BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3320c

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610456|ref|NP_217837.1|  hypothetical protein Rv3320c [Mycob...   289    9e-77
gi|340628304|ref|YP_004746756.1|  hypothetical protein MCAN_33461...   288    2e-76
gi|289747139|ref|ZP_06506517.1|  conserved hypothetical protein [...   264    4e-69
gi|206601848|gb|EDZ38331.1|  Hypothetical protein CGL2_11278040 [...   159    2e-37
gi|256826277|ref|YP_003150237.1|  nucleic acid-binding protein [K...   134    3e-30
gi|121595342|ref|YP_987238.1|  PilT domain-containing protein [Ac...   134    3e-30
gi|87123276|ref|ZP_01079127.1|  hypothetical protein RS9917_05435...   127    4e-28
gi|114331350|ref|YP_747572.1|  PilT domain-containing protein [Ni...   126    1e-27
gi|134291479|ref|YP_001115248.1|  PilT domain-containing protein ...   124    7e-27
gi|116624591|ref|YP_826747.1|  PilT domain-containing protein [Ca...   117    7e-25
gi|344199817|ref|YP_004784143.1|  PIN domain-containing protein f...   115    2e-24
gi|330818818|ref|YP_004351035.1|  PilT domain-containing protein ...   114    5e-24
gi|333815879|gb|AEG08546.1|  PIN domain protein family protein [S...   111    3e-23
gi|304413692|ref|ZP_07395136.1|  PIN domain-containing addiction ...   111    4e-23
gi|254420497|ref|ZP_05034221.1|  Mycobacterium tuberculosis PIN d...   110    6e-23
gi|334319720|ref|YP_004556349.1|  PIN domain-containing protein f...   109    2e-22
gi|241518561|ref|YP_002979189.1|  PIN domain protein family prote...   108    3e-22
gi|113953974|ref|YP_729372.1|  hypothetical protein sync_0135 [Sy...   107    6e-22
gi|225874392|ref|YP_002755851.1|  Mycobacterium tuberculosis PIN ...   106    1e-21
gi|87123102|ref|ZP_01078953.1|  hypothetical protein RS9917_04565...   105    2e-21
gi|317967919|ref|ZP_07969309.1|  hypothetical protein SCB02_00127...   102    2e-20
gi|294339103|emb|CAZ87457.1|  conserved hypothetical protein; put...   101    3e-20
gi|24214369|ref|NP_711850.1|  hypothetical protein LA_1669 [Lepto...   100    6e-20
gi|45657964|ref|YP_002050.1|  hypothetical protein LIC12116 [Lept...  99.8    1e-19
gi|124515583|gb|EAY57093.1|  conserved hypothetical protein [Lept...  86.7    1e-15
gi|15609667|ref|NP_217046.1|  hypothetical protein Rv2530c [Mycob...  81.3    5e-14
gi|320109069|ref|YP_004184659.1|  PIN domain-containing protein f...  79.0    2e-13
gi|240169388|ref|ZP_04748047.1|  hypothetical protein MkanA1_0874...  78.6    3e-13
gi|15842022|ref|NP_337059.1|  hypothetical protein MT2569 [Mycoba...  75.9    2e-12
gi|15609631|ref|NP_217010.1|  hypothetical protein Rv2494 [Mycoba...  75.9    2e-12
gi|254232624|ref|ZP_04925951.1|  conserved hypothetical protein [...  75.1    3e-12
gi|336179654|ref|YP_004585029.1|  PIN domain-containing protein f...  74.7    4e-12
gi|15607757|ref|NP_215131.1|  hypothetical protein Rv0617 [Mycoba...  74.3    5e-12
gi|289758626|ref|ZP_06518004.1|  conserved hypothetical protein [...  73.9    6e-12
gi|269954934|ref|YP_003324723.1|  PIN domain-containing protein f...  71.2    5e-11
gi|326772971|ref|ZP_08232255.1|  toxin-antitoxin system, toxin co...  68.6    3e-10
gi|336120816|ref|YP_004575602.1|  hypothetical protein MLP_51850 ...  64.3    5e-09
gi|218459869|ref|ZP_03499960.1|  hypothetical protein RetlK5_1036...  64.3    6e-09
gi|16264146|ref|NP_436938.1|  hypothetical protein SM_b20412 [Sin...  60.1    1e-07
gi|324997204|ref|ZP_08118316.1|  toxin [Pseudonocardia sp. P1]        53.9    8e-06
gi|262201135|ref|YP_003272343.1|  PIN domain-containing protein f...  53.5    1e-05
gi|190895067|ref|YP_001985360.1|  hypothetical protein RHECIAT_PC...  51.2    5e-05
gi|340358885|ref|ZP_08681388.1|  PIN family toxin-antitoxin syste...  51.2    5e-05
gi|16264145|ref|NP_436937.1|  hypothetical protein SM_b20411 [Sin...  49.7    1e-04
gi|333967818|gb|AEG34582.1|  PIN domain protein family protein [T...  47.8    6e-04
gi|336115788|ref|YP_004570554.1|  hypothetical protein MLP_01370 ...  46.2    0.001
gi|320108460|ref|YP_004184050.1|  PIN domain-containing protein f...  45.8    0.002
gi|289749117|ref|ZP_06508495.1|  conserved hypothetical protein [...  45.4    0.003
gi|116073603|ref|ZP_01470865.1|  hypothetical protein RS9916_3417...  44.7    0.004
gi|87123096|ref|ZP_01078947.1|  hypothetical protein RS9917_04535...  44.7    0.004


>gi|15610456|ref|NP_217837.1| hypothetical protein Rv3320c [Mycobacterium tuberculosis H37Rv]
 gi|15842912|ref|NP_337949.1| hypothetical protein MT3421 [Mycobacterium tuberculosis CDC1551]
 gi|31794501|ref|NP_856994.1| hypothetical protein Mb3349c [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=142

 Score =  289 bits (740),  Expect = 9e-77, Method: Compositional matrix adjust.
 Identities = 142/142 (100%), Positives = 142/142 (100%), Gaps = 0/142 (0%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS
Sbjct  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
            VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV
Sbjct  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120

Query  121  TFDQSIALTAVPGATKQHLATL  142
            TFDQSIALTAVPGATKQHLATL
Sbjct  121  TFDQSIALTAVPGATKQHLATL  142


>gi|340628304|ref|YP_004746756.1| hypothetical protein MCAN_33461 [Mycobacterium canettii CIPT 
140010059]
 gi|340006494|emb|CCC45677.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=142

 Score =  288 bits (736),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 141/142 (99%), Positives = 142/142 (100%), Gaps = 0/142 (0%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS
Sbjct  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
            VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV
Sbjct  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120

Query  121  TFDQSIALTAVPGATKQHLATL  142
            TFDQ+IALTAVPGATKQHLATL
Sbjct  121  TFDQAIALTAVPGATKQHLATL  142


>gi|289747139|ref|ZP_06506517.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289687667|gb|EFD55155.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=202

