BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3330 Length=405 Score E Sequences producing significant alignments: (Bits) Value gi|15610466|ref|NP_217847.1| penicillin-binding protein DacB1 [M... 810 0.0 gi|340628315|ref|YP_004746767.1| putative penicillin-binding pro... 807 0.0 gi|289759480|ref|ZP_06518858.1| penicillin-binding protein dacB1... 806 0.0 gi|308232419|ref|ZP_07415998.2| penicillin-binding protein dacB1... 784 0.0 gi|118617116|ref|YP_905448.1| penicillin-binding protein DacC [M... 650 0.0 gi|183981214|ref|YP_001849505.1| penicillin-binding protein DacC... 649 0.0 gi|240169097|ref|ZP_04747756.1| penicillin-binding protein DacC ... 649 0.0 gi|15827291|ref|NP_301554.1| D-alanyl-D-alanine carboxypeptidase... 634 7e-180 gi|41409546|ref|NP_962382.1| hypothetical protein MAP3448 [Mycob... 630 9e-179 gi|118466287|ref|YP_883443.1| D-alanyl-D-alanine carboxypeptidas... 630 2e-178 gi|296168851|ref|ZP_06850523.1| D-alanyl-D-alanine carboxypeptid... 627 1e-177 gi|254820249|ref|ZP_05225250.1| D-alanyl-D-alanine carboxypeptid... 625 3e-177 gi|306973781|ref|ZP_07486442.1| penicillin-binding protein dacB1... 620 2e-175 gi|342861552|ref|ZP_08718199.1| D-alanyl-D-alanine carboxypeptid... 613 2e-173 gi|254776738|ref|ZP_05218254.1| D-alanyl-D-alanine carboxypeptid... 606 3e-171 gi|298526808|ref|ZP_07014217.1| conserved hypothetical protein [... 585 4e-165 gi|333991792|ref|YP_004524406.1| penicillin-binding protein DacC... 560 1e-157 gi|120402569|ref|YP_952398.1| Serine-type D-Ala-D-Ala carboxypep... 521 6e-146 gi|145225445|ref|YP_001136123.1| Serine-type D-Ala-D-Ala carboxy... 510 2e-142 gi|108798187|ref|YP_638384.1| Serine-type D-Ala-D-Ala carboxypep... 502 6e-140 gi|126433845|ref|YP_001069536.1| Serine-type D-Ala-D-Ala carboxy... 501 9e-140 gi|118471047|ref|YP_886038.1| D-alanyl-D-alanine carboxypeptidas... 497 1e-138 gi|169630760|ref|YP_001704409.1| penicillin-binding protein DacB... 488 7e-136 gi|467182|gb|AAA17340.1| L308_F1_36 [Mycobacterium leprae] 378 1e-102 gi|229489552|ref|ZP_04383415.1| serine-type D-Ala-D-Ala carboxyp... 365 8e-99 gi|226305499|ref|YP_002765459.1| D-alanyl-D-alanine carboxypepti... 360 2e-97 gi|111023206|ref|YP_706178.1| serine-type D-Ala-D-Ala carboxypep... 354 2e-95 gi|312140773|ref|YP_004008109.1| d-alanyl-d-alanine carboxypepti... 353 2e-95 gi|325675587|ref|ZP_08155271.1| serine-type D-Ala-D-Ala carboxyp... 353 4e-95 gi|226365711|ref|YP_002783494.1| D-alanyl-D-alanine carboxypepti... 345 6e-93 gi|54022905|ref|YP_117147.1| putative penicillin-binding protein... 344 2e-92 gi|256380453|ref|YP_003104113.1| Serine-type D-Ala-D-Ala carboxy... 327 2e-87 gi|19551910|ref|NP_599912.1| D-alanyl-D-alanine carboxypeptidase... 327 2e-87 gi|21323446|dbj|BAB98073.1| D-alanyl-D-alanine carboxypeptidase ... 326 3e-87 gi|344043811|gb|EGV39499.1| D-alanyl-D-alanine carboxypeptidase ... 317 2e-84 gi|145294853|ref|YP_001137674.1| hypothetical protein cgR_0800 [... 317 2e-84 gi|257054601|ref|YP_003132433.1| D-alanyl-D-alanine carboxypepti... 316 5e-84 gi|333921635|ref|YP_004495216.1| serine-type D-Ala-D-Ala carboxy... 311 2e-82 gi|259506608|ref|ZP_05749510.1| penicillin-binding protein [Cory... 307 2e-81 gi|25027255|ref|NP_737309.1| putative penicillin-binding protein... 307 2e-81 gi|343926643|ref|ZP_08766141.1| D-alanyl-D-alanine carboxypeptid... 304 1e-80 gi|326381944|ref|ZP_08203637.1| peptidase S11 D-alanyl-D-alanine... 304 1e-80 gi|296120094|ref|ZP_06838648.1| serine-type D-Ala-D-Ala carboxyp... 304 2e-80 gi|331699048|ref|YP_004335287.1| Serine-type D-Ala-D-Ala carboxy... 300 3e-79 gi|262201714|ref|YP_003272922.1| peptidase S11 D-alanyl-D-alanin... 297 2e-78 gi|300782776|ref|YP_003763067.1| D-alanyl-D-alanine carboxypepti... 293 3e-77 gi|258651532|ref|YP_003200688.1| peptidase S11 D-alanyl-D-alanin... 292 6e-77 gi|305679771|ref|ZP_07402581.1| serine-type D-Ala-D-Ala carboxyp... 290 3e-76 gi|225020583|ref|ZP_03709775.1| hypothetical protein CORMATOL_00... 290 4e-76 gi|334696255|gb|AEG81052.1| D-alanyl-D-alanine carboxypeptidase ... 286 6e-75 >gi|15610466|ref|NP_217847.