BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3317
Length=144
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610453|ref|NP_217834.1| succinate dehydrogenase hydrophobic... 291 2e-77
gi|308406119|ref|ZP_07669513.1| succinate dehydrogenase hydropho... 291 2e-77
gi|15842909|ref|NP_337946.1| succinate dehydrogenase, hydrophobi... 290 4e-77
gi|298526794|ref|ZP_07014203.1| SdhD [Mycobacterium tuberculosis... 290 4e-77
gi|289747136|ref|ZP_06506514.1| succinate dehydrogenase hydropho... 289 1e-76
gi|289759462|ref|ZP_06518840.1| succinate dehydrogenase hydropho... 288 1e-76
gi|340628301|ref|YP_004746753.1| putative succinate dehydrogenas... 288 2e-76
gi|306782370|ref|ZP_07420707.1| succinate dehydrogenase hydropho... 286 5e-76
gi|308371309|ref|ZP_07667132.1| succinate dehydrogenase hydropho... 286 5e-76
gi|308372499|ref|ZP_07667393.1| succinate dehydrogenase hydropho... 286 7e-76
gi|296168860|ref|ZP_06850532.1| succinate dehydrogenase cytochro... 263 6e-69
gi|254820241|ref|ZP_05225242.1| succinate dehydrogenase hydropho... 260 5e-68
gi|342861544|ref|ZP_08718191.1| succinate dehydrogenase hydropho... 257 5e-67
gi|118464043|ref|YP_883436.1| succinate dehydrogenase hydrophobi... 256 6e-67
gi|15827294|ref|NP_301557.1| succinate dehydrogenase hydrophobic... 254 3e-66
gi|169630753|ref|YP_001704402.1| succinate dehydrogenase, hydrop... 250 5e-65
gi|183981224|ref|YP_001849515.1| succinate dehydrogenase (hydrop... 242 2e-62
gi|240169115|ref|ZP_04747774.1| succinate dehydrogenase (hydroph... 240 4e-62
gi|41409540|ref|NP_962376.1| SdhD [Mycobacterium avium subsp. pa... 239 1e-61
gi|118617053|ref|YP_905385.1| succinate dehydrogenase (hydrophob... 234 3e-60
gi|108798200|ref|YP_638397.1| succinate dehydrogenase subunit D ... 234 3e-60
gi|120402594|ref|YP_952423.1| putative succinate dehydrogenase [... 233 5e-60
gi|126433857|ref|YP_001069548.1| succinate dehydrogenase subunit... 233 8e-60
gi|145225423|ref|YP_001136101.1| putative succinate dehydrogenas... 230 7e-59
gi|315445771|ref|YP_004078650.1| succinate dehydrogenase subunit... 228 2e-58
gi|118473638|ref|YP_886047.1| succinate dehydrogenase hydrophobi... 226 8e-58
gi|333991784|ref|YP_004524398.1| succinate dehydrogenase (hydrop... 218 2e-55
gi|343926655|ref|ZP_08766153.1| succinate dehydrogenase hydropho... 209 1e-52
gi|111023210|ref|YP_706182.1| succinate dehydrogenase hydrophobi... 208 2e-52
gi|226305531|ref|YP_002765491.1| succinate dehydrogenase hydroph... 207 4e-52
gi|312140770|ref|YP_004008106.1| succinate dehydrogenase membran... 206 7e-52
gi|54022915|ref|YP_117157.1| putative succinate dehydrogenase me... 202 1e-50
gi|326381947|ref|ZP_08203640.1| succinate dehydrogenase hydropho... 193 6e-48
gi|296138695|ref|YP_003645938.1| succinate dehydrogenase cytochr... 193 7e-48
gi|262201720|ref|YP_003272928.1| succinate dehydrogenase hydroph... 189 1e-46
gi|319949457|ref|ZP_08023517.1| succinate dehydrogenase hydropho... 179 1e-43
gi|300782782|ref|YP_003763073.1| succinate dehydrogenase hydroph... 172 1e-41
gi|320008970|gb|ADW03820.1| succinate dehydrogenase cytochrome b... 166 8e-40
gi|239990193|ref|ZP_04710857.1| putative succinate dehydrogenase... 166 1e-39
gi|182436481|ref|YP_001824200.1| putative succinate dehydrogenas... 165 2e-39
gi|345001629|ref|YP_004804483.1| putative succinate dehydrogenas... 164 4e-39
gi|256380450|ref|YP_003104110.1| Succinate dehydrogenase hydroph... 164 6e-39
gi|254385209|ref|ZP_05000541.1| succinate dehydrogenase membrane... 163 8e-39
gi|336177047|ref|YP_004582422.1| succinate dehydrogenase hydroph... 162 1e-38
gi|152967896|ref|YP_001363680.1| succinate dehydrogenase hydroph... 162 1e-38
gi|302536397|ref|ZP_07288739.1| succinate dehydrogenase membrane... 162 2e-38
gi|333921573|ref|YP_004495154.1| succinate dehydrogenase hydroph... 161 3e-38
gi|284029309|ref|YP_003379240.1| Succinate dehydrogenase hydroph... 161 3e-38
gi|302524159|ref|ZP_07276501.1| succinate dehydrogenase hydropho... 157 6e-37
gi|290957988|ref|YP_003489170.1| succinate dehydrogenase membran... 154 5e-36
>gi|15610453|ref|NP_217834.1| succinate dehydrogenase hydrophobic membrane anchor subunit SdhD
[Mycobacterium tuberculosis H37Rv]
gi|148663181|ref|YP_001284704.1| succinate dehydrogenase hydrophobic membrane anchor subunit SdhD
[Mycobacterium tuberculosis H37Ra]
gi|167968952|ref|ZP_02551229.1| succinate dehydrogenase hydrophobic membrane anchor subunit SdhD
[Mycobacterium tuberculosis H37Ra]
gi|2894227|emb|CAA17089.1| PROBABLE SUCCINATE DEHYDROGENASE (HYDROPHOBIC MEMBRANE ANCHOR
SUBUNIT) SDHD (SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE)
(FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE) [Mycobacterium
tuberculosis H37Rv]
gi|148507333|gb|ABQ75142.1| succinate dehydrogenase hydrophobic membrane anchor subunit SdhD
[Mycobacterium tuberculosis H37Ra]
Length=144
Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/144 (100%), Positives = 144/144 (100%), Gaps = 0/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW
Sbjct 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL
Sbjct 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
LVLSMLFTLMLGTYVIVTFDPNIS
Sbjct 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
>gi|308406119|ref|ZP_07669513.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu012]
gi|308364447|gb|EFP53298.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu012]
Length=149
Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/144 (100%), Positives = 144/144 (100%), Gaps = 0/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW
Sbjct 6 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 65
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL
Sbjct 66 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 125
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
LVLSMLFTLMLGTYVIVTFDPNIS
Sbjct 126 LVLSMLFTLMLGTYVIVTFDPNIS 149
>gi|15842909|ref|NP_337946.1| succinate dehydrogenase, hydrophobic membrane anchor protein
[Mycobacterium tuberculosis CDC1551]
gi|31794498|ref|NP_856991.1| succinate dehydrogenase hydrophobic membrane anchor subunit SdhD
[Mycobacterium bovis AF2122/97]
