BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3316
Length=112
Score E
Sequences producing significant alignments: (Bits) Value
gi|289555595|ref|ZP_06444805.1| succinate dehydrogenase cytochro... 228 3e-58
gi|148824520|ref|YP_001289274.1| succinate dehydrogenase cytochr... 227 4e-58
gi|15610452|ref|NP_217833.1| succinate dehydrogenase cytochrome ... 226 6e-58
gi|289444900|ref|ZP_06434644.1| succinate dehydrogenase, cytochr... 226 1e-57
gi|467185|gb|AAA17343.1| L308_F2_64 [Mycobacterium leprae] 206 6e-52
gi|15827295|ref|NP_301558.1| succinate dehydrogenase cytochrome ... 204 3e-51
gi|254820240|ref|ZP_05225241.1| hypothetical protein MintA_09946... 197 3e-49
gi|296168861|ref|ZP_06850533.1| succinate dehydrogenase cytochro... 195 2e-48
gi|342861543|ref|ZP_08718190.1| hypothetical protein MCOL_21761 ... 195 2e-48
gi|41409539|ref|NP_962375.1| hypothetical protein MAP3441 [Mycob... 193 7e-48
gi|118463187|ref|YP_883435.1| succinate dehydrogenase, cytochrom... 192 1e-47
gi|254776730|ref|ZP_05218246.1| hypothetical protein MaviaA2_189... 192 2e-47
gi|240169116|ref|ZP_04747775.1| succinate dehydrogenase (cytochr... 187 4e-46
gi|183981225|ref|YP_001849516.1| succinate dehydrogenase (cytoch... 178 2e-43
gi|169630752|ref|YP_001704401.1| succinate dehydrogenase (cytoch... 177 5e-43
gi|118617052|ref|YP_905384.1| succinate dehydrogenase (cytochrom... 176 8e-43
gi|120402595|ref|YP_952424.1| succinate dehydrogenase, cytochrom... 174 5e-42
gi|315445770|ref|YP_004078649.1| succinate dehydrogenase subunit... 173 7e-42
gi|145225422|ref|YP_001136100.1| succinate dehydrogenase, cytoch... 172 1e-41
gi|118471568|ref|YP_886048.1| succinate dehydrogenase, cytochrom... 171 3e-41
gi|108798201|ref|YP_638398.1| succinate dehydrogenase, cytochrom... 168 2e-40
gi|333921572|ref|YP_004495153.1| succinate dehydrogenase cytochr... 151 4e-35
gi|111023211|ref|YP_706183.1| succinate dehydrogenase hydrophobi... 150 5e-35
gi|226365716|ref|YP_002783499.1| succinate dehydrogenase cytochr... 150 6e-35
gi|226305532|ref|YP_002765492.1| succinate dehydrogenase cytochr... 150 6e-35
gi|297192539|ref|ZP_06909937.1| succinate dehydrogenase cytochro... 150 7e-35
gi|291451705|ref|ZP_06591095.1| succinate dehydrogenase cytochro... 149 1e-34
gi|262201721|ref|YP_003272929.1| succinate dehydrogenase, cytoch... 148 2e-34
gi|328884581|emb|CCA57820.1| Succinate dehydrogenase cytochrome ... 148 3e-34
gi|302544639|ref|ZP_07296981.1| succinate dehydrogenase, cytochr... 148 3e-34
gi|254385208|ref|ZP_05000540.1| succinate dehydrogenase membrane... 148 3e-34
gi|254393799|ref|ZP_05008913.1| succinate dehydrogenase cytochro... 147 4e-34
gi|182436480|ref|YP_001824199.1| putative succinate dehydrogenas... 147 7e-34
gi|29829938|ref|NP_824572.1| succinate dehydrogenase cytochrome ... 147 7e-34
gi|320008969|gb|ADW03819.1| succinate dehydrogenase, cytochrome ... 146 8e-34
gi|319949456|ref|ZP_08023516.1| succinate dehydrogenase, cytochr... 146 9e-34
gi|302536398|ref|ZP_07288740.1| succinate dehydrogenase, cytochr... 145 2e-33
gi|297201915|ref|ZP_06919312.1| succinate dehydrogenase, cytochr... 145 2e-33
gi|337767748|emb|CCB76459.1| putative succinate dehydrogenase me... 145 2e-33
gi|239990194|ref|ZP_04710858.1| putative succinate dehydrogenase... 145 2e-33
gi|345001630|ref|YP_004804484.1| succinate dehydrogenase, cytoch... 145 2e-33
gi|291447202|ref|ZP_06586592.1| succinate dehydrogenase membrane... 145 2e-33
gi|297158116|gb|ADI07828.1| succinate dehydrogenase, cytochrome ... 144 3e-33
gi|291437668|ref|ZP_06577058.1| succinate dehydrogenase membrane... 144 4e-33
gi|312140769|ref|YP_004008105.1| succinate dehydrogenase cytochr... 144 4e-33
gi|302553710|ref|ZP_07306052.1| succinate dehydrogenase, cytochr... 144 4e-33
gi|257054607|ref|YP_003132439.1| succinate dehydrogenase subunit... 144 5e-33
gi|325675591|ref|ZP_08155275.1| succinate dehydrogenase cytochro... 144 5e-33
gi|269795863|ref|YP_003315318.1| succinate dehydrogenase subunit... 144 5e-33
gi|21223234|ref|NP_629013.1| succinate dehydrogenase membrane su... 144 6e-33
>gi|289555595|ref|ZP_06444805.1| succinate dehydrogenase cytochrome B-556 subunit sdhC [Mycobacterium
tuberculosis KZN 605]
gi|289440227|gb|EFD22720.1| succinate dehydrogenase cytochrome B-556 subunit sdhC [Mycobacterium
tuberculosis KZN 605]
Length=152
Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF
Sbjct 41 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 100
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR
Sbjct 101 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 152
>gi|148824520|ref|YP_001289274.1| succinate dehydrogenase cytochrome B-556 subunit sdhC [Mycobacterium