 Score =  264 bits (674),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 127/127 (100%), Positives = 127/127 (100%), Gaps = 0/127 (0%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS
Sbjct  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
            VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV
Sbjct  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120

Query  121  TFDQSIA  127
            TFDQSIA
Sbjct  121  TFDQSIA  127


>gi|206601848|gb|EDZ38331.1| Hypothetical protein CGL2_11278040 [Leptospirillum sp. Group 
II '5-way CG']
Length=142

 Score =  159 bits (401),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 75/142 (53%), Positives = 96/142 (68%), Gaps = 0/142 (0%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            MR+LLD+NVL+ALLD DHV H  AR W +     GWASC +TQNG +R++S P YP+PIS
Sbjct  1    MRSLLDINVLIALLDSDHVSHHTAREWFSLHATDGWASCPLTQNGCMRIMSHPNYPNPIS  60

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
            ++   + L+ A  +  H+FW   VS LD+ V D +R+H P Q+TD YLLALA+ H GRFV
Sbjct  61   ISRIRERLSEAASSSLHQFWPDDVSFLDAGVADTARIHGPHQITDLYLLALAIRHKGRFV  120

Query  121  TFDQSIALTAVPGATKQHLATL  142
            TFD SI  +AV G    HL  L
Sbjct  121  TFDGSIVTSAVQGFEGHHLVVL  142


>gi|256826277|ref|YP_003150237.1| nucleic acid-binding protein [Kytococcus sedentarius DSM 20547]
 gi|256689670|gb|ACV07472.1| predicted nucleic acid-binding protein, contains PIN domain [Kytococcus 
sedentarius DSM 20547]
Length=147

 Score =  134 bits (338),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 76/141 (54%), Positives = 90/141 (64%), Gaps = 3/141 (2%)

Query  3    ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVA  62
            ALLDVN L+ALLD DH DHE A  W   ++  GWA+CA TQ GF+RVISQP YPSPI+V 
Sbjct  9    ALLDVNTLIALLDIDHRDHEAAHRWAEERLSNGWATCATTQMGFLRVISQPGYPSPITVD  68

Query  63   HAIDLLARATHTRYHEFWSCTVSILDSKV-IDRSRLHSPKQVTDAYLLALAVAHDGRFVT  121
             A  LL RAT    HE+WS         V +D    H  +Q+TDAYLLALAV  +G  VT
Sbjct  69   EAGRLLRRATDHPSHEYWSSEPQPCAGSVSLDVITGH--RQITDAYLLALAVHQNGCLVT  126

Query  122  FDQSIALTAVPGATKQHLATL  142
            FD+ I    VPGA ++HL  L
Sbjct  127  FDRRITTRHVPGAGQEHLVRL  147


>gi|121595342|ref|YP_987238.1| PilT domain-containing protein [Acidovorax sp. JS42]
 gi|120607422|gb|ABM43162.1| PIN domain family protein [Acidovorax sp. JS42]
Length=142

 Score =  134 bits (338),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 69/142 (49%), Positives = 91/142 (65%), Gaps = 0/142 (0%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            MRALLDVNVL+ALLD  H+ H+RA  W+   +  GWASC +TQNG +R+++QP YP  + 
Sbjct  1    MRALLDVNVLIALLDAAHIHHQRASQWLEQSLHHGWASCPLTQNGCLRIMAQPAYPQALP  60

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
            +A     L +A  T  H F +   S+LD+  +   +L   +QVTDAYLL LAV H  RFV
Sbjct  61   LAAVAQRLGQAAATPAHLFIADDYSLLDADSLHWPQLLGHRQVTDAYLLGLAVRHGCRFV  120

Query  121  TFDQSIALTAVPGATKQHLATL  142
            +FD  + L AVPGA  +HL  L
Sbjct  121  SFDARVNLAAVPGAKAEHLWVL  142


>gi|87123276|ref|ZP_01079127.1| hypothetical protein RS9917_05435 [Synechococcus sp. RS9917]
 gi|86168996|gb|EAQ70252.1| hypothetical protein RS9917_05435 [Synechococcus sp. RS9917]
Length=143

 Score =  127 bits (320),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 65/142 (46%), Positives = 88/142 (62%), Gaps = 0/142 (0%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            MRALLD+NV++ALLD  H  H  A  W++     GWASC I+QNG +R++SQP YP+   
Sbjct  1    MRALLDINVIIALLDGQHSLHSTASQWLSHHAAAGWASCPISQNGVIRIMSQPSYPNAQP  60

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
             A     LA A     H+FW   +S+LD + +    L  P+Q+TDAYLLA+AVA+DG  V
Sbjct  61   PAAIASRLAEACRHPSHQFWGGALSLLDPRHLKWHCLLGPRQITDAYLLAVAVANDGCLV  120

Query  121  TFDQSIALTAVPGATKQHLATL  142
            +FD+ I    VPGAT   +  +
Sbjct  121  SFDRRIHHDLVPGATADQIVVV  142


>gi|114331350|ref|YP_747572.1| PilT domain-containing protein [Nitrosomonas eutropha C91]
 gi|114308364|gb|ABI59607.1| PIN domain family protein [Nitrosomonas eutropha C91]
Length=142

 Score =  126 bits (316),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 65/142 (46%), Positives = 91/142 (65%), Gaps = 0/142 (0%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            MRALLDVNVL+ALLD  HV H RA  W+  +I  GWASC +TQNG +R+++QP YP  +S
Sbjct  1    MRALLDVNVLIALLDAGHVHHVRASQWLEQEIIHGWASCPLTQNGCLRIMTQPAYPEALS  60

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
            +A     LA+A     H F +   S+LD++ ++  ++    Q+ D+YLL LAV H  RFV
Sbjct  61   LAAVASRLAQAIAHPTHAFVADDYSLLDAEQVNWQQMLGHWQIIDSYLLGLAVRHHCRFV  120

Query  121  TFDQSIALTAVPGATKQHLATL  142
            +FD  +    V GA++QH+  L
Sbjct  121  SFDSRLNPDIVSGASQQHIVIL  142


>gi|134291479|ref|YP_001115248.1| PilT domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134134668|gb|ABO58993.1| PIN domain family protein [Burkholderia vietnamiensis G4]
Length=144

 Score =  124 bits (310),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 69/139 (50%), Positives = 86/139 (62%), Gaps = 9/139 (6%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP----SPI  59
            LLDVNVL+ALLD  HV HE A AW        WA+C +T+NG +R+I  P+YP    SP 
Sbjct  5    LLDVNVLIALLDPAHVQHEPAHAWFGRVGHSAWATCPLTENGVLRIIGNPKYPNTMVSPA  64

Query  60   SVAH-AIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGR  118
            SVA   + L + A HT    FWS  VS+LD K +D +RL S  Q+TD YLLALA AH G+
Sbjct  65   SVAPLVVQLRSHAGHT----FWSDDVSLLDEKHVDATRLLSSAQLTDTYLLALARAHKGK  120

