BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3315c Length=133 Score E Sequences producing significant alignments: (Bits) Value gi|289555594|ref|ZP_06444804.1| cytidine deaminase cdd [Mycobact... 266 5e-70 gi|253800360|ref|YP_003033361.1| cytidine deaminase cdd [Mycobac... 266 6e-70 gi|15610451|ref|NP_217832.1| cytidine deaminase [Mycobacterium t... 266 7e-70 gi|308232413|ref|ZP_07415983.2| cytidine deaminase cdd [Mycobact... 249 7e-65 gi|342861542|ref|ZP_08718189.1| cytidine deaminase [Mycobacteriu... 221 3e-56 gi|254820239|ref|ZP_05225240.1| cytidine deaminase [Mycobacteriu... 216 8e-55 gi|296168862|ref|ZP_06850534.1| cytidine deaminase [Mycobacteriu... 213 1e-53 gi|118466769|ref|YP_883434.1| cytidine deaminase [Mycobacterium ... 209 1e-52 gi|41409538|ref|NP_962374.1| cytidine deaminase [Mycobacterium a... 207 5e-52 gi|183981226|ref|YP_001849517.1| cytidine deaminase Cdd [Mycobac... 204 2e-51 gi|118617051|ref|YP_905383.1| cytidine deaminase [Mycobacterium ... 204 3e-51 gi|120402596|ref|YP_952425.1| cytidine deaminase [Mycobacterium ... 195 2e-48 gi|240169118|ref|ZP_04747777.1| cytidine deaminase [Mycobacteriu... 194 4e-48 gi|108798202|ref|YP_638399.1| cytidine deaminase [Mycobacterium ... 189 1e-46 gi|126433859|ref|YP_001069550.1| cytidine deaminase [Mycobacteri... 189 1e-46 gi|119867298|ref|YP_937250.1| cytidine deaminase [Mycobacterium ... 188 2e-46 gi|296278582|pdb|3MPZ|A Chain A, Crystal Structure Of Cytidine D... 186 1e-45 gi|296268667|ref|YP_003651299.1| cytidine deaminase [Thermobispo... 186 1e-45 gi|169630751|ref|YP_001704400.1| cytidine deaminase Cdd [Mycobac... 186 1e-45 gi|145225421|ref|YP_001136099.1| cytidine deaminase [Mycobacteri... 184 3e-45 gi|315445769|ref|YP_004078648.1| cytidine deaminase [Mycobacteri... 184 4e-45 gi|118472624|ref|YP_886049.1| cytidine deaminase [Mycobacterium ... 183 7e-45 gi|296138697|ref|YP_003645940.1| cytidine deaminase [Tsukamurell... 177 4e-43 gi|336321614|ref|YP_004601582.1| cytidine deaminase [Cellvibrio ... 176 1e-42 gi|333991782|ref|YP_004524396.1| cytidine deaminase Cdd [Mycobac... 174 3e-42 gi|332671362|ref|YP_004454370.1| cytidine deaminase [Cellulomona... 172 2e-41 gi|229489453|ref|ZP_04383316.1| cytidine deaminase [Rhodococcus ... 169 2e-40 gi|256389998|ref|YP_003111562.1| cytidine deaminase [Catenulispo... 168 3e-40 gi|226305533|ref|YP_002765493.1| cytidine deaminase [Rhodococcus... 167 4e-40 gi|297158061|gb|ADI07773.1| cytidine deaminase [Streptomyces bin... 167 4e-40 gi|296128879|ref|YP_003636129.1| cytidine deaminase [Cellulomona... 166 8e-40 gi|159036412|ref|YP_001535665.1| cytidine deaminase [Salinispora... 166 1e-39 gi|262201722|ref|YP_003272930.1| cytidine deaminase [Gordonia br... 166 1e-39 gi|271962818|ref|YP_003337014.1| cytidine deaminase [Streptospor... 165 2e-39 gi|111023212|ref|YP_706184.1| cytidine deaminase [Rhodococcus jo... 165 2e-39 gi|226365717|ref|YP_002783500.1| cytidine deaminase [Rhodococcus... 164 4e-39 gi|330465700|ref|YP_004403443.1| cytidine deaminase [Verrucosisp... 164 5e-39 gi|145593369|ref|YP_001157666.1| cytidine deaminase [Salinispora... 164 6e-39 gi|254385189|ref|ZP_05000521.1| cytidine deaminase [Streptomyces... 163 7e-39 gi|302865281|ref|YP_003833918.1| CMP/dCMP deaminase [Micromonosp... 163 7e-39 gi|258651552|ref|YP_003200708.1| cytidine deaminase [Nakamurella... 163 8e-39 gi|284029321|ref|YP_003379252.1| cytidine deaminase [Kribbella f... 163 8e-39 gi|315501825|ref|YP_004080712.1| cmp/dcmp deaminase zinc-binding... 163 8e-39 gi|337767770|emb|CCB76481.1| Deaminase; putative Adenyl acid dea... 162 2e-38 gi|238062607|ref|ZP_04607316.1| cytidine deaminase [Micromonospo... 161 3e-38 gi|296394552|ref|YP_003659436.1| CMP/dCMP deaminase zinc-binding... 160 5e-38 gi|295395203|ref|ZP_06805411.1| cytidine deaminase [Brevibacteri... 160 6e-38 gi|54022917|ref|YP_117159.1| cytidine deaminase [Nocardia farcin... 160 8e-38 gi|88856460|ref|ZP_01131118.1| cytidine deaminase [marine actino... 159 9e-38 gi|343926657|ref|ZP_08766155.1| cytidine deaminase [Gordonia alk... 159 1e-37 >gi|289555594|ref|ZP_06444804.1| cytidine deaminase cdd [Mycobacterium tuberculosis KZN 605] gi|289440226|gb|EFD22719.1| cytidine deaminase cdd [Mycobacterium tuberculosis KZN 605] Length=168 Score = 266 bits (681), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA Sbjct 36 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 95 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP Sbjct 96 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 155 Query 121 DAFGLDDLPRERR 133 DAFGLDDLPRERR Sbjct 156 DAFGLDDLPRERR 168 >gi|253800360|ref|YP_003033361.1| cytidine deaminase cdd [Mycobacterium tuberculosis KZN 1435] gi|289747134|ref|ZP_06506512.1| cytidine deaminase [Mycobacterium tuberculosis 02_1987] gi|298526792|ref|ZP_07014201.1| cytidine deaminase [Mycobacterium tuberculosis 94_M4241A] gi|253321863|gb|ACT26466.1| cytidine deaminase cdd [Mycobacterium tuberculosis KZN 1435] gi|289687662|gb|EFD55150.1| cytidine deaminase [Mycobacterium tuberculosis 02_1987] gi|298496586|gb|EFI31880.1| cytidine