BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3320c
Length=142
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610456|ref|NP_217837.1| hypothetical protein Rv3320c [Mycob... 289 9e-77
gi|340628304|ref|YP_004746756.1| hypothetical protein MCAN_33461... 288 2e-76
gi|289747139|ref|ZP_06506517.1| conserved hypothetical protein [... 264 4e-69
gi|206601848|gb|EDZ38331.1| Hypothetical protein CGL2_11278040 [... 159 2e-37
gi|256826277|ref|YP_003150237.1| nucleic acid-binding protein [K... 134 3e-30
gi|121595342|ref|YP_987238.1| PilT domain-containing protein [Ac... 134 3e-30
gi|87123276|ref|ZP_01079127.1| hypothetical protein RS9917_05435... 127 4e-28
gi|114331350|ref|YP_747572.1| PilT domain-containing protein [Ni... 126 1e-27
gi|134291479|ref|YP_001115248.1| PilT domain-containing protein ... 124 7e-27
gi|116624591|ref|YP_826747.1| PilT domain-containing protein [Ca... 117 7e-25
gi|344199817|ref|YP_004784143.1| PIN domain-containing protein f... 115 2e-24
gi|330818818|ref|YP_004351035.1| PilT domain-containing protein ... 114 5e-24
gi|333815879|gb|AEG08546.1| PIN domain protein family protein [S... 111 3e-23
gi|304413692|ref|ZP_07395136.1| PIN domain-containing addiction ... 111 4e-23
gi|254420497|ref|ZP_05034221.1| Mycobacterium tuberculosis PIN d... 110 6e-23
gi|334319720|ref|YP_004556349.1| PIN domain-containing protein f... 109 2e-22
gi|241518561|ref|YP_002979189.1| PIN domain protein family prote... 108 3e-22
gi|113953974|ref|YP_729372.1| hypothetical protein sync_0135 [Sy... 107 6e-22
gi|225874392|ref|YP_002755851.1| Mycobacterium tuberculosis PIN ... 106 1e-21
gi|87123102|ref|ZP_01078953.1| hypothetical protein RS9917_04565... 105 2e-21
gi|317967919|ref|ZP_07969309.1| hypothetical protein SCB02_00127... 102 2e-20
gi|294339103|emb|CAZ87457.1| conserved hypothetical protein; put... 101 3e-20
gi|24214369|ref|NP_711850.1| hypothetical protein LA_1669 [Lepto... 100 6e-20
gi|45657964|ref|YP_002050.1| hypothetical protein LIC12116 [Lept... 99.8 1e-19
gi|124515583|gb|EAY57093.1| conserved hypothetical protein [Lept... 86.7 1e-15
gi|15609667|ref|NP_217046.1| hypothetical protein Rv2530c [Mycob... 81.3 5e-14
gi|320109069|ref|YP_004184659.1| PIN domain-containing protein f... 79.0 2e-13
gi|240169388|ref|ZP_04748047.1| hypothetical protein MkanA1_0874... 78.6 3e-13
gi|15842022|ref|NP_337059.1| hypothetical protein MT2569 [Mycoba... 75.9 2e-12
gi|15609631|ref|NP_217010.1| hypothetical protein Rv2494 [Mycoba... 75.9 2e-12
gi|254232624|ref|ZP_04925951.1| conserved hypothetical protein [... 75.1 3e-12
gi|336179654|ref|YP_004585029.1| PIN domain-containing protein f... 74.7 4e-12
gi|15607757|ref|NP_215131.1| hypothetical protein Rv0617 [Mycoba... 74.3 5e-12
gi|289758626|ref|ZP_06518004.1| conserved hypothetical protein [... 73.9 6e-12
gi|269954934|ref|YP_003324723.1| PIN domain-containing protein f... 71.2 5e-11
gi|326772971|ref|ZP_08232255.1| toxin-antitoxin system, toxin co... 68.6 3e-10
gi|336120816|ref|YP_004575602.1| hypothetical protein MLP_51850 ... 64.3 5e-09
gi|218459869|ref|ZP_03499960.1| hypothetical protein RetlK5_1036... 64.3 6e-09
gi|16264146|ref|NP_436938.1| hypothetical protein SM_b20412 [Sin... 60.1 1e-07
gi|324997204|ref|ZP_08118316.1| toxin [Pseudonocardia sp. P1] 53.9 8e-06
gi|262201135|ref|YP_003272343.1| PIN domain-containing protein f... 53.5 1e-05
gi|190895067|ref|YP_001985360.1| hypothetical protein RHECIAT_PC... 51.2 5e-05
gi|340358885|ref|ZP_08681388.1| PIN family toxin-antitoxin syste... 51.2 5e-05
gi|16264145|ref|NP_436937.1| hypothetical protein SM_b20411 [Sin... 49.7 1e-04
gi|333967818|gb|AEG34582.1| PIN domain protein family protein [T... 47.8 6e-04
gi|336115788|ref|YP_004570554.1| hypothetical protein MLP_01370 ... 46.2 0.001
gi|320108460|ref|YP_004184050.1| PIN domain-containing protein f... 45.8 0.002
gi|289749117|ref|ZP_06508495.1| conserved hypothetical protein [... 45.4 0.003
gi|116073603|ref|ZP_01470865.1| hypothetical protein RS9916_3417... 44.7 0.004
gi|87123096|ref|ZP_01078947.1| hypothetical protein RS9917_04535... 44.7 0.004
>gi|15610456|ref|NP_217837.1| hypothetical protein Rv3320c [Mycobacterium tuberculosis H37Rv]
gi|15842912|ref|NP_337949.1| hypothetical protein MT3421 [Mycobacterium tuberculosis CDC1551]
gi|31794501|ref|NP_856994.1| hypothetical protein Mb3349c [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=142
Score = 289 bits (740), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%), Gaps = 0/142 (0%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS
Sbjct 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV
Sbjct 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
Query 121 TFDQSIALTAVPGATKQHLATL 142
TFDQSIALTAVPGATKQHLATL
Sbjct 121 TFDQSIALTAVPGATKQHLATL 142