gi|121639241|ref|YP_979465.1| putative succinate dehydrogenase (hydrophobic membrane anchor
subunit) sdhD [Mycobacterium bovis BCG str. Pasteur 1173P2]
43 more sequence titles
Length=144
Score = 290 bits (743), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 143/144 (99%), Positives = 144/144 (100%), Gaps = 0/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGH+FIMLMW
Sbjct 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHLFIMLMW 60
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL
Sbjct 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
LVLSMLFTLMLGTYVIVTFDPNIS
Sbjct 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
>gi|298526794|ref|ZP_07014203.1| SdhD [Mycobacterium tuberculosis 94_M4241A]
gi|308232415|ref|ZP_07664076.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu001]
gi|308379481|ref|ZP_07668968.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu010]
6 more sequence titles
Length=149
Score = 290 bits (742), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 143/144 (99%), Positives = 144/144 (100%), Gaps = 0/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGH+FIMLMW
Sbjct 6 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHLFIMLMW 65
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL
Sbjct 66 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 125
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
LVLSMLFTLMLGTYVIVTFDPNIS
Sbjct 126 LVLSMLFTLMLGTYVIVTFDPNIS 149
>gi|289747136|ref|ZP_06506514.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis 02_1987]
gi|294993740|ref|ZP_06799431.1| succinate dehydrogenase hydrophobic membrane anchor protein [Mycobacterium
tuberculosis 210]
gi|289687664|gb|EFD55152.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis 02_1987]
gi|326902454|gb|EGE49387.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis W-148]
Length=144
Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/144 (99%), Positives = 143/144 (99%), Gaps = 0/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGH+FIMLMW
Sbjct 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHLFIMLMW 60
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKD TRFWLNSL
Sbjct 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDATRFWLNSL 120
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
LVLSMLFTLMLGTYVIVTFDPNIS
Sbjct 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
>gi|289759462|ref|ZP_06518840.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis T85]
gi|289715026|gb|EFD79038.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis T85]
gi|339296145|gb|AEJ48256.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis CCDC5079]
gi|339299754|gb|AEJ51864.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis CCDC5180]
Length=149
Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/144 (99%), Positives = 143/144 (99%), Gaps = 0/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGH+FIMLMW
Sbjct 6 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHLFIMLMW 65
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKD TRFWLNSL
Sbjct 66 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDATRFWLNSL 125
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
LVLSMLFTLMLGTYVIVTFDPNIS
Sbjct 126 LVLSMLFTLMLGTYVIVTFDPNIS 149
>gi|340628301|ref|YP_004746753.1| putative succinate dehydrogenase hydrophobic membrane anchor
subunit SDHD [Mycobacterium canettii CIPT 140010059]
gi|340006491|emb|CCC45674.1| putative succinate dehydrogenase (hydrophobic membrane anchor
subunit) SDHD (succinic dehydrogenase) (fumarate reductase)
(fumarate dehydrogenase) (fumaric hydrogenase) [Mycobacterium
canettii CIPT 140010059]
Length=144
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/144 (99%), Positives = 143/144 (99%), Gaps = 0/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGH+FIMLMW
Sbjct 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHLFIMLMW 60
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRK TTRFWLNSL
Sbjct 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKGTTRFWLNSL 120
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
LVLSMLFTLMLGTYVIVTFDPNIS
Sbjct 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
>gi|306782370|ref|ZP_07420707.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu002]
gi|306795081|ref|ZP_07433383.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu005]
gi|308325119|gb|EFP13970.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu002]
gi|308336656|gb|EFP25507.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu005]
Length=144
Score = 286 bits (733), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 142/144 (99%), Positives = 143/144 (99%), Gaps = 0/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGH+FIMLMW
Sbjct 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHLFIMLMW 60
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
DNGVYRLDFNFVAQRWASPFWQT DLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL
Sbjct 61 DNGVYRLDFNFVAQRWASPFWQTRDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
LVLSMLFTLMLGTYVIVTFDPNIS
Sbjct 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
>gi|308371309|ref|ZP_07667132.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu003]
gi|308374840|ref|ZP_07667875.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu006]
gi|308376070|ref|ZP_07668182.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu007]
gi|308377301|ref|ZP_07668477.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu008]
gi|308329340|gb|EFP18191.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu003]
gi|308340691|gb|EFP29542.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu006]
gi|308344425|gb|EFP33276.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu007]
gi|308348429|gb|EFP37280.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu008]
Length=149
Score = 286 bits (733), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 142/144 (99%), Positives = 143/144 (99%), Gaps = 0/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGH+FIMLMW
Sbjct 6 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHLFIMLMW 65
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
DNGVYRLDFNFVAQRWASPFWQT DLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL
Sbjct 66 DNGVYRLDFNFVAQRWASPFWQTRDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 125
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
LVLSMLFTLMLGTYVIVTFDPNIS
Sbjct 126 LVLSMLFTLMLGTYVIVTFDPNIS 149
>gi|308372499|ref|ZP_07667393.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu004]
gi|308378270|ref|ZP_07668702.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu009]
gi|308333171|gb|EFP22022.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu004]
gi|308353052|gb|EFP41903.1| succinate dehydrogenase hydrophobic membrane anchor subunit sdhD
[Mycobacterium tuberculosis SUMu009]
Length=171
Score = 286 bits (732), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 142/144 (99%), Positives = 143/144 (99%), Gaps = 0/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGH+FIMLMW
Sbjct 28 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHLFIMLMW 87
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
DNGVYRLDFNFVAQRWASPFWQT DLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL
Sbjct 88 DNGVYRLDFNFVAQRWASPFWQTRDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 147
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
LVLSMLFTLMLGTYVIVTFDPNIS
Sbjct 148 LVLSMLFTLMLGTYVIVTFDPNIS 171
>gi|296168860|ref|ZP_06850532.1| succinate dehydrogenase cytochrome b small subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896477|gb|EFG76127.1| succinate dehydrogenase cytochrome b small subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length=156
Score = 263 bits (672), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 125/142 (89%), Positives = 136/142 (96%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APVRQRSHDRPASLDNPRSPRRRAG+PNFEKFAWLFMRFSGV L+ LA+GH+FIMLMWD+
Sbjct 14 APVRQRSHDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGVALIVLAVGHLFIMLMWDD 73
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VAQRWASPFWQ WDL LLWLAQLHGGNGLRTIIDDYSRKD+TRFWLNSLL+
Sbjct 74 GVYRIDFNYVAQRWASPFWQFWDLALLWLAQLHGGNGLRTIIDDYSRKDSTRFWLNSLLL 133
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LSM FTL+LGTYV+VTFDPNI
Sbjct 134 LSMGFTLVLGTYVLVTFDPNIG 155
>gi|254820241|ref|ZP_05225242.1| succinate dehydrogenase hydrophobic membrane anchor protein SdhD
[Mycobacterium intracellulare ATCC 13950]
Length=156
Score = 260 bits (664), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 123/142 (87%), Positives = 136/142 (96%), Gaps = 0/142 (0%)
Query 2 SAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWD 61
+APV+QRS+DRPASLDNPRSPRRRAG+PNFEKFAWLFMRFSG+ L LAIGH+FIMLMWD
Sbjct 13 TAPVKQRSYDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGIALFVLAIGHLFIMLMWD 72
Query 62 NGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLL 121
NGVYR+DFN+VAQRWASPFWQ WDL LLWLAQLHGGNGLRTIIDDYSRKD+TRFWLNSLL
Sbjct 73 NGVYRIDFNYVAQRWASPFWQFWDLALLWLAQLHGGNGLRTIIDDYSRKDSTRFWLNSLL 132
Query 122 VLSMLFTLMLGTYVIVTFDPNI 143
+LSM FTL+LGTYV++TFDPNI
Sbjct 133 LLSMGFTLVLGTYVLLTFDPNI 154
>gi|342861544|ref|ZP_08718191.1| succinate dehydrogenase hydrophobic membrane anchor protein [Mycobacterium
colombiense CECT 3035]
gi|342131033|gb|EGT84322.1| succinate dehydrogenase hydrophobic membrane anchor protein [Mycobacterium
colombiense CECT 3035]
Length=156
Score = 257 bits (656), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 122/142 (86%), Positives = 134/142 (95%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV+QR +DRPASLDNPRSPRRRAG+PNFEKFAWLFMRFSG+ L LAIGH+FIMLMWDN
Sbjct 14 APVKQRLYDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGIALFVLAIGHLFIMLMWDN 73
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VAQRWASPFWQ WDL LLWLAQLHGGNGLRTIIDDYSRKD+TRFWLNSLL+
Sbjct 74 GVYRIDFNYVAQRWASPFWQFWDLALLWLAQLHGGNGLRTIIDDYSRKDSTRFWLNSLLL 133
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LSM FTL+LGTYV++TFDPNI
Sbjct 134 LSMGFTLVLGTYVLLTFDPNIG 155
>gi|118464043|ref|YP_883436.1| succinate dehydrogenase hydrophobic membrane anchor protein SdhD
[Mycobacterium avium 104]
gi|254776731|ref|ZP_05218247.1| succinate dehydrogenase hydrophobic membrane anchor protein SdhD
[Mycobacterium avium subsp. avium ATCC 25291]
gi|118165330|gb|ABK66227.1| succinate dehydrogenase hydrophobic membrane anchor protein SdhD
[Mycobacterium avium 104]
Length=156
Score = 256 bits (655), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 123/142 (87%), Positives = 135/142 (96%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV+QR +DRPASLDNPRSPRRRAG+PNFEKFAWLFMRFSGV L LAIGH+FIMLMWD+
Sbjct 14 APVKQRFYDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGVALFVLAIGHLFIMLMWDD 73
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VAQRWASPFWQ WDL LLWLAQLHGGNGLRTIIDDYSRKD+TRFWLNSLL+
Sbjct 74 GVYRIDFNYVAQRWASPFWQFWDLALLWLAQLHGGNGLRTIIDDYSRKDSTRFWLNSLLL 133
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LSM FTL+LGTYV++TFDPNIS
Sbjct 134 LSMGFTLVLGTYVLLTFDPNIS 155
>gi|15827294|ref|NP_301557.1| succinate dehydrogenase hydrophobic membrane anchor protei [Mycobacterium
leprae TN]
gi|221229772|ref|YP_002503188.1| putative succinate dehydrogenase hydrophobic membrane anchor
protei [Mycobacterium leprae Br4923]
gi|467180|gb|AAA17338.1| L308_F1_25 [Mycobacterium leprae]
gi|13092843|emb|CAC30207.1| putative succinate dehydrogenase hydrophobic membrane anchor
protei [Mycobacterium leprae]
gi|219932879|emb|CAR70792.1| putative succinate dehydrogenase hydrophobic membrane anchor
protei [Mycobacterium leprae Br4923]
Length=163
Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/142 (86%), Positives = 134/142 (95%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APVRQRS+DRPASLDNPRSPRRRAG+PNFEKFAWLFMRFSGV LV LA GH+FIMLMWDN
Sbjct 22 APVRQRSYDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGVALVVLAFGHLFIMLMWDN 81
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFNFVAQRW+SPFW+ WDL LLWLAQ+HGGNGLR IIDDYSRKD TRFWLNSLL+
Sbjct 82 GVYRIDFNFVAQRWSSPFWRFWDLALLWLAQVHGGNGLRNIIDDYSRKDHTRFWLNSLLL 141
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LSM FTL+LG+YV+++FDPNIS
Sbjct 142 LSMGFTLVLGSYVLLSFDPNIS 163
>gi|169630753|ref|YP_001704402.1| succinate dehydrogenase, hydrophobic membrane anchor protein
