BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3324A

Length=44
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|289449017|ref|ZP_06438761.1|  pterin-4-alpha-carbinolamine deh...  94.4    5e-18
gi|15842917|ref|NP_337954.1|  pterin-4-alpha-carbinolamine dehydr...  93.2    1e-17
gi|254552429|ref|ZP_05142876.1|  pterin-4-alpha-carbinolamine deh...  93.2    1e-17
gi|306799286|ref|ZP_07437588.1|  hypothetical protein TMFG_00535 ...  93.2    1e-17
gi|306973776|ref|ZP_07486437.1|  hypothetical protein TMJG_03510 ...  92.8    1e-17
gi|340628309|ref|YP_004746761.1|  putative fragment of pterin-4-a...  92.4    2e-17
gi|167966720|ref|ZP_02548997.1|  pterin-4-alpha-carbinolamine deh...  61.6    3e-08
gi|308232337|ref|ZP_07415757.2|  pterin-4-alpha-carbinolamine deh...  45.4    0.003
gi|15842681|ref|NP_337718.1|  pterin-4-alpha-carbinolamine dehydr...  44.7    0.005
gi|31794289|ref|NP_856782.1|  pterin-4-alpha-carbinolamine dehydr...  44.3    0.005


>gi|289449017|ref|ZP_06438761.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium 
tuberculosis CPHL_A]
 gi|289421975|gb|EFD19176.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium 
tuberculosis CPHL_A]
Length=109

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)

Query  1    VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44
            VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct  66   VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  109


>gi|15842917|ref|NP_337954.1| pterin-4-alpha-carbinolamine dehydratase [Mycobacterium tuberculosis 
CDC1551]
 gi|31794506|ref|NP_856999.1| pterin-4-alpha-carbinolamine dehydratase MoaB3 [Mycobacterium 
bovis AF2122/97]
 gi|121639249|ref|YP_979473.1| putative pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 54 more sequence titles
 Length=124

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)

Query  1    VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44
            VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct  81   VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  124


>gi|254552429|ref|ZP_05142876.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium 
tuberculosis '98-R604 INH-RIF-EM']
 gi|308376073|ref|ZP_07668184.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium 
tuberculosis SUMu007]
 gi|308344433|gb|EFP33284.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium 
tuberculosis SUMu007]
Length=108

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)

Query  1    VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44
            VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct  65   VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  108


>gi|306799286|ref|ZP_07437588.1| hypothetical protein TMFG_00535 [Mycobacterium tuberculosis SUMu006]
 gi|308340699|gb|EFP29550.1| hypothetical protein TMFG_00535 [Mycobacterium tuberculosis SUMu006]
Length=65

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)

Query  1   VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44
           VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct  22  VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  65


>gi|306973776|ref|ZP_07486437.1| hypothetical protein TMJG_03510 [Mycobacterium tuberculosis SUMu010]
 gi|308406121|ref|ZP_07669515.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium 
tuberculosis SUMu012]
 gi|308357014|gb|EFP45865.1| hypothetical protein TMJG_03510 [Mycobacterium tuberculosis SUMu010]
 gi|308364455|gb|EFP53306.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium 
tuberculosis SUMu012]
Length=50

 Score = 92.8 bits (229),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)

Query  1   VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44
           VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct  7   VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  50


>gi|340628309|ref|YP_004746761.1| putative fragment of pterin-4-alpha-carbinolamine dehydratase 
MOAB3 [Mycobacterium canettii CIPT 140010059]
 gi|340006499|emb|CCC45682.1| putative fragment of pterin-4-alpha-carbinolamine dehydratase 
MOAB3 (PHS) (4-alpha-hydroxy-tetrahydropterin dehydratase) 
(pterin-4-A-carbinolamine dehydratase) (phenylalanine hydroxylase-stimulating 
protein) (PHS) (pterin carbinolamine dehydratase) 
(PCD) [Mycobacterium canettii CIPT 140010059]
Length=44

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)

Query  1   VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44
           VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct  1   VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44


>gi|167966720|ref|ZP_02548997.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium 
tuberculosis H37Ra]
Length=29

 Score = 61.6 bits (148),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 29/29 (100%), Positives = 29/29 (100%), Gaps = 0/29 (0%)

Query  16  MHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44
           MHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct  1   MHCLTRVDFDLAEAFSAVHDEQCSQQVAR  29


>gi|308232337|ref|ZP_07415757.2| pterin-4-alpha-carbinolamine dehydratase moaB1 [Mycobacterium 
tuberculosis SUMu001]
 gi|308369957|ref|ZP_07419660.2| pterin-4-alpha-carbinolamine dehydratase moaB1 [Mycobacterium 
tuberculosis SUMu002]
 gi|308371236|ref|ZP_07424287.2| pterin-4-alpha-carbinolamine dehydratase moaB1 [Mycobacterium 
tuberculosis SUMu003]
 13 more sequence titles
 Length=103

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 20/44 (46%), Positives = 31/44 (71%), Gaps = 0/44 (0%)

Query  1    VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44
            V +KRSVR+T WTR++  LT +DFDLA +  A++  + + + AR
Sbjct  60   VLDKRSVRVTAWTRKLGYLTDIDFDLAASVEAMYATEFADRPAR  103


>gi|15842681|ref|NP_337718.1| pterin-4-alpha-carbinolamine dehydratase [Mycobacterium tuberculosis 
CDC1551]
 gi|167969719|ref|ZP_02551996.1| pterin-4-alpha-carbinolamine dehydratase [Mycobacterium tuberculosis 
H37Ra]
 gi|13883000|gb|AAK47532.1| pterin-4-alpha-carbinolamine dehydratase [Mycobacterium tuberculosis 
CDC1551]
Length=142

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/44 (46%), Positives = 31/44 (71%), Gaps = 0/44 (0%)

Query  1    VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44
            V +KRSVR+T WTR++  LT +DFDLA +  A++  + + + AR
Sbjct  99   VLDKRSVRVTAWTRKLGYLTDIDFDLAASVEAMYATEFADRPAR  142


>gi|31794289|ref|NP_856782.1| pterin-4-alpha-carbinolamine dehydratase MoaB1 [Mycobacterium 
bovis AF2122/97]
 gi|57117056|ref|YP_177926.1| pterin-4-alpha-carbinolamine dehydratase MoaB1 [Mycobacterium 
tuberculosis H37Rv]
 gi|121638995|ref|YP_979219.1| putative pterin-4-alpha-carbinolamine dehydratase moaB1 [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 59 more sequence titles
 Length=131

 Score = 44.3 bits (103),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/44 (46%), Positives = 31/44 (71%), Gaps = 0/44 (0%)

Query  1    VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR  44
            V +KRSVR+T WTR++  LT +DFDLA +  A++  + + + AR
Sbjct  88   VLDKRSVRVTAWTRKLGYLTDIDFDLAASVEAMYATEFADRPAR  131



Lambda     K      H
   0.328    0.129    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128588243264


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40