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis H37Rv] gi|15842925|ref|NP_337962.1| penicillin-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31794515|ref|NP_857008.1| penicillin-binding protein DacB1 [Mycobacterium bovis AF2122/97] 48 more sequence titles Length=405 Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/405 (100%), Positives = 405/405 (100%), Gaps = 0/405 (0%) Query 1 MAFLRSVSCLAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPL 60 MAFLRSVSCLAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPL Sbjct 1 MAFLRSVSCLAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPL 60 Query 61 PLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPA 120 PLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPA Sbjct 61 PLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPA 120 Query 121 SVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDA 180 SVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDA Sbjct 121 SVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDA 180 Query 181 AYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN 240 AYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN Sbjct 181 AYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN 240 Query 241 PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRD 300 PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRD Sbjct 241 PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRD 300 Query 301 GRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQR 360 GRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQR Sbjct 301 GRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQR 360 Query 361 VDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 VDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH Sbjct 361 VDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 >gi|340628315|ref|YP_004746767.1| putative penicillin-binding protein PBPA [Mycobacterium canettii CIPT 140010059] gi|340006505|emb|CCC45689.1| putative penicillin-binding protein DACB1 (D-alanyl-D-alanine carboxypeptidase) (DD-peptidase) (DD-carboxypeptidase) (PBP) (DD-transpeptidase) (serine-type D-ala-D-ala carboxypeptidase) (D-amino acid hydrolase) [Mycobacterium canettii CIPT 140010059] Length=405 Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/405 (99%), Positives = 403/405 (99%), Gaps = 0/405 (0%) Query 1 MAFLRSVSCLAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPL 60 MAFLRSVSCLAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPL Sbjct 1 MAFLRSVSCLAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPL 60 Query 61 PLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPA 120 PLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPA Sbjct 61 PLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPA 120 Query 121 SVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDA 180 SVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDA Sbjct 121 SVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDA 180 Query 181 AYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN 240 AYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN Sbjct 181 AYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN 240 Query 241 PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRD 300 PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRD Sbjct 241 PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRD 300 Query 301 GRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQR 360 GRRLM VLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQR Sbjct 301 GRRLMAVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQR 360 Query 361 VDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 VDPQAAARISAADALPVRVGVAVIG LIVFGLIMVARAMNRRPQH Sbjct 361 VDPQAAARISAADALPVRVGVAVIGTLIVFGLIMVARAMNRRPQH 405 >gi|289759480|ref|ZP_06518858.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85] gi|289715044|gb|EFD79056.