SdhD [Mycobacterium abscessus ATCC 19977]
gi|169242720|emb|CAM63748.1| Probable succinate dehydrogenase, hydrophobic membrane anchor
protein SdhD [Mycobacterium abscessus]
Length=160
Score = 250 bits (638), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 113/142 (80%), Positives = 135/142 (96%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV +R++DRPA+LDNPR+PRR +GMPNFEK+AW+FMR SGVVL+FLA+GH+FIMLMWDN
Sbjct 19 APVLERNYDRPAALDNPRAPRRGSGMPNFEKYAWIFMRLSGVVLIFLALGHLFIMLMWDN 78
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYRLDFNFVAQRWASPFWQTWDLL+LWLAQLHGGNG+RTII DY+RKD+TRFWLN LL
Sbjct 79 GVYRLDFNFVAQRWASPFWQTWDLLMLWLAQLHGGNGMRTIIADYTRKDSTRFWLNCLLA 138
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LS++FT++LGTYV++TF+PNI
Sbjct 139 LSIIFTVVLGTYVLLTFNPNIG 160
>gi|183981224|ref|YP_001849515.1| succinate dehydrogenase (hydrophobic membrane anchor subunit)
SdhD [Mycobacterium marinum M]
gi|183174550|gb|ACC39660.1| succinate dehydrogenase (hydrophobic membrane anchor subunit)
SdhD [Mycobacterium marinum M]
Length=155
Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/142 (87%), Positives = 137/142 (97%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV QRSHDRPASLDNPRSPRRRAGMPNFEK+AWLFMRFSGVVLVFLA+GH+FI LMW+N
Sbjct 14 APVLQRSHDRPASLDNPRSPRRRAGMPNFEKYAWLFMRFSGVVLVFLALGHLFIGLMWEN 73
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VAQRW+SPFWQTWDLLLLWLAQLHGGNGLR IIDDYSRKD+TRFWLNSLLV
Sbjct 74 GVYRIDFNYVAQRWSSPFWQTWDLLLLWLAQLHGGNGLRVIIDDYSRKDSTRFWLNSLLV 133
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
+S++FTL LG+YV++TFD NIS
Sbjct 134 VSIVFTLALGSYVLLTFDANIS 155
>gi|240169115|ref|ZP_04747774.1| succinate dehydrogenase (hydrophobic membrane anchor subunit)
SdhD [Mycobacterium kansasii ATCC 12478]
Length=159
Score = 240 bits (613), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/142 (87%), Positives = 135/142 (96%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV QR+HDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLA+GH+FI LMWDN
Sbjct 18 APVLQRTHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLALGHLFIGLMWDN 77
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VAQRW SPFWQTWDLLLLWLAQLHGGNGLR IIDDYSRK++TRFWLNSLL
Sbjct 78 GVYRIDFNYVAQRWNSPFWQTWDLLLLWLAQLHGGNGLRVIIDDYSRKESTRFWLNSLLA 137
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
+SM FTL+LG+YV++TFD NIS
Sbjct 138 VSMTFTLVLGSYVLLTFDANIS 159
>gi|41409540|ref|NP_962376.1| SdhD [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41398371|gb|AAS05992.1| SdhD [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459592|gb|EGO38527.1| succinate dehydrogenase, hydrophobic anchor subunit [Mycobacterium
avium subsp. paratuberculosis S397]
Length=156
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/142 (87%), Positives = 135/142 (96%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV+QR +DRPASLDNPRSPRRRAG+PNFEKFAWLFMRFSGV L LAIGH+FIMLMWD+
Sbjct 14 APVKQRFYDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGVALFVLAIGHLFIMLMWDD 73
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VAQRWASPFWQ WDL LLWLAQLHGGNGLRTIIDDYSRKD+TRFWLNSLL+
Sbjct 74 GVYRIDFNYVAQRWASPFWQLWDLALLWLAQLHGGNGLRTIIDDYSRKDSTRFWLNSLLL 133
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LSM FTL+LGTYV++TFDPNIS
Sbjct 134 LSMGFTLVLGTYVLLTFDPNIS 155
>gi|118617053|ref|YP_905385.1| succinate dehydrogenase (hydrophobic membrane anchor subunit)
SdhD [Mycobacterium ulcerans Agy99]
gi|118569163|gb|ABL03914.1| succinate dehydrogenase (hydrophobic membrane anchor subunit)
SdhD [Mycobacterium ulcerans Agy99]
Length=140
Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/138 (87%), Positives = 133/138 (97%), Gaps = 0/138 (0%)
Query 7 QRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYR 66
QRSHDRPASLDNPRSPRRRA MPNFEK+AWLFMRFSGVVLVFLA+GH+FI LMW+NGVYR
Sbjct 3 QRSHDRPASLDNPRSPRRRASMPNFEKYAWLFMRFSGVVLVFLALGHLFIGLMWENGVYR 62
Query 67 LDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSML 126
+DFN+VAQRW+SPFWQTWDLLLLWLAQLHGGNGLR IIDDYSRKD+TRFWLNSLLV+S++
Sbjct 63 IDFNYVAQRWSSPFWQTWDLLLLWLAQLHGGNGLRVIIDDYSRKDSTRFWLNSLLVVSIV 122
Query 127 FTLMLGTYVIVTFDPNIS 144
FTL LG+YV++TFD NIS
Sbjct 123 FTLALGSYVLLTFDANIS 140
>gi|108798200|ref|YP_638397.1| succinate dehydrogenase subunit D [Mycobacterium sp. MCS]
gi|119867296|ref|YP_937248.1| succinate dehydrogenase subunit D [Mycobacterium sp. KMS]
gi|108768619|gb|ABG07341.1| succinate dehydrogenase subunit D [Mycobacterium sp. MCS]
gi|119693385|gb|ABL90458.1| succinate dehydrogenase subunit D [Mycobacterium sp. KMS]
Length=159
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/142 (84%), Positives = 133/142 (94%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV QRSHDRP SLDNPR+P+R GMPNFEK+AWLFMRFSG+VLVFLA+GH+FIMLMWDN
Sbjct 18 APVLQRSHDRPPSLDNPRAPKRAGGMPNFEKYAWLFMRFSGMVLVFLALGHLFIMLMWDN 77
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VAQRW+SPFWQTWDLLLLWLAQLHGGNGLR II DY+RKD+TRFWLNSLL
Sbjct 78 GVYRIDFNYVAQRWSSPFWQTWDLLLLWLAQLHGGNGLRVIISDYARKDSTRFWLNSLLA 137
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LSM+F L+LGTYV++TFD NIS
Sbjct 138 LSMIFILVLGTYVLLTFDANIS 159
>gi|120402594|ref|YP_952423.1| putative succinate dehydrogenase [Mycobacterium vanbaalenii PYR-1]
gi|119955412|gb|ABM12417.1| succinate dehydrogenase subunit D [Mycobacterium vanbaalenii
PYR-1]
Length=163
Score = 233 bits (595), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 116/142 (82%), Positives = 133/142 (94%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV QRS+DRPA LDNPRSPRR GMPNFEK+AWLFMRFSG+VLVFLA+GH+FIMLMW+N
Sbjct 22 APVMQRSYDRPAGLDNPRSPRRAGGMPNFEKYAWLFMRFSGIVLVFLALGHLFIMLMWEN 81
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VA+RW+SPFWQTWDLLLLWLAQLHGGNG+RTII DYSRKD+T+FWLN+LL
Sbjct 82 GVYRIDFNYVAERWSSPFWQTWDLLLLWLAQLHGGNGMRTIIADYSRKDSTKFWLNTLLA 141
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LSM FTL+LGTYV++TFD IS
Sbjct 142 LSMAFTLVLGTYVLLTFDATIS 163
>gi|126433857|ref|YP_001069548.1| succinate dehydrogenase subunit D [Mycobacterium sp. JLS]
gi|126233657|gb|ABN97057.1| succinate dehydrogenase subunit D [Mycobacterium sp. JLS]
Length=159