deaminase [Mycobacterium tuberculosis 94_M4241A] gi|328460093|gb|AEB05516.1| cytidine deaminase cdd [Mycobacterium tuberculosis KZN 4207] Length=162 Score = 266 bits (681), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA Sbjct 30 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 89 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP Sbjct 90 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 149 Query 121 DAFGLDDLPRERR 133 DAFGLDDLPRERR Sbjct 150 DAFGLDDLPRERR 162 >gi|15610451|ref|NP_217832.1| cytidine deaminase [Mycobacterium tuberculosis H37Rv] gi|15842907|ref|NP_337944.1| cytidine deaminase [Mycobacterium tuberculosis CDC1551] gi|31794496|ref|NP_856989.1| cytidine deaminase [Mycobacterium bovis AF2122/97] 55 more sequence titles Length=133 Score = 266 bits (680), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA Sbjct 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP Sbjct 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 Query 121 DAFGLDDLPRERR 133 DAFGLDDLPRERR Sbjct 121 DAFGLDDLPRERR 133 >gi|308232413|ref|ZP_07415983.2| cytidine deaminase cdd [Mycobacterium tuberculosis SUMu001] gi|308370223|ref|ZP_07420705.2| cytidine deaminase cdd [Mycobacterium tuberculosis SUMu002] gi|308371307|ref|ZP_07424512.2| cytidine deaminase cdd [Mycobacterium tuberculosis SUMu003] 19 more sequence titles Length=126 Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 126/126 (100%), Positives = 126/126 (100%), Gaps = 0/126 (0%) Query 8 MLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHS 67 MLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHS Sbjct 1 MLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHS 60 Query 68 TGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGLDD 127 TGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGLDD Sbjct 61 TGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGLDD 120 Query 128 LPRERR 133 LPRERR Sbjct 121 LPRERR 126 >gi|342861542|ref|ZP_08718189.1| cytidine deaminase [Mycobacterium colombiense CECT 3035] gi|342131031|gb|EGT84320.1| cytidine deaminase [Mycobacterium colombiense CECT 3035] Length=133 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 110/132 (84%), Positives = 116/132 (88%), Gaps = 0/132 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MP++DWNMLR A + GAY PYSRF VGAAALVDDGRVVTGCNVEN+SYGL LCAECA Sbjct 1 MPEIDWNMLRDKAIDVSTGAYAPYSRFRVGAAALVDDGRVVTGCNVENISYGLGLCAECA 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VVCALHSTGGGRL+ALACVDG GSVLMPCGRCRQVLLEHGG+ELLIDHP PRRLGDLLP Sbjct 61 VVCALHSTGGGRLVALACVDGRGSVLMPCGRCRQVLLEHGGAELLIDHPGGPRRLGDLLP 120 Query 121 DAFGLDDLPRER 132 DAFG DDL R Sbjct 121 DAFGPDDLTAGR 132 >gi|254820239|ref|ZP_05225240.1| cytidine deaminase [Mycobacterium intracellulare ATCC 13950] Length=133 Score = 216 bits (551), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 108/133 (82%), Positives = 114/133 (86%), Gaps = 0/133 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MP++DW LR A Q + GAY PYSRFAVGAAALVDD RVVTGCNVEN+SYGL LCAECA Sbjct 1 MPEIDWKRLRDKAIQVSEGAYAPYSRFAVGAAALVDDHRVVTGCNVENISYGLGLCAECA 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VVCALHSTGGGRL+ALACVD GSVLMPCGRCRQVLLEHGG ELLIDHP PRRLGDLLP Sbjct 61 VVCALHSTGGGRLIALACVDQRGSVLMPCGRCRQVLLEHGGPELLIDHPRGPRRLGDLLP 120 Query 121 DAFGLDDLPRERR 133 DAFG DD+ RR Sbjct 121 DAFGPDDVAAGRR 133 >gi|296168862|ref|ZP_06850534.1| cytidine deaminase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896479|gb|EFG76129.1| cytidine deaminase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=134 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 106/133 (80%), Positives = 114/133 (86%), Gaps = 1/133 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MPDVDWN LR A AA+GAY PYSRF VGAAALVDDGRVVTGCNVEN+SYGL LCAEC Sbjct 3 MPDVDWNTLRHKAIGAASGAYAPYSRFPVGAAALVDDGRVVTGCNVENISYGLGLCAECG 62 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VVCALH++GGGRL+AL CVDG G+ LMPCGRCRQ+LLEHGG ELLIDHP PRRLG+LLP Sbjct 63 VVCALHTSGGGRLIALTCVDGQGAPLMPCGRCRQLLLEHGGPELLIDHPAGPRRLGELLP 122 Query 121 DAFGLDDLPRERR 133 DAF DLPRE R Sbjct 123 DAF-WADLPREPR 134 >gi|118466769|ref|YP_883434.1| cytidine deaminase [Mycobacterium avium 104] gi|118168056|gb|ABK68953.1| cytidine deaminase [Mycobacterium avium 104] Length=133 Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 104/132 (79%), Positives = 112/132 (85%), Gaps = 0/132 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MPD+DWN LR A A+AGAY PYSRF VGAA LVDDGRVVTGCNVEN+SYGL LCAECA Sbjct 1 MPDIDWNALRDKAIDASAGAYAPYSRFRVGAAGLVDDGRVVTGCNVENISYGLGLCAECA 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VVCAL+++GGGRL+ALACVDG GSVL PCGRCRQVL EHGG ELLIDHP PRRLG+LLP Sbjct 61 VVCALYASGGGRLVALACVDGRGSVLTPCGRCRQVLAEHGGPELLIDHPGGPRRLGELLP 120 Query 121 DAFGLDDLPRER 132 DAFG D L R Sbjct 121 DAFGPDQLAAGR 132 >gi|41409538|ref|NP_962374.1| cytidine deaminase [Mycobacterium avium subsp. paratuberculosis K-10] gi|254776729|ref|ZP_05218245.1| cytidine deaminase [Mycobacterium avium subsp. avium ATCC 25291] gi|41398369|gb|AAS05990.1| Cdd [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459594|gb|EGO38529.1| cytidine deaminase [Mycobacterium avium subsp. paratuberculosis S397] Length=133 Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 103/132 (79%), Positives = 111/132 (85%), Gaps = 0/132 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MPD+DWN LR A +AGAY PYSRF VGAA LVDDGRVVTGCNVEN+SYGL LCAECA Sbjct 1 MPDIDWNALRDKAIDVSAGAYAPYSRFRVGAAGLVDDGRVVTGCNVENISYGLGLCAECA 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VVCAL+++GGGRL+ALACVDG GSVL PCGRCRQVL EHGG ELLIDHP PRRLG+LLP Sbjct 61 VVCALYASGGGRLVALACVDGRGSVLTPCGRCRQVLAEHGGPELLIDHPGGPRRLGELLP 120 Query 121 DAFGLDDLPRER 132 DAFG D L R Sbjct 121 DAFGPDQLAAGR 132 >gi|183981226|ref|YP_001849517.1| cytidine deaminase Cdd [Mycobacterium marinum M] gi|183174552|gb|ACC39662.1| cytidine deaminase Cdd [Mycobacterium marinum M] Length=132 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 100/126 (80%), Positives = 107/126 (85%), Gaps = 0/126 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MPD+DW LR ATQ AAGAY PYSRF VGAAALVDDGRVVTGCNVENVSYGL LCAEC Sbjct 1 MPDIDWKQLRDKATQVAAGAYAPYSRFPVGAAALVDDGRVVTGCNVENVSYGLALCAECG 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VVCALH+TGGGRL+ALACVDG G+ LMPCGRCRQ+L EHGG ELL+DH PRRLGDLLP Sbjct 61 VVCALHATGGGRLVALACVDGRGAPLMPCGRCRQLLFEHGGPELLVDHLAGPRRLGDLLP 120 Query 121 DAFGLD 126 + F D Sbjct 121 EPFHAD 126 >gi|118617051|ref|YP_905383.1| cytidine deaminase [Mycobacterium ulcerans Agy99] gi|118569161|gb|ABL03912.1| cytidine deaminase Cdd [Mycobacterium ulcerans Agy99] Length=132 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 100/126 (80%), Positives = 107/126 (85%), Gaps = 0/126 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MPD+DW LR ATQ AAGAY PYSRF VGAAALVDDGRVVTGCNVENVSYGL LCAEC Sbjct 1 MPDIDWKQLRDKATQVAAGAYAPYSRFPVGAAALVDDGRVVTGCNVENVSYGLALCAECG 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VVCALH+TGGGRL+ALACVDG G+ LMPCGRCRQ+L EHGG ELL+DH PRRLGDLLP Sbjct 61 VVCALHATGGGRLVALACVDGRGAPLMPCGRCRQLLFEHGGPELLVDHLAGPRRLGDLLP 120 Query 121 DAFGLD 126 + F D Sbjct 121 EPFHAD 126 >gi|120402596|ref|YP_952425.1| cytidine deaminase [Mycobacterium vanbaalenii PYR-1] gi|119955414|gb|ABM12419.1| cytidine deaminase [Mycobacterium vanbaalenii PYR-1] Length=140 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 97/130 (75%), Positives = 107/130 (83%), Gaps = 0/130 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DW MLR A A+ AY PYSRF VGAAALVDD R+V GCNVENVSYGL LCAECAVV Sbjct 4 EIDWKMLRRKAIDASVHAYAPYSRFRVGAAALVDDHRMVAGCNVENVSYGLGLCAECAVV 63 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 CALHS+GGGRLLAL+CV G VLMPCGRCRQ+LLEHGG E+LIDHP+ PR LG+LLPDA Sbjct 64 CALHSSGGGRLLALSCVGPDGEVLMPCGRCRQLLLEHGGPEMLIDHPLGPRPLGELLPDA 123 Query 123 FGLDDLPRER 132 FG DL R R Sbjct 124 FGPADLARNR 133 >gi|240169118|ref|ZP_04747777.1| cytidine deaminase [Mycobacterium kansasii ATCC 12478] Length=133 Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 97/119 (82%), Positives = 103/119 (87%), Gaps = 0/119 (0%) Query 8 MLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHS 67 MLR A Q +AGAY PYSRF VGAAALVDDGRVVTGCNVENVSYGL LCAEC VVCALH+ Sbjct 1 MLRDKAIQVSAGAYAPYSRFPVGAAALVDDGRVVTGCNVENVSYGLGLCAECGVVCALHA 60 Query 68 TGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGLD 126 TGGGRL+ALACVDG GS LMPCGRCRQ+LLEHGG ELLIDHP PRRLG+LLP+ F D Sbjct 61 TGGGRLVALACVDGAGSALMPCGRCRQLLLEHGGPELLIDHPAGPRRLGELLPEPFRAD 119 >gi|108798202|ref|YP_638399.1| cytidine deaminase [Mycobacterium sp. MCS] gi|108768621|gb|ABG07343.1| cytidine deaminase [Mycobacterium sp. MCS] Length=158 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 94/129 (73%), Positives = 105/129 (82%), Gaps = 0/129 (0%) Query 2 PDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAV 61 P++ W +LR A +A+ AY PYS F VGAAALVDD R+VTGCNVENVSYGL LCAEC+V Sbjct 23 PEIKWEVLRRKAIEASTLAYAPYSGFPVGAAALVDDDRIVTGCNVENVSYGLGLCAECSV 82 Query 62 VCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPD 121 VCALHS GGGRL+AL+CV VLMPCGRCRQVLLEHGG +LLIDHP PR LG+LLPD Sbjct 83 VCALHSGGGGRLVALSCVGPDSEVLMPCGRCRQVLLEHGGPDLLIDHPHGPRPLGELLPD 142 Query 122 AFGLDDLPR 130 AFG DDL R Sbjct 143 AFGPDDLAR 151 >gi|126433859|ref|YP_001069550.1| cytidine deaminase [Mycobacterium sp. JLS] gi|126233659|gb|ABN97059.1| cytidine deaminase [Mycobacterium sp. JLS] Length=138 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 94/129 (73%), Positives = 106/129 (83%), Gaps = 0/129 (0%) Query 2 PDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAV 61 P++ W +LR A +A++ AY PYS F VGAAALVDD R+VTGCNVENVSYGL LCAEC+V Sbjct 3 PEIKWEVLRRKAIEASSLAYAPYSGFPVGAAALVDDDRIVTGCNVENVSYGLGLCAECSV 62 Query 62 VCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPD 121 VCALHS GGGRL+AL+CV VLMPCGRCRQVLLEHGG +LLIDHP PR LG+LLPD Sbjct 63 VCALHSGGGGRLVALSCVGPDSEVLMPCGRCRQVLLEHGGPDLLIDHPHGPRPLGELLPD 122 Query 122 AFGLDDLPR 130 AFG DDL R Sbjct 123 AFGPDDLAR 131 >gi|119867298|ref|YP_937250.1| cytidine deaminase [Mycobacterium sp. KMS] gi|119693387|gb|ABL90460.1| cytidine deaminase [Mycobacterium sp. KMS] Length=138 