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85] Length=405 Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/405 (99%), Positives = 404/405 (99%), Gaps = 0/405 (0%) Query 1 MAFLRSVSCLAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPL 60 MAFLRSVS LAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPL Sbjct 1 MAFLRSVSRLAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPL 60 Query 61 PLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPA 120 PLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPA Sbjct 61 PLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPA 120 Query 121 SVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDA 180 SVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDA Sbjct 121 SVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDA 180 Query 181 AYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN 240 AYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN Sbjct 181 AYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN 240 Query 241 PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRD 300 PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRD Sbjct 241 PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRD 300 Query 301 GRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQR 360 GRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQR Sbjct 301 GRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQR 360 Query 361 VDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 VDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH Sbjct 361 VDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 >gi|308232419|ref|ZP_07415998.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu001] gi|308371314|ref|ZP_07424530.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu003] gi|308372505|ref|ZP_07428899.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu004] 11 more sequence titles Length=392 Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/392 (99%), Positives = 392/392 (100%), Gaps = 0/392 (0%) Query 14 VFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTPVGGNA 73 +FAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTPVGGNA Sbjct 1 MFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTPVGGNA 60 Query 74 LGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASIN 133 LGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASIN Sbjct 61 LGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASIN 120 Query 134 TLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPA 193 TLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPA Sbjct 121 TLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPA 180 Query 194 ALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFD 253 ALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFD Sbjct 181 ALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFD 240 Query 254 FPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTR 313 FPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTR Sbjct 241 FPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTR 300 Query 314 QPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAAD 373 QPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAAD Sbjct 301 QPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAAD 360 Query 374 ALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 ALPVRVGVAVIGALIVFGLIMVARAMNRRPQH Sbjct 361 ALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 392 >gi|118617116|ref|YP_905448.1| penicillin-binding protein DacC [Mycobacterium ulcerans Agy99] gi|118569226|gb|ABL03977.1| penicillin-binding protein DacC [Mycobacterium ulcerans Agy99] Length=415 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/415 (78%), Positives = 351/415 (85%), Gaps = 10/415 (2%) Query 1 MAFLRSVSCLAAAVF------AVGTGIGLPTAAGEPNAAPAA----CPYKVSTPPAVDSS 50 M LR+ SCLAAAVF VG LP+A+ EPNA + CPY+V+TPPAVDSS Sbjct 1 MYLLRAASCLAAAVFMAAGPAVVGMPAALPSASAEPNAEANSGAQECPYRVTTPPAVDSS 60 Query 51 EVPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAA 110 EVP AGEPPLPL VP PVGGNALGGCGII AP + P PGDVSAEAWLV DLDSGA+IAA Sbjct 61 EVPQAGEPPLPLAVPSAPVGGNALGGCGIIAAPDTPPVPGDVSAEAWLVGDLDSGAIIAA 120 Query 111 RDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLH 170 RDPHGRHRPAS+IKVLV M SI L NK+V GT DD+A EGTKVGVN GG YTVNQLLH Sbjct 121 RDPHGRHRPASIIKVLVVMVSIKELNQNKAVPGTNDDSAAEGTKVGVNAGGMYTVNQLLH 180 Query 171 GLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDI 230 GLLMHSGNDAA+ALA QLGGM ALEKIN+LAAKLGGRDTRVATPSGLDGPGMSTSAYDI Sbjct 181 GLLMHSGNDAAHALAIQLGGMQTALEKINMLAAKLGGRDTRVATPSGLDGPGMSTSAYDI 240 Query 231 GLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAG 290 GLFYRYAWQNP+FADIVATRTFDFPGHG+HPGYELENDN LLYNYPGALGGKTGYTDDAG Sbjct 241 GLFYRYAWQNPIFADIVATRTFDFPGHGEHPGYELENDNHLLYNYPGALGGKTGYTDDAG 300 Query 291 QTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMS 350 QTFVGAAN +GRRL VLLHGTRQPI PWEQAAHLLDYGF+T GTQIG+LIEPDPSL++ Sbjct 301 QTFVGAANHNGRRLFAVLLHGTRQPIAPWEQAAHLLDYGFSTAQGTQIGSLIEPDPSLVA 360 Query 351 TDRNPADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 P R+ D QAA +S+ADALPVRVGVAVIGA+IVFGL++VAR++N RPQH Sbjct 361 PKETPEARRLADAQAAGLVSSADALPVRVGVAVIGAIIVFGLMLVARSLNNRPQH 415 >gi|183981214|ref|YP_001849505.1| penicillin-binding protein DacC [Mycobacterium marinum M] gi|183174540|gb|ACC39650.1| penicillin-binding protein DacC [Mycobacterium marinum M] Length=415 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/415 (78%), Positives = 351/415 (85%), Gaps = 10/415 (2%) Query 1 MAFLRSVSCLAAAVF------AVGTGIGLPTAAGEPNAAPAA----CPYKVSTPPAVDSS 50 M LR+ SCLAAAVF VG LP+A+ EPNA + CPY+V+TPPAVDSS Sbjct 1 MYLLRAASCLAAAVFMAAGPAVVGMPAALPSASAEPNAEANSGAQECPYRVTTPPAVDSS 60 Query 51 EVPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAA 110 EVP AGEPPLPL VP PVGGNALGGCGII AP + P PGDVSAEAWLV DLDSGA+IAA Sbjct 61 EVPQAGEPPLPLAVPSAPVGGNALGGCGIIAAPDTPPVPGDVSAEAWLVGDLDSGAIIAA 120 Query 111 RDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLH 170 RDPH RHRPAS+IKVLVAM SI L NK+V GT DD+A EGTKVGVN GG YTVNQLLH Sbjct 121 RDPHARHRPASIIKVLVAMVSIKELNQNKAVPGTNDDSAAEGTKVGVNAGGMYTVNQLLH 180 Query 171 GLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDI 230 GLLMHSGNDAA+ALA QLGGM ALEKIN+LAAKLGGRDTRVATPSGLDGPGMSTSAYDI Sbjct 181 GLLMHSGNDAAHALAIQLGGMQTALEKINMLAAKLGGRDTRVATPSGLDGPGMSTSAYDI 240 Query 231 GLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAG 290 GLFYRYAWQNP+FADIVATRTFDFPGHG+HPGYELENDN LLYNYPGALGGKTGYTDDAG Sbjct 241 GLFYRYAWQNPIFADIVATRTFDFPGHGEHPGYELENDNHLLYNYPGALGGKTGYTDDAG 300 Query 291 QTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMS 350 QTFVGAAN +GRRL VLLHGTRQPI PWEQAAHLLDYGF+T GTQIG+LIEPDPSL++ Sbjct 301 QTFVGAANHNGRRLFAVLLHGTRQPIAPWEQAAHLLDYGFSTAQGTQIGSLIEPDPSLVA 360 Query 351 TDRNPADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 P R+ D QAA +S+ADALPVRVGVAVIGA+IVFGL++VAR++N RPQH Sbjct 361 PKETPEARRLADAQAAGLVSSADALPVRVGVAVIGAIIVFGLMLVARSLNNRPQH 415 >gi|240169097|ref|ZP_04747756.1| penicillin-binding protein DacC [Mycobacterium kansasii ATCC 12478] Length=408 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/408 (82%), Positives = 360/408 (89%), Gaps = 3/408 (0%) Query 1 MAFLRSVSCLAAAVFAVGTGIGLPTAAGEPNA---APAACPYKVSTPPAVDSSEVPAAGE 57 M FLR+ SCL AAVF +PTA EPNA + CPYKVSTPPAVDSSEVP AG+ Sbjct 1 MYFLRAASCLVAAVFLAVGPAAVPTAQAEPNAEANSAGNCPYKVSTPPAVDSSEVPTAGD 60 Query 58 PPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRH 117 PPLPL VPPTPVGGNAL GCGIITAP + P PGDVSAEAWLVADLDSGAVIAARDPHGRH Sbjct 61 PPLPLAVPPTPVGGNALAGCGIITAPDTPPVPGDVSAEAWLVADLDSGAVIAARDPHGRH 120 Query 118 RPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSG 177 RPAS+IKVLVAMA+IN L LNKSVAGT DDAA EGTKVGV+ GGTYTVNQLLHGLLMHSG Sbjct 121 RPASIIKVLVAMAAINELNLNKSVAGTDDDAAAEGTKVGVDAGGTYTVNQLLHGLLMHSG 180 Query 178 NDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYA 237 NDAA+ALARQLGGM ALEKIN+LAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYA Sbjct 181 NDAAHALARQLGGMQMALEKINVLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYA 240 Query 238 WQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAA 297 W+NP FADIVATR++DFPGHGDHPGYELENDNQLLY+YPGALGGKTGYTDDAGQTFVGAA Sbjct 241 WRNPTFADIVATRSYDFPGHGDHPGYELENDNQLLYHYPGALGGKTGYTDDAGQTFVGAA 300 Query 298 NRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPAD 357 NR+GRRLM VLLHGTRQPI PWEQAAHLLDYGF+TPAGTQ+G+LIEPDP+L S PA+ Sbjct 301 NRNGRRLMAVLLHGTRQPIAPWEQAAHLLDYGFSTPAGTQVGSLIEPDPALASGKDKPAN 360 Query 358 RQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 RQ QAA +S A+ALPVRVGVAV+GA++VFGLI+VAR+MN R QH Sbjct 361 RQPDASQAAGLMSDAEALPVRVGVAVLGAVVVFGLILVARSMNSRAQH 408 >gi|15827291|ref|NP_301554.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae TN] gi|221229769|ref|YP_002503185.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae Br4923] gi|13092840|emb|CAC30200.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae] gi|219932876|emb|CAR70785.