Score = 233 bits (593), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 117/142 (83%), Positives = 132/142 (93%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV QRSHDRP SLDNPR+P+R GMPNFEK+AWLFMRFSG+ LVFLA+GH+FIMLMWDN
Sbjct 18 APVLQRSHDRPPSLDNPRAPKRAGGMPNFEKYAWLFMRFSGMALVFLALGHLFIMLMWDN 77
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VAQRW+SPFWQTWDLLLLWLAQLHGGNGLR II DY+RKD+TRFWLNSLL
Sbjct 78 GVYRIDFNYVAQRWSSPFWQTWDLLLLWLAQLHGGNGLRVIISDYARKDSTRFWLNSLLA 137
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LSM+F L+LGTYV++TFD NIS
Sbjct 138 LSMIFILVLGTYVLLTFDANIS 159
>gi|145225423|ref|YP_001136101.1| putative succinate dehydrogenase [Mycobacterium gilvum PYR-GCK]
gi|145217909|gb|ABP47313.1| succinate dehydrogenase subunit D [Mycobacterium gilvum PYR-GCK]
Length=167
Score = 230 bits (586), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/142 (81%), Positives = 132/142 (93%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV QRS DRPA LDNPR+PRR GMPNFEK+ WLFMRFSG+VLVFLA+GH+FIMLMW+N
Sbjct 26 APVMQRSFDRPAGLDNPRAPRRSGGMPNFEKYTWLFMRFSGIVLVFLALGHLFIMLMWEN 85
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VAQRW+SPFWQTWDLLLLWLAQLHGGNG+RTII DY+RKD+T+FWLN+LL
Sbjct 86 GVYRIDFNYVAQRWSSPFWQTWDLLLLWLAQLHGGNGMRTIIADYTRKDSTKFWLNTLLA 145
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LSM FTL+LGTYV++TFD +IS
Sbjct 146 LSMAFTLVLGTYVLLTFDASIS 167
>gi|315445771|ref|YP_004078650.1| succinate dehydrogenase subunit D [Mycobacterium sp. Spyr1]
gi|315264074|gb|ADU00816.1| succinate dehydrogenase subunit D [Mycobacterium sp. Spyr1]
Length=167
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/142 (80%), Positives = 132/142 (93%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV QRS DRPA LDNPR+PRR GMPNFEK+ WLFMRFSG+VLVFLA+GH+FIMLMW++
Sbjct 26 APVMQRSFDRPAGLDNPRAPRRSGGMPNFEKYTWLFMRFSGIVLVFLALGHLFIMLMWES 85
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VAQRW+SPFWQTWDLLLLWLAQLHGGNG+RTII DY+RKD+T+FWLN+LL
Sbjct 86 GVYRIDFNYVAQRWSSPFWQTWDLLLLWLAQLHGGNGMRTIIADYTRKDSTKFWLNTLLA 145
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
LSM FTL+LGTYV++TFD +IS
Sbjct 146 LSMAFTLVLGTYVLLTFDASIS 167
>gi|118473638|ref|YP_886047.1| succinate dehydrogenase hydrophobic membrane anchor protein SdhD
[Mycobacterium smegmatis str. MC2 155]
gi|118174925|gb|ABK75821.1| succinate dehydrogenase hydrophobic membrane anchor protein SdhD
[Mycobacterium smegmatis str. MC2 155]
Length=156
Score = 226 bits (576), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 101/142 (72%), Positives = 126/142 (89%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV +R HDRPA+LD+PR+PR+ G+P FEK+AWLFMRFSG+ LVFLA+GH+FIMLMW +
Sbjct 15 APVMEREHDRPAALDHPRAPRKPRGIPYFEKYAWLFMRFSGIALVFLALGHLFIMLMWQD 74
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFN+VA+RWASPFWQ WD+ LLWLA +HG NG+RTII DY+RK+ T+FWLNSLL+
Sbjct 75 GVYRIDFNYVAERWASPFWQIWDMALLWLAMIHGANGMRTIIGDYARKNVTKFWLNSLLL 134
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
L+ FTL+LG+YV+VTFD NIS
Sbjct 135 LATGFTLVLGSYVLVTFDANIS 156
>gi|333991784|ref|YP_004524398.1| succinate dehydrogenase (hydrophobic membrane anchor subunit)
SdhD [Mycobacterium sp. JDM601]
gi|333487752|gb|AEF37144.1| succinate dehydrogenase (hydrophobic membrane anchor subunit)
SdhD [Mycobacterium sp. JDM601]
Length=155
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/142 (72%), Positives = 120/142 (85%), Gaps = 0/142 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APVR DRPASL +PR+P R GM NFEK+ WLFMRFSG VL+FL +GH+FIMLMWD+
Sbjct 14 APVRGPDRDRPASLGDPRAPFRHKGMANFEKYTWLFMRFSGAVLIFLVLGHLFIMLMWDD 73
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GVYR+DFNFVA+RW SPFWQ WDL LLWLAQLHGGNG+RTII DY+R +RFWL SLL
Sbjct 74 GVYRIDFNFVAERWRSPFWQIWDLSLLWLAQLHGGNGMRTIISDYTRSGRSRFWLLSLLA 133
Query 123 LSMLFTLMLGTYVIVTFDPNIS 144
+SM+FTL LG+YV+++FDPNIS
Sbjct 134 VSMVFTLALGSYVLLSFDPNIS 155
>gi|343926655|ref|ZP_08766153.1| succinate dehydrogenase hydrophobic membrane anchor protein [Gordonia
alkanivorans NBRC 16433]
gi|343763407|dbj|GAA13079.1| succinate dehydrogenase hydrophobic membrane anchor protein [Gordonia
alkanivorans NBRC 16433]
Length=151
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 116/140 (83%), Gaps = 1/140 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
A + HDRPASLDNPRSPR+ G NFEK AW+FMRFSG++LVFL IGH+FIML WD
Sbjct 10 AKTLGKEHDRPASLDNPRSPRKPKG-GNFEKNAWMFMRFSGLILVFLTIGHMFIMLAWDG 68
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GV+R+D +FVA RW+SP WQ WDL +LWLAQLHGGNG+RT+I DYSRKD+TRFWLN LL
Sbjct 69 GVHRIDASFVAARWSSPGWQIWDLTMLWLAQLHGGNGVRTVIADYSRKDSTRFWLNVLLA 128
Query 123 LSMLFTLMLGTYVIVTFDPN 142
+SM+ TL+LGTY I+TFD N
Sbjct 129 VSMILTLVLGTYAILTFDVN 148
>gi|111023210|ref|YP_706182.1| succinate dehydrogenase hydrophobic membrane anchor protein [Rhodococcus
jostii RHA1]
gi|226365715|ref|YP_002783498.1| succinate dehydrogenase hydrophobic membrane anchor protein [Rhodococcus
opacus B4]
gi|110822740|gb|ABG98024.1| probable succinate dehydrogenase hydrophobic membrane anchor
protein [Rhodococcus jostii RHA1]
gi|226244205|dbj|BAH54553.1| succinate dehydrogenase hydrophobic membrane anchor protein [Rhodococcus
opacus B4]
Length=147
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/143 (70%), Positives = 120/143 (84%), Gaps = 1/143 (0%)
Query 2 SAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWD 61
A +++DRPASLDNPRSPRR + NFE +AWLFMRFSG+ L+FL +GH+FIMLM D
Sbjct 4 EAKSLGKTYDRPASLDNPRSPRRTSK-NNFELYAWLFMRFSGLALIFLVLGHLFIMLMLD 62
Query 62 NGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLL 121
+GV+R++F FVA RW+SPFWQ WDL +LWLAQLHGGNGLRT+I DYSRKD+TRFWL ++L
Sbjct 63 DGVHRINFAFVAGRWSSPFWQFWDLTMLWLAQLHGGNGLRTVIADYSRKDSTRFWLTTIL 122
Query 122 VLSMLFTLMLGTYVIVTFDPNIS 144
VLSM+ + LGTYVI TFDPNIS
Sbjct 123 VLSMILIMGLGTYVIFTFDPNIS 145
>gi|226305531|ref|YP_002765491.1| succinate dehydrogenase hydrophobic membrane anchor protein [Rhodococcus
erythropolis PR4]
gi|229489342|ref|ZP_04383205.1| succinate dehydrogenase hydrophobic membrane anchor protein SdhD
[Rhodococcus erythropolis SK121]
gi|226184648|dbj|BAH32752.1| putative succinate dehydrogenase hydrophobic membrane anchor
protein [Rhodococcus erythropolis PR4]