>gi|340628304|ref|YP_004746756.1| hypothetical protein MCAN_33461 [Mycobacterium canettii CIPT
140010059]
gi|340006494|emb|CCC45677.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 141/142 (99%), Positives = 142/142 (100%), Gaps = 0/142 (0%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS
Sbjct 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV
Sbjct 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
Query 121 TFDQSIALTAVPGATKQHLATL 142
TFDQ+IALTAVPGATKQHLATL
Sbjct 121 TFDQAIALTAVPGATKQHLATL 142
>gi|289747139|ref|ZP_06506517.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289687667|gb|EFD55155.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=202
Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 127/127 (100%), Positives = 127/127 (100%), Gaps = 0/127 (0%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS
Sbjct 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV
Sbjct 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
Query 121 TFDQSIA 127
TFDQSIA
Sbjct 121 TFDQSIA 127
>gi|206601848|gb|EDZ38331.1| Hypothetical protein CGL2_11278040 [Leptospirillum sp. Group
II '5-way CG']
Length=142
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/142 (53%), Positives = 96/142 (68%), Gaps = 0/142 (0%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
MR+LLD+NVL+ALLD DHV H AR W + GWASC +TQNG +R++S P YP+PIS
Sbjct 1 MRSLLDINVLIALLDSDHVSHHTAREWFSLHATDGWASCPLTQNGCMRIMSHPNYPNPIS 60
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
++ + L+ A + H+FW VS LD+ V D +R+H P Q+TD YLLALA+ H GRFV
Sbjct 61 ISRIRERLSEAASSSLHQFWPDDVSFLDAGVADTARIHGPHQITDLYLLALAIRHKGRFV 120
Query 121 TFDQSIALTAVPGATKQHLATL 142
TFD SI +AV G HL L
Sbjct 121 TFDGSIVTSAVQGFEGHHLVVL 142
>gi|256826277|ref|YP_003150237.1| nucleic acid-binding protein [Kytococcus sedentarius DSM 20547]
gi|256689670|gb|ACV07472.1| predicted nucleic acid-binding protein, contains PIN domain [Kytococcus
sedentarius DSM 20547]
Length=147
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/141 (54%), Positives = 90/141 (64%), Gaps = 3/141 (2%)
Query 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVA 62
ALLDVN L+ALLD DH DHE A W ++ GWA+CA TQ GF+RVISQP YPSPI+V
Sbjct 9 ALLDVNTLIALLDIDHRDHEAAHRWAEERLSNGWATCATTQMGFLRVISQPGYPSPITVD 68
Query 63 HAIDLLARATHTRYHEFWSCTVSILDSKV-IDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
A LL RAT HE+WS V +D H +Q+TDAYLLALAV +G VT
Sbjct 69 EAGRLLRRATDHPSHEYWSSEPQPCAGSVSLDVITGH--RQITDAYLLALAVHQNGCLVT 126
Query 122 FDQSIALTAVPGATKQHLATL 142
FD+ I VPGA ++HL L
Sbjct 127 FDRRITTRHVPGAGQEHLVRL 147
>gi|121595342|ref|YP_987238.1| PilT domain-containing protein [Acidovorax sp. JS42]
gi|120607422|gb|ABM43162.1| PIN domain family protein [Acidovorax sp. JS42]
Length=142
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/142 (49%), Positives = 91/142 (65%), Gaps = 0/142 (0%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
MRALLDVNVL+ALLD H+ H+RA W+ + GWASC +TQNG +R+++QP YP +
Sbjct 1 MRALLDVNVLIALLDAAHIHHQRASQWLEQSLHHGWASCPLTQNGCLRIMAQPAYPQALP 60
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
+A L +A T H F + S+LD+ + +L +QVTDAYLL LAV H RFV
Sbjct 61 LAAVAQRLGQAAATPAHLFIADDYSLLDADSLHWPQLLGHRQVTDAYLLGLAVRHGCRFV 120
Query 121 TFDQSIALTAVPGATKQHLATL 142
+FD + L AVPGA +HL L
Sbjct 121 SFDARVNLAAVPGAKAEHLWVL 142
>gi|87123276|ref|ZP_01079127.1| hypothetical protein RS9917_05435 [Synechococcus sp. RS9917]
gi|86168996|gb|EAQ70252.1| hypothetical protein RS9917_05435 [Synechococcus sp. RS9917]
Length=143
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/142 (46%), Positives = 88/142 (62%), Gaps = 0/142 (0%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
MRALLD+NV++ALLD H H A W++ GWASC I+QNG +R++SQP YP+
Sbjct 1 MRALLDINVIIALLDGQHSLHSTASQWLSHHAAAGWASCPISQNGVIRIMSQPSYPNAQP 60
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
A LA A H+FW +S+LD + + L P+Q+TDAYLLA+AVA+DG V
Sbjct 61 PAAIASRLAEACRHPSHQFWGGALSLLDPRHLKWHCLLGPRQITDAYLLAVAVANDGCLV 120
Query 121 TFDQSIALTAVPGATKQHLATL 142
+FD+ I VPGAT + +
Sbjct 121 SFDRRIHHDLVPGATADQIVVV 142
>gi|114331350|ref|YP_747572.1| PilT domain-containing protein [Nitrosomonas eutropha C91]
gi|114308364|gb|ABI59607.1| PIN domain family protein [Nitrosomonas eutropha C91]
Length=142
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/142 (46%), Positives = 91/142 (65%), Gaps = 0/142 (0%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
MRALLDVNVL+ALLD HV H RA W+ +I GWASC +TQNG +R+++QP YP +S
Sbjct 1 MRALLDVNVLIALLDAGHVHHVRASQWLEQEIIHGWASCPLTQNGCLRIMTQPAYPEALS 60
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
+A LA+A H F + S+LD++ ++ ++ Q+ D+YLL LAV H RFV
Sbjct 61 LAAVASRLAQAIAHPTHAFVADDYSLLDAEQVNWQQMLGHWQIIDSYLLGLAVRHHCRFV 120
Query 121 TFDQSIALTAVPGATKQHLATL 142
+FD + V GA++QH+ L