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae Br4923] Length=411 Score = 634 bits (1636), Expect = 7e-180, Method: Compositional matrix adjust. Identities = 317/415 (77%), Positives = 352/415 (85%), Gaps = 14/415 (3%) Query 1 MAFLRSVSCLAAAVFAV--GTGIGLPTAA--------GEPNAAPAACPYKVSTPPAVDSS 50 M+FLRS +CLAAAVFA+ + LPTA PNA PA CPY+VSTPPAVDSS Sbjct 1 MSFLRSTACLAAAVFAIVGPVALDLPTAVPVGHAEPNAGPNAGPATCPYQVSTPPAVDSS 60 Query 51 EVPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAA 110 EVP G PP+PL VPP PVGG AL CGI+TAP + P PGD+SAEAWLVADL+SGAVIAA Sbjct 61 EVPQTGNPPMPLAVPPKPVGGAALNSCGIVTAPDTPPVPGDLSAEAWLVADLNSGAVIAA 120 Query 111 RDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLH 170 RDPHGRHRPAS+IKVL+AMASINTL LNKSVAGTA+DAA EGTKVGV+ GGTYT+NQLLH Sbjct 121 RDPHGRHRPASIIKVLLAMASINTLNLNKSVAGTAEDAAAEGTKVGVHDGGTYTINQLLH 180 Query 171 GLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDI 230 GLLM SGNDAA++LA QLGGM AL+KIN+LAAKLGG+DTRVATPSGLDGPGMSTSAYDI Sbjct 181 GLLMQSGNDAAHSLAMQLGGMQQALQKINVLAAKLGGQDTRVATPSGLDGPGMSTSAYDI 240 Query 231 GLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAG 290 GLFYRYAWQNP F++IVATRTF+FPG GDHPGY+LENDNQLLY YPGALGGKTGYTDDAG Sbjct 241 GLFYRYAWQNPSFSNIVATRTFNFPGPGDHPGYQLENDNQLLYQYPGALGGKTGYTDDAG 300 Query 291 QTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMS 350 QTFVGAANR+GRRLM VLLHGTRQPI PWEQAAHLLDYGF+T GTQIGTLIEPDP++ Sbjct 301 QTFVGAANRNGRRLMAVLLHGTRQPIAPWEQAAHLLDYGFSTAVGTQIGTLIEPDPTVAG 360 Query 351 TDRNPADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 ADR QAA +S+ D LPVR+GVAV+G LIVFGLIM+ R++NRRPQH Sbjct 361 N----ADRHGHGLQAAGIMSSNDTLPVRIGVAVVGTLIVFGLIMITRSLNRRPQH 411 >gi|41409546|ref|NP_962382.1| hypothetical protein MAP3448 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398377|gb|AAS05998.1| hypothetical protein MAP_3448 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459585|gb|EGO38520.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp. paratuberculosis S397] Length=394 Score = 630 bits (1626), Expect = 9e-179, Method: Compositional matrix adjust. Identities = 311/378 (83%), Positives = 335/378 (89%), Gaps = 1/378 (0%) Query 29 EPNAAPAACPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPA 88 EPNAAPA CPYKV+TPPAVDSSEVP AG+PP+PL VP PVGG+ALG CGI+ AP + P Sbjct 16 EPNAAPANCPYKVNTPPAVDSSEVPTAGDPPMPLAVPAKPVGGDALGSCGIVAAPNTPPL 75 Query 89 PGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDA 148 PGDVSAEAWLVADLDSGAVIAA+DPHGRHRPAS+IKVLVAMA+INTL LNK+V GTADDA Sbjct 76 PGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAINTLNLNKAVPGTADDA 135 Query 149 AVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGR 208 A EGTKVGV GG +TVNQLLHGLLMHSGNDAA+ALA QLGGM ALEKIN+LAAKLGG+ Sbjct 136 AAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQALEKINVLAAKLGGQ 195 Query 209 DTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELEND 268 DTRVATPSGLD PGMSTSAYDIGLFYRYAWQNP FADIVATRTFDFPGHGDHPGYELEND Sbjct 196 DTRVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFADIVATRTFDFPGHGDHPGYELEND 255 Query 269 NQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDY 328 NQLLY YPGALGGKTGYTDDAGQTFVGAAN DGRRL+ VLLHGTRQPI PWEQAAHLLDY Sbjct 256 NQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLLHGTRQPIAPWEQAAHLLDY 315 Query 329 GFNTPAGTQIGTLIEPDPSLMSTDRN-PADRQRVDPQAAARISAADALPVRVGVAVIGAL 387 GF TP GTQ+G+LI PDPSL R+ ADR + AA IS+ADALPVRVGVAVIG + Sbjct 316 GFATPQGTQVGSLIAPDPSLAPAKRDGAADRLAGNAAAAGMISSADALPVRVGVAVIGTI 375 Query 388 IVFGLIMVARAMNRRPQH 405 +VF LIM+AR+MNRRPQH Sbjct 376 VVFTLIMMARSMNRRPQH 393 >gi|118466287|ref|YP_883443.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104] gi|118167574|gb|ABK68471.