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/129 (73%), Positives = 105/129 (82%), Gaps = 0/129 (0%) Query 2 PDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAV 61 P++ W +LR A +A+ AY PYS F VGAAALVDD R+VTGCNVENVSYGL LCAEC+V Sbjct 3 PEIKWEVLRRKAIEASTLAYAPYSGFPVGAAALVDDDRIVTGCNVENVSYGLGLCAECSV 62 Query 62 VCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPD 121 VCALHS GGGRL+AL+CV VLMPCGRCRQVLLEHGG +LLIDHP PR LG+LLPD Sbjct 63 VCALHSGGGGRLVALSCVGPDSEVLMPCGRCRQVLLEHGGPDLLIDHPHGPRPLGELLPD 122 Query 122 AFGLDDLPR 130 AFG DDL R Sbjct 123 AFGPDDLAR 131 >gi|296278582|pdb|3MPZ|A Chain A, Crystal Structure Of Cytidine Deaminase From Mycobacterium S gi|296278583|pdb|3MPZ|B Chain B, Crystal Structure Of Cytidine Deaminase From Mycobacterium S gi|296278584|pdb|3MPZ|C Chain C, Crystal Structure Of Cytidine Deaminase From Mycobacterium S gi|296278585|pdb|3MPZ|D Chain D, Crystal Structure Of Cytidine Deaminase From Mycobacterium S Length=150 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 96/127 (76%), Positives = 102/127 (81%), Gaps = 0/127 (0%) Query 4 VDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVC 63 V+WN LR A + + AY PYS F VGAAALVDDGR VTGCNVENVSYGL LCAECAVVC Sbjct 23 VNWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVC 82 Query 64 ALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAF 123 ALHS GGGRL+AL+CV G VLMPCGRCRQVLLEHGG ELLIDH PR L +LLPDAF Sbjct 83 ALHSGGGGRLVALSCVGPDGGVLMPCGRCRQVLLEHGGPELLIDHAHGPRPLRELLPDAF 142 Query 124 GLDDLPR 130 G DDL R Sbjct 143 GPDDLGR 149 >gi|296268667|ref|YP_003651299.1| cytidine deaminase [Thermobispora bispora DSM 43833] gi|296091454|gb|ADG87406.1| cytidine deaminase [Thermobispora bispora DSM 43833] Length=129 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 91/127 (72%), Positives = 102/127 (81%), Gaps = 0/127 (0%) Query 4 VDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVC 63 +DW LR A + A AY PYS+F VGAAALVDDGRVVTGCNVEN SYGL LCAEC +V Sbjct 3 IDWQRLRDAACEVMANAYAPYSKFPVGAAALVDDGRVVTGCNVENASYGLGLCAECGLVS 62 Query 64 ALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAF 123 ALH+TGGGRL+A CVDGHG +LMPCGRCRQ+LLEHGG +LLI+ P PRRL +LLP AF Sbjct 63 ALHATGGGRLVAFTCVDGHGELLMPCGRCRQLLLEHGGPDLLIETPEGPRRLAELLPYAF 122 Query 124 GLDDLPR 130 G DDL R Sbjct 123 GPDDLSR 129 >gi|169630751|ref|YP_001704400.1| cytidine deaminase Cdd [Mycobacterium abscessus ATCC 19977] gi|169242718|emb|CAM63746.1| Probable cytidine deaminase Cdd [Mycobacterium abscessus] Length=132 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 91/129 (71%), Positives = 103/129 (80%), Gaps = 0/129 (0%) Query 4 VDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVC 63 ++WN LR A AY PYS++ VGAAALVDDGRV++GCNVENVSYGL LCAEC+VVC Sbjct 3 IEWNELRDKAYAVTKHAYAPYSKYPVGAAALVDDGRVISGCNVENVSYGLGLCAECSVVC 62 Query 64 ALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAF 123 AL S+GGGRL+AL+CVD G LMPCGRCRQ+LLEHGG +LLIDH PRRL LLPDAF Sbjct 63 ALFSSGGGRLMALSCVDSRGEPLMPCGRCRQLLLEHGGPDLLIDHADGPRRLAQLLPDAF 122 Query 124 GLDDLPRER 132 G DDL R R Sbjct 123 GPDDLDRGR 131 >gi|145225421|ref|YP_001136099.1| cytidine deaminase [Mycobacterium gilvum PYR-GCK] gi|145217907|gb|ABP47311.1| cytidine deaminase [Mycobacterium gilvum PYR-GCK] Length=140 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 92/128 (72%), Positives = 103/128 (81%), Gaps = 0/128 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DWN+LR A + AY PYS F VGAAALVDD R+V GCNVENVSYGL LCAECAVV Sbjct 4 EIDWNLLRRKAIDVSQHAYAPYSGFRVGAAALVDDRRMVAGCNVENVSYGLGLCAECAVV 63 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 CALHS+GGGRL+AL CV G VLMPCGRCRQVL EHGG +LLIDHP+ P+ LG+LLPDA Sbjct 64 CALHSSGGGRLVALTCVGPDGEVLMPCGRCRQVLFEHGGGDLLIDHPLGPKPLGELLPDA 123 Query 123 FGLDDLPR 130 FG DL R Sbjct 124 FGPADLDR 131 >gi|315445769|ref|YP_004078648.1| cytidine deaminase [Mycobacterium sp. Spyr1] gi|315264072|gb|ADU00814.1| cytidine deaminase [Mycobacterium sp. Spyr1] Length=140 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 92/127 (73%), Positives = 102/127 (81%), Gaps = 0/127 (0%) Query 4 VDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVC 63 +DWN+LR A + AY PYS F VGAAALVDD R+V GCNVENVSYGL LCAECAVVC Sbjct 5 IDWNLLRRKAIDVSQHAYAPYSGFRVGAAALVDDHRMVAGCNVENVSYGLGLCAECAVVC 64 Query 64 ALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAF 123 ALHS+GGGRL+AL CV G VLMPCGRCRQVL EHGG +LLIDHP+ P+ LG+LLPDAF Sbjct 65 ALHSSGGGRLVALTCVGPDGEVLMPCGRCRQVLFEHGGGDLLIDHPLGPKPLGELLPDAF 124 Query 124 GLDDLPR 130 G DL R Sbjct 125 GPADLDR 131 >gi|118472624|ref|YP_886049.1| cytidine deaminase [Mycobacterium smegmatis str. MC2 155] gi|118173911|gb|ABK74807.1| cytidine deaminase [Mycobacterium smegmatis str. MC2 155] Length=128 Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 95/127 (75%), Positives = 102/127 (81%), Gaps = 0/127 (0%) Query 4 VDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVC 63 ++WN LR A + + AY PYS F VGAAALVDDGR VTGCNVENVSYGL LCAECAVVC Sbjct 1 MNWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVC 60 Query 64 ALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAF 123 ALHS GGGRL+AL+CV G VLMPCGRCRQVLLEHGG ELLIDH PR L +LLPDAF Sbjct 61 ALHSGGGGRLVALSCVGPDGGVLMPCGRCRQVLLEHGGPELLIDHAHGPRPLRELLPDAF 120 Query 124 GLDDLPR 130 G DDL R Sbjct 121 GPDDLGR 127 >gi|296138697|ref|YP_003645940.1| cytidine deaminase [Tsukamurella paurometabola DSM 20162] gi|296026831|gb|ADG77601.1| cytidine deaminase [Tsukamurella paurometabola DSM 20162] Length=132 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 84/128 (66%), Positives = 99/128 (78%), Gaps = 0/128 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MP++DW MLR A +A AY PYS + VGAAA+ DGRVV+GCNVENVSYGL LCAEC Sbjct 1 MPEIDWEMLRRTAVEAMGRAYAPYSEYPVGAAAITTDGRVVSGCNVENVSYGLGLCAECG 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 +V ALH++GGGRLLA +C + +G +LMPCGRCRQ+L EHGG ELL+DH P L LLP Sbjct 61 LVSALHNSGGGRLLAFSCTNANGDILMPCGRCRQLLYEHGGGELLVDHRSGPVPLSTLLP 120 Query 121 DAFGLDDL 128 DAFG DDL Sbjct 121 DAFGPDDL 128 >gi|336321614|ref|YP_004601582.1| cytidine deaminase [Cellvibrio gilvus ATCC 13127] gi|336105195|gb|AEI13014.1| cytidine deaminase [Cellvibrio gilvus ATCC 13127] Length=132 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 83/128 (65%), Positives = 104/128 (82%), Gaps = 0/128 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 M +VDW+ LR AT+A AYVPYS+F VGAAA+VDDGRVV+GCNVEN SYG+TLCAEC+ Sbjct 1 MTEVDWDALRTVATEAMRKAYVPYSKFPVGAAAIVDDGRVVSGCNVENASYGVTLCAECS 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 +V AL +GGGRL+A CVDGHG+VLMPCGRCRQ+L EHGG+ L+++ + + ++LP Sbjct 61 LVSALTMSGGGRLVAFTCVDGHGNVLMPCGRCRQLLWEHGGARLIVETVSGVKPMTEVLP 120 Query 121 DAFGLDDL 128 DAFG DDL Sbjct 121 DAFGPDDL 128 >gi|333991782|ref|YP_004524396.1| cytidine deaminase Cdd [Mycobacterium sp. JDM601] gi|333487750|gb|AEF37142.1| cytidine deaminase Cdd [Mycobacterium sp. JDM601] Length=135 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/123 (71%), Positives = 97/123 (79%), Gaps = 0/123 (0%) Query 4 VDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVC 63 VDW +LR NA AA AY PYS VGAAAL DGR+ TGCNVENVSYGL+LCAECAVV Sbjct 10 VDWEVLRRNAISVAANAYAPYSGLRVGAAALTADGRLFTGCNVENVSYGLSLCAECAVVA 69 Query 64 ALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAF 123 AL + GGGRL+AL+C G++LMPCGRCRQVLLEHGG ELL+DHP RRL +LLPDAF Sbjct 70 ALCTAGGGRLVALSCTGAAGNLLMPCGRCRQVLLEHGGPELLVDHPAGARRLSELLPDAF 129 Query 124 GLD 126 G D Sbjct 130 GPD 132 >gi|332671362|ref|YP_004454370.1| cytidine deaminase [Cellulomonas fimi ATCC 484] gi|332340400|gb|AEE46983.1| cytidine deaminase [Cellulomonas fimi ATCC 484] Length=131 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/126 (66%), Positives = 99/126 (79%), Gaps = 0/126 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DW+ LR AT+A AYVPYS+F VG AALVDDGRVV GCNVEN SYGLTLCAECA+V Sbjct 2 EIDWDALRAAATEAMHRAYVPYSKFPVGVAALVDDGRVVVGCNVENASYGLTLCAECALV 61 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 LH +GGGRL+A CVDGHG+VLMPCGRCRQ+L EHGG LL++ + + ++LPDA Sbjct 62 SGLHVSGGGRLVAFTCVDGHGNVLMPCGRCRQLLWEHGGPRLLVETVSGIKPMTEVLPDA 121 Query 123 FGLDDL 128 FG DL Sbjct 122 FGPQDL 127 >gi|229489453|ref|ZP_04383316.1| cytidine deaminase [Rhodococcus erythropolis SK121] gi|229323550|gb|EEN89308.1| cytidine deaminase [Rhodococcus erythropolis SK121] Length=134 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 82/124 (67%), Positives = 96/124 (78%), Gaps = 0/124 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 M D+DW +LR NA AY PYS +AVGAAALVDDGR+V+GCNVENVSYGL+LCAEC Sbjct 1 MGDIDWKLLRHNAQVVMRQAYAPYSGYAVGAAALVDDGRIVSGCNVENVSYGLSLCAECG 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 +V L +TGGGRLLA C D GS+LMPCGRCRQ+LLEHGG E+L+D + L +LLP Sbjct 61 LVGNLAATGGGRLLAFTCCDAKGSILMPCGRCRQLLLEHGGGEMLVDTSSGFKPLSELLP 120 Query 121 DAFG 124 DAFG Sbjct 121 DAFG 124 >gi|256389998|ref|YP_003111562.1| cytidine deaminase [Catenulispora acidiphila DSM 44928] gi|256356224|gb|ACU69721.1| cytidine deaminase [Catenulispora acidiphila DSM 44928] Length=137 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 84/130 (65%), Positives = 99/130 (77%), Gaps = 4/130 (3%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DW LR A +A A AYVPYS F VGAAALVDDGR+V+GCNVEN SYGLTLCAEC +V Sbjct 4 EIDWAALRTAAREAMAHAYVPYSTFPVGAAALVDDGRIVSGCNVENASYGLTLCAECGLV 63 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLI----DHPVRPRRLGDL 118 ALH++GGGRL+A ACVDG G+ LMPCGRCRQ+L E GG++LL+ D L DL Sbjct 64 SALHASGGGRLVAFACVDGEGAALMPCGRCRQLLFEFGGTDLLVDLGPDSEPSATSLSDL 123 Query 119 LPDAFGLDDL 128 LP AFG D+L Sbjct 124 LPRAFGPDNL 133 >gi|226305533|ref|YP_002765493.1| cytidine deaminase [Rhodococcus erythropolis PR4] gi|226184650|dbj|BAH32754.1| probable cytidine deaminase [Rhodococcus erythropolis PR4] Length=134 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 81/124 (66%), Positives = 96/124 (78%), Gaps = 0/124 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 M D+DW +LR NA AY PYS +AVGAAALVDDGR+V+GCNVENVSYGL+LCAEC Sbjct 1 MGDIDWKLLRHNAQVVMRQAYAPYSGYAVGAAALVDDGRIVSGCNVENVSYGLSLCAECG 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 +V L +TGGGRL+A C D GS+LMPCGRCRQ+LLEHGG E+L+D + L +LLP Sbjct 61 