tuberculosis F11]
gi|253800361|ref|YP_003033362.1| succinate dehydrogenase cytochrome B-556 subunit sdhC [Mycobacterium
tuberculosis KZN 1435]
gi|254233926|ref|ZP_04927251.1| succinate dehydrogenase (cytochrome B-556 subunit) sdhC [Mycobacterium
tuberculosis C]
37 more sequence titles
Length=144
Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF
Sbjct 33 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 92
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR
Sbjct 93 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 144
>gi|15610452|ref|NP_217833.1| succinate dehydrogenase cytochrome B-556 subunit [Mycobacterium
tuberculosis H37Rv]
gi|15842908|ref|NP_337945.1| succinate dehydrogenase, cytochrome b-556 subunit [Mycobacterium
tuberculosis CDC1551]
gi|31794497|ref|NP_856990.1| succinate dehydrogenase cytochrome B-556 subunit [Mycobacterium
bovis AF2122/97]
35 more sequence titles
Length=112
Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF
Sbjct 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR
Sbjct 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
>gi|289444900|ref|ZP_06434644.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
tuberculosis T46]
gi|289571545|ref|ZP_06451772.1| succinate dehydrogenase cytochrome B-556 subunit sdhC [Mycobacterium
tuberculosis T17]
gi|289752014|ref|ZP_06511392.1| succinate dehydrogenase cytochrome B-556 subunit sdhC [Mycobacterium
tuberculosis T92]
gi|289755440|ref|ZP_06514818.1| succinate dehydrogenase cytochrome B-556 subunit sdhC [Mycobacterium
tuberculosis EAS054]
gi|289417819|gb|EFD15059.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
tuberculosis T46]
gi|289545299|gb|EFD48947.1| succinate dehydrogenase cytochrome B-556 subunit sdhC [Mycobacterium
tuberculosis T17]
gi|289692601|gb|EFD60030.1| succinate dehydrogenase cytochrome B-556 subunit sdhC [Mycobacterium
tuberculosis T92]
gi|289696027|gb|EFD63456.1| succinate dehydrogenase cytochrome B-556 subunit sdhC [Mycobacterium
tuberculosis EAS054]
Length=112
Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/112 (99%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYG+VAAVLF
Sbjct 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGIVAAVLF 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR
Sbjct 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
>gi|467185|gb|AAA17343.1| L308_F2_64 [Mycobacterium leprae]
Length=244
Score = 206 bits (525), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/112 (89%), Positives = 105/112 (94%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISGATIFFFLFVHVLDAAMLRV+PQTYNAVL+TYK PIVG MEYGLVAAV F
Sbjct 127 MWSWVLHRISGATIFFFLFVHVLDAAMLRVNPQTYNAVLSTYKAPIVGFMEYGLVAAVGF 186
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
H LNGIRVILIDFWSEGPR+QRLMLWII +FLLL+VPAGVV+GIHMWEHFR
Sbjct 187 HGLNGIRVILIDFWSEGPRHQRLMLWIISVIFLLLLVPAGVVIGIHMWEHFR 238
>gi|15827295|ref|NP_301558.1| succinate dehydrogenase cytochrome B-556 subunit [Mycobacterium
leprae TN]
gi|221229773|ref|YP_002503189.1| putative succinate dehydrogenase cytochrome B-556 subunit [Mycobacterium
leprae Br4923]
gi|13092844|emb|CAC30208.1| putative succinate dehydrogenase cytochrome B-556 subunit [Mycobacterium
leprae]
gi|219932880|emb|CAR70793.1| putative succinate dehydrogenase cytochrome B-556 subunit [Mycobacterium
leprae Br4923]
Length=153
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/112 (89%), Positives = 105/112 (94%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISGATIFFFLFVHVLDAAMLRV+PQTYNAVL+TYK PIVG MEYGLVAAV F
Sbjct 36 MWSWVLHRISGATIFFFLFVHVLDAAMLRVNPQTYNAVLSTYKAPIVGFMEYGLVAAVGF 95
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
H LNGIRVILIDFWSEGPR+QRLMLWII +FLLL+VPAGVV+GIHMWEHFR
Sbjct 96 HGLNGIRVILIDFWSEGPRHQRLMLWIISVIFLLLLVPAGVVIGIHMWEHFR 147
>gi|254820240|ref|ZP_05225241.1| hypothetical protein MintA_09946 [Mycobacterium intracellulare
ATCC 13950]
Length=112
Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/112 (86%), Positives = 102/112 (92%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISGATIFFFLFVHVLDAAMLR+SPQTYNAV+ Y+ PIVGLMEYGL+AAVLF
Sbjct 1 MWSWVLHRISGATIFFFLFVHVLDAAMLRISPQTYNAVIHDYQMPIVGLMEYGLIAAVLF 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
H LNGIRVILIDFWSEGPRYQRLM W++G VFLLLMVPAGVV IHM EHFR
Sbjct 61 HGLNGIRVILIDFWSEGPRYQRLMFWVVGVVFLLLMVPAGVVTVIHMMEHFR 112
>gi|296168861|ref|ZP_06850533.1| succinate dehydrogenase cytochrome b558 subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896478|gb|EFG76128.1| succinate dehydrogenase cytochrome b558 subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=151