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104] Length=419 Score = 630 bits (1624), Expect = 2e-178, Method: Compositional matrix adjust. Identities = 310/378 (83%), Positives = 334/378 (89%), Gaps = 1/378 (0%) Query 29 EPNAAPAACPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPA 88 EPNAAP CPYKV+TPPAVDSSEVP AG+PP+PL VP PVGG+ALG CGI+ AP + P Sbjct 41 EPNAAPTNCPYKVNTPPAVDSSEVPTAGDPPMPLAVPAKPVGGDALGSCGIVAAPNTPPL 100 Query 89 PGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDA 148 PGDVSAEAWLVADLDSGAVIAA+DPHGRHRPAS+IKVLVAMA+INTL LNK+V GTADDA Sbjct 101 PGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAINTLNLNKAVPGTADDA 160 Query 149 AVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGR 208 A EGTKVGV GG +TVNQLLHGLLMHSGNDAA+ALA QLGGM ALEKIN+LAAKLGG+ Sbjct 161 AAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQALEKINVLAAKLGGQ 220 Query 209 DTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELEND 268 DTRVATPSGLD PGMSTSAYDIGLFYRYAWQNP FADIVATRTFDFPGHGDHPGYELEND Sbjct 221 DTRVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFADIVATRTFDFPGHGDHPGYELEND 280 Query 269 NQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDY 328 NQLLY YPGALGGKTGYTDDAGQTFVGAAN DGRRL+ VLLHGTRQPI PWEQAAHLLDY Sbjct 281 NQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLLHGTRQPIAPWEQAAHLLDY 340 Query 329 GFNTPAGTQIGTLIEPDPSLMSTDRN-PADRQRVDPQAAARISAADALPVRVGVAVIGAL 387 GF TP GTQ+G+LI PDPSL R+ ADR + AA IS+ADALPVRVGVAVIG + Sbjct 341 GFATPQGTQVGSLIAPDPSLAPAKRDGAADRLAGNTAAAGMISSADALPVRVGVAVIGTI 400 Query 388 IVFGLIMVARAMNRRPQH 405 +VF LIM+AR+MNRRPQH Sbjct 401 VVFTLIMMARSMNRRPQH 418 >gi|296168851|ref|ZP_06850523.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896468|gb|EFG76118.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=413 Score = 627 bits (1617), Expect = 1e-177, Method: Compositional matrix adjust. Identities = 309/378 (82%), Positives = 333/378 (89%), Gaps = 1/378 (0%) Query 29 EPNAAPAACPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPA 88 EPNAA A CP+KV+TPPAVDSSEVP AG+PP+PL VP PVGG+ALG CGI+ AP + P Sbjct 35 EPNAATANCPFKVNTPPAVDSSEVPQAGDPPMPLAVPAKPVGGDALGSCGIVAAPDAPPL 94 Query 89 PGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDA 148 P DVSA+AWLVADLDSGAVIAA+DPHGRHRPAS+IKVLVAMASIN L LNK+V GTA+DA Sbjct 95 PTDVSADAWLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMASINALNLNKAVPGTAEDA 154 Query 149 AVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGR 208 A EGTKVGV GG +TVNQLLHGLLMHSGNDAA+ALA QLGGM A+EKIN+LAAKLGG+ Sbjct 155 AAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQAVEKINVLAAKLGGK 214 Query 209 DTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELEND 268 DTR ATPSGLDGPGMSTSAYDIGLFYRYAWQNP FADIVATRTFDFPGHGDHPGYELEND Sbjct 215 DTRAATPSGLDGPGMSTSAYDIGLFYRYAWQNPTFADIVATRTFDFPGHGDHPGYELEND 274 Query 269 NQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDY 328 NQLLYNYPGALGGKTGYTDDAGQTFVGAAN +GRRLM VLLHGTRQPI PWEQAAHLLDY Sbjct 275 NQLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLMAVLLHGTRQPIAPWEQAAHLLDY 334 Query 329 GFNTPAGTQIGTLIEPDPSLMSTDRNP-ADRQRVDPQAAARISAADALPVRVGVAVIGAL 387 GF TP GTQ+G LIEPDPSL R+ ADRQ QAA I +ADALP+RVGVAVIG + Sbjct 335 GFATPQGTQVGNLIEPDPSLAPVKRDSAADRQANGAQAAGLIPSADALPIRVGVAVIGTI 394 Query 388 IVFGLIMVARAMNRRPQH 405 IVF LIMVAR+MNRRPQH Sbjct 395 IVFSLIMVARSMNRRPQH 412 >gi|254820249|ref|ZP_05225250.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium intracellulare ATCC 13950] Length=407 Score = 625 bits (1613), Expect = 3e-177, Method: Compositional matrix adjust. Identities = 319/406 (79%), Positives = 345/406 (85%), Gaps = 7/406 (1%) Query 7 VSCLAAAVFAVGT--GIGLPTAAGEP----NAAPAACPYKVSTPPAVDSSEVPAAGEPPL 60 +SCL AA F I LP A EP NAAPA+CPYKV+TPPAVDSSEVP AG+PP+ Sbjct 1 MSCLVAAGFVAWAPATIALPPAKAEPGAEPNAAPASCPYKVNTPPAVDSSEVPTAGDPPI 60 Query 61 PLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPA 120 PL VP PVGG+AL CGI+ AP + P PGDVSAEAWLVADLDSGAVIAA+DPHGRHRPA Sbjct 61 PLAVPAKPVGGDALASCGIVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPA 120 Query 121 SVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDA 180 S+IKVLVAMA+INTL LNKSVAGTADDAA EGTKVGV GG +TVNQLLHGLLMHSGNDA Sbjct 121 SIIKVLVAMAAINTLNLNKSVAGTADDAAAEGTKVGVQEGGVFTVNQLLHGLLMHSGNDA 180 Query 181 AYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQN 240 A+ALA QLGGM ALEKIN+LAAKLGG+DTRVATPSGLD PGMSTSAYDIGLFYRYAWQN Sbjct 181 AHALAMQLGGMQQALEKINVLAAKLGGQDTRVATPSGLDAPGMSTSAYDIGLFYRYAWQN 240 Query 241 PVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRD 300 P FA+IVATRTFDFPGHGDHPGYELENDNQLLY YPGALGGKTGYTDDAGQTFVGAAN D Sbjct 241 PTFANIVATRTFDFPGHGDHPGYELENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHD 300 Query 301 GRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLM-STDRNPADRQ 359 GRRL+ VLLHGTRQPI PWEQAAHLLDYGF TP GTQ+G+L+ PDPSL + ADR Sbjct 301 GRRLVAVLLHGTRQPIAPWEQAAHLLDYGFATPQGTQVGSLVAPDPSLAPAKSDTAADRL 360 Query 360 RVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 + A A I +ADA+PVRVGVAVIGA+IVF LIM AR+MNRRPQH Sbjct 361 ANNAAAGAIIGSADAMPVRVGVAVIGAIIVFSLIMAARSMNRRPQH 406 >gi|306973781|ref|ZP_07486442.