LVGNLAATGGGRLVAFTCCDAKGSILMPCGRCRQLLLEHGGGEMLVDTSSGFKPLSELLP 120 Query 121 DAFG 124 DAFG Sbjct 121 DAFG 124 >gi|297158061|gb|ADI07773.1| cytidine deaminase [Streptomyces bingchenggensis BCW-1] Length=139 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 82/127 (65%), Positives = 94/127 (75%), Gaps = 0/127 (0%) Query 4 VDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVC 63 VDW LR A + AY PYSR+ VGAAALVDDGR VTGCNVEN +YG+ LCAEC +V Sbjct 13 VDWEALRAQARGVMSRAYAPYSRYPVGAAALVDDGRTVTGCNVENAAYGVALCAECGLVS 72 Query 64 ALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAF 123 AL ++GGGRL A C DGHG+VLMPCGRCRQ+L EHGG EL +D R L +LLPDAF Sbjct 73 ALFASGGGRLTAFTCCDGHGAVLMPCGRCRQLLWEHGGPELQVDTASGIRPLAELLPDAF 132 Query 124 GLDDLPR 130 G +DL R Sbjct 133 GRNDLER 139 >gi|296128879|ref|YP_003636129.1| cytidine deaminase [Cellulomonas flavigena DSM 20109] gi|296020694|gb|ADG73930.1| cytidine deaminase [Cellulomonas flavigena DSM 20109] Length=145 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 82/127 (65%), Positives = 92/127 (73%), Gaps = 0/127 (0%) Query 2 PDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAV 61 P VDW LR A AY PYSRF VG AALVDDGRVV GCNVEN SYG+ LCAEC++ Sbjct 7 PTVDWEALRAAARDVMTRAYAPYSRFPVGVAALVDDGRVVVGCNVENASYGVGLCAECSL 66 Query 62 VCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPD 121 V LH TGGGRL+A CVDGHG VLMPCGRCRQ+L EHGG LL++ R + ++LPD Sbjct 67 VSMLHVTGGGRLVAFTCVDGHGDVLMPCGRCRQLLFEHGGPTLLVETVSGIRPMSEVLPD 126 Query 122 AFGLDDL 128 AFG DL Sbjct 127 AFGPVDL 133 >gi|159036412|ref|YP_001535665.1| cytidine deaminase [Salinispora arenicola CNS-205] gi|157915247|gb|ABV96674.1| cytidine deaminase [Salinispora arenicola CNS-205] Length=234 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 80/126 (64%), Positives = 95/126 (76%), Gaps = 0/126 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DW LR AT+ AYVPYS+F VGAAALVDDGR+V GCNVEN SYG+ LCAEC VV Sbjct 2 EIDWGRLRAAATEVMRHAYVPYSKFPVGAAALVDDGRIVVGCNVENASYGVVLCAECGVV 61 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 +LHSTGGGR++AL+CVD G LMPCGRCRQ+L E GG E LI+ P R+ +LLP A Sbjct 62 SSLHSTGGGRIVALSCVDATGEPLMPCGRCRQLLWEQGGPECLIEAKGGPMRMAELLPHA 121 Query 123 FGLDDL 128 F + DL Sbjct 122 FDVADL 127 >gi|262201722|ref|YP_003272930.1| cytidine deaminase [Gordonia bronchialis DSM 43247] gi|262085069|gb|ACY21037.1| cytidine deaminase [Gordonia bronchialis DSM 43247] Length=133 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/130 (64%), Positives = 95/130 (74%), Gaps = 0/130 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DWN+LR NA + AY PYSRF VGAAA+ DDGR V GCNVENVSYGL +CAE A+V Sbjct 4 EIDWNVLRHNANKMIERAYAPYSRFPVGAAAITDDGRYVVGCNVENVSYGLGICAEVALV 63 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 L + G RL+A++ D GSVLMPCGRCRQVL EHGG ELL+DH PR L LLPDA Sbjct 64 AQLVTGGSSRLVAVSVCDSRGSVLMPCGRCRQVLYEHGGGELLVDHRDGPRTLAALLPDA 123 Query 123 FGLDDLPRER 132 FG DDL R Sbjct 124 FGPDDLESVR 133 >gi|271962818|ref|YP_003337014.1| cytidine deaminase [Streptosporangium roseum DSM 43021] gi|270505993|gb|ACZ84271.1| cytidine deaminase [Streptosporangium roseum DSM 43021] Length=131 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 77/128 (61%), Positives = 98/128 (77%), Gaps = 0/128 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DW L+ A +A A AY PYS+F VGAAALVDDGR+V+GCNVEN SYG+ LCAEC +V Sbjct 2 NIDWAALKAEAVRAMANAYAPYSKFPVGAAALVDDGRIVSGCNVENASYGVGLCAECGLV 61 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 AL +TGGGRL+A CVDGH +LMPCGRCRQ+L E GG+ LL++ P+ + ++LP A Sbjct 62 SALQATGGGRLVAFTCVDGHEELLMPCGRCRQLLYEFGGAGLLVETVDGPKPMAEILPYA 121 Query 123 FGLDDLPR 130 FG +DL R Sbjct 122 FGPEDLSR 129 >gi|111023212|ref|YP_706184.1| cytidine deaminase [Rhodococcus jostii RHA1] gi|110822742|gb|ABG98026.1| probable cytidine deaminase [Rhodococcus jostii RHA1] Length=134 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/130 (63%), Positives = 94/130 (73%), Gaps = 0/130 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 M ++DW +LR NA + AY PYS FAVGAAALVDDGR+V GCNVENVSYGL LCAEC Sbjct 1 MVEIDWKLLRANAREVMGQAYAPYSGFAVGAAALVDDGRIVVGCNVENVSYGLGLCAECV 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 +V L + GGGRL+A C D G +LMPCGRCRQ+L EHGG LL+DH R L LLP Sbjct 61 LVGNLFAGGGGRLIAFTCCDASGDILMPCGRCRQILFEHGGPGLLVDHRAGVRPLEQLLP 120 Query 121 DAFGLDDLPR 130 DAFG ++ R Sbjct 121 DAFGPEEKGR 130 >gi|226365717|ref|YP_002783500.1| cytidine deaminase [Rhodococcus opacus B4] gi|226244207|dbj|BAH54555.1| cytidine deaminase [Rhodococcus opacus B4] Length=134 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/130 (62%), Positives = 95/130 (74%), Gaps = 0/130 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 M ++DW +LR NA + AY PYS FAVG+AALVDDGR+V GCNVENVSYGL LCAEC Sbjct 1 MVEIDWKLLRTNAHEVMGRAYAPYSGFAVGSAALVDDGRIVVGCNVENVSYGLGLCAECV 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 +V L ++GGGRL+A C D G +LMPCGRCRQ+L EHGG LL+DH R L LLP Sbjct 61 LVGNLFASGGGRLIAFTCCDASGDILMPCGRCRQILFEHGGPGLLVDHRAGVRPLEQLLP 120 Query 121 DAFGLDDLPR 130 DAFG ++ R Sbjct 121 DAFGPEEKGR 130 >gi|330465700|ref|YP_004403443.1| cytidine