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/111 (87%), Positives = 102/111 (92%), Gaps = 0/111 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISGATIFFFLFVHVLDAAMLRVSPQTYNAV+ Y+TP+VGLMEYGLVAAVLF
Sbjct 41 MWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHDYQTPVVGLMEYGLVAAVLF 100
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHF 111
H LNGIRVILIDFWSEG RYQ+LM WI+G VFLLLMVPAGVV GIH+ EHF
Sbjct 101 HGLNGIRVILIDFWSEGTRYQKLMFWIVGVVFLLLMVPAGVVTGIHIMEHF 151
>gi|342861543|ref|ZP_08718190.1| hypothetical protein MCOL_21761 [Mycobacterium colombiense CECT
3035]
gi|342131032|gb|EGT84321.1| hypothetical protein MCOL_21761 [Mycobacterium colombiense CECT
3035]
Length=112
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/112 (86%), Positives = 102/112 (92%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISGATIFFFLFVHVLDAAMLRVSPQTYNAV+ Y+ PIVG+MEYGLVAAVLF
Sbjct 1 MWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLVAAVLF 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
H LNGIRVILIDFWSEGPR+Q+LM WI+G VFLLLMVPAGVV IHM EHFR
Sbjct 61 HGLNGIRVILIDFWSEGPRHQKLMFWIVGIVFLLLMVPAGVVTVIHMMEHFR 112
>gi|41409539|ref|NP_962375.1| hypothetical protein MAP3441 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398370|gb|AAS05991.1| SdhC [Mycobacterium avium subsp. paratuberculosis K-10]
Length=151
Score = 193 bits (491), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/112 (85%), Positives = 101/112 (91%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISGATIFFFLFVHVLDAAMLRVSPQTYNAV+ Y+ PIVG+MEYGL+AAVLF
Sbjct 40 MWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLIAAVLF 99
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
H LNGIRVILIDFWSEGPR+QRLM WI+G VFLLLMVPAGVV IHM HFR
Sbjct 100 HGLNGIRVILIDFWSEGPRHQRLMFWIVGVVFLLLMVPAGVVTVIHMLGHFR 151
>gi|118463187|ref|YP_883435.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
avium 104]
gi|118164474|gb|ABK65371.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
avium 104]
gi|336459593|gb|EGO38528.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
avium subsp. paratuberculosis S397]
Length=112
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/112 (85%), Positives = 101/112 (91%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISGATIFFFLFVHVLDAAMLRVSPQTYNAV+ Y+ PIVG+MEYGL+AAVLF
Sbjct 1 MWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLIAAVLF 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
H LNGIRVILIDFWSEGPR+QRLM WI+G VFLLLMVPAGVV IHM HFR
Sbjct 61 HGLNGIRVILIDFWSEGPRHQRLMFWIVGVVFLLLMVPAGVVTVIHMLGHFR 112
>gi|254776730|ref|ZP_05218246.1| hypothetical protein MaviaA2_18966 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=112
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/112 (85%), Positives = 101/112 (91%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISGATIFFFLFVHVLDAAMLRVSPQTYNAV+ Y+ PIVG+MEYGL+AAVLF
Sbjct 1 MWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLIAAVLF 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
H LNGIRVILIDFWSEGPR+QRLM WI+G VFLLLMVPAGVV IHM HFR
Sbjct 61 HGLNGIRVILIDFWSEGPRHQRLMFWIVGVVFLLLMVPAGVVTVIHMVGHFR 112
>gi|240169116|ref|ZP_04747775.1| succinate dehydrogenase (cytochrome B-556 subunit) SdhC [Mycobacterium
kansasii ATCC 12478]
Length=112
Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/112 (78%), Positives = 103/112 (92%), Gaps = 0/112 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+GATIFFFLFVHVLD A++RVSPQ YN+V+ TYKTP+VGLME+GLV AV +
Sbjct 1 MWSWVLHRITGATIFFFLFVHVLDTALVRVSPQAYNSVIGTYKTPVVGLMEFGLVVAVSY 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR 112
HALNGIR+ILIDFWS+GPRYQRLML ++G V+LL++VPA VV+GIHMWEHFR
Sbjct 61 HALNGIRIILIDFWSQGPRYQRLMLGVVGIVWLLILVPAAVVLGIHMWEHFR 112
>gi|183981225|ref|YP_001849516.1| succinate dehydrogenase (cytochrome B-556 subunit) SdhC [Mycobacterium
marinum M]
gi|183174551|gb|ACC39661.1| succinate dehydrogenase (cytochrome B-556 subunit) SdhC [Mycobacterium
marinum M]
Length=112
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/111 (76%), Positives = 99/111 (90%), Gaps = 0/111 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+GA IFFFLFVHVLD A++RVSPQ YN+V+ TYKTPIVGLME+GLV AV +
Sbjct 1 MWSWVLHRITGAAIFFFLFVHVLDTALVRVSPQAYNSVIDTYKTPIVGLMEFGLVIAVSY 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHF 111
HALNGIR+ILIDFWSEGPRYQRLML ++G +LL++VP+ VV+GIHM EHF
Sbjct 61 HALNGIRIILIDFWSEGPRYQRLMLAVVGVAWLLILVPSAVVLGIHMAEHF 111
>gi|169630752|ref|YP_001704401.1| succinate dehydrogenase (cytochrome b-556 subunit) SdhC [Mycobacterium
abscessus ATCC 19977]
gi|169242719|emb|CAM63747.1| Probable succinate dehydrogenase (cytochrome b-556 subunit) SdhC
[Mycobacterium abscessus]
Length=140