Query  119  FVTFDQSIALTAVPGATKQ  137
              TFD+ + + AVP   K 
Sbjct  121  LATFDRRLVVDAVPNGGKH  139


>gi|116624591|ref|YP_826747.1| PilT domain-containing protein [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116227753|gb|ABJ86462.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=147

 Score =  117 bits (292),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 64/141 (46%), Positives = 81/141 (58%), Gaps = 1/141 (0%)

Query  3    ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVA  62
            ALLDVNVL+AL D  H+DH  A  W     +RGWA+C IT NG VR++S P YP   +  
Sbjct  4    ALLDVNVLIALFDPAHIDHVEAHRWFGLNRKRGWATCPITINGCVRILSSPGYPGINASP  63

Query  63   HAIDLLARATHTRY-HEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT  121
              I    +A+     H FW  +VS+LD  +   S +   K +TD YLL LAV + GR  T
Sbjct  64   AEITARMQASFANVDHHFWPDSVSLLDEALFRPSMITGHKNITDVYLLGLAVRNHGRLAT  123

Query  122  FDQSIALTAVPGATKQHLATL  142
            FDQSI L AV GA   +L  +
Sbjct  124  FDQSIPLKAVHGAAPGNLVVI  144


>gi|344199817|ref|YP_004784143.1| PIN domain-containing protein family protein [Acidithiobacillus 
ferrivorans SS3]
 gi|343775261|gb|AEM47817.1| PIN domain protein family protein [Acidithiobacillus ferrivorans 
SS3]
Length=142

 Score =  115 bits (288),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 59/132 (45%), Positives = 80/132 (61%), Gaps = 1/132 (0%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI  59
            M  LLDVNVL+AL+D  HV H+ A  W     +  WA+C +T+NG +R++  PRYP SP 
Sbjct  1    MTFLLDVNVLIALIDPMHVQHDMAHEWFAAHGQPAWATCPLTENGVLRIVGHPRYPNSPG  60

Query  60   SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF  119
            + A    L+     +  H FW   +S+LD   ID SRL +  Q+TD+YLLALA AH+G+ 
Sbjct  61   TPAAVAPLIQGLRASPGHVFWPDDISLLDVDHIDASRLLTSGQITDSYLLALACAHEGQL  120

Query  120  VTFDQSIALTAV  131
             TFD  +   AV
Sbjct  121  ATFDHRLVTNAV  132


>gi|330818818|ref|YP_004351035.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
 gi|327374360|gb|AEA65712.1| PilT domain-containing protein [Burkholderia gladioli BSR3]
Length=151

 Score =  114 bits (285),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 58/138 (43%), Positives = 81/138 (59%), Gaps = 1/138 (0%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            M  LLDVNVL+ALLD  HV HE A  W        WA+C +T+NG +R+I  PRYP+ + 
Sbjct  9    MTYLLDVNVLIALLDAGHVQHEAAHEWFGSAAHAAWATCPLTENGVLRIIGNPRYPNTLG  68

Query  61   VAHAI-DLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF  119
               A+  L+ +      H FW   +S+L+ + +D SR+ +  QVTD YLLALA  H G+ 
Sbjct  69   TPAAVAPLVTQLRAHPGHTFWWDDLSLLNPEQVDVSRILATDQVTDTYLLALARVHGGKL  128

Query  120  VTFDQSIALTAVPGATKQ  137
             TFD+ + + AVP   + 
Sbjct  129  ATFDRRLVVDAVPDGARH  146


>gi|333815879|gb|AEG08546.1| PIN domain protein family protein [Sinorhizobium meliloti BL225C]
Length=147

 Score =  111 bits (278),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 59/141 (42%), Positives = 84/141 (60%), Gaps = 2/141 (1%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI  59
            M  LLDVNVL+AL+D  H+ H+ A  W     +  WA+C IT+NG +R++  P YP SP 
Sbjct  1    MTFLLDVNVLIALIDPSHIGHDDAHEWFASIGQTAWATCPITENGVIRIVGNPEYPNSPG  60

Query  60   SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF  119
            S   A++++A+      H FW   VS++ S  I  S++ +  QVTD YLLALA A  G+ 
Sbjct  61   SPLPAMEIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKL  120

Query  120  VTFDQSIALTAV-PGATKQHL  139
             TFD+ ++  AV  G +  HL
Sbjct  121  ATFDRKLSAAAVTKGNSALHL  141


>gi|304413692|ref|ZP_07395136.1| PIN domain-containing addiction module [Candidatus Regiella insecticola 
LSR1]
 gi|304283783|gb|EFL92177.1| PIN domain-containing addiction module [Candidatus Regiella insecticola 
LSR1]
Length=147

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 61/141 (44%), Positives = 87/141 (62%), Gaps = 3/141 (2%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI  59
            M  LLDVNVL+AL+D  H+ H+ A  W   Q  + WA+C +TQNG +R++   RYP SP 
Sbjct  1    MIFLLDVNVLIALVDPAHIQHDAAHTWFEKQ-GQDWATCPLTQNGVLRIVGHGRYPNSPG  59

Query  60   SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF  119
            + A   +L+        H FW   +S+LD++ +D +RL +  Q+TD+YLLALA AH+G+ 
Sbjct  60   TPAAVAELMTTLCSLPGHCFWPDDISLLDTEKLDATRLLTSAQLTDSYLLALACAHNGQL  119

Query  120  VTFDQSIALTAV-PGATKQHL  139
             TFD+ +   AV  GA   HL
Sbjct  120  ATFDRRLETDAVHNGARSLHL  140


>gi|254420497|ref|ZP_05034221.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp. 
BAL3]
 gi|196186674|gb|EDX81650.1| Mycobacterium tuberculosis PIN domain family [Brevundimonas sp. 
BAL3]
Length=145

 Score =  110 bits (276),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 59/143 (42%), Positives = 84/143 (59%), Gaps = 2/143 (1%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            M  LLDVNVL+AL+D  HV H+ A  W   +    WA+C IT+NG VR++   RY +P+ 
Sbjct  1    MTYLLDVNVLIALVDPRHVFHDTANGWFQREAAGSWATCPITENGLVRIVGNSRYRNPVG  60

Query  61   -VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF  119
              +  + +L        H FW   +S+ D ++ D S L +P+Q+TDAYLLALAV++ GR 
Sbjct  61   PPSEIVRILELLRDMAGHVFWPDAISLADDRLFDPSALTTPEQITDAYLLALAVSNGGRL  120

Query  120  VTFDQSIALTAV-PGATKQHLAT  141
             T D+ ++  AV  G    HL T
Sbjct  121  ATLDRRLSPDAVRDGRAALHLVT  143


>gi|334319720|ref|YP_004556349.1| PIN domain-containing protein family protein [Sinorhizobium meliloti 
AK83]
 gi|334097459|gb|AEG55469.1| PIN domain protein family protein [Sinorhizobium meliloti AK83]
Length=147

