+EQRA +EEDLK G+L AVVATSSLELGIDMGAVDLV+Q+ +PPSVA+G+QR GR Sbjct 384 HGSVSREQRAGIEEDLKAGRLPAVVATSSLELGIDMGAVDLVVQIGSPPSVAAGMQRTGR 443 Query 398 AGHQVGEISRGVLFPKHRTDLLGCAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALE 457 AGHQVG SRGV+ PKHR+DLL CAV +RM +G IE +R P NPLD+LAQ VA A+E Sbjct 444 AGHQVGAASRGVIIPKHRSDLLECAVVAERMRSGAIERLRYPRNPLDVLAQQIVAMTAME 503 Query 458 PLDADAWFDTVRRAAPFATLPRSLFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTAR 517 D VRR A FATLP S FEA LD+L+G+YPS FAELRPR+ +DR TG LTAR Sbjct 504 DWHVDELGALVRRTATFATLPTSAFEAVLDMLAGRYPSDTFAELRPRITWDRVTGILTAR 563 Query 518 PGAQRLAVTSGGAIPDRGLFAVYLATERPSRVGELDEEMVYESRPGDVISLGATSWRITE 577 PGAQRLAVTSGG IPDRG+F V+L ER SRVGELDEEMVYESR GDV+ LG++SWRI E Sbjct 564 PGAQRLAVTSGGTIPDRGMFGVFLVGERSSRVGELDEEMVYESRVGDVVLLGSSSWRIEE 623 Query 578 ITHDRVLVIPAPGQPARLPFWRGDDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGF 637 IT DRVLV PAPG+P RLPFW GD GRPAELG ALGA E+ L A R G Sbjct 624 ITADRVLVTPAPGRPGRLPFWHGDAPGRPAELGRALGAFLREITRLPAQAAADRVRAAGL 683 Query 638 DDYATDNLWRLLDDQRTATAVVPTDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAV 697 DD AT NL R LD+Q+ A + D T++VERFRDE+GDWR+ +HSP+G V+ P ALA+ Sbjct 684 DDRATANLLRYLDEQKAAVGRLHDDRTIVVERFRDEIGDWRLAVHSPFGAPVNAPWALAL 743 Query 698 GRRLRDRYGIDEKPTASDNGIVVRLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGS 757 G RLR+RYG+D + +D+GIV R+PD PPGA+L +F+ DEID IV E+ S Sbjct 744 GARLRERYGVDVQIMHTDDGIVARIPDAA-----EPPGADLALFEPDEIDAIVRAEIGSS 798 Query 758 ALFASRFRESAARALLLPRRHPGRRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQ 817 ALFASRFRE A RALLLPRR PGRR+PLWQQRQR+A LL VA + FP+VLET+RECLQ Sbjct 799 ALFASRFRECAGRALLLPRRTPGRRTPLWQQRQRSAALLSVAATFASFPVVLETMRECLQ 858 Query 818 DVYDVPILVELMARIAQRRVRVAEAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAA 877 DV+DVP L ELM ++ R +RV E ET PSPFA++LLFGYV AFMY+GD PLAERRA Sbjct 859 DVFDVPALAELMREVSARTLRVVEVETPSPSPFASALLFGYVAAFMYDGDVPLAERRAQV 918 Query 878 LALDGTLLAELLGRVELRELLDPDVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTE 937 L+LD +LLAELLG +LREL+DP +A + QL LA DR ARD EGVADLLR+LG LT Sbjct 919 LSLDSSLLAELLGEADLRELIDPAALAQVAAQLTRLAPDRHARDVEGVADLLRMLGDLTT 978 Query 938 DEIAARAGAPEVSGWLDGLRAAKRALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPAS 997 +E AR P GWL L +RAL V AG WVA+ED GRLRD +G +PVG+P + Sbjct 979 EEAVARGATP---GWLAELEQTRRALRVRIAGEERWVAIEDAGRLRDALGVPLPVGVPDA 1035 Query 998 FTEAVADPLGELLGRYARTHTPFTTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAA 1057 FTE V DPLG+L+ RYARTH PF T AAR GLG V A VL L GRLVRGE Sbjct 1036 FTEPVRDPLGDLISRYARTHGPFDTEEPAARLGLGTAVVAGVLDGLVRSGRLVRGEL--- 1092 Query 1058 AKGSAGGEQWCDAEVLRILRRRSLAALRAQAEPVSTAAYGRFLPAWQHVSAGNS-GIDGL 1116 GGEQWCDA VLR LRRRSLAALR + E V G FLPAWQ V++G G+DG+ Sbjct 1093 -HPDRGGEQWCDAGVLRALRRRSLAALRKEVEAVPPRTLGAFLPAWQSVTSGRGRGVDGV 1151 Query 1117 AAVIDQLAGVRIPASAIEPLVLAPRIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIAL 1176 ++QL G IPASA E LVL R+ DYSP MLDEL ++G+V W+GAG + G DGW+ L Sbjct 1152 LRAVEQLQGALIPASAWEQLVLPARVADYSPTMLDELCSAGEVHWAGAGGLPGDDGWLTL 1211 Query 1177 HPADSA-PMTLAEPAEIDFTDAHRAILASLGTGGAYFFRQLTH--DGLTEAELKAALWEL 1233 AD+A + EI H AIL +L G A FFR L+ L + L ALW+L Sbjct 1212 VLADTAPLLLPPPDPEIASGPLHTAILDALTGGAALFFRALSDRMGSLDDTALATALWDL 1271 Query 1234 IWAGRVTGDTFAPVRAVLGGAGTRKRAAPAHGGHRPPRLSRYRLTHAQARNADPTVAGRW 1293 +WAGRVT DT AP+RA+LG AG RA PR +RY R PT AGRW Sbjct 1272 VWAGRVTNDTLAPLRALLGSAGRPYRAP-------RPRAARYGRPAMPRRAGPPTAAGRW 1324 Query 1294 SALPLPEPDSTLRAHYQAELLLNRHGVLTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQR 1353 S LP + D T RAH AE LL RHG++T+ AV E GGFA +Y+VLSAFEDAGR +R Sbjct 1325 SLLPERDTDPTRRAHALAEALLERHGIVTRGAVTGERHPGGFAGVYRVLSAFEDAGRARR 1384 Query 1354 GYFIESLGGAQFAVASTVDRLRSY---------------LDGVDPEQPDYHAVVLAAADP 1398 GYF+ESLG AQFAV VDRLRS P AVVLAAADP Sbjct 1385 GYFVESLGAAQFAVPGAVDRLRSIAAAQRDAEAAPAWAQPAAGPPSSSSAQAVVLAAADP 1444 Query 1399 ANPYGAALPW---PASSADGTA--RPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPE 1453 ANP+GAALPW P ADG A RPGRKAGA+VV++DGEL ++ERGGRSLL++T+D Sbjct 1445 ANPFGAALPWPTRPGDDADGAAGHRPGRKAGAMVVIIDGELILYVERGGRSLLSWTEDDH 1504 Query 1454 ANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLAAGFVRTPRGLRRR 1513 A LA V G + + VE+ADG ++ S AL AGF TPRGLR R Sbjct 1505 RVAPAVEALARAVRDGLLGRLTVEKADGQTIV-----GSTLGAALERAGFHPTPRGLRLR 1559 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 3930051478240 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40