Sbjct 121 SFDSRLNPDIVSGASQQHIVIL 142
>gi|134291479|ref|YP_001115248.1| PilT domain-containing protein [Burkholderia vietnamiensis G4]
gi|134134668|gb|ABO58993.1| PIN domain family protein [Burkholderia vietnamiensis G4]
Length=144
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/139 (50%), Positives = 86/139 (62%), Gaps = 9/139 (6%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP----SPI 59
LLDVNVL+ALLD HV HE A AW WA+C +T+NG +R+I P+YP SP
Sbjct 5 LLDVNVLIALLDPAHVQHEPAHAWFGRVGHSAWATCPLTENGVLRIIGNPKYPNTMVSPA 64
Query 60 SVAH-AIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGR 118
SVA + L + A HT FWS VS+LD K +D +RL S Q+TD YLLALA AH G+
Sbjct 65 SVAPLVVQLRSHAGHT----FWSDDVSLLDEKHVDATRLLSSAQLTDTYLLALARAHKGK 120
Query 119 FVTFDQSIALTAVPGATKQ 137
TFD+ + + AVP K
Sbjct 121 LATFDRRLVVDAVPNGGKH 139
>gi|116624591|ref|YP_826747.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116227753|gb|ABJ86462.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=147
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/141 (46%), Positives = 81/141 (58%), Gaps = 1/141 (0%)
Query 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVA 62
ALLDVNVL+AL D H+DH A W +RGWA+C IT NG VR++S P YP +
Sbjct 4 ALLDVNVLIALFDPAHIDHVEAHRWFGLNRKRGWATCPITINGCVRILSSPGYPGINASP 63
Query 63 HAIDLLARATHTRY-HEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
I +A+ H FW +VS+LD + S + K +TD YLL LAV + GR T
Sbjct 64 AEITARMQASFANVDHHFWPDSVSLLDEALFRPSMITGHKNITDVYLLGLAVRNHGRLAT 123
Query 122 FDQSIALTAVPGATKQHLATL 142
FDQSI L AV GA +L +
Sbjct 124 FDQSIPLKAVHGAAPGNLVVI 144
>gi|344199817|ref|YP_004784143.1| PIN domain-containing protein family protein [Acidithiobacillus
ferrivorans SS3]
gi|343775261|gb|AEM47817.1| PIN domain protein family protein [Acidithiobacillus ferrivorans
SS3]
Length=142
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/132 (45%), Positives = 80/132 (61%), Gaps = 1/132 (0%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI 59
M LLDVNVL+AL+D HV H+ A W + WA+C +T+NG +R++ PRYP SP
Sbjct 1 MTFLLDVNVLIALIDPMHVQHDMAHEWFAAHGQPAWATCPLTENGVLRIVGHPRYPNSPG 60
Query 60 SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF 119
+ A L+ + H FW +S+LD ID SRL + Q+TD+YLLALA AH+G+
Sbjct 61 TPAAVAPLIQGLRASPGHVFWPDDISLLDVDHIDASRLLTSGQITDSYLLALACAHEGQL 120
Query 120 VTFDQSIALTAV 131
TFD + AV
Sbjct 121 ATFDHRLVTNAV 132
>gi|330818818|ref|YP_004351035.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
gi|327374360|gb|AEA65712.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
Length=151
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/138 (43%), Positives = 81/138 (59%), Gaps = 1/138 (0%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
M LLDVNVL+ALLD HV HE A W WA+C +T+NG +R+I PRYP+ +
Sbjct 9 MTYLLDVNVLIALLDAGHVQHEAAHEWFGSAAHAAWATCPLTENGVLRIIGNPRYPNTLG 68
Query 61 VAHAI-DLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF 119
A+ L+ + H FW +S+L+ + +D SR+ + QVTD YLLALA H G+
Sbjct 69 TPAAVAPLVTQLRAHPGHTFWWDDLSLLNPEQVDVSRILATDQVTDTYLLALARVHGGKL 128
Query 120 VTFDQSIALTAVPGATKQ 137
TFD+ + + AVP +
Sbjct 129 ATFDRRLVVDAVPDGARH 146
>gi|333815879|gb|AEG08546.1| PIN domain protein family protein [Sinorhizobium meliloti BL225C]
Length=147
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/141 (42%), Positives = 84/141 (60%), Gaps = 2/141 (1%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI 59
M LLDVNVL+AL+D H+ H+ A W + WA+C IT+NG +R++ P YP SP
Sbjct 1 MTFLLDVNVLIALIDPSHIGHDDAHEWFASIGQTAWATCPITENGVIRIVGNPEYPNSPG 60
Query 60 SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF 119
S A++++A+ H FW VS++ S I S++ + QVTD YLLALA A G+
Sbjct 61 SPLPAMEIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKL 120
Query 120 VTFDQSIALTAV-PGATKQHL 139
TFD+ ++ AV G + HL
Sbjct 121 ATFDRKLSAAAVTKGNSALHL 141
>gi|304413692|ref|ZP_07395136.1| PIN domain-containing addiction module [Candidatus Regiella insecticola
LSR1]
gi|304283783|gb|EFL92177.1| PIN domain-containing addiction module [Candidatus Regiella insecticola
LSR1]
Length=147
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/141 (44%), Positives = 87/141 (62%), Gaps = 3/141 (2%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI 59
M LLDVNVL+AL+D H+ H+ A W Q + WA+C +TQNG +R++ RYP SP
Sbjct 1 MIFLLDVNVLIALVDPAHIQHDAAHTWFEKQ-GQDWATCPLTQNGVLRIVGHGRYPNSPG 59
Query 60 SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF 119
+ A +L+ H FW +S+LD++ +D +RL + Q+TD+YLLALA AH+G+
Sbjct 60 TPAAVAELMTTLCSLPGHCFWPDDISLLDTEKLDATRLLTSAQLTDSYLLALACAHNGQL 119
Query 120 VTFDQSIALTAV-PGATKQHL 139
TFD+ + AV GA HL
Sbjct 120 ATFDRRLETDAVHNGARSLHL 140
>gi|254420497|ref|ZP_05034221.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp.
BAL3]
gi|196186674|gb|EDX81650.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp.