gi|229323439|gb|EEN89197.1| succinate dehydrogenase hydrophobic membrane anchor protein SdhD
[Rhodococcus erythropolis SK121]
Length=151
Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/136 (74%), Positives = 116/136 (86%), Gaps = 1/136 (0%)
Query 9 SHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYRLD 68
S+DRPASLDNPRSPR +A NFE +AWLFMRFSGV L+ L +GH+FIMLM D GV+RL+
Sbjct 15 SYDRPASLDNPRSPRAKA-RNNFELYAWLFMRFSGVALIVLVLGHMFIMLMLDGGVHRLN 73
Query 69 FNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSMLFT 128
F FVA RW+SPFWQ WDL +LWLAQLHGGNGLRT+I DYSRKD+TRFWL ++LVLSM+
Sbjct 74 FAFVAGRWSSPFWQFWDLTMLWLAQLHGGNGLRTVIADYSRKDSTRFWLTTILVLSMILI 133
Query 129 LMLGTYVIVTFDPNIS 144
+ LGTYVI TFDPNIS
Sbjct 134 MGLGTYVIFTFDPNIS 149
>gi|312140770|ref|YP_004008106.1| succinate dehydrogenase membrane subunit sdhd2 [Rhodococcus equi
103S]
gi|325675590|ref|ZP_08155274.1| succinate dehydrogenase cytochrome b small subunit [Rhodococcus
equi ATCC 33707]
gi|311890109|emb|CBH49427.1| succinate dehydrogenase membrane subunit SdhD2 [Rhodococcus equi
103S]
gi|325553561|gb|EGD23239.1| succinate dehydrogenase cytochrome b small subunit [Rhodococcus
equi ATCC 33707]
Length=147
Score = 206 bits (525), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/137 (71%), Positives = 119/137 (87%), Gaps = 1/137 (0%)
Query 8 RSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYRL 67
+++DRPASLDNPRSPR+ A NFE +AWLFMRFSG+ L+ L +GH+FIMLM D+GV+R+
Sbjct 10 KAYDRPASLDNPRSPRKPAK-NNFELYAWLFMRFSGLALIILVLGHLFIMLMLDDGVHRI 68
Query 68 DFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSMLF 127
+F FVA RW+SPFWQ WDL +LWLAQLHGGNGLRT+I DYSRKD+TRFWLN++LV+SM+
Sbjct 69 NFAFVAGRWSSPFWQFWDLTMLWLAQLHGGNGLRTVIADYSRKDSTRFWLNTILVVSMIL 128
Query 128 TLMLGTYVIVTFDPNIS 144
+ LGTYVI TFDPNIS
Sbjct 129 IMGLGTYVIFTFDPNIS 145
>gi|54022915|ref|YP_117157.1| putative succinate dehydrogenase membrane subunit [Nocardia farcinica
IFM 10152]
gi|54014423|dbj|BAD55793.1| putative succinate dehydrogenase membrane subunit [Nocardia farcinica
IFM 10152]
Length=143
Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/144 (73%), Positives = 123/144 (86%), Gaps = 1/144 (0%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMW 60
M+APV +S+DRPASLD PR+PR RAG NFEK+AWLFMRFSG++L+ L +GH+FIMLM
Sbjct 1 MTAPVLGKSYDRPASLDLPRAPRGRAG-NNFEKYAWLFMRFSGLLLIVLVLGHMFIMLMI 59
Query 61 DNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSL 120
D GV RL+F FVA RWASPFWQ WDL +LWLAQLHGGNGLRT+IDDYSRKD+TRFWL +L
Sbjct 60 DGGVQRLNFAFVAGRWASPFWQIWDLTMLWLAQLHGGNGLRTVIDDYSRKDSTRFWLKTL 119
Query 121 LVLSMLFTLMLGTYVIVTFDPNIS 144
L +SM+ + +GTYVI TFDPNIS
Sbjct 120 LAVSMILIMGVGTYVIFTFDPNIS 143
>gi|326381947|ref|ZP_08203640.1| succinate dehydrogenase hydrophobic membrane anchor protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326199373|gb|EGD56554.1| succinate dehydrogenase hydrophobic membrane anchor protein [Gordonia
neofelifaecis NRRL B-59395]
Length=143
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 91/138 (66%), Positives = 111/138 (81%), Gaps = 1/138 (0%)
Query 2 SAPVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWD 61
A ++DRPASLD P +PR R+ NFEK AW+FMRFSG+ L+ L GH+FIMLMWD
Sbjct 3 EAKTLGTAYDRPASLDAPNAPRIRS-RGNFEKNAWMFMRFSGLALIVLTFGHMFIMLMWD 61
Query 62 NGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLL 121
+GV+R+D +FVA RW SPFWQ WDL +LWLAQLHGGNG+RT+I DYSRKD+TRFWLN+LL
Sbjct 62 SGVHRIDASFVADRWKSPFWQVWDLTMLWLAQLHGGNGVRTVIADYSRKDSTRFWLNTLL 121
Query 122 VLSMLFTLMLGTYVIVTF 139
LSM+ L+LGTY I+TF
Sbjct 122 ALSMILILVLGTYAILTF 139
>gi|296138695|ref|YP_003645938.1| succinate dehydrogenase cytochrome b subunit [Tsukamurella paurometabola
DSM 20162]
gi|296026829|gb|ADG77599.1| succinate dehydrogenase cytochrome b subunit [Tsukamurella paurometabola
DSM 20162]
Length=155
Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 91/135 (68%), Positives = 111/135 (83%), Gaps = 2/135 (1%)
Query 8 RSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWD-NGVYR 66
+ +DRPASLDNPRSP R G NFEK+AWLFMRFSG+ L+ L GHVFIML D +GV+R
Sbjct 15 KQYDRPASLDNPRSPHRPTG-GNFEKYAWLFMRFSGIALLVLVFGHVFIMLALDSDGVHR 73
Query 67 LDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSML 126
++ FVAQRWASPFWQ WD+ +LWLAQLHGGNGLR IIDDY++KD TRFWL +LLVLSM+
Sbjct 74 INAAFVAQRWASPFWQIWDITMLWLAQLHGGNGLRVIIDDYAKKDRTRFWLKALLVLSMI 133
Query 127 FTLMLGTYVIVTFDP 141
+ LG+Y ++TF+P
Sbjct 134 LVVGLGSYALLTFEP 148
>gi|262201720|ref|YP_003272928.1| succinate dehydrogenase hydrophobic anchor subunit-like protein
[Gordonia bronchialis DSM 43247]
gi|262085067|gb|ACY21035.1| Succinate dehydrogenase hydrophobic anchor subunit-like protein
[Gordonia bronchialis DSM 43247]
Length=153
Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/131 (69%), Positives = 109/131 (84%), Gaps = 2/131 (1%)
Query 10 HDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN-GVYRLD 68
+DRPASLDNPRSPR+ G NFEK AW+FMRFSG+ L+ L IGH+FIML WD+ GV+R+D
Sbjct 18 YDRPASLDNPRSPRKSKG-GNFEKNAWMFMRFSGLALIILTIGHMFIMLAWDSQGVHRID 76
Query 69 FNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSMLFT 128
FV +RW+SPFWQ WDL +LWLAQLHGGNG+RT+I DYSRKD+TRFWLN LL +SM+
Sbjct 77 AAFVLERWSSPFWQIWDLSMLWLAQLHGGNGVRTVIADYSRKDSTRFWLNVLLGVSMILI 136
Query 129 LMLGTYVIVTF 139
L+LGTY I+T
Sbjct 137 LVLGTYAILTI 147
>gi|319949457|ref|ZP_08023517.1| succinate dehydrogenase hydrophobic membrane anchor protein [Dietzia
cinnamea P4]
gi|319436883|gb|EFV91943.1| succinate dehydrogenase hydrophobic membrane anchor protein [Dietzia
cinnamea P4]
Length=143
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/134 (64%), Positives = 107/134 (80%), Gaps = 1/134 (0%)
Query 3 APVRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
APV Q S+DRPASL PRSPR R+ NFE+ AW+FMR+SGV LV L +GH+ + LM D
Sbjct 4 APVLQTSYDRPASLAQPRSPRLRSRF-NFERTAWIFMRYSGVALVILTLGHLTVGLMIDE 62
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GV+R+D+ +VA RW SPFW WD+L+LWLA LHG NG+RTII DYSRKD+TRFWLNS+L+
Sbjct 63 GVHRIDWAYVADRWQSPFWAIWDILMLWLAMLHGANGVRTIIADYSRKDSTRFWLNSILL 122
Query 123 LSMLFTLMLGTYVI 136
++ + TL+LGTY I
Sbjct 123 VATVLTLVLGTYAI 136
>gi|300782782|ref|YP_003763073.1| succinate dehydrogenase hydrophobic membrane anchor protein [Amycolatopsis
mediterranei U32]