 Score =  109 bits (272),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 58/141 (42%), Positives = 83/141 (59%), Gaps = 2/141 (1%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI  59
            M  LLDVNVL+AL+D  H+ H+ A  W     +  WA+C IT+NG +R++  P YP SP 
Sbjct  1    MTFLLDVNVLIALIDPSHIGHDDAHEWFASIGQTTWATCPITENGVIRIVGNPEYPNSPG  60

Query  60   SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF  119
            S    ++++A+      H FW   VS++ S  I  S++ +  QVTD YLLALA A  G+ 
Sbjct  61   SPLPVMEIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKL  120

Query  120  VTFDQSIALTAV-PGATKQHL  139
             TFD+ ++  AV  G +  HL
Sbjct  121  ATFDRKLSAAAVTKGNSALHL  141


>gi|241518561|ref|YP_002979189.1| PIN domain protein family protein [Rhizobium leguminosarum bv. 
trifolii WSM1325]
 gi|240862974|gb|ACS60638.1| PIN domain protein family protein [Rhizobium leguminosarum bv. 
trifolii WSM1325]
Length=147

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 58/143 (41%), Positives = 85/143 (60%), Gaps = 2/143 (1%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI  59
            M  LLDVNVL+AL+D  HV H+ A  W     +  WA+C IT+NG +R++  P+YP SP 
Sbjct  1    MTFLLDVNVLIALIDPGHVAHDDAHEWFAAIGQSAWATCPITENGVIRIVGNPQYPNSPG  60

Query  60   SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF  119
            S +  ++++ +      H FW   VS++ S  I  +++ +  QVTD YLLALA A  G+ 
Sbjct  61   SPSLVMEIVRKLRSLPGHSFWPDDVSLVGSGDIAPAKILTSGQVTDTYLLALAKARGGQL  120

Query  120  VTFDQSIALTAVP-GATKQHLAT  141
             TFD+ ++  AV  G +  HL T
Sbjct  121  ATFDRKLSAAAVTRGNSALHLIT  143


>gi|113953974|ref|YP_729372.1| hypothetical protein sync_0135 [Synechococcus sp. CC9311]
 gi|113881325|gb|ABI46283.1| Mycobacterium tuberculosis PIN domain family subfamily [Synechococcus 
sp. CC9311]
Length=148

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 57/135 (43%), Positives = 75/135 (56%), Gaps = 1/135 (0%)

Query  3    ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPISV  61
            ALLDVNVL+AL+D  HV HE +  W       GWA+C +TQN  +R++  PRYP SP   
Sbjct  6    ALLDVNVLIALIDPQHVHHEPSHRWFQAHGGDGWATCPLTQNALLRILGNPRYPNSPGGP  65

Query  62   AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT  121
            A  +  L        H FW   +S   + V +   L    Q+TD YLL LAV H GR V+
Sbjct  66   AVVMSFLQELLAHPAHVFWPDALSWQATGVFEAEALLHHGQITDTYLLGLAVHHQGRLVS  125

Query  122  FDQSIALTAVPGATK  136
            FD+ ++L AV G  +
Sbjct  126  FDRRLSLRAVRGGEE  140


>gi|225874392|ref|YP_002755851.1| Mycobacterium tuberculosis PIN domain protein [Acidobacterium 
capsulatum ATCC 51196]
 gi|225792658|gb|ACO32748.1| Mycobacterium tuberculosis PIN domain protein [Acidobacterium 
capsulatum ATCC 51196]
Length=146

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 56/136 (42%), Positives = 81/136 (60%), Gaps = 2/136 (1%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRY-PSPISVA  62
            LLDVNVL+A+    HV H RA+ W +     GWA+C +TQ GFVR++S P +  S ++  
Sbjct  5    LLDVNVLVAMFWPSHVHHVRAQQWFSEHSRHGWATCPLTQTGFVRIVSNPAFSKSAVTAR  64

Query  63   HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF  122
             AI +L      R H FW+ +V + ++      RL   KQVTDAYL+ LA  H GR +TF
Sbjct  65   DAIHVLQENLKHRSHVFWADSVGVNEAASFTHDRLIGHKQVTDAYLIGLAHHHQGRLLTF  124

Query  123  DQSIALTAVPGATKQH  138
            D+ +  + +P A ++H
Sbjct  125  DRGLG-SLLPPALQKH  139


>gi|87123102|ref|ZP_01078953.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
 gi|86168822|gb|EAQ70078.1| hypothetical protein RS9917_04565 [Synechococcus sp. RS9917]
Length=149

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 58/133 (44%), Positives = 72/133 (55%), Gaps = 1/133 (0%)

Query  3    ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPISV  61
            ALLDVNVL+ALLD  HV HE A  W       GWA+C +TQN  +R++S PRYP SP   
Sbjct  6    ALLDVNVLIALLDPQHVHHEPAHRWFQANASYGWATCPLTQNALLRILSNPRYPNSPGGP  65

Query  62   AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT  121
            A  + LL        H FW   +S      +    L    Q+TD YLLALAV   G  ++
Sbjct  66   ASVMPLLQGMLSHPGHLFWPDLLSWSTDGELQAELLLHHGQITDTYLLALAVHQGGCLMS  125

Query  122  FDQSIALTAVPGA  134
            FD  ++  AVPG 
Sbjct  126  FDARLSTCAVPGG  138


>gi|317967919|ref|ZP_07969309.1| hypothetical protein SCB02_00127 [Synechococcus sp. CB0205]
Length=144

 Score =  102 bits (253),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 58/128 (46%), Positives = 70/128 (55%), Gaps = 7/128 (5%)

Query  3    ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP----SP  58
            ALLDVNVL+ALLD  HV HE    W   +    WASCA+TQN  +R++  PRYP     P
Sbjct  6    ALLDVNVLIALLDPHHVHHELCHGWFADRGAAPWASCAMTQNAVLRILGNPRYPISPGPP  65

Query  59   ISVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGR  118
             ++A  +D L        HEFW    S+L    I RS L    Q+TD YLLALA  H G 
Sbjct  66   PTIAPHLDSLVEHP---GHEFWDSNPSLLSQGFIARSALIDYAQITDLYLLALARHHGGT  122

Query  119  FVTFDQSI  126
              T D+ I
Sbjct  123  LATLDKRI  130


>gi|294339103|emb|CAZ87457.1| conserved hypothetical protein; putative PIN domain [Thiomonas 
sp. 3As]
Length=143

 Score =  101 bits (252),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 51/129 (40%), Positives = 76/129 (59%), Gaps = 1/129 (0%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVAH  63
            LLDVNVL+AL+D  HV H+ A  W        WA+C +T+NG +R++  PRYP+      
Sbjct  5    LLDVNVLIALIDPAHVQHDAAHHWFAETGSASWATCPLTENGLLRIVGHPRYPNTPGTPA  64

Query  64   AIDLLARATHT-RYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF  122
             + ++ +A      H FW   +S+L+ ++I   RL S  Q+TD+YLLALA  H G+  +F
Sbjct  65   TVAVVLQALRALPGHHFWPDDISLLNPELILTDRLLSHTQITDSYLLALARHHSGKLASF  124