BAL3]
Length=145
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/143 (42%), Positives = 84/143 (59%), Gaps = 2/143 (1%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
M LLDVNVL+AL+D HV H+ A W + WA+C IT+NG VR++ RY +P+
Sbjct 1 MTYLLDVNVLIALVDPRHVFHDTANGWFQREAAGSWATCPITENGLVRIVGNSRYRNPVG 60
Query 61 -VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF 119
+ + +L H FW +S+ D ++ D S L +P+Q+TDAYLLALAV++ GR
Sbjct 61 PPSEIVRILELLRDMAGHVFWPDAISLADDRLFDPSALTTPEQITDAYLLALAVSNGGRL 120
Query 120 VTFDQSIALTAV-PGATKQHLAT 141
T D+ ++ AV G HL T
Sbjct 121 ATLDRRLSPDAVRDGRAALHLVT 143
>gi|334319720|ref|YP_004556349.1| PIN domain-containing protein family protein [Sinorhizobium meliloti
AK83]
gi|334097459|gb|AEG55469.1| PIN domain protein family protein [Sinorhizobium meliloti AK83]
Length=147
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/141 (42%), Positives = 83/141 (59%), Gaps = 2/141 (1%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI 59
M LLDVNVL+AL+D H+ H+ A W + WA+C IT+NG +R++ P YP SP
Sbjct 1 MTFLLDVNVLIALIDPSHIGHDDAHEWFASIGQTTWATCPITENGVIRIVGNPEYPNSPG 60
Query 60 SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF 119
S ++++A+ H FW VS++ S I S++ + QVTD YLLALA A G+
Sbjct 61 SPLPVMEIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKL 120
Query 120 VTFDQSIALTAV-PGATKQHL 139
TFD+ ++ AV G + HL
Sbjct 121 ATFDRKLSAAAVTKGNSALHL 141
>gi|241518561|ref|YP_002979189.1| PIN domain protein family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862974|gb|ACS60638.1| PIN domain protein family protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length=147
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/143 (41%), Positives = 85/143 (60%), Gaps = 2/143 (1%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI 59
M LLDVNVL+AL+D HV H+ A W + WA+C IT+NG +R++ P+YP SP
Sbjct 1 MTFLLDVNVLIALIDPGHVAHDDAHEWFAAIGQSAWATCPITENGVIRIVGNPQYPNSPG 60
Query 60 SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF 119
S + ++++ + H FW VS++ S I +++ + QVTD YLLALA A G+
Sbjct 61 SPSLVMEIVRKLRSLPGHSFWPDDVSLVGSGDIAPAKILTSGQVTDTYLLALAKARGGQL 120
Query 120 VTFDQSIALTAVP-GATKQHLAT 141
TFD+ ++ AV G + HL T
Sbjct 121 ATFDRKLSAAAVTRGNSALHLIT 143
>gi|113953974|ref|YP_729372.1| hypothetical protein sync_0135 [Synechococcus sp. CC9311]
gi|113881325|gb|ABI46283.1| Mycobacterium tuberculosis PIN domain family subfamily [Synechococcus
sp. CC9311]
Length=148
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/135 (43%), Positives = 75/135 (56%), Gaps = 1/135 (0%)
Query 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPISV 61
ALLDVNVL+AL+D HV HE + W GWA+C +TQN +R++ PRYP SP
Sbjct 6 ALLDVNVLIALIDPQHVHHEPSHRWFQAHGGDGWATCPLTQNALLRILGNPRYPNSPGGP 65
Query 62 AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
A + L H FW +S + V + L Q+TD YLL LAV H GR V+
Sbjct 66 AVVMSFLQELLAHPAHVFWPDALSWQATGVFEAEALLHHGQITDTYLLGLAVHHQGRLVS 125
Query 122 FDQSIALTAVPGATK 136
FD+ ++L AV G +
Sbjct 126 FDRRLSLRAVRGGEE 140
>gi|225874392|ref|YP_002755851.1| Mycobacterium tuberculosis PIN domain protein [Acidobacterium
capsulatum ATCC 51196]
gi|225792658|gb|ACO32748.1| Mycobacterium tuberculosis PIN domain protein [Acidobacterium
capsulatum ATCC 51196]
Length=146
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/136 (42%), Positives = 81/136 (60%), Gaps = 2/136 (1%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRY-PSPISVA 62
LLDVNVL+A+ HV H RA+ W + GWA+C +TQ GFVR++S P + S ++
Sbjct 5 LLDVNVLVAMFWPSHVHHVRAQQWFSEHSRHGWATCPLTQTGFVRIVSNPAFSKSAVTAR 64
Query 63 HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF 122
AI +L R H FW+ +V + ++ RL KQVTDAYL+ LA H GR +TF
Sbjct 65 DAIHVLQENLKHRSHVFWADSVGVNEAASFTHDRLIGHKQVTDAYLIGLAHHHQGRLLTF 124
Query 123 DQSIALTAVPGATKQH 138
D+ + + +P A ++H
Sbjct 125 DRGLG-SLLPPALQKH 139
>gi|87123102|ref|ZP_01078953.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
gi|86168822|gb|EAQ70078.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
Length=149
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/133 (44%), Positives = 72/133 (55%), Gaps = 1/133 (0%)
Query 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPISV 61
ALLDVNVL+ALLD HV HE A W GWA+C +TQN +R++S PRYP SP
Sbjct 6 ALLDVNVLIALLDPQHVHHEPAHRWFQANASYGWATCPLTQNALLRILSNPRYPNSPGGP 65
Query 62 AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
A + LL H FW +S + L Q+TD YLLALAV G ++
Sbjct 66 ASVMPLLQGMLSHPGHLFWPDLLSWSTDGELQAELLLHHGQITDTYLLALAVHQGGCLMS 125
Query 122 FDQSIALTAVPGA 134
FD ++ AVPG
Sbjct 126 FDARLSTCAVPGG 138
>gi|317967919|ref|ZP_07969309.1| hypothetical protein SCB02_00127 [Synechococcus sp. CB0205]
Length=144
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/128 (46%), Positives = 70/128 (55%), Gaps = 7/128 (5%)
Query 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP----SP 58
ALLDVNVL+ALLD HV HE W + WASCA+TQN +R++ PRYP P
Sbjct 6 ALLDVNVLIALLDPHHVHHELCHGWFADRGAAPWASCAMTQNAVLRILGNPRYPISPGPP 65
Query 59 ISVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGR 118
++A +D L HEFW S+L I RS L Q+TD YLLALA H G
Sbjct 66 PTIAPHLDSLVEHP---GHEFWDSNPSLLSQGFIARSALIDYAQITDLYLLALARHHGGT 122
Query 119 FVTFDQSI 126
T D+ I
Sbjct 123 LATLDKRI 130
>gi|294339103|emb|CAZ87457.1| conserved hypothetical protein; putative PIN domain [Thiomonas