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/111 (75%), Positives = 100/111 (91%), Gaps = 0/111 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+GATIFFFLFVHVLD A++RVSP++YN+V+ TYKTPIVGLME GLVAAVL+
Sbjct 29 MWSWVLHRITGATIFFFLFVHVLDTALVRVSPESYNSVIETYKTPIVGLMELGLVAAVLY 88
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHF 111
HALNG+RVIL+DFWS+GPRYQRLMLWIIG+V+ ++MVPA + +HM E F
Sbjct 89 HALNGVRVILVDFWSKGPRYQRLMLWIIGAVWFVVMVPAVTRILMHMAERF 139
>gi|118617052|ref|YP_905384.1| succinate dehydrogenase (cytochrome B-556 subunit) SdhC [Mycobacterium
ulcerans Agy99]
gi|118569162|gb|ABL03913.1| succinate dehydrogenase (cytochrome B-556 subunit) SdhC [Mycobacterium
ulcerans Agy99]
Length=112
Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 83/111 (75%), Positives = 98/111 (89%), Gaps = 0/111 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+GA IFFFLFVHVLD A++RV PQ YN+V+ TYKTPIVGLME+GLV AV +
Sbjct 1 MWSWVLHRITGAAIFFFLFVHVLDTALVRVRPQAYNSVIDTYKTPIVGLMEFGLVIAVSY 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHF 111
HALNGIR+ILIDFWSEGPRYQRLML ++G +LL++VP+ VV+GIHM EHF
Sbjct 61 HALNGIRIILIDFWSEGPRYQRLMLAVVGVAWLLILVPSAVVLGIHMAEHF 111
>gi|120402595|ref|YP_952424.1| succinate dehydrogenase, cytochrome b subunit [Mycobacterium
vanbaalenii PYR-1]
gi|119955413|gb|ABM12418.1| succinate dehydrogenase subunit C [Mycobacterium vanbaalenii
PYR-1]
Length=142
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/111 (75%), Positives = 95/111 (86%), Gaps = 0/111 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISGATIFFFLFVHVLD A++RVSPQ YN V+ TYKTPIVGLME GLVAAVL+
Sbjct 31 MWSWVLHRISGATIFFFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEIGLVAAVLY 90
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHF 111
HALNGIR+ILIDFWSEGPR+QR MLW+I VF+ + + A V+G+HM E F
Sbjct 91 HALNGIRIILIDFWSEGPRHQRKMLWVIAGVFIAVFIAALGVIGMHMAERF 141
>gi|315445770|ref|YP_004078649.1| succinate dehydrogenase subunit C [Mycobacterium sp. Spyr1]
gi|315264073|gb|ADU00815.1| succinate dehydrogenase subunit C [Mycobacterium sp. Spyr1]
Length=142
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/111 (75%), Positives = 94/111 (85%), Gaps = 0/111 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSW+ HRISGATIFFFLFVHVLD A++RVSPQ YN V+ TYKTPIVGLME GLVAAVL+
Sbjct 31 MWSWLLHRISGATIFFFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEIGLVAAVLY 90
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHF 111
HALNGIR+ILIDFWSEGPR+QR MLWII +FL+L V+G+HM E F
Sbjct 91 HALNGIRIILIDFWSEGPRHQRKMLWIIAGIFLVLFTAGLGVIGMHMAERF 141
>gi|145225422|ref|YP_001136100.1| succinate dehydrogenase, cytochrome b subunit [Mycobacterium
gilvum PYR-GCK]
gi|145217908|gb|ABP47312.1| succinate dehydrogenase subunit C [Mycobacterium gilvum PYR-GCK]
Length=142
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/111 (74%), Positives = 94/111 (85%), Gaps = 0/111 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSW+ HRISGATIFFFLFVHVLD A++RVSPQ YN V+ TYKTPIVGLME GLVAAVL+
Sbjct 31 MWSWLLHRISGATIFFFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEIGLVAAVLY 90
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHF 111
HALNGIR+ILIDFWSEGPR+QR MLWII +F++L V+G+HM E F
Sbjct 91 HALNGIRIILIDFWSEGPRHQRKMLWIIAGIFIVLFTAGLGVIGMHMAERF 141
>gi|118471568|ref|YP_886048.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
smegmatis str. MC2 155]
gi|118172855|gb|ABK73751.1| succinate dehydrogenase, cytochrome b556 subunit [Mycobacterium
smegmatis str. MC2 155]
Length=138
Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/111 (74%), Positives = 95/111 (86%), Gaps = 0/111 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+GATIFFFLFVHVLD A++RVSPQ YN V+ TYKTPIVGLME GLVAAVLF
Sbjct 27 MWSWVLHRITGATIFFFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEIGLVAAVLF 86
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHF 111
HALNGIRVILIDFW++GPRYQR ML +I +FL++ + A V+G+HM E F
Sbjct 87 HALNGIRVILIDFWAKGPRYQRQMLAVIAGLFLVIFIAAVGVIGMHMVERF 137
>gi|108798201|ref|YP_638398.1| succinate dehydrogenase, cytochrome b subunit [Mycobacterium
sp. MCS]
gi|119867297|ref|YP_937249.1| succinate dehydrogenase, cytochrome b subunit [Mycobacterium
sp. KMS]
gi|126433858|ref|YP_001069549.1| succinate dehydrogenase, cytochrome b subunit [Mycobacterium
sp. JLS]
gi|108768620|gb|ABG07342.1| succinate dehydrogenase subunit C [Mycobacterium sp. MCS]
gi|119693386|gb|ABL90459.1| succinate dehydrogenase subunit C [Mycobacterium sp. KMS]
gi|126233658|gb|ABN97058.1| succinate dehydrogenase subunit C [Mycobacterium sp. JLS]
Length=142
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/111 (71%), Positives = 94/111 (85%), Gaps = 0/111 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISGA IFFFLFVHV+D A++RVSP+ YNAV+ TYKTPI+GLME GLV AVL+
Sbjct 31 MWSWVLHRISGAAIFFFLFVHVVDTALVRVSPEAYNAVIETYKTPIIGLMEIGLVGAVLY 90
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHF 111
HALNGIRVILIDFWS+G RYQR MLW++ VF+ +M+ + V+G+HM E F
Sbjct 91 HALNGIRVILIDFWSKGARYQRQMLWVVAGVFITVMIASLGVIGMHMAERF 141
>gi|333921572|ref|YP_004495153.1| succinate dehydrogenase cytochrome b subunit [Amycolicicoccus
subflavus DQS3-9A1]
gi|333483793|gb|AEF42353.1| Succinate dehydrogenase cytochrome b subunit [Amycolicicoccus
subflavus DQS3-9A1]
Length=133
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 65/99 (66%), Positives = 86/99 (87%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+G T+FFFLFVHVLD A++RVSP+ Y+AV+ TYK P+VG +E GL+AAV++
Sbjct 24 MWSWVLHRITGVTLFFFLFVHVLDTALVRVSPEAYDAVIETYKNPVVGALEIGLLAAVIY 83
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HA NG+RVILIDFWS+GP+YQRLM WI+ ++ + +M+PA
Sbjct 84 HAFNGVRVILIDFWSKGPKYQRLMFWIVMAISVAIMIPA 122
>gi|111023211|ref|YP_706183.1| succinate dehydrogenase hydrophobic membrane anchor protein [Rhodococcus
jostii RHA1]
gi|110822741|gb|ABG98025.1| probable succinate dehydrogenase hydrophobic membrane anchor
protein [Rhodococcus jostii RHA1]
Length=134
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 86/100 (86%), Gaps = 0/100 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+G FFFLFVHVLD A++RV+P TY++V+ TYK PIVGLME LVAAVL+
Sbjct 24 MWSWVLHRITGVMTFFFLFVHVLDTALVRVNPDTYDSVIETYKNPIVGLMELALVAAVLY 83
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAG 100
HALNG+RV+L+DFWS+GP+YQRLMLW+I +++ L+M+P
Sbjct 84 HALNGVRVMLVDFWSKGPQYQRLMLWVILAIWFLVMIPGA 123
>gi|226365716|ref|YP_002783499.1| succinate dehydrogenase cytochrome b subunit [Rhodococcus opacus
B4]
gi|226244206|dbj|BAH54554.1| succinate dehydrogenase cytochrome b subunit [Rhodococcus opacus
B4]
Length=156
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 86/100 (86%), Gaps = 0/100 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+G FFFLFVHVLD A++RV+P TY++V+ TYK PIVGLME LVAAVL+
Sbjct 46 MWSWVLHRITGVMTFFFLFVHVLDTALVRVNPDTYDSVIETYKNPIVGLMELALVAAVLY 105
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAG 100
HALNG+RV+L+DFWS+GP+YQRLMLW+I +++ L+M+P
Sbjct 106 HALNGVRVMLVDFWSKGPQYQRLMLWVILAIWFLVMIPGA 145
>gi|226305532|ref|YP_002765492.1| succinate dehydrogenase cytochrome b subunit [Rhodococcus erythropolis
PR4]
gi|229489604|ref|ZP_04383467.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodococcus
erythropolis SK121]
gi|226184649|dbj|BAH32753.1| probable succinate dehydrogenase cytochrome b subunit [Rhodococcus
erythropolis PR4]
gi|229323701|gb|EEN89459.1| succinate dehydrogenase, cytochrome b556 subunit [Rhodococcus
erythropolis SK121]
Length=142
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/111 (63%), Positives = 91/111 (82%), Gaps = 1/111 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+G FFFLFVHVLD A++RV+P TY+AV+ TYK P+VGLME GLV VL+
Sbjct 32 MWSWVLHRITGVATFFFLFVHVLDTALVRVNPDTYDAVIDTYKNPLVGLMEIGLVGVVLY 91
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMW-EH 110
HALNG+RV+L+DFWS+GP+YQR+MLW I +++ L+M+P + I+M+ EH
Sbjct 92 HALNGVRVMLVDFWSKGPKYQRVMLWTILTIWFLVMIPGAGRILINMFAEH 142
>gi|297192539|ref|ZP_06909937.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
pristinaespiralis ATCC 25486]
gi|297151391|gb|EDY61989.2| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
pristinaespiralis ATCC 25486]
Length=126
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/99 (69%), Positives = 86/99 (87%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTPIV L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPIVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFWS+GPRYQ+ MLW + +++ +LMV A
Sbjct 73 HALNGLRVIAVDFWSKGPRYQKQMLWSVMAIWFVLMVGA 111
>gi|291451705|ref|ZP_06591095.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
albus J1074]
gi|291354654|gb|EFE81556.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
albus J1074]
Length=126
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/99 (71%), Positives = 85/99 (86%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTPIV L+EYGLVAAVLF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPIVALLEYGLVAAVLF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFWS+G RYQ+ MLW + V+L+LMV A
Sbjct 73 HALNGLRVIAVDFWSKGARYQKQMLWSVVGVWLVLMVGA 111
>gi|262201721|ref|YP_003272929.1| succinate dehydrogenase, cytochrome b556 subunit [Gordonia bronchialis
DSM 43247]
gi|262085068|gb|ACY21036.1| succinate dehydrogenase, cytochrome b556 subunit [Gordonia bronchialis
DSM 43247]
Length=139
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/101 (69%), Positives = 84/101 (84%), Gaps = 0/101 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+G TIFFFLFVHVLD A++RV P Y+ ++ATYKTPIVGLME GLVA VLF
Sbjct 25 MWSWVLHRITGVTIFFFLFVHVLDTAVIRVDPNQYDEIIATYKTPIVGLMEIGLVACVLF 84
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGV 101
HA NG+R+ILIDFWS+GP+YQR MLW I ++F+++ A V
Sbjct 85 HAFNGLRIILIDFWSKGPKYQRQMLWAILTLFVIVFGAATV 125
>gi|328884581|emb|CCA57820.1| Succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
venezuelae ATCC 10712]
Length=126
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/96 (69%), Positives = 84/96 (88%), Gaps = 0/96 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTPIV L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPIVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLM 96
HALNG+RVI +DFWS+GPRYQ+ MLW + ++++LM
Sbjct 73 HALNGLRVIAVDFWSKGPRYQKQMLWTVVGIWVVLM 108
>gi|302544639|ref|ZP_07296981.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302462257|gb|EFL25350.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
himastatinicus ATCC 53653]
Length=126
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/99 (69%), Positives = 85/99 (86%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD +++RVSP+ Y+ V+ATYKTPIV LMEYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTSLVRVSPEAYDDVVATYKTPIVNLMEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFWS+GP+YQR MLW + V+ +LM+ A
Sbjct 73 HALNGLRVIAVDFWSKGPKYQRQMLWSVVGVWAVLMLGA 111
>gi|254385208|ref|ZP_05000540.1| succinate dehydrogenase membrane subunit [Streptomyces sp. Mg1]
gi|194344085|gb|EDX25051.1| succinate dehydrogenase membrane subunit [Streptomyces sp. Mg1]
Length=126
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/99 (68%), Positives = 85/99 (86%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYK PIV L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKNPIVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFWS+GPRYQ+ MLW + S+++ LM+ A
Sbjct 73 HALNGLRVIAVDFWSKGPRYQKQMLWSVVSLWVFLMIGA 111
>gi|254393799|ref|ZP_05008913.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
clavuligerus ATCC 27064]
gi|294814602|ref|ZP_06773245.1| Succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
clavuligerus ATCC 27064]
gi|197707400|gb|EDY53212.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
clavuligerus ATCC 27064]
gi|294327201|gb|EFG08844.1| Succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
clavuligerus ATCC 27064]
Length=126
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/99 (68%), Positives = 84/99 (85%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+A YKTPIV L+EYGLVAAVLF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEDYDKVVAVYKTPIVALLEYGLVAAVLF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFWS+GPRYQ+ MLW + ++++LM A
Sbjct 73 HALNGLRVIAVDFWSKGPRYQKQMLWTVMGIWIVLMAGA 111
>gi|182436480|ref|YP_001824199.1| putative succinate dehydrogenase membrane subunit [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326777101|ref|ZP_08236366.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
cf. griseus XylebKG-1]
gi|178464996|dbj|BAG19516.1| putative succinate dehydrogenase membrane subunit [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326657434|gb|EGE42280.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
griseus XylebKG-1]
Length=126
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 65/99 (66%), Positives = 86/99 (87%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTPIV L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPIVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+R+I +DFW++GPR+Q+ MLW + ++++LMV A
Sbjct 73 HALNGLRIIAVDFWAKGPRFQKQMLWTVLGIWIVLMVGA 111
>gi|29829938|ref|NP_824572.1| succinate dehydrogenase cytochrome b-556 subunit [Streptomyces
avermitilis MA-4680]
gi|29607048|dbj|BAC71107.1| putative succinate dehydrogenase cytochrome b-556 subunit (complex
II) [Streptomyces avermitilis MA-4680]
Length=126
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/99 (67%), Positives = 86/99 (87%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V++TYKTPIV ++EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEDYDKVVSTYKTPIVAVLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFWS+GPRYQ+ MLW + ++L+LM+ A
Sbjct 73 HALNGLRVIAVDFWSKGPRYQKQMLWSVVVLWLVLMIGA 111
>gi|320008969|gb|ADW03819.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
flavogriseus ATCC 33331]
Length=126
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 64/99 (65%), Positives = 86/99 (87%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTP+V L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKTPLVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+R++ +DFW++GPRYQ+ MLW + ++++LMV A
Sbjct 73 HALNGLRIVAVDFWAKGPRYQKQMLWTVLGIWIVLMVGA 111
>gi|319949456|ref|ZP_08023516.1| succinate dehydrogenase, cytochrome b subunit [Dietzia cinnamea
P4]
gi|319436882|gb|EFV91942.1| succinate dehydrogenase, cytochrome b subunit [Dietzia cinnamea
P4]
Length=135
Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/110 (62%), Positives = 89/110 (81%), Gaps = 0/110 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRISG IFFFLFVHVLD +++ VSP++YNAV+ TYKTPIVGLME GLVA VLF
Sbjct 25 MWSWVAHRISGVAIFFFLFVHVLDTSLVTVSPESYNAVIDTYKTPIVGLMEIGLVALVLF 84
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEH 110
HALNG+R++L+DFWS+G +YQR MLW I ++++++ A + ++EH
Sbjct 85 HALNGLRIVLVDFWSKGAKYQRQMLWTILAIWVVVFAAATARLLFLLFEH 134
>gi|302536398|ref|ZP_07288740.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. C]
gi|302445293|gb|EFL17109.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. C]
Length=126
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/96 (69%), Positives = 84/96 (88%), Gaps = 0/96 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTPIV L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKTPIVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLM 96
HALNG+RVI +DFWS+GPR+Q+ MLW + +++LLM
Sbjct 73 HALNGLRVIAVDFWSKGPRHQKTMLWWVVGIWVLLM 108
>gi|297201915|ref|ZP_06919312.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sviceus ATCC 29083]
gi|197712711|gb|EDY56745.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sviceus ATCC 29083]
Length=126
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/99 (66%), Positives = 85/99 (86%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTP+V +EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEDYDKVVATYKTPLVACLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFWS+GPRYQ+ MLW + ++++LM+ A
Sbjct 73 HALNGLRVIAVDFWSKGPRYQKQMLWSVVGLWVVLMIGA 111
>gi|337767748|emb|CCB76459.1| putative succinate dehydrogenase membrane subunit [Streptomyces
cattleya NRRL 8057]
Length=114
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/99 (64%), Positives = 84/99 (85%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSPQ Y+ V++TYK P+V L+EYGLVAA+LF
Sbjct 1 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPQAYDTVVSTYKNPVVNLLEYGLVAAILF 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RV+ +DFW++GP+YQR MLW + ++++LM A
Sbjct 61 HALNGLRVVAVDFWAKGPKYQRQMLWTVVGIWVVLMAGA 99
>gi|239990194|ref|ZP_04710858.1| putative succinate dehydrogenase membrane subunit [Streptomyces
roseosporus NRRL 11379]
Length=114
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/99 (66%), Positives = 85/99 (86%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTPIV L+EYGLVAA+LF
Sbjct 1 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKTPIVALLEYGLVAAILF 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+R+I +DFW++GPR Q+ MLW + ++++LMV A
Sbjct 61 HALNGLRIIAVDFWAKGPRLQKQMLWTVLGIWIVLMVGA 99
>gi|345001630|ref|YP_004804484.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. SirexAA-E]
gi|344317256|gb|AEN11944.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
sp. SirexAA-E]
Length=126
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/99 (64%), Positives = 86/99 (87%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTP+V L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDEVVATYKTPLVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+R++ +DFW++GPR+Q+ MLW + ++++LMV A
Sbjct 73 HALNGLRIVAVDFWAKGPRHQKTMLWTVLGIWIVLMVGA 111
>gi|291447202|ref|ZP_06586592.1| succinate dehydrogenase membrane subunit [Streptomyces roseosporus
NRRL 15998]
gi|291350149|gb|EFE77053.1| succinate dehydrogenase membrane subunit [Streptomyces roseosporus
NRRL 15998]
Length=126
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/99 (66%), Positives = 85/99 (86%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTPIV L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKTPIVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+R+I +DFW++GPR Q+ MLW + ++++LMV A
Sbjct 73 HALNGLRIIAVDFWAKGPRLQKQMLWTVLGIWIVLMVGA 111
>gi|297158116|gb|ADI07828.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
bingchenggensis BCW-1]
Length=115
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/99 (65%), Positives = 84/99 (85%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD +++RVSP+ Y+ V+ATYK PIV +MEYGLVAA+LF
Sbjct 1 MWSWVAHRVTGVLIFFFLFVHVLDTSLVRVSPEAYDDVVATYKNPIVNVMEYGLVAAILF 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFWS+GP+YQ+ MLW + ++++LM A
Sbjct 61 HALNGLRVIAVDFWSKGPKYQKQMLWSVVGIWVVLMAGA 99
>gi|291437668|ref|ZP_06577058.1| succinate dehydrogenase membrane subunit [Streptomyces ghanaensis
ATCC 14672]
gi|291340563|gb|EFE67519.1| succinate dehydrogenase membrane subunit [Streptomyces ghanaensis
ATCC 14672]
Length=126
Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/99 (67%), Positives = 85/99 (86%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTPIV L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDQVVATYKTPIVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFW +G RYQ+ MLW + +V+++LM+ A
Sbjct 73 HALNGLRVIAVDFWIKGARYQKQMLWTVVAVWVVLMLGA 111
>gi|312140769|ref|YP_004008105.1| succinate dehydrogenase cytochrome b subunit sdhc [Rhodococcus
equi 103S]
gi|311890108|emb|CBH49426.1| succinate dehydrogenase cytochrome b subunit SdhC [Rhodococcus
equi 103S]
Length=140
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/100 (63%), Positives = 84/100 (84%), Gaps = 0/100 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+G FFFLFVHVLD A++RV+P TY+ V+ TYK P+VGLME LVA VL+
Sbjct 30 MWSWVLHRITGVATFFFLFVHVLDTALVRVNPDTYDRVIETYKNPLVGLMELALVAMVLY 89
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAG 100
HALNG+RV+L+DFWS+GP+YQR+MLW+I +++ ++M+P
Sbjct 90 HALNGLRVMLVDFWSKGPQYQRVMLWVIIAIWFVVMIPGA 129
>gi|302553710|ref|ZP_07306052.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302471328|gb|EFL34421.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
viridochromogenes DSM 40736]
Length=126
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/99 (67%), Positives = 85/99 (86%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTPIV L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVATYKTPIVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFW +G RYQ+ MLW + +V+++LM+ A
Sbjct 73 HALNGLRVIAVDFWIKGARYQKQMLWTVVAVWVVLMLGA 111
>gi|257054607|ref|YP_003132439.1| succinate dehydrogenase subunit C [Saccharomonospora viridis
DSM 43017]
gi|256584479|gb|ACU95612.1| succinate dehydrogenase subunit C [Saccharomonospora viridis
DSM 43017]
Length=116
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/99 (67%), Positives = 82/99 (83%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+G FFFLFVHVLD A++RVSP TY+A++ TYK PIV LME GLV AVL+
Sbjct 1 MWSWVLHRITGVLTFFFLFVHVLDTALVRVSPNTYDAIIETYKNPIVNLMEVGLVGAVLY 60
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNGIRVIL+DFWS+G +YQ +MLW + V++L+M+P
Sbjct 61 HALNGIRVILVDFWSKGAKYQHVMLWSLIGVWVLVMIPG 99
>gi|325675591|ref|ZP_08155275.1| succinate dehydrogenase cytochrome b558 subunit [Rhodococcus
equi ATCC 33707]
gi|325553562|gb|EGD23240.1| succinate dehydrogenase cytochrome b558 subunit [Rhodococcus
equi ATCC 33707]
Length=134
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 63/100 (63%), Positives = 84/100 (84%), Gaps = 0/100 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HRI+G FFFLFVHVLD A++RV+P TY+ V+ TYK P+VGLME LVA VL+
Sbjct 24 MWSWVLHRITGVATFFFLFVHVLDTALVRVNPDTYDRVIETYKNPLVGLMELALVAMVLY 83
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAG 100
HALNG+RV+L+DFWS+GP+YQR+MLW+I +++ ++M+P
Sbjct 84 HALNGLRVMLVDFWSKGPQYQRVMLWVIIAIWFVVMIPGA 123
>gi|269795863|ref|YP_003315318.1| succinate dehydrogenase subunit C [Sanguibacter keddieii DSM
10542]
gi|269098048|gb|ACZ22484.1| succinate dehydrogenase subunit C [Sanguibacter keddieii DSM
10542]
Length=126
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 63/96 (66%), Positives = 83/96 (87%), Gaps = 0/96 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFL VHVLD A++RVSP+ YNAV+ TY+TPI+GL E GLVAA++F
Sbjct 16 MWSWVAHRVTGVLIFFFLLVHVLDTALVRVSPEAYNAVIGTYQTPIMGLGEAGLVAAIVF 75
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLM 96
HA NGIR+IL+DFW++GPRYQR+MLW++ +F++ M
Sbjct 76 HAFNGIRIILVDFWAKGPRYQRVMLWVVIGLFVVTM 111
>gi|21223234|ref|NP_629013.1| succinate dehydrogenase membrane subunit [Streptomyces coelicolor
A3(2)]
gi|289769556|ref|ZP_06528934.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
lividans TK24]
gi|7649588|emb|CAB89077.1| putative succinate dehydrogenase membrane subunit [Streptomyces
coelicolor A3(2)]
gi|289699755|gb|EFD67184.1| succinate dehydrogenase, cytochrome b556 subunit [Streptomyces
lividans TK24]
Length=126
Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/99 (66%), Positives = 85/99 (86%), Gaps = 0/99 (0%)
Query 1 MWSWVCHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLF 60
MWSWV HR++G IFFFLFVHVLD A++RVSP+ Y+ V+ATYKTPIV L+EYGLVAA+LF
Sbjct 13 MWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDTVVATYKTPIVALLEYGLVAAILF 72
Query 61 HALNGIRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPA 99
HALNG+RVI +DFW +G RYQ+ MLW + +++++LM+ A
Sbjct 73 HALNGLRVIAVDFWVKGARYQKQMLWTVVALWVVLMLGA 111
Lambda K H
0.335 0.145 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128047486336
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40