Query  123  DQSIALTAV  131
            D+ +   AV
Sbjct  125  DRKLVADAV  133


>gi|24214369|ref|NP_711850.1| hypothetical protein LA_1669 [Leptospira interrogans serovar 
Lai str. 56601]
 gi|24195304|gb|AAN48868.1| hypothetical protein LA_1669 [Leptospira interrogans serovar 
Lai str. 56601]
Length=144

 Score =  100 bits (249),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 58/140 (42%), Positives = 78/140 (56%), Gaps = 2/140 (1%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI  59
            M+ LLDVNVL++L D +HV HE+A  W   + + GWA+C ITQN  VR++S   YP +P 
Sbjct  1    MKYLLDVNVLISLCDSNHVFHEKAWKWFDRKAKNGWATCPITQNALVRIMSHSSYPGNPG  60

Query  60   SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF  119
             V     +L      + H+F    +SI  S         S KQ+TD YLLAL+V H  +F
Sbjct  61   GVEVVSAILHSLLKVKGHQFIPDNISINSSLFYLNIVSVSSKQITDVYLLALSVHHKVKF  120

Query  120  VTFDQSIALTAVPGATKQHL  139
             TFD  I   +V    K+HL
Sbjct  121  ATFDSKIPYDSVDRG-KEHL  139


>gi|45657964|ref|YP_002050.1| hypothetical protein LIC12116 [Leptospira interrogans serovar 
Copenhageni str. Fiocruz L1-130]
 gi|45601205|gb|AAS70687.1| conserved hypothetical protein [Leptospira interrogans serovar 
Copenhageni str. Fiocruz L1-130]
Length=144

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 58/140 (42%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYP-SPI  59
            M+ LLDVNVL++L D +HV HE+A  W   +   GWA+C ITQN  VR++S   YP +P 
Sbjct  1    MKYLLDVNVLISLCDSNHVFHEKAWKWFDRKARNGWATCPITQNALVRIMSHSSYPGNPG  60

Query  60   SVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF  119
             V     +L      + H+F    +SI  S         S KQ+TD YLLAL+V H  +F
Sbjct  61   GVEVVSAILHSLLKVKGHQFIPDNISINSSLFYLNIVSVSSKQITDVYLLALSVHHKVKF  120

Query  120  VTFDQSIALTAVPGATKQHL  139
             TFD  I   +V    K+HL
Sbjct  121  ATFDSKIPYDSVDRG-KEHL  139


>gi|124515583|gb|EAY57093.1| conserved hypothetical protein [Leptospirillum rubarum]
Length=193

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 65/115 (57%), Gaps = 0/115 (0%)

Query  2    RALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISV  61
            R+LLD+NVL+ LLD DHV H  +R  ++     GW+SC +T NG + ++S P  P  I V
Sbjct  70   RSLLDINVLIVLLDSDHVFHSASREGLSLHATDGWSSCPLTDNGCMCIMSCPNDPDTIPV  129

Query  62   AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHD  116
            +   D L+ A     H+FW   V  LD+ V   SR H P+Q+TD   L+ +   D
Sbjct  130  SRIRDRLSEAASGPPHQFWPEDVHFLDAGVAVASRTHGPRQITDLSWLSPSGRRD  184


>gi|15609667|ref|NP_217046.1| hypothetical protein Rv2530c [Mycobacterium tuberculosis H37Rv]
 gi|15842064|ref|NP_337101.1| hypothetical protein MT2605 [Mycobacterium tuberculosis CDC1551]
 gi|31793711|ref|NP_856204.1| hypothetical protein Mb2559c [Mycobacterium bovis AF2122/97]
 81 more sequence titles
 Length=139

 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 52/124 (42%), Positives = 69/124 (56%), Gaps = 3/124 (2%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            M ALLDVNVL+AL   +HV H  A+ W T     GWA+  IT+ G+VR IS  R    +S
Sbjct  1    MTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVR-ISSNRSVMQVS  59

Query  61   VAHAIDL--LARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGR  118
               AI +  LA  T    H FW   V ++     DR  + + ++VTD +L+ALA  + GR
Sbjct  60   TTPAIAIAQLAAMTSLAGHTFWPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGR  119

Query  119  FVTF  122
             VTF
Sbjct  120  LVTF  123


>gi|320109069|ref|YP_004184659.1| PIN domain-containing protein family protein [Terriglobus saanensis 
SP1PR4]
 gi|319927590|gb|ADV84665.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=147

 Score = 79.0 bits (193),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 49/123 (40%), Positives = 62/123 (51%), Gaps = 2/123 (1%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVAH  63
            LLDVNV +ALL  DH  H+   AW        WA C  T+ GF+R  + PR P  I++  
Sbjct  9    LLDVNVFVALLSEDHTHHQLVTAWFNTP-SLLWAICPFTEAGFLRNATAPR-PGQITMTE  66

Query  64   AIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTFD  123
            A  +LAR      + +   T           +RL+  KQVTDAYLL LAV  D   VT D
Sbjct  67   ATAVLARMAQVPGYHYLPITADWRSLCSPFSTRLYGTKQVTDAYLLGLAVREDLVLVTMD  126

Query  124  QSI  126
            + I
Sbjct  127  KGI  129


>gi|240169388|ref|ZP_04748047.1| hypothetical protein MkanA1_08748 [Mycobacterium kansasii ATCC 
12478]
Length=133

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 46/127 (37%), Positives = 73/127 (58%), Gaps = 8/127 (6%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            M ALLD NVL+AL+  +HV H+ A AW++ + + G+A+C ITQ   VR + +   P+ + 
Sbjct  1    MIALLDSNVLIALVVAEHVHHDVAAAWLSAR-DNGFATCPITQGSLVRFLMRTGQPAAV-  58

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
               A +++      + HEFW  +VS  D ++     +   +QVTDAYL  LA + +G+  
Sbjct  59   ---AREVVGAVETAKRHEFWPDSVSFADVEI---GGVVGHRQVTDAYLAQLARSRNGQLA  112

Query  121  TFDQSIA  127
            T D  +A
Sbjct  113  TLDSGLA  119


>gi|15842022|ref|NP_337059.1| hypothetical protein MT2569 [Mycobacterium tuberculosis CDC1551]
 gi|254366798|ref|ZP_04982840.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|13882299|gb|AAK46873.1| hypothetical protein MT2569 [Mycobacterium tuberculosis CDC1551]
 gi|134152308|gb|EBA44353.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|323718902|gb|EGB28056.1| toxin protein [Mycobacterium tuberculosis CDC1551A]
Length=141

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 52/125 (42%), Positives = 68/125 (55%), Gaps = 4/125 (3%)

Query  3    ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV  61
            ALLDVN L+AL    H+ H R R W T     GWA+C +T+ GFVRV + P+  PS I +
Sbjct  2    ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI  61

Query  62   AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT  121
            A A  +L        H F +  VS++D  V     +   +QVTDA+LL LA     R VT
Sbjct  62   ADARPVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT  118

