BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3324A
Length=44
Score E
Sequences producing significant alignments: (Bits) Value
gi|289449017|ref|ZP_06438761.1| pterin-4-alpha-carbinolamine deh... 94.4 5e-18
gi|15842917|ref|NP_337954.1| pterin-4-alpha-carbinolamine dehydr... 93.2 1e-17
gi|254552429|ref|ZP_05142876.1| pterin-4-alpha-carbinolamine deh... 93.2 1e-17
gi|306799286|ref|ZP_07437588.1| hypothetical protein TMFG_00535 ... 93.2 1e-17
gi|306973776|ref|ZP_07486437.1| hypothetical protein TMJG_03510 ... 92.8 1e-17
gi|340628309|ref|YP_004746761.1| putative fragment of pterin-4-a... 92.4 2e-17
gi|167966720|ref|ZP_02548997.1| pterin-4-alpha-carbinolamine deh... 61.6 3e-08
gi|308232337|ref|ZP_07415757.2| pterin-4-alpha-carbinolamine deh... 45.4 0.003
gi|15842681|ref|NP_337718.1| pterin-4-alpha-carbinolamine dehydr... 44.7 0.005
gi|31794289|ref|NP_856782.1| pterin-4-alpha-carbinolamine dehydr... 44.3 0.005
>gi|289449017|ref|ZP_06438761.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium
tuberculosis CPHL_A]
gi|289421975|gb|EFD19176.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium
tuberculosis CPHL_A]
Length=109
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)
Query 1 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct 66 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 109
>gi|15842917|ref|NP_337954.1| pterin-4-alpha-carbinolamine dehydratase [Mycobacterium tuberculosis
CDC1551]
gi|31794506|ref|NP_856999.1| pterin-4-alpha-carbinolamine dehydratase MoaB3 [Mycobacterium
bovis AF2122/97]
gi|121639249|ref|YP_979473.1| putative pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium
bovis BCG str. Pasteur 1173P2]
54 more sequence titles
Length=124
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)
Query 1 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct 81 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 124
>gi|254552429|ref|ZP_05142876.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|308376073|ref|ZP_07668184.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium
tuberculosis SUMu007]
gi|308344433|gb|EFP33284.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium
tuberculosis SUMu007]
Length=108
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)
Query 1 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct 65 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 108
>gi|306799286|ref|ZP_07437588.1| hypothetical protein TMFG_00535 [Mycobacterium tuberculosis SUMu006]
gi|308340699|gb|EFP29550.1| hypothetical protein TMFG_00535 [Mycobacterium tuberculosis SUMu006]
Length=65
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)
Query 1 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct 22 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 65
>gi|306973776|ref|ZP_07486437.1| hypothetical protein TMJG_03510 [Mycobacterium tuberculosis SUMu010]
gi|308406121|ref|ZP_07669515.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium
tuberculosis SUMu012]
gi|308357014|gb|EFP45865.1| hypothetical protein TMJG_03510 [Mycobacterium tuberculosis SUMu010]
gi|308364455|gb|EFP53306.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium
tuberculosis SUMu012]
Length=50
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)
Query 1 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct 7 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 50
>gi|340628309|ref|YP_004746761.1| putative fragment of pterin-4-alpha-carbinolamine dehydratase
MOAB3 [Mycobacterium canettii CIPT 140010059]
gi|340006499|emb|CCC45682.1| putative fragment of pterin-4-alpha-carbinolamine dehydratase
MOAB3 (PHS) (4-alpha-hydroxy-tetrahydropterin dehydratase)
(pterin-4-A-carbinolamine dehydratase) (phenylalanine hydroxylase-stimulating
protein) (PHS) (pterin carbinolamine dehydratase)
(PCD) [Mycobacterium canettii CIPT 140010059]
Length=44
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%)
Query 1 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct 1 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
>gi|167966720|ref|ZP_02548997.1| pterin-4-alpha-carbinolamine dehydratase moaB3 [Mycobacterium
tuberculosis H37Ra]
Length=29
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/29 (100%), Positives = 29/29 (100%), Gaps = 0/29 (0%)
Query 16 MHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
MHCLTRVDFDLAEAFSAVHDEQCSQQVAR
Sbjct 1 MHCLTRVDFDLAEAFSAVHDEQCSQQVAR 29
>gi|308232337|ref|ZP_07415757.2| pterin-4-alpha-carbinolamine dehydratase moaB1 [Mycobacterium
tuberculosis SUMu001]
gi|308369957|ref|ZP_07419660.2| pterin-4-alpha-carbinolamine dehydratase moaB1 [Mycobacterium
tuberculosis SUMu002]
gi|308371236|ref|ZP_07424287.2| pterin-4-alpha-carbinolamine dehydratase moaB1 [Mycobacterium
tuberculosis SUMu003]
13 more sequence titles
Length=103
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/44 (46%), Positives = 31/44 (71%), Gaps = 0/44 (0%)
Query 1 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
V +KRSVR+T WTR++ LT +DFDLA + A++ + + + AR
Sbjct 60 VLDKRSVRVTAWTRKLGYLTDIDFDLAASVEAMYATEFADRPAR 103
>gi|15842681|ref|NP_337718.1| pterin-4-alpha-carbinolamine dehydratase [Mycobacterium tuberculosis
CDC1551]
gi|167969719|ref|ZP_02551996.1| pterin-4-alpha-carbinolamine dehydratase [Mycobacterium tuberculosis
H37Ra]
gi|13883000|gb|AAK47532.1| pterin-4-alpha-carbinolamine dehydratase [Mycobacterium tuberculosis
CDC1551]
Length=142
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (46%), Positives = 31/44 (71%), Gaps = 0/44 (0%)
Query 1 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
V +KRSVR+T WTR++ LT +DFDLA + A++ + + + AR
Sbjct 99 VLDKRSVRVTAWTRKLGYLTDIDFDLAASVEAMYATEFADRPAR 142
>gi|31794289|ref|NP_856782.1| pterin-4-alpha-carbinolamine dehydratase MoaB1 [Mycobacterium
bovis AF2122/97]
gi|57117056|ref|YP_177926.1| pterin-4-alpha-carbinolamine dehydratase MoaB1 [Mycobacterium
tuberculosis H37Rv]
gi|121638995|ref|YP_979219.1| putative pterin-4-alpha-carbinolamine dehydratase moaB1 [Mycobacterium
bovis BCG str. Pasteur 1173P2]
59 more sequence titles
Length=131
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (46%), Positives = 31/44 (71%), Gaps = 0/44 (0%)
Query 1 VHNKRSVRLTCWTRQMHCLTRVDFDLAEAFSAVHDEQCSQQVAR 44
V +KRSVR+T WTR++ LT +DFDLA + A++ + + + AR
Sbjct 88 VLDKRSVRVTAWTRKLGYLTDIDFDLAASVEAMYATEFADRPAR 131
Lambda K H
0.328 0.129 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128588243264
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40