deaminase [Verrucosispora maris AB-18-032] gi|328808671|gb|AEB42843.1| cytidine deaminase [Verrucosispora maris AB-18-032] Length=233 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 79/126 (63%), Positives = 95/126 (76%), Gaps = 0/126 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DW LR AT+ AYVPYS+F VGAAALVDDGRVV GCNVEN +YG+ LCAEC VV Sbjct 2 EIDWGRLRAAATEVMRHAYVPYSKFPVGAAALVDDGRVVVGCNVENAAYGVVLCAECGVV 61 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 +LH+TGGGR++AL+CVD G LMPCGRCRQ+L E GG E LI+ P R+ +LLP A Sbjct 62 SSLHATGGGRIVALSCVDATGEPLMPCGRCRQLLWEQGGPECLIEAKGGPLRMAELLPHA 121 Query 123 FGLDDL 128 F + DL Sbjct 122 FDVADL 127 >gi|145593369|ref|YP_001157666.1| cytidine deaminase [Salinispora tropica CNB-440] gi|145302706|gb|ABP53288.1| cytidine deaminase [Salinispora tropica CNB-440] Length=234 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 79/126 (63%), Positives = 94/126 (75%), Gaps = 0/126 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DW LR AT+ AYVPYS+F VGAAALVDDGRVV GCNVEN SYG+ LCAEC V+ Sbjct 2 EIDWERLRAAATEVMRHAYVPYSKFPVGAAALVDDGRVVVGCNVENASYGMVLCAECGVI 61 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 AL +TGGGR++AL+CVD G LMPCGRCRQ+L EHGG E LI+ R+ +LLP A Sbjct 62 SALQATGGGRIVALSCVDATGEPLMPCGRCRQLLWEHGGPECLIEAKGGALRMAELLPHA 121 Query 123 FGLDDL 128 F + DL Sbjct 122 FDVTDL 127 >gi|254385189|ref|ZP_05000521.1| cytidine deaminase [Streptomyces sp. Mg1] gi|194344066|gb|EDX25032.1| cytidine deaminase [Streptomyces sp. Mg1] Length=132 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 81/127 (64%), Positives = 93/127 (74%), Gaps = 0/127 (0%) Query 2 PDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAV 61 P VDW +LR A A + AY PYS FAVG AALVDDGRVVTGCNVEN SYGL+LCAEC + Sbjct 5 PAVDWEVLRAAARDAMSRAYAPYSGFAVGVAALVDDGRVVTGCNVENASYGLSLCAECGL 64 Query 62 VCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPD 121 V +L +TGGGRL CVDG G L+PCGRCRQ+L E GG+ELL+D P L ++LP Sbjct 65 VSSLQATGGGRLTHFTCVDGKGESLVPCGRCRQLLFEFGGAELLVDTPKGILPLAEMLPQ 124 Query 122 AFGLDDL 128 AFG D L Sbjct 125 AFGPDHL 131 >gi|302865281|ref|YP_003833918.1| CMP/dCMP deaminase [Micromonospora aurantiaca ATCC 27029] gi|302568140|gb|ADL44342.1| CMP/dCMP deaminase zinc-binding [Micromonospora aurantiaca ATCC 27029] Length=233 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 78/126 (62%), Positives = 94/126 (75%), Gaps = 0/126 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DW LR AT+ AYVPYS+F VGAAALVDDGRVV GCNVEN YG+TLCAEC VV Sbjct 2 EIDWERLRTAATEVMRHAYVPYSKFPVGAAALVDDGRVVVGCNVENAGYGVTLCAECGVV 61 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 LH+TGGGR++AL+CVD G LMPCGRCRQ+L E GG E L++ P R+ +LLP A Sbjct 62 SQLHATGGGRIVALSCVDATGEPLMPCGRCRQLLWEQGGPECLVEAKGGPLRMAELLPHA 121 Query 123 FGLDDL 128 F + D+ Sbjct 122 FDVADI 127 >gi|258651552|ref|YP_003200708.1| cytidine deaminase [Nakamurella multipartita DSM 44233] gi|258554777|gb|ACV77719.1| cytidine deaminase [Nakamurella multipartita DSM 44233] Length=145 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 81/130 (63%), Positives = 94/130 (73%), Gaps = 0/130 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 VDW +LR A +AA AY PYS VGAAALVDDGR++TGCNVEN SYGL LCAEC +V Sbjct 5 SVDWPLLRQAAVEAAQSAYCPYSGLQVGAAALVDDGRIITGCNVENASYGLGLCAECTLV 64 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 L +GGGRL+ALAC G G +LMPCGRCRQV+ E GG EL +D P PR + +LPDA Sbjct 65 GQLRLSGGGRLVALACRSGEGELLMPCGRCRQVIYEFGGPELEVDGPSGPRPMTAVLPDA 124 Query 123 FGLDDLPRER 132 FG + LP R Sbjct 125 FGPEHLPAAR 134 >gi|284029321|ref|YP_003379252.1| cytidine deaminase [Kribbella flavida DSM 17836] gi|283808614|gb|ADB30453.1| cytidine deaminase [Kribbella flavida DSM 17836] Length=129 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 80/126 (64%), Positives = 96/126 (77%), Gaps = 0/126 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 +VDW +LR A +A AY PYS F VGAAALVDDGR+V GCNVEN SYGLTLCAEC +V Sbjct 2 NVDWGVLRTAAVEAMRRAYAPYSGFPVGAAALVDDGRIVAGCNVENASYGLTLCAECGLV 61 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 ALH++GGGRL+A CVD + +L PCGRCRQ+L EHGG ELLI+ P R L +LLP+A Sbjct 62 SALHASGGGRLVAFTCVDHNEELLTPCGRCRQLLHEHGGPELLIESPTGSRPLRELLPEA 121 Query 123 FGLDDL 128 FG + + Sbjct 122 FGPEHM 127 >gi|315501825|ref|YP_004080712.1| cmp/dcmp deaminase zinc-binding protein [Micromonospora sp. L5] gi|315408444|gb|ADU06561.1| CMP/dCMP deaminase zinc-binding protein [Micromonospora sp. L5] Length=233 Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 78/126 (62%), Positives = 94/126 (75%), Gaps = 0/126 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++DW LR AT+ AYVPYS+F VGAAALVDDGRVV GCNVEN YG+TLCAEC VV Sbjct 2 EIDWERLRTAATEVMRHAYVPYSKFPVGAAALVDDGRVVVGCNVENAGYGVTLCAECGVV 61 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 LH+TGGGR++AL+CVD G LMPCGRCRQ+L E GG E L++ P R+ +LLP A Sbjct 62 SQLHATGGGRIVALSCVDATGEPLMPCGRCRQLLWEQGGPECLVEAKGGPLRMAELLPHA 121 Query 123 FGLDDL 128 F + D+ Sbjct 122 FDVADI 127 >gi|337767770|emb|CCB76481.1| Deaminase; putative Adenyl acid deaminase [Streptomyces cattleya NRRL 8057] Length=130 