Query  122  FDQSI  126
            FD  +
Sbjct  119  FDAGV  123


>gi|15609631|ref|NP_217010.1| hypothetical protein Rv2494 [Mycobacterium tuberculosis H37Rv]
 gi|31793674|ref|NP_856167.1| hypothetical protein Mb2522 [Mycobacterium bovis AF2122/97]
 gi|121638376|ref|YP_978600.1| hypothetical protein BCG_2514 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 68 more sequence titles
 Length=141

 Score = 75.9 bits (185),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 52/125 (42%), Positives = 68/125 (55%), Gaps = 4/125 (3%)

Query  3    ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV  61
            ALLDVN L+AL    H+ H R R W T     GWA+C +T+ GFVRV + P+  PS I +
Sbjct  2    ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI  61

Query  62   AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT  121
            A A  +L        H F +  VS++D  V     +   +QVTDA+LL LA     R VT
Sbjct  62   ADARRVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT  118

Query  122  FDQSI  126
            FD  +
Sbjct  119  FDAGV  123


>gi|254232624|ref|ZP_04925951.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|124601683|gb|EAY60693.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=141

 Score = 75.1 bits (183),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 51/125 (41%), Positives = 68/125 (55%), Gaps = 4/125 (3%)

Query  3    ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV  61
            AL+DVN L+AL    H+ H R R W T     GWA+C +T+ GFVRV + P+  PS I +
Sbjct  2    ALIDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRVSTNPKVLPSAIGI  61

Query  62   AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT  121
            A A  +L        H F +  VS++D  V     +   +QVTDA+LL LA     R VT
Sbjct  62   ADARPVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT  118

Query  122  FDQSI  126
            FD  +
Sbjct  119  FDAGV  123


>gi|336179654|ref|YP_004585029.1| PIN domain-containing protein family protein [Frankia symbiont 
of Datisca glomerata]
 gi|334860634|gb|AEH11108.1| PIN domain protein family protein [Frankia symbiont of Datisca 
glomerata]
Length=131

 Score = 74.7 bits (182),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 45/127 (36%), Positives = 68/127 (54%), Gaps = 8/127 (6%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            M  LLD NVL+ L+  DHV H+ A AW+ G   R +A+C IT+   VR++ +    +  +
Sbjct  1    MATLLDANVLITLIVTDHVHHDAAEAWLAGTAGR-FATCPITEGSLVRLLIREGQSAQTA  59

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
             A    +++       HEFW   VS      +  + +   +QVTDAYL  LA  H+GR  
Sbjct  60   TA----VVSAIAGDSRHEFWPDEVSY---SAVSMTGVIGHRQVTDAYLAYLARTHNGRLA  112

Query  121  TFDQSIA  127
            +F+Q +A
Sbjct  113  SFNQGLA  119


>gi|15607757|ref|NP_215131.1| hypothetical protein Rv0617 [Mycobacterium tuberculosis H37Rv]
 gi|15840020|ref|NP_335057.1| hypothetical protein MT0646 [Mycobacterium tuberculosis CDC1551]
 gi|31791800|ref|NP_854293.1| hypothetical protein Mb0634 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=133

 Score = 74.3 bits (181),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 48/127 (38%), Positives = 70/127 (56%), Gaps = 8/127 (6%)

Query  1    MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPIS  60
            M  LLD NVL+AL+  +HV H+ A  W+    + G+A+C +TQ   VR + +    S  S
Sbjct  1    MTVLLDANVLIALVVAEHVHHDAAADWLMAS-DTGFATCPMTQGSLVRFLVR----SGQS  55

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
             A A D+++    T  HEFW   +S    +V   + +   +QVTDAYL  LA +HDG+  
Sbjct  56   AAAARDVVSAVQCTSRHEFWPDALSFAGVEV---AGVVGHRQVTDAYLAQLARSHDGQLA  112

Query  121  TFDQSIA  127
            T D  +A
Sbjct  113  TLDSGLA  119


>gi|289758626|ref|ZP_06518004.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294994398|ref|ZP_06800089.1| toxin [Mycobacterium tuberculosis 210]
 gi|289714190|gb|EFD78202.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|326904108|gb|EGE51041.1| toxin [Mycobacterium tuberculosis W-148]
 gi|339295377|gb|AEJ47488.1| hypothetical protein CCDC5079_2298 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339298997|gb|AEJ51107.1| hypothetical protein CCDC5180_2270 [Mycobacterium tuberculosis 
CCDC5180]
Length=141

 Score = 73.9 bits (180),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 51/125 (41%), Positives = 67/125 (54%), Gaps = 4/125 (3%)

Query  3    ALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISV  61
            ALLDVN L+AL    H+ H R R W T     GWA+C +T+ GFVR  + P+  PS I +
Sbjct  2    ALLDVNALVALAWDSHIHHARIREWFTANATLGWATCPLTEAGFVRASTNPKVLPSAIGI  61

Query  62   AHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVT  121
            A A  +L        H F +  VS++D  V     +   +QVTDA+LL LA     R VT
Sbjct  62   ADARRVLVALRAVGGHRFLADDVSLVDDDV---PLIVGYRQVTDAHLLTLARRRGVRLVT  118

Query  122  FDQSI  126
            FD  +
Sbjct  119  FDAGV  123


>gi|269954934|ref|YP_003324723.1| PIN domain-containing protein family protein [Xylanimonas cellulosilytica 
DSM 15894]
 gi|269303615|gb|ACZ29165.1| PIN domain protein family protein [Xylanimonas cellulosilytica 
DSM 15894]
Length=141

 Score = 71.2 bits (173),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 58/143 (41%), Positives = 75/143 (53%), Gaps = 11/143 (7%)

Query  4    LLDVNVLLALLDRDHVDHERARAWI--TGQIERGWASCAITQNGFVRVISQPR-YPSPIS  60
            L DVNVL+AL   DHV H  A +W+   GQ    +A+ A+T+ GFVRV   P     P S
Sbjct  5    LPDVNVLIALHFEDHVHHVPAMSWLRKGGQ----FATTALTEAGFVRVSMNPAIVGEPFS  60

Query  61   VAHAIDLLARA-THTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRF  119
               A++ L R   HTR   FW+   S+  S   DR  L   KQ TD +LL LA + DG  
Sbjct  61   GVEALEALRRLRGHTRA-TFWADDTSLATSPFADRV-LSGHKQTTDLHLLNLAASRDGVL  118

Query  120  VTFDQSIALTAVPGATKQHLATL  142
            VTFD  +    +  A ++HL  L
Sbjct  119  VTFDSKLG-APLRQAERRHLDVL  140


>gi|326772971|ref|ZP_08232255.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces 
viscosus C505]
 gi|326637603|gb|EGE38505.1| toxin-antitoxin system, toxin component, PIN family [Actinomyces 
viscosus C505]
Length=146

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 47/125 (38%), Positives = 63/125 (51%), Gaps = 4/125 (3%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPS-PISVA  62
            LLDVNVL+AL   +H  HE   AW  G  +  WA+C+ITQ  ++R++  PR     I+ A
Sbjct  9    LLDVNVLVALSLPNHAHHEVVSAWFDGVDQ--WATCSITQAAYLRLLMNPRVTGFEIAAA  66

Query  63   HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF  122
              +  L   T    H F        +   I  SRL  PKQVTD +L+ LA  H+    T 
Sbjct  67   DVLSGLGGLTSLDDHVFLVDDAPPAEPS-ISFSRLKGPKQVTDLHLVDLAARHNAVLATM  125

Query  123  DQSIA  127
            D  +A
Sbjct  126  DGRMA  130


>gi|336120816|ref|YP_004575602.1| hypothetical protein MLP_51850 [Microlunatus phosphovorus NM-1]
 gi|334688614|dbj|BAK38199.1| hypothetical protein MLP_51850 [Microlunatus phosphovorus NM-1]
Length=148

 Score = 64.3 bits (155),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 49/130 (38%), Positives = 71/130 (55%), Gaps = 4/130 (3%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPI-SVA  62
            L DVN+L+ALL   HV H +A+AW T  +ER +A+  IT++GF+R+   P     + S+ 
Sbjct  13   LPDVNLLVALLHPAHVHHLQAQAWFTS-VER-FATTPITESGFIRMALNPAVAGQVTSLD  70

Query  63   HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF  122
             A+  L      +  E+ +   S L    ID   L   +QVTD +L+ LA  H  R VTF
Sbjct  71   DAMSSLNSVRADKRVEYVADDTS-LALPTIDLVGLVGFRQVTDFHLVNLAACHSARLVTF  129

Query  123  DQSIALTAVP  132
            D+ +A T  P
Sbjct  130  DRKLAPTLAP  139


>gi|218459869|ref|ZP_03499960.1| hypothetical protein RetlK5_10369 [Rhizobium etli Kim 5]
Length=100

 Score = 64.3 bits (155),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 33/85 (39%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query  48   RVISQPRYP-SPISVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDA  106
            R++  P+YP SP S A  ++++ +      H FW   VS++ S  I  +++ +P QVTD 
Sbjct  1    RIVGHPKYPNSPGSPALVMEIVRKLRSLPGHSFWPDDVSLVGSGDIAPTKILTPGQVTDT  60

Query  107  YLLALAVAHDGRFVTFDQSIALTAV  131
            YLLALA A  G+  TFD+ ++  AV
Sbjct  61   YLLALAKARGGQLATFDRKLSAAAV  85


>gi|16264146|ref|NP_436938.1| hypothetical protein SM_b20412 [Sinorhizobium meliloti 1021]
 gi|15140271|emb|CAC48798.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti 1021]
Length=54

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 24/54 (45%), Positives = 34/54 (63%), Gaps = 0/54 (0%)

Query  1   MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR  54
           M  LLDVNVL+AL+D  H+ H+ A  W     +  WA+C IT+NG +R++  P 
Sbjct  1   MTFLLDVNVLIALIDPSHIGHDDAHEWFASIGQTAWATCPITENGVIRIVGNPE  54


>gi|324997204|ref|ZP_08118316.1| toxin [Pseudonocardia sp. P1]
Length=141

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 47/127 (38%), Positives = 66/127 (52%), Gaps = 14/127 (11%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVR-VISQPRYPSPISVA  62
            LLD NVL+AL   +H  H+RA AW   +IER +A C + +   VR ++     PS     
Sbjct  5    LLDANVLIALTVTEHEHHDRASAW-GARIER-FALCPVVEGALVRFLVRAGETPS-----  57

Query  63   HAIDLLARATHTRYH-EFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDG-RFV  120
             A  LL RA H     EFW  ++S  D+++     +   +QVTDAYL +L  A  G    
Sbjct  58   TATGLL-RAVHALPGCEFWPDSLSFADARL---GHVGGHRQVTDAYLTSLVAAVPGASPA  113

Query  121  TFDQSIA  127
            T D+ +A
Sbjct  114  TLDEGLA  120


>gi|262201135|ref|YP_003272343.1| PIN domain-containing protein family protein [Gordonia bronchialis 
DSM 43247]
 gi|262084482|gb|ACY20450.1| PIN domain protein family protein [Gordonia bronchialis DSM 43247]
Length=144

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 44/130 (34%), Positives = 64/130 (50%), Gaps = 4/130 (3%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVI-SQPRYPSPISVA  62
            LLD+NVL+AL    HV H  A        E  W++C +T+ G VRV+ ++      ++ A
Sbjct  7    LLDINVLVALSWDQHVHHGVAHERFAQLTE--WSTCPVTEAGLVRVLMTESAVGRVVTGA  64

Query  63   HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF  122
             A+  LA         F     S+ DS VID   L   +QVTD +L+ LA  +  +  TF
Sbjct  65   EALGQLAALRTVTGWGFLHDDASLADS-VIDLRVLMGRRQVTDLHLVNLAARNGRKLATF  123

Query  123  DQSIALTAVP  132
            D  +  + VP
Sbjct  124  DAGLRESLVP  133


>gi|190895067|ref|YP_001985360.1| hypothetical protein RHECIAT_PC0000733 [Rhizobium etli CIAT 652]
 gi|190700728|gb|ACE94810.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length=82

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 25/55 (46%), Positives = 35/55 (64%), Gaps = 0/55 (0%)

Query  77   HEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTFDQSIALTAV  131
            H FW   VS++ S  I  +++ +  QVTD YLLALA AH G+  TFD+ ++  AV
Sbjct  13   HSFWPDDVSLVGSGDIAPTKILTSGQVTDTYLLALAKAHGGQLATFDRKLSAAAV  67


>gi|340358885|ref|ZP_08681388.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon 
448 str. F0400]
 gi|339885631|gb|EGQ75340.1| PIN family toxin-antitoxin system [Actinomyces sp. oral taxon 
448 str. F0400]
Length=148

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 39/124 (32%), Positives = 57/124 (46%), Gaps = 4/124 (3%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPS-PISVA  62
            LLDVNV+LAL   +H  H  A +W   +    WA+C IT++ + R++         + V+
Sbjct  10   LLDVNVMLALSLANHAHHRVATSWF--EDVGAWATCPITESAYCRLLLNSHVTGFELGVS  67

Query  63   HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF  122
               D L        HE    + S L +  ID S L   +Q+TD +L+ LA        T 
Sbjct  68   EVFDALRTFCSVSGHELIEDSAS-LTAPAIDVSGLVGRRQITDFHLVDLAARSGALLATL  126

Query  123  DQSI  126
            D  I
Sbjct  127  DARI  130


>gi|16264145|ref|NP_436937.1| hypothetical protein SM_b20411 [Sinorhizobium meliloti 1021]
 gi|15140270|emb|CAC48797.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti 1021]
Length=82

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 29/76 (39%), Positives = 44/76 (58%), Gaps = 1/76 (1%)

Query  65   IDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTFDQ  124
            ++++A+      H FW   VS++ S  I  S++ +  QVTD YLLALA A  G+  TFD+
Sbjct  1    MEIVAKLRSLPGHVFWPDDVSLVGSSDIIPSKILTSGQVTDTYLLALAKARGGKLATFDR  60

Query  125  SIALTAV-PGATKQHL  139
             ++  AV  G +  HL
Sbjct  61   KLSAAAVTKGNSALHL  76


>gi|333967818|gb|AEG34582.1| PIN domain protein family protein [Thermus thermophilus SG0.5JP17-16]
Length=138

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 47/153 (31%), Positives = 63/153 (42%), Gaps = 36/153 (23%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCA------ITQNGFVRVISQPRYPS  57
            LLD+NV  ALL  +H  H RARA+        W   +      +T  G +R+++      
Sbjct  3    LLDLNVWFALLVPEHPFHPRARAY--------WERASDPFLVRVTALGLLRLLTN-----  49

Query  58   PISVAHAIDLLARATHTRYHEFWSCTVSI----------LDSKVIDRSRL-HSPKQVTDA  106
                A A+D         +  +W   +S           LD  + D  R   SP+  TDA
Sbjct  50   ----AKAMDGKPLEVREAWRVYWELRLSSGVPLLEEPEGLDEALADLVRGGFSPRLWTDA  105

Query  107  YLLALAVAHDGRFVTFDQSIALTAVPGATKQHL  139
            YL A A+A   R VTFDQ       PG    HL
Sbjct  106  YLAAFALAGGHRLVTFDQDF--LGFPGLEVLHL  136


>gi|336115788|ref|YP_004570554.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
 gi|334683566|dbj|BAK33151.1| hypothetical protein MLP_01370 [Microlunatus phosphovorus NM-1]
Length=139

 Score = 46.2 bits (108),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 41/124 (34%), Positives = 61/124 (50%), Gaps = 4/124 (3%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVI-SQPRYPSPISVA  62
            LLDVNVLLAL    HV HE A      +++  W +C  T+ G VR++ ++      +  +
Sbjct  2    LLDVNVLLALSWDQHVHHEIAHQRF-AELDT-WNTCPTTEAGLVRLLLTEQVVGRKVIGS  59

Query  63   HAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTF  122
             A+  LA         F   + S L   VID   L   +QVTD  L+ LA +++ +  TF
Sbjct  60   EALGQLAAMRGVSGWGFLPDSGS-LAEPVIDTRVLMGRRQVTDLQLVNLAASNNTKLATF  118

Query  123  DQSI  126
            D  +
Sbjct  119  DAGL  122


>gi|320108460|ref|YP_004184050.1| PIN domain-containing protein family protein [Terriglobus saanensis 
SP1PR4]
 gi|319926981|gb|ADV84056.1| PIN domain protein family protein [Terriglobus saanensis SP1PR4]
Length=142

 Score = 45.8 bits (107),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 39/127 (31%), Positives = 53/127 (42%), Gaps = 7/127 (5%)

Query  6    DVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVIS-----QPRYPSPIS  60
            DVNV LAL    H     A+ W    I      C +TQ GF+R+++     Q    + + 
Sbjct  8    DVNVWLALTGETHEHSRPAQIWYGTLISETLLFCRMTQLGFLRILTNKTAMQADVKTNLQ  67

Query  61   VAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFV  120
                     +    RY E      +   S  I  +   SPK   DAYL A AV    R V
Sbjct  68   ALRIYQQWIQTDGARYREEPDNMEAAFAS--IASTTASSPKLWNDAYLSAFAVTAGLRLV  125

Query  121  TFDQSIA  127
            TFD+++A
Sbjct  126  TFDRALA  132


>gi|289749117|ref|ZP_06508495.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689704|gb|EFD57133.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=116

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 31/87 (36%), Positives = 45/87 (52%), Gaps = 7/87 (8%)

Query  41   ITQNGFVRVISQPRYPSPISVAHAIDLLARATHTRYHEFWSCTVSILDSKVIDRSRLHSP  100
            +TQ   VR + +    S  S A A D+++    T  HEFW   +S    +V   + +   
Sbjct  23   MTQGSLVRFLVR----SGQSAAAARDVVSAVQCTSRHEFWPDALSFAGVEV---AGVVGH  75

Query  101  KQVTDAYLLALAVAHDGRFVTFDQSIA  127
            +QVTDAYL  LA +HDG+  T D  +A
Sbjct  76   RQVTDAYLAQLARSHDGQLATLDSGLA  102


>gi|116073603|ref|ZP_01470865.1| hypothetical protein RS9916_34172 [Synechococcus sp. RS9916]
 gi|116068908|gb|EAU74660.1| hypothetical protein RS9916_34172 [Synechococcus sp. RS9916]
Length=144

 Score = 44.7 bits (104),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 40/139 (29%), Positives = 61/139 (44%), Gaps = 17/139 (12%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-----YPSP  58
            L D+NV LAL+   H  H  A A+   Q  +    C +T  G VR++ QP+       + 
Sbjct  7    LPDLNVWLALVSPTHQHHSSAVAYWEEQASQQVLFCTVTALGLVRLVMQPKVMGDAALTA  66

Query  59   ISVAHAIDLLARATHTRY----HEFWSCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVA  114
             + +  +D   +     Y     E W     ++      R    SP+  TDA+L ALA+ 
Sbjct  67   AAASALLDQFVQQPGVSYAQPSSEGWDVFHGLM------RQAELSPRLCTDAHLAALAIT  120

Query  115  HDGRFVTFDQSIALTAVPG  133
            +  R V+FD+   L   PG
Sbjct  121  NQWRLVSFDRDFQL--FPG  137


>gi|87123096|ref|ZP_01078947.1| hypothetical protein RS9917_04535 [Synechococcus sp. RS9917]
 gi|86168816|gb|EAQ70072.1| hypothetical protein RS9917_04535 [Synechococcus sp. RS9917]
Length=144

 Score = 44.7 bits (104),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 38/130 (30%), Positives = 58/130 (45%), Gaps = 11/130 (8%)

Query  4    LLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPR-YPSPISVA  62
            L D+NV LAL   DH  H+ A A+  G+       C +T  G VR++SQ +   + +  A
Sbjct  7    LPDLNVWLALATADHKHHDHAVAYWEGEAAEQVLFCTVTALGLVRLVSQAKVMGAAVKSA  66

Query  63   HAIDLLARATHTRYHEFWSCTVSILDSKVID------RSRLHSPKQVTDAYLLALAVAHD  116
                 L RA    + +     ++   S   D          H  +  TD YL ALA+++ 
Sbjct  67   RDASELLRA----FCQLEGVGMATPTSNGWDVFHQLMAGGNHPARLCTDTYLAALAISNG  122

Query  117  GRFVTFDQSI  126
             R V+FD+  
Sbjct  123  WRLVSFDRDF  132



Lambda     K      H
   0.325    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129798780480


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40