gi|299792296|gb|ADJ42671.1| succinate dehydrogenase hydrophobic membrane anchor protein [Amycolatopsis
mediterranei U32]
gi|340524156|gb|AEK39361.1| succinate dehydrogenase hydrophobic membrane anchor protein [Amycolatopsis
mediterranei S699]
Length=137
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/130 (64%), Positives = 105/130 (81%), Gaps = 1/130 (0%)
Query 15 SLDNPRSPRRRAGM-PNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYRLDFNFVA 73
+L NPR+P+R A NFE ++WLFMR SG+VLV L +GH+ IM + D GV+R+++ FVA
Sbjct 5 ALANPRAPKRPAARRSNFELYSWLFMRISGLVLVILVLGHLLIMNILDGGVHRINWGFVA 64
Query 74 QRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSMLFTLMLGT 133
RWASPFWQ WDLL+LWLA++HGGNGLRTIIDDY+RKD+TRFWL LL +SM+ L +GT
Sbjct 65 GRWASPFWQFWDLLMLWLAEIHGGNGLRTIIDDYARKDSTRFWLKILLYVSMVLILAVGT 124
Query 134 YVIVTFDPNI 143
VI TFDPN+
Sbjct 125 MVIFTFDPNM 134
>gi|320008970|gb|ADW03820.1| succinate dehydrogenase cytochrome b subunit [Streptomyces flavogriseus
ATCC 33331]
Length=159
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/139 (59%), Positives = 99/139 (72%), Gaps = 8/139 (5%)
Query 11 DRPASLDNPRSPRRRAGMP------NFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGV 64
D PA + P PR+R G NFE +AWLFMR SG+VLV L IGH+ I L+ D GV
Sbjct 22 DNPAPVIEP--PRKRTGKTPKGSRTNFEMYAWLFMRLSGIVLVVLVIGHLLIQLVLDGGV 79
Query 65 YRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLS 124
++ F FVA RWASPFWQ WDL +LWLA LHG NGLRT+I+DY+ +D TRFWL LL +
Sbjct 80 SKIGFAFVAGRWASPFWQVWDLAMLWLAMLHGANGLRTVINDYAERDNTRFWLKMLLYTA 139
Query 125 MLFTLMLGTYVIVTFDPNI 143
+FT++LGT VI TFDPNI
Sbjct 140 TVFTVLLGTLVIFTFDPNI 158
>gi|239990193|ref|ZP_04710857.1| putative succinate dehydrogenase membrane subunit [Streptomyces
roseosporus NRRL 11379]
gi|291447201|ref|ZP_06586591.1| succinate dehydrogenase hydrophobic membrane anchor protein [Streptomyces
roseosporus NRRL 15998]
gi|291350148|gb|EFE77052.1| succinate dehydrogenase hydrophobic membrane anchor protein [Streptomyces
roseosporus NRRL 15998]
Length=160
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/139 (59%), Positives = 100/139 (72%), Gaps = 8/139 (5%)
Query 11 DRPASLDNPRSPRRR------AGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGV 64
D PA + P PR+R A NFE +AWLFMR SG++L L IGH+ I L+ D GV
Sbjct 23 DNPAPVIEP--PRKRTAKTPKASRGNFEMYAWLFMRLSGILLTVLVIGHLLIQLVLDGGV 80
Query 65 YRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLS 124
++ F FVA RWASPFWQ WDL++LWLA LHGGNGLRT+I+DY+ +D TRFWL LL +
Sbjct 81 SKIGFAFVAGRWASPFWQAWDLIMLWLAMLHGGNGLRTVINDYAERDNTRFWLKMLLYTA 140
Query 125 MLFTLMLGTYVIVTFDPNI 143
+FT++LGT VI TFDPNI
Sbjct 141 TVFTVLLGTLVIFTFDPNI 159
>gi|182436481|ref|YP_001824200.1| putative succinate dehydrogenase membrane subunit [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326777102|ref|ZP_08236367.1| putative succinate dehydrogenase membrane subunit [Streptomyces
cf. griseus XylebKG-1]
gi|178464997|dbj|BAG19517.1| putative succinate dehydrogenase membrane subunit [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326657435|gb|EGE42281.1| putative succinate dehydrogenase membrane subunit [Streptomyces
griseus XylebKG-1]
Length=160
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/139 (59%), Positives = 99/139 (72%), Gaps = 8/139 (5%)
Query 11 DRPASLDNPRSPRRR------AGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGV 64
D PA + P PR+R A NFE +AWLFMR SG++L L IGH+ I L+ D GV
Sbjct 23 DHPAPVIEP--PRKRTAKTPKASRGNFEMYAWLFMRLSGILLTVLVIGHLLIQLVLDGGV 80
Query 65 YRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLS 124
++ F FVA RWASPFWQ WDL +LWLA LHGGNGLRT+I+DY+ +D TRFWL LL +
Sbjct 81 SKIGFAFVAGRWASPFWQVWDLTMLWLAMLHGGNGLRTVINDYAERDNTRFWLKMLLYTA 140
Query 125 MLFTLMLGTYVIVTFDPNI 143
+FT++LGT VI TFDPNI
Sbjct 141 TVFTVLLGTLVIFTFDPNI 159
>gi|345001629|ref|YP_004804483.1| putative succinate dehydrogenase membrane subunit [Streptomyces
sp. SirexAA-E]
gi|344317255|gb|AEN11943.1| putative succinate dehydrogenase membrane subunit [Streptomyces
sp. SirexAA-E]
Length=160
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/139 (59%), Positives = 98/139 (71%), Gaps = 8/139 (5%)
Query 11 DRPASLDNPRSPRRR------AGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGV 64
D PA + P PR+R NFE +AWLFMR SG+VLV L IGH+ I L+ D GV
Sbjct 23 DHPAPVIEP--PRKRTDKTPKGSRTNFEMYAWLFMRLSGIVLVVLVIGHLLIQLVLDGGV 80
Query 65 YRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLS 124
++ F FVA RWASPFWQ WDL +LWLA LHG NGLRT+I+DY+ +D TRFWL LL +
Sbjct 81 SKIGFAFVAGRWASPFWQVWDLAMLWLAMLHGANGLRTVINDYAERDNTRFWLKMLLYTA 140
Query 125 MLFTLMLGTYVIVTFDPNI 143
+FT++LGT VI TFDPNI
Sbjct 141 TVFTVLLGTLVIFTFDPNI 159
>gi|256380450|ref|YP_003104110.1| Succinate dehydrogenase hydrophobic anchor subunit-like protein
[Actinosynnema mirum DSM 43827]
gi|255924753|gb|ACU40264.1| Succinate dehydrogenase hydrophobic anchor subunit-like protein
[Actinosynnema mirum DSM 43827]
Length=138
Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/115 (65%), Positives = 94/115 (82%), Gaps = 0/115 (0%)
Query 30 NFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYRLDFNFVAQRWASPFWQTWDLLLL 89
NFE ++WLFMR SGV L+ L +GH+FIM + D GV+R++F FVA RWASPFWQ WDL +L
Sbjct 21 NFELYSWLFMRLSGVALLVLVLGHLFIMNILDGGVHRINFGFVAGRWASPFWQIWDLAML 80
Query 90 WLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSMLFTLMLGTYVIVTFDPNIS 144
WLAQ+HGGNGLRT+I+DY+RKD TRFWL LL +SM+ ++ GTYV+ TFDP I+
Sbjct 81 WLAQIHGGNGLRTVINDYARKDATRFWLKMLLYVSMVLIIVTGTYVVFTFDPGIA 135
>gi|254385209|ref|ZP_05000541.1| succinate dehydrogenase membrane subunit [Streptomyces sp. Mg1]
gi|194344086|gb|EDX25052.1| succinate dehydrogenase membrane subunit [Streptomyces sp. Mg1]
Length=165
Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 80/137 (59%), Positives = 96/137 (71%), Gaps = 10/137 (7%)
Query 17 DNP----RSPRRRAGMP------NFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYR 66
DNP +PR+R G NFE AWLFMR SG+VLV L IGH+ I L+ D GV +
Sbjct 28 DNPAPYIEAPRKRTGKTPRSTRGNFEMVAWLFMRLSGIVLVVLVIGHLLIQLVLDGGVSK 87
Query 67 LDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSML 126
+ F FVA RWASPFWQ WDLL+LWLA LHG NGLRT+I+DY+ + TR WL LL + +
Sbjct 88 IGFAFVAGRWASPFWQVWDLLMLWLAMLHGSNGLRTVINDYAERANTRLWLKGLLYTATV 147
Query 127 FTLMLGTYVIVTFDPNI 143
FT++LGT VI TFDPNI
Sbjct 148 FTILLGTLVIFTFDPNI 164
>gi|336177047|ref|YP_004582422.1| succinate dehydrogenase hydrophobic membrane anchor protein [Frankia
symbiont of Datisca glomerata]
gi|334858027|gb|AEH08501.1| succinate dehydrogenase hydrophobic membrane anchor protein [Frankia
symbiont of Datisca glomerata]
Length=145
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/134 (59%), Positives = 100/134 (75%), Gaps = 4/134 (2%)
Query 15 SLDNPRSPRRR----AGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYRLDFN 70
+++ PRSP+RR NFE +AWLFMR SG++LVFL +GH+FIM + D GV R+ F
Sbjct 12 AIEAPRSPQRRPVRTKARTNFELYAWLFMRVSGILLVFLVLGHLFIMNILDGGVQRIGFG 71
Query 71 FVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSMLFTLM 130
FVA RWASPFW+TWDLL+L LA+LHG NGLRT+I+DY+ + TRFWL LL +S +
Sbjct 72 FVAGRWASPFWRTWDLLMLVLAELHGTNGLRTVINDYAERPQTRFWLKMLLYVSAFLVIS 131
Query 131 LGTYVIVTFDPNIS 144
LG+ VI TFDPNIS
Sbjct 132 LGSLVIFTFDPNIS 145
>gi|152967896|ref|YP_001363680.1| succinate dehydrogenase hydrophobic anchor subunit-like [Kineococcus
radiotolerans SRS30216]
gi|151362413|gb|ABS05416.1| Succinate dehydrogenase hydrophobic anchor subunit-like [Kineococcus
radiotolerans SRS30216]
Length=169
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/143 (54%), Positives = 103/143 (73%), Gaps = 2/143 (1%)
Query 1 MSAPVRQRSHDRPASLDNPRSPRRR--AGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIML 58
MSAP + +L+ PRSP RR A N+E + WLFMR SGVVL+ L GH+F+ L
Sbjct 1 MSAPEQTPGGSYAPALETPRSPYRRSKATRTNWEMYGWLFMRMSGVVLIVLVFGHLFVNL 60
Query 59 MWDNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLN 118
M +G++++D+ FVA +W+SPFWQ WDLL+LWLAQLHG NG+RT+I+DY+ +D TRFWL
Sbjct 61 MTGDGIHQVDWGFVAGKWSSPFWQVWDLLMLWLAQLHGTNGVRTVINDYAERDVTRFWLK 120
Query 119 SLLVLSMLFTLMLGTYVIVTFDP 141
L L+ + L++GT VI TFDP
Sbjct 121 MALYLATVIVLVVGTLVIFTFDP 143
>gi|302536397|ref|ZP_07288739.1| succinate dehydrogenase membrane subunit [Streptomyces sp. C]
gi|302445292|gb|EFL17108.1| succinate dehydrogenase membrane subunit [Streptomyces sp. C]
Length=160
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/137 (59%), Positives = 96/137 (71%), Gaps = 10/137 (7%)
Query 17 DNP----RSPRRRAGMP------NFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYR 66
DNP +PR+R G NFE AWLFMR SG+VLV L IGH+ I L+ D GV +
Sbjct 23 DNPAPYIEAPRKRTGKTPRSTRGNFEMAAWLFMRLSGIVLVVLVIGHLVIQLVLDGGVSK 82
Query 67 LDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSML 126
+ F FVA RWASPFWQ WDLL+LWLA LHG NGLRT+I+DY+ + TR WL LL + +
Sbjct 83 IGFAFVAGRWASPFWQVWDLLMLWLAMLHGSNGLRTVINDYAERANTRLWLKGLLYTATV 142
Query 127 FTLMLGTYVIVTFDPNI 143
FT++LGT VI TFDPNI
Sbjct 143 FTILLGTLVIFTFDPNI 159
>gi|333921573|ref|YP_004495154.1| succinate dehydrogenase hydrophobic membrane anchor protein [Amycolicicoccus
subflavus DQS3-9A1]
gi|333483794|gb|AEF42354.1| Succinate dehydrogenase hydrophobic membrane anchor protein [Amycolicicoccus
subflavus DQS3-9A1]
Length=113
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/110 (69%), Positives = 96/110 (88%), Gaps = 0/110 (0%)
Query 35 AWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQL 94
+WLFMR SG++L+FL IGH+ IML+ D+GV+R++F FVA RWASPFWQ WDL +LWLAQL
Sbjct 3 SWLFMRISGLLLMFLVIGHISIMLLLDDGVHRINFAFVAGRWASPFWQIWDLSMLWLAQL 62
Query 95 HGGNGLRTIIDDYSRKDTTRFWLNSLLVLSMLFTLMLGTYVIVTFDPNIS 144
HGGNGLRT+I+DY+RKD+TRFWL +LLV+S++ LG+YVI TFDPNI+
Sbjct 63 HGGNGLRTVINDYARKDSTRFWLTTLLVISIVLITGLGSYVIFTFDPNIT 112
>gi|284029309|ref|YP_003379240.1| Succinate dehydrogenase hydrophobic anchor subunit-like protein
[Kribbella flavida DSM 17836]
gi|283808602|gb|ADB30441.1| Succinate dehydrogenase hydrophobic anchor subunit-like protein
[Kribbella flavida DSM 17836]
Length=153
Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/145 (56%), Positives = 100/145 (69%), Gaps = 4/145 (2%)
Query 1 MSAP--VRQRSHDRPASLDNPRSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIML 58
MS P + RS R SL R R+G NFE + WLFMR SG+ LV L +GH+F+ L
Sbjct 1 MSTPEIAQPRSSSRARSLKG--GGRNRSGQTNFELYGWLFMRLSGLALVVLVLGHLFVNL 58
Query 59 MWDNGVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLN 118
M +G+ LDF FVA +WA+P WQ WDLL+LWLA LHG NGLRTII+DY+ KD TRFWL
Sbjct 59 MVGDGINALDFGFVAGKWANPLWQVWDLLMLWLAMLHGTNGLRTIINDYAEKDQTRFWLK 118
Query 119 SLLVLSMLFTLMLGTYVIVTFDPNI 143
SLLV + + ++LGT VI TFDP +
Sbjct 119 SLLVTASIVVVVLGTLVIFTFDPCL 143
>gi|302524159|ref|ZP_07276501.1| succinate dehydrogenase hydrophobic membrane anchor protein [Streptomyces
sp. AA4]
gi|302433054|gb|EFL04870.1| succinate dehydrogenase hydrophobic membrane anchor protein [Streptomyces
sp. AA4]
Length=142
Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/114 (65%), Positives = 92/114 (81%), Gaps = 0/114 (0%)
Query 30 NFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYRLDFNFVAQRWASPFWQTWDLLLL 89
NFE ++WLFMR SG+ L+ L +GH+FIM + D GV+R+++ FVA RWASPFWQ WDL +L
Sbjct 26 NFELYSWLFMRISGLALIILVLGHLFIMNILDGGVHRINWGFVAGRWASPFWQFWDLAML 85
Query 90 WLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSMLFTLMLGTYVIVTFDPNI 143
WLA++HGGNGLRTIIDDY+RKD+TRFWL LL +SM L +GT VI TFDP +
Sbjct 86 WLAEIHGGNGLRTIIDDYARKDSTRFWLKILLYVSMALILAVGTMVIFTFDPEM 139
>gi|290957988|ref|YP_003489170.1| succinate dehydrogenase membrane subunit [Streptomyces scabiei
87.22]
gi|260647514|emb|CBG70619.1| putative succinate dehydrogenase membrane subunit [Streptomyces
scabiei 87.22]
Length=163
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/141 (59%), Positives = 98/141 (70%), Gaps = 8/141 (5%)
Query 9 SHDRPASLDNP------RSPRRRAGMPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDN 62
S D PA P ++P+ G NFE AWLFMR SGVVLV L IGH+ I L+ D
Sbjct 24 SPDNPAPFIEPPRKRTKKTPKSTRG--NFEMAAWLFMRLSGVVLVVLVIGHLIIQLVLDG 81
Query 63 GVYRLDFNFVAQRWASPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLV 122
GV ++ F FVA RWASPFWQTWDLL+LWLA LHG NGLRT+I+DY+ + TR WL LL
Sbjct 82 GVSKIGFAFVAGRWASPFWQTWDLLMLWLAMLHGANGLRTVINDYAERPNTRLWLKGLLY 141
Query 123 LSMLFTLMLGTYVIVTFDPNI 143
+ +FT++LGT VI TFDPNI
Sbjct 142 TATVFTILLGTLVIFTFDPNI 162
Lambda K H
0.330 0.142 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128702269584
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40