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu010] gi|307081490|ref|ZP_07490660.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu011] gi|308356859|gb|EFP45710.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu010] gi|308360815|gb|EFP49666.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis SUMu011] Length=307 Score = 620 bits (1598), Expect = 2e-175, Method: Compositional matrix adjust. Identities = 306/307 (99%), Positives = 307/307 (100%), Gaps = 0/307 (0%) Query 99 VADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVN 158 +ADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVN Sbjct 1 MADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVN 60 Query 159 TGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGL 218 TGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGL Sbjct 61 TGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGL 120 Query 219 DGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGA 278 DGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGA Sbjct 121 DGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGA 180 Query 279 LGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQI 338 LGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQI Sbjct 181 LGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQI 240 Query 339 GTLIEPDPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARA 398 GTLIEPDPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARA Sbjct 241 GTLIEPDPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARA 300 Query 399 MNRRPQH 405 MNRRPQH Sbjct 301 MNRRPQH 307 >gi|342861552|ref|ZP_08718199.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium colombiense CECT 3035] gi|342131041|gb|EGT84330.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium colombiense CECT 3035] Length=404 Score = 613 bits (1580), Expect = 2e-173, Method: Compositional matrix adjust. Identities = 303/399 (76%), Positives = 333/399 (84%), Gaps = 0/399 (0%) Query 7 VSCLAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEPPLPLVVPP 66 V+ A A +GT + EPNAAP CPY+V+TP AVDSSE P AG+PP+PL VP Sbjct 5 VTLAAPATLPLGTPLANAEPGAEPNAAPPDCPYRVNTPKAVDSSEAPTAGDPPIPLAVPA 64 Query 67 TPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVL 126 PVGG+ALG CG++ AP + P PGDVSAEAWLVADLDSGAVIAA+DPHGRHRPAS+IKVL Sbjct 65 KPVGGDALGSCGVVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKVL 124 Query 127 VAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALAR 186 VAMASIN L LNKSV GTADDAA EGTKVGV GG +TVNQLLHGLLMHSGNDAA+AL+ Sbjct 125 VAMASINALNLNKSVPGTADDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALSM 184 Query 187 QLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADI 246 QLGGM ALEKIN+LAAKLGG DTRVA+PSGLD PGMSTSAYDIGLFYRYAWQNP FADI Sbjct 185 QLGGMEPALEKINVLAAKLGGSDTRVASPSGLDAPGMSTSAYDIGLFYRYAWQNPTFADI 244 Query 247 VATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMT 306 VATRTFDFPGHGDHPGYELENDNQLLY YPGALGGKTGYTDDAGQTFVGAAN DGRRL+ Sbjct 245 VATRTFDFPGHGDHPGYELENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVA 304 Query 307 VLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAA 366 VLLHGTR PI PWEQAAHLLDYGF+TP GTQ+G+LI PDPSL + AD + A Sbjct 305 VLLHGTRVPIAPWEQAAHLLDYGFSTPQGTQVGSLIAPDPSLAPAKHDAADPLATNAAAG 364 Query 367 ARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 I +ADALP+RVGVAVIG ++VF LIM+AR+MNRRP H Sbjct 365 GIIPSADALPIRVGVAVIGTIVVFALIMMARSMNRRPLH 403 >gi|254776738|ref|ZP_05218254.