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/130 (64%), Positives = 93/130 (72%), Gaps = 0/130 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 M DVDW LR A A AY PYS F VGAAAL DDGR V GCNVEN +YG+ LCAEC Sbjct 1 MTDVDWPALRRAARDAMTRAYAPYSGFPVGAAALADDGRTVVGCNVENAAYGVALCAECG 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 +V ALH++GGGRL A C D G+VLMPCGRCRQ+L EHGG ELL+D R + +LLP Sbjct 61 LVSALHASGGGRLTAFTCCDRTGAVLMPCGRCRQLLWEHGGPELLVDTASGIRPMRELLP 120 Query 121 DAFGLDDLPR 130 DAFG +DL R Sbjct 121 DAFGAEDLNR 130 >gi|238062607|ref|ZP_04607316.1| cytidine deaminase [Micromonospora sp. ATCC 39149] gi|237884418|gb|EEP73246.1| cytidine deaminase [Micromonospora sp. ATCC 39149] Length=236 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 77/128 (61%), Positives = 94/128 (74%), Gaps = 0/128 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 M ++DW LR AT+ AYVPYS+F VGAAALVDDGR+V GCNVEN +YG+ LCAEC Sbjct 1 MTEIDWERLRAAATEVMRHAYVPYSKFPVGAAALVDDGRIVVGCNVENAAYGVVLCAECG 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 VV +LH+TGGGR++AL+CVD G LMPCGRCRQ+L E GG LI+ P + +LLP Sbjct 61 VVSSLHATGGGRIVALSCVDATGEPLMPCGRCRQLLWEQGGPTCLIEAKGGPLTMAELLP 120 Query 121 DAFGLDDL 128 AF + DL Sbjct 121 HAFDVADL 128 >gi|296394552|ref|YP_003659436.1| CMP/dCMP deaminase zinc-binding protein [Segniliparus rotundus DSM 44985] gi|296181699|gb|ADG98605.1| CMP/dCMP deaminase zinc-binding protein [Segniliparus rotundus DSM 44985] Length=135 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 82/129 (64%), Positives = 94/129 (73%), Gaps = 1/129 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 M +++W +LR A A AY PYS F VGAA LVDDGRVV GCNVENVS GLTLCAEC Sbjct 1 MQEINWEILREKAKDAMRHAYAPYSLFPVGAAGLVDDGRVVAGCNVENVSLGLTLCAECG 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 +V AL +GGGRLLA+AC D G LMPCGRCRQ+L EHGG ++L+DH P LG+LLP Sbjct 61 LVGALSLSGGGRLLAMACCDAQGQPLMPCGRCRQLLYEHGGPQMLVDHAQGPVPLGELLP 120 Query 121 DAFGLDDLP 129 AF DLP Sbjct 121 RAFE-SDLP 128 >gi|295395203|ref|ZP_06805411.1| cytidine deaminase [Brevibacterium mcbrellneri ATCC 49030] gi|294971965|gb|EFG47832.1| cytidine deaminase [Brevibacterium mcbrellneri ATCC 49030] Length=127 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 77/125 (62%), Positives = 93/125 (75%), Gaps = 0/125 (0%) Query 4 VDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVC 63 +DW++LR A AYVPYS++ VG AALVDDGR++ GCNVEN SYGL LCAEC +V Sbjct 1 MDWDVLRERARAVMENAYVPYSKYPVGVAALVDDGRIIVGCNVENASYGLGLCAECGLVS 60 Query 64 ALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAF 123 LH TGGGRL+A ACVD HG+ L+PCGRCRQ+L EHGG +LL+D P L +LP+AF Sbjct 61 ELHRTGGGRLVAFACVDKHGNKLVPCGRCRQLLYEHGGPDLLLDMPSGIASLSQVLPEAF 120 Query 124 GLDDL 128 G D L Sbjct 121 GPDHL 125 >gi|54022917|ref|YP_117159.1| cytidine deaminase [Nocardia farcinica IFM 10152] gi|54014425|dbj|BAD55795.1| putative cytidine deaminase [Nocardia farcinica IFM 10152] Length=133 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 81/133 (61%), Positives = 95/133 (72%), Gaps = 0/133 (0%) Query 1 MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECA 60 MP++DWN LR NA + AY PYSRF VGAAAL DG +V+GCNVENVSYGL LCAE Sbjct 1 MPEIDWNSLRDNAFRVMHNAYAPYSRFPVGAAALRADGGIVSGCNVENVSYGLGLCAETV 60 Query 61 VVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLP 120 +V + GGGRLLA++ D G +L+PCGRCRQVL EHGG+ LL+DH P L LLP Sbjct 61 LVGNFIAGGGGRLLAVSVTDSRGEILLPCGRCRQVLYEHGGAGLLVDHRAGPVPLARLLP 120 Query 121 DAFGLDDLPRERR 133 DAFG DDL +R Sbjct 121 DAFGPDDLAAGQR 133 >gi|88856460|ref|ZP_01131118.1| cytidine deaminase [marine actinobacterium PHSC20C1] gi|88814327|gb|EAR24191.1| cytidine deaminase [marine actinobacterium PHSC20C1] Length=138 Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 73/122 (60%), Positives = 93/122 (77%), Gaps = 0/122 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 +DW+ LR AT+A + AYVPYS+F VG AALVDDGRV++G NVEN SYGLTLCAEC +V Sbjct 7 SIDWDALRLVATEALSHAYVPYSKFPVGVAALVDDGRVISGANVENASYGLTLCAECTMV 66 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 ALH TGGG+L+A CVDG G+ LMPCGRCRQ+L EH +L++ + + +++PDA Sbjct 67 SALHMTGGGKLVAFTCVDGKGNALMPCGRCRQLLFEHSAEGMLLETVSGIKTIDEVIPDA 126 Query 123 FG 124 FG Sbjct 127 FG 128 >gi|343926657|ref|ZP_08766155.1| cytidine deaminase [Gordonia alkanivorans NBRC 16433] gi|343763409|dbj|GAA13081.1| cytidine deaminase [Gordonia alkanivorans NBRC 16433] Length=134 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/128 (61%), Positives = 92/128 (72%), Gaps = 0/128 (0%) Query 3 DVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVV 62 ++ WN+LR AT+ + AY PYS + VGAA + DGRVV GCNVENVSYGL +CAE ++V Sbjct 4 EIQWNVLRHRATEMLSHAYAPYSHYPVGAAGVTSDGRVVAGCNVENVSYGLGICAEVSLV 63 Query 63 CALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDA 122 L S G L A+ D G VLMPCGRCRQVLLEHGG +LL+DHP PR L DLLPDA Sbjct 64 AQLISQGDRSLRAVTVTDASGKVLMPCGRCRQVLLEHGGRDLLVDHPAGPRLLSDLLPDA 123 Query 123 FGLDDLPR 130 FG DD+ + Sbjct 124 FGPDDIAQ 131 Lambda K H 0.324 0.142 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130457467840 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40