sp. 3As]
Length=143
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/129 (40%), Positives = 76/129 (59%), Gaps = 1/129 (0%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVAH 63
LLDVNVL+AL+D HV H+ A W WA+C +T+NG +R++ PRYP+
Sbjct 5 LLDVNVLIALIDPAHVQHDAAHHWFAETGSASWATCPLTENGLLRIVGHPRYPNTPGTPA 64
Query 64 AIDLLARATHT-RYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF 122
+ ++ +A H FW +S+L+ ++I RL S Q+TD+YLLALA H G+ +F
Sbjct 65 TVAVVLQALRALPGHHFWPDDISLLNPELILTDRLLSHTQITDSYLLALARHHSGKLASF 124
Query 123 DQSIALTAV 131
D+ + AV
Sbjct 125 DRKLVADAV 133
>gi|24214369|ref|NP_711850.1| hypothetical protein LA_1669 [Leptospira interrogans serovar
Lai str. 56601]
gi|24195304|gb|AAN48868.1| hypothetical protein LA_1669 [Leptospira interrogans serovar
Lai str. 56601]
Length=144
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/140 (42%), Positives = 78/140 (56%), Gaps = 2/140 (1%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI 59
M+ LLDVNVL++L D +HV HE+A W + + GWA+C ITQN VR++S YP +P
Sbjct 1 MKYLLDVNVLISLCDSNHVFHEKAWKWFDRKAKNGWATCPITQNALVRIMSHSSYPGNPG 60
Query 60 SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF 119
V +L + H+F +SI S S KQ+TD YLLAL+V H +F
Sbjct 61 GVEVVSAILHSLLKVKGHQFIPDNISINSSLFYLNIVSVSSKQITDVYLLALSVHHKVKF 120
Query 120 VTFDQSIALTAVPGATKQHL 139
TFD I +V K+HL
Sbjct 121 ATFDSKIPYDSVDRG-KEHL 139
>gi|45657964|ref|YP_002050.1| hypothetical protein LIC12116 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601205|gb|AAS70687.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length=144
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/140 (42%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI 59
M+ LLDVNVL++L D +HV HE+A W + GWA+C ITQN VR++S YP +P
Sbjct 1 MKYLLDVNVLISLCDSNHVFHEKAWKWFDRKARNGWATCPITQNALVRIMSHSSYPGNPG 60
Query 60 SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF 119
V +L + H+F +SI S S KQ+TD YLLAL+V H +F
Sbjct 61 GVEVVSAILHSLLKVKGHQFIPDNISINSSLFYLNIVSVSSKQITDVYLLALSVHHKVKF 120
Query 120 VTFDQSIALTAVPGATKQHL 139
TFD I +V K+HL
Sbjct 121 ATFDSKIPYDSVDRG-KEHL 139
>gi|124515583|gb|EAY57093.1| conserved hypothetical protein [Leptospirillum rubarum]
Length=193
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 65/115 (57%), Gaps = 0/115 (0%)
Query 2 RALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISV 61
R+LLD+NVL+ LLD DHV H +R ++ GW+SC +T NG + ++S P P I V
Sbjct 70 RSLLDINVLIVLLDSDHVFHSASREGLSLHATDGWSSCPLTDNGCMCIMSCPNDPDTIPV 129
Query 62 AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHD 116
+ D L+ A H+FW V LD+ V SR H P+Q+TD L+ + D
Sbjct 130 SRIRDRLSEAASGPPHQFWPEDVHFLDAGVAVASRTHGPRQITDLSWLSPSGRRD 184
>gi|15609667|ref|NP_217046.1| hypothetical protein Rv2530c [Mycobacterium tuberculosis H37Rv]
gi|15842064|ref|NP_337101.1| hypothetical protein MT2605 [Mycobacterium tuberculosis CDC1551]
gi|31793711|ref|NP_856204.1| hypothetical protein Mb2559c [Mycobacterium bovis AF2122/97]
81 more sequence titles
Length=139
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/124 (42%), Positives = 69/124 (56%), Gaps = 3/124 (2%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
M ALLDVNVL+AL +HV H A+ W T GWA+ IT+ G+VR IS R +S
Sbjct 1 MTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVR-ISSNRSVMQVS 59
Query 61 VAHAIDL--LARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGR 118
AI + LA T H FW V ++ DR + + ++VTD +L+ALA + GR
Sbjct 60 TTPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGR 119
Query 119 FVTF 122
VTF
Sbjct 120 LVTF 123
>gi|320109069|ref|YP_004184659.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319927590|gb|ADV84665.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=147
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/123 (40%), Positives = 62/123 (51%), Gaps = 2/123 (1%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVAH 63
LLDVNV +ALL DH H+ AW WA C T+ GF+R + PR P I++
Sbjct 9 LLDVNVFVALLSEDHTHHQLVTAWFNTP-SLLWAICPFTEAGFLRNATAPR-PGQITMTE 66
Query 64 AIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTFD 123
A +LAR + + T +RL+ KQVTDAYLL LAV D VT D
Sbjct 67 ATAVLARMAQVPGYHYLPITADWRSLCSPFSTRLYGTKQVTDAYLLGLAVREDLVLVTMD 126
Query 124 QSI 126
+ I
Sbjct 127 KGI 129
>gi|240169388|ref|ZP_04748047.1| hypothetical protein MkanA1_08748 [Mycobacterium kansasii ATCC
12478]
Length=133
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/127 (37%), Positives = 73/127 (58%), Gaps = 8/127 (6%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
M ALLD NVL+AL+ +HV H+ A AW++ + + G+A+C ITQ VR + + P+ +
Sbjct 1 MIALLDSNVLIALVVAEHVHHDVAAAWLSAR-DNGFATCPITQGSLVRFLMRTGQPAAV- 58
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
A +++ + HEFW +VS D ++ + +QVTDAYL LA + +G+
Sbjct 59 ---AREVVGAVETAKRHEFWPDSVSFADVEI---GGVVGHRQVTDAYLAQLARSRNGQLA 112
Query 121 TFDQSIA 127
T D +A
Sbjct 113 TLDSGLA 119
>gi|15842022|ref|NP_337059.1| hypothetical protein MT2569 [Mycobacterium tuberculosis CDC1551]
gi|254366798|ref|ZP_04982840.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|13882299|gb|AAK46873.1| hypothetical protein MT2569 [Mycobacterium tuberculosis CDC1551]
gi|134152308|gb|EBA44353.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|323718902|gb|EGB28056.1| toxin protein [Mycobacterium tuberculosis CDC1551A]
Length=141
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/125 (42%), Positives = 68/125 (55%), Gaps = 4/125 (3%)
Query 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV 61
ALLDVN L+AL H+ H R R W T GWA+C +T+ GFVRV + P+ PS I +
Sbjct 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
Query 62 AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
A A +L H F + VS++D V + +QVTDA+LL LA R VT
Sbjct 62 ADARPVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT 118
Query 122 FDQSI 126
FD +
Sbjct 119 FDAGV 123
>gi|15609631|ref|NP_217010.1| hypothetical protein Rv2494 [Mycobacterium tuberculosis H37Rv]
gi|31793674|ref|NP_856167.1| hypothetical protein Mb2522 [Mycobacterium bovis AF2122/97]
gi|121638376|ref|YP_978600.1| hypothetical protein BCG_2514 [Mycobacterium bovis BCG str. Pasteur
1173P2]
68 more sequence titles
Length=141
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/125 (42%), Positives = 68/125 (55%), Gaps = 4/125 (3%)
Query 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV 61
ALLDVN L+AL H+ H R R W T GWA+C +T+ GFVRV + P+ PS I +
Sbjct 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
Query 62 AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
A A +L H F + VS++D V + +QVTDA+LL LA R VT
Sbjct 62 ADARRVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT 118
Query 122 FDQSI 126
FD +
Sbjct 119 FDAGV 123
>gi|254232624|ref|ZP_04925951.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124601683|gb|EAY60693.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=141
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/125 (41%), Positives = 68/125 (55%), Gaps = 4/125 (3%)
Query 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV 61
AL+DVN L+AL H+ H R R W T GWA+C +T+ GFVRV + P+ PS I +
Sbjct 2 ALIDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI 61
Query 62 AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
A A +L H F + VS++D V + +QVTDA+LL LA R VT
Sbjct 62 ADARPVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT 118
Query 122 FDQSI 126
FD +
Sbjct 119 FDAGV 123
>gi|336179654|ref|YP_004585029.1| PIN domain-containing protein family protein [Frankia symbiont
of Datisca glomerata]
gi|334860634|gb|AEH11108.1| PIN domain protein family protein [Frankia symbiont of Datisca
glomerata]
Length=131
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/127 (36%), Positives = 68/127 (54%), Gaps = 8/127 (6%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
M LLD NVL+ L+ DHV H+ A AW+ G R +A+C IT+ VR++ + + +
Sbjct 1 MATLLDANVLITLIVTDHVHHDAAEAWLAGTAGR-FATCPITEGSLVRLLIREGQSAQTA 59
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
A +++ HEFW VS + + + +QVTDAYL LA H+GR
Sbjct 60 TA----VVSAIAGDSRHEFWPDEVSY---SAVSMTGVIGHRQVTDAYLAYLARTHNGRLA 112
Query 121 TFDQSIA 127
+F+Q +A
Sbjct 113 SFNQGLA 119
>gi|15607757|ref|NP_215131.1| hypothetical protein Rv0617 [Mycobacterium tuberculosis H37Rv]
gi|15840020|ref|NP_335057.1| hypothetical protein MT0646 [Mycobacterium tuberculosis CDC1551]
gi|31791800|ref|NP_854293.1| hypothetical protein Mb0634 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=133
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/127 (38%), Positives = 70/127 (56%), Gaps = 8/127 (6%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS 60
M LLD NVL+AL+ +HV H+ A W+ + G+A+C +TQ VR + + S S
Sbjct 1 MTVLLDANVLIALVVAEHVHHDAAADWLMAS-DTGFATCPMTQGSLVRFLVR----SGQS 55
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
A A D+++ T HEFW +S +V + + +QVTDAYL LA +HDG+
Sbjct 56 AAAARDVVSAVQCTSRHEFWPDALSFAGVEV---AGVVGHRQVTDAYLAQLARSHDGQLA 112
Query 121 TFDQSIA 127
T D +A
Sbjct 113 TLDSGLA 119
>gi|289758626|ref|ZP_06518004.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|294994398|ref|ZP_06800089.1| toxin [Mycobacterium tuberculosis 210]
gi|289714190|gb|EFD78202.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|326904108|gb|EGE51041.1| toxin [Mycobacterium tuberculosis W-148]
gi|339295377|gb|AEJ47488.1| hypothetical protein CCDC5079_2298 [Mycobacterium tuberculosis
CCDC5079]
gi|339298997|gb|AEJ51107.1| hypothetical protein CCDC5180_2270 [Mycobacterium tuberculosis
CCDC5180]
Length=141
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/125 (41%), Positives = 67/125 (54%), Gaps = 4/125 (3%)
Query 3 ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV 61
ALLDVN L+AL H+ H R R W T GWA+C +T+ GFVR + P+ PS I +
Sbjct 2 ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRASTNPKVLPSAIGI 61
Query 62 AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT 121
A A +L H F + VS++D V + +QVTDA+LL LA R VT
Sbjct 62 ADARRVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT 118
Query 122 FDQSI 126
FD +
Sbjct 119 FDAGV 123
>gi|269954934|ref|YP_003324723.1| PIN domain-containing protein family protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269303615|gb|ACZ29165.1| PIN domain protein family protein [Xylanimonas cellulosilytica
DSM 15894]
Length=141
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/143 (41%), Positives = 75/143 (53%), Gaps = 11/143 (7%)
Query 4 LLDVNVLLALLDRDHVDHERARAWI--TGQIERGWASCAITQNGFVRVISQPR-YPSPIS 60
L DVNVL+AL DHV H A +W+ GQ +A+ A+T+ GFVRV P P S
Sbjct 5 LPDVNVLIALHFEDHVHHVPAMSWLRKGGQ----FATTALTEAGFVRVSMNPAIVGEPFS 60
Query 61 VAHAIDLLARA-THTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF 119
A++ L R HTR FW+ S+ S DR L KQ TD +LL LA + DG
Sbjct 61 GVEALEALRRLRGHTRA-TFWADDTSLATSPFADRV-LSGHKQTTDLHLLNLAASRDGVL 118
Query 120 VTFDQSIALTAVPGATKQHLATL 142
VTFD + + A ++HL L
Sbjct 119 VTFDSKLG-APLRQAERRHLDVL 140
>gi|326772971|ref|ZP_08232255.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces
viscosus C505]
gi|326637603|gb|EGE38505.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces
viscosus C505]
Length=146
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/125 (38%), Positives = 63/125 (51%), Gaps = 4/125 (3%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPS-PISVA 62
LLDVNVL+AL +H HE AW G + WA+C+ITQ ++R++ PR I+ A
Sbjct 9 LLDVNVLVALSLPNHAHHEVVSAWFDGVDQ--WATCSITQAAYLRLLMNPRVTGFEIAAA 66
Query 63 HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF 122
+ L T H F + I SRL PKQVTD +L+ LA H+ T
Sbjct 67 DVLSGLGGLTSLDDHVFLVDDAPPAEPS-ISFSRLKGPKQVTDLHLVDLAARHNAVLATM 125
Query 123 DQSIA 127
D +A
Sbjct 126 DGRMA 130
>gi|336120816|ref|YP_004575602.1| hypothetical protein MLP_51850 [Microlunatus phosphovorus NM-1]
gi|334688614|dbj|BAK38199.1| hypothetical protein MLP_51850 [Microlunatus phosphovorus NM-1]
Length=148
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/130 (38%), Positives = 71/130 (55%), Gaps = 4/130 (3%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPI-SVA 62
L DVN+L+ALL HV H +A+AW T +ER +A+ IT++GF+R+ P + S+
Sbjct 13 LPDVNLLVALLHPAHVHHLQAQAWFTS-VER-FATTPITESGFIRMALNPAVAGQVTSLD 70
Query 63 HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF 122
A+ L + E+ + S L ID L +QVTD +L+ LA H R VTF
Sbjct 71 DAMSSLNSVRADKRVEYVADDTS-LALPTIDLVGLVGFRQVTDFHLVNLAACHSARLVTF 129
Query 123 DQSIALTAVP 132
D+ +A T P
Sbjct 130 DRKLAPTLAP 139
>gi|218459869|ref|ZP_03499960.1| hypothetical protein RetlK5_10369 [Rhizobium etli Kim 5]
Length=100
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/85 (39%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query 48 RVISQPRYP-SPISVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDA 106
R++ P+YP SP S A ++++ + H FW VS++ S I +++ +P QVTD
Sbjct 1 RIVGHPKYPNSPGSPALVMEIVRKLRSLPGHSFWPDDVSLVGSGDIAPTKILTPGQVTDT 60
Query 107 YLLALAVAHDGRFVTFDQSIALTAV 131
YLLALA A G+ TFD+ ++ AV
Sbjct 61 YLLALAKARGGQLATFDRKLSAAAV 85
>gi|16264146|ref|NP_436938.1| hypothetical protein SM_b20412 [Sinorhizobium meliloti 1021]
gi|15140271|emb|CAC48798.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti 1021]
Length=54
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/54 (45%), Positives = 34/54 (63%), Gaps = 0/54 (0%)
Query 1 MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR 54
M LLDVNVL+AL+D H+ H+ A W + WA+C IT+NG +R++ P
Sbjct 1 MTFLLDVNVLIALIDPSHIGHDDAHEWFASIGQTAWATCPITENGVIRIVGNPE 54
>gi|324997204|ref|ZP_08118316.1| toxin [Pseudonocardia sp. P1]
Length=141
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/127 (38%), Positives = 66/127 (52%), Gaps = 14/127 (11%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVR-VISQPRYPSPISVA 62
LLD NVL+AL +H H+RA AW +IER +A C + + VR ++ PS
Sbjct 5 LLDANVLIALTVTEHEHHDRASAW-GARIER-FALCPVVEGALVRFLVRAGETPS----- 57
Query 63 HAIDLLARATHTRYH-EFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDG-RFV 120
A LL RA H EFW ++S D+++ + +QVTDAYL +L A G
Sbjct 58 TATGLL-RAVHALPGCEFWPDSLSFADARL---GHVGGHRQVTDAYLTSLVAAVPGASPA 113
Query 121 TFDQSIA 127
T D+ +A
Sbjct 114 TLDEGLA 120
>gi|262201135|ref|YP_003272343.1| PIN domain-containing protein family protein [Gordonia bronchialis
DSM 43247]
gi|262084482|gb|ACY20450.1| PIN domain protein family protein [Gordonia bronchialis DSM 43247]
Length=144
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/130 (34%), Positives = 64/130 (50%), Gaps = 4/130 (3%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVI-SQPRYPSPISVA 62
LLD+NVL+AL HV H A E W++C +T+ G VRV+ ++ ++ A
Sbjct 7 LLDINVLVALSWDQHVHHGVAHERFAQLTE--WSTCPVTEAGLVRVLMTESAVGRVVTGA 64
Query 63 HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF 122
A+ LA F S+ DS VID L +QVTD +L+ LA + + TF
Sbjct 65 EALGQLAALRTVTGWGFLHDDASLADS-VIDLRVLMGRRQVTDLHLVNLAARNGRKLATF 123
Query 123 DQSIALTAVP 132
D + + VP
Sbjct 124 DAGLRESLVP 133
>gi|190895067|ref|YP_001985360.1| hypothetical protein RHECIAT_PC0000733 [Rhizobium etli CIAT 652]
gi|190700728|gb|ACE94810.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length=82
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/55 (46%), Positives = 35/55 (64%), Gaps = 0/55 (0%)
Query 77 HEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTFDQSIALTAV 131
H FW VS++ S I +++ + QVTD YLLALA AH G+ TFD+ ++ AV
Sbjct 13 HSFWPDDVSLVGSGDIAPTKILTSGQVTDTYLLALAKAHGGQLATFDRKLSAAAV 67
>gi|340358885|ref|ZP_08681388.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon
448 str. F0400]
gi|339885631|gb|EGQ75340.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon
448 str. F0400]
Length=148
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/124 (32%), Positives = 57/124 (46%), Gaps = 4/124 (3%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPS-PISVA 62
LLDVNV+LAL +H H A +W + WA+C IT++ + R++ + V+
Sbjct 10 LLDVNVMLALSLANHAHHRVATSWF--EDVGAWATCPITESAYCRLLLNSHVTGFELGVS 67
Query 63 HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF 122
D L HE + S L + ID S L +Q+TD +L+ LA T
Sbjct 68 EVFDALRTFCSVSGHELIEDSAS-LTAPAIDVSGLVGRRQITDFHLVDLAARSGALLATL 126
Query 123 DQSI 126
D I
Sbjct 127 DARI 130
>gi|16264145|ref|NP_436937.1| hypothetical protein SM_b20411 [Sinorhizobium meliloti 1021]
gi|15140270|emb|CAC48797.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti 1021]
Length=82
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (39%), Positives = 44/76 (58%), Gaps = 1/76 (1%)
Query 65 IDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTFDQ 124
++++A+ H FW VS++ S I S++ + QVTD YLLALA A G+ TFD+
Sbjct 1 MEIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKLATFDR 60
Query 125 SIALTAV-PGATKQHL 139
++ AV G + HL
Sbjct 61 KLSAAAVTKGNSALHL 76
>gi|333967818|gb|AEG34582.1| PIN domain protein family protein [Thermus thermophilus SG0.5JP17-16]
Length=138
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/153 (31%), Positives = 63/153 (42%), Gaps = 36/153 (23%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCA------ITQNGFVRVISQPRYPS 57
LLD+NV ALL +H H RARA+ W + +T G +R+++
Sbjct 3 LLDLNVWFALLVPEHPFHPRARAY--------WERASDPFLVRVTALGLLRLLTN----- 49
Query 58 PISVAHAIDLLARATHTRYHEFWSCTVSI----------LDSKVIDRSRL-HSPKQVTDA 106
A A+D + +W +S LD + D R SP+ TDA
Sbjct 50 ----AKAMDGKPLEVREAWRVYWELRLSSGVPLLEEPEGLDEALADLVRGGFSPRLWTDA 105
Query 107 YLLALAVAHDGRFVTFDQSIALTAVPGATKQHL 139
YL A A+A R VTFDQ PG HL
Sbjct 106 YLAAFALAGGHRLVTFDQDF--LGFPGLEVLHL 136
>gi|336115788|ref|YP_004570554.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
gi|334683566|dbj|BAK33151.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
Length=139
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/124 (34%), Positives = 61/124 (50%), Gaps = 4/124 (3%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVI-SQPRYPSPISVA 62
LLDVNVLLAL HV HE A +++ W +C T+ G VR++ ++ + +
Sbjct 2 LLDVNVLLALSWDQHVHHEIAHQRF-AELDT-WNTCPTTEAGLVRLLLTEQVVGRKVIGS 59
Query 63 HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF 122
A+ LA F + S L VID L +QVTD L+ LA +++ + TF
Sbjct 60 EALGQLAAMRGVSGWGFLPDSGS-LAEPVIDTRVLMGRRQVTDLQLVNLAASNNTKLATF 118
Query 123 DQSI 126
D +
Sbjct 119 DAGL 122
>gi|320108460|ref|YP_004184050.1| PIN domain-containing protein family protein [Terriglobus saanensis
SP1PR4]
gi|319926981|gb|ADV84056.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=142
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/127 (31%), Positives = 53/127 (42%), Gaps = 7/127 (5%)
Query 6 DVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVIS-----QPRYPSPIS 60
DVNV LAL H A+ W I C +TQ GF+R+++ Q + +
Sbjct 8 DVNVWLALTGETHEHSRPAQIWYGTLISETLLFCRMTQLGFLRILTNKTAMQADVKTNLQ 67
Query 61 VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV 120
+ RY E + S I + SPK DAYL A AV R V
Sbjct 68 ALRIYQQWIQTDGARYREEPDNMEAAFAS--IASTTASSPKLWNDAYLSAFAVTAGLRLV 125
Query 121 TFDQSIA 127
TFD+++A
Sbjct 126 TFDRALA 132
>gi|289749117|ref|ZP_06508495.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689704|gb|EFD57133.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=116
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/87 (36%), Positives = 45/87 (52%), Gaps = 7/87 (8%)
Query 41 ITQNGFVRVISQPRYPSPISVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSP 100
+TQ VR + + S S A A D+++ T HEFW +S +V + +
Sbjct 23 MTQGSLVRFLVR----SGQSAAAARDVVSAVQCTSRHEFWPDALSFAGVEV---AGVVGH 75
Query 101 KQVTDAYLLALAVAHDGRFVTFDQSIA 127
+QVTDAYL LA +HDG+ T D +A
Sbjct 76 RQVTDAYLAQLARSHDGQLATLDSGLA 102
>gi|116073603|ref|ZP_01470865.1| hypothetical protein RS9916_34172 [Synechococcus sp. RS9916]
gi|116068908|gb|EAU74660.1| hypothetical protein RS9916_34172 [Synechococcus sp. RS9916]
Length=144
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/139 (29%), Positives = 61/139 (44%), Gaps = 17/139 (12%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-----YPSP 58
L D+NV LAL+ H H A A+ Q + C +T G VR++ QP+ +
Sbjct 7 LPDLNVWLALVSPTHQHHSSAVAYWEEQASQQVLFCTVTALGLVRLVMQPKVMGDAALTA 66
Query 59 ISVAHAIDLLARATHTRY----HEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVA 114
+ + +D + Y E W ++ R SP+ TDA+L ALA+
Sbjct 67 AAASALLDQFVQQPGVSYAQPSSEGWDVFHGLM------RQAELSPRLCTDAHLAALAIT 120
Query 115 HDGRFVTFDQSIALTAVPG 133
+ R V+FD+ L PG
Sbjct 121 NQWRLVSFDRDFQL--FPG 137
>gi|87123096|ref|ZP_01078947.1| hypothetical protein RS9917_04535 [Synechococcus sp. RS9917]
gi|86168816|gb|EAQ70072.1| hypothetical protein RS9917_04535 [Synechococcus sp. RS9917]
Length=144
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/130 (30%), Positives = 58/130 (45%), Gaps = 11/130 (8%)
Query 4 LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISVA 62
L D+NV LAL DH H+ A A+ G+ C +T G VR++SQ + + + A
Sbjct 7 LPDLNVWLALATADHKHHDHAVAYWEGEAAEQVLFCTVTALGLVRLVSQAKVMGAAVKSA 66
Query 63 HAIDLLARATHTRYHEFWSCTVSILDSKVID------RSRLHSPKQVTDAYLLALAVAHD 116
L RA + + ++ S D H + TD YL ALA+++
Sbjct 67 RDASELLRA----FCQLEGVGMATPTSNGWDVFHQLMAGGNHPARLCTDTYLAALAISNG 122
Query 117 GRFVTFDQSI 126
R V+FD+
Sbjct 123 WRLVSFDRDF 132
Lambda K H
0.325 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129798780480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40