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp. avium ATCC 25291] Length=367 Score = 606 bits (1562), Expect = 3e-171, Method: Compositional matrix adjust. Identities = 299/366 (82%), Positives = 324/366 (89%), Gaps = 1/366 (0%) Query 41 VSTPPAVDSSEVPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVA 100 ++TPPAVDSSEVP AG+PP+PL VP PVGG+ALG CGI+ AP + P PGDVSAEAWLVA Sbjct 1 MNTPPAVDSSEVPTAGDPPMPLAVPAKPVGGDALGSCGIVAAPNTPPLPGDVSAEAWLVA 60 Query 101 DLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTG 160 DLDSGAVIAA+DPHGRHRPAS+IKVLVAMA+INTL LNK+V GTADDAA EGTKVGV G Sbjct 61 DLDSGAVIAAKDPHGRHRPASIIKVLVAMAAINTLNLNKAVPGTADDAAAEGTKVGVEEG 120 Query 161 GTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDG 220 G +TVNQLLHGLLMHSGNDAA+ALA QLGGM ALEKIN+LAAKLGG+DTRVATPSGLD Sbjct 121 GVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQALEKINVLAAKLGGQDTRVATPSGLDA 180 Query 221 PGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALG 280 PGMSTSAYDIGLFYRYAWQNP FADIVATRTFDFPGHGDHPGYELENDNQLLY YPGALG Sbjct 181 PGMSTSAYDIGLFYRYAWQNPTFADIVATRTFDFPGHGDHPGYELENDNQLLYKYPGALG 240 Query 281 GKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGT 340 GKTGYTDDAGQTFVGAAN DGRRL+ VLLHGTRQPI PWEQAAHLLDYGF TP GTQ+G+ Sbjct 241 GKTGYTDDAGQTFVGAANHDGRRLVAVLLHGTRQPIAPWEQAAHLLDYGFATPQGTQVGS 300 Query 341 LIEPDPSLMSTDRN-PADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAM 399 LI PDPSL R+ ADR + AA IS+ADALPVRVGVAVIG ++VF LIM+AR+M Sbjct 301 LIAPDPSLAPAKRDGAADRLAGNTAAAGMISSADALPVRVGVAVIGTIVVFTLIMMARSM 360 Query 400 NRRPQH 405 NRRPQH Sbjct 361 NRRPQH 366 >gi|298526808|ref|ZP_07014217.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298496602|gb|EFI31896.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=330 Score = 585 bits (1509), Expect = 4e-165, Method: Compositional matrix adjust. Identities = 303/316 (96%), Positives = 303/316 (96%), Gaps = 5/316 (1%) Query 90 GDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAA 149 G V W A VIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAA Sbjct 20 GLVGGRTWTAA-----RVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAA 74 Query 150 VEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRD 209 VEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRD Sbjct 75 VEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRD 134 Query 210 TRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDN 269 TRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDN Sbjct 135 TRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDN 194 Query 270 QLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYG 329 QLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYG Sbjct 195 QLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYG 254 Query 330 FNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGVAVIGALIV 389 FNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGVAVIGALIV Sbjct 255 FNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGVAVIGALIV 314 Query 390 FGLIMVARAMNRRPQH 405 FGLIMVARAMNRRPQH Sbjct 315 FGLIMVARAMNRRPQH 330 >gi|333991792|ref|YP_004524406.1| penicillin-binding protein DacC [Mycobacterium sp. JDM601] gi|333487760|gb|AEF37152.1| penicillin-binding protein DacC [Mycobacterium sp. JDM601] Length=400 Score = 560 bits (1444), Expect = 1e-157, Method: Compositional matrix adjust. Identities = 284/373 (77%), Positives = 313/373 (84%), Gaps = 4/373 (1%) Query 31 NAAPAACPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPG 90 NA CPY+VSTPPAVD+SEVP AGEPPLPL VP TPVGG+AL GCGI+ APG+ P PG Sbjct 26 NAGTVGCPYQVSTPPAVDASEVPLAGEPPLPLPVPATPVGGDALAGCGIVVAPGTPPVPG 85 Query 91 DVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAV 150 DVSAE+WLVAD+DSGAVIAARDPHGRHRPASVIKVL AMA++N L L K V GT +DA Sbjct 86 DVSAESWLVADMDSGAVIAARDPHGRHRPASVIKVLTAMAALNELDLAKVVPGTQEDANA 145 Query 151 EGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDT 210 EGT+VGV GG +TVNQLLHGLLM SGNDAA+ALA +LGGM AL KIN LAA+LGGRDT Sbjct 146 EGTRVGVGPGGDFTVNQLLHGLLMGSGNDAAHALATELGGMDTALHKINALAARLGGRDT 205 Query 211 RVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQ 270 R ATPSGLDGPGMSTSAYDI LFYRYAW NPVFADIVATR F FPG+GD PGY LENDNQ Sbjct 206 RAATPSGLDGPGMSTSAYDIALFYRYAWNNPVFADIVATRNFAFPGYGDVPGYTLENDNQ 265 Query 271 LLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGF 330 LLYNYPGALGGKTGYTDDAGQTFVGAA+RDGRRL+ VLL GTRQPIPPW+QAA LLDYGF Sbjct 266 LLYNYPGALGGKTGYTDDAGQTFVGAASRDGRRLVAVLLRGTRQPIPPWQQAAQLLDYGF 325 Query 331 NTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGVAVIGALIVF 390 TP GT++GTLIEPDPSL++ R PAD PQA A D +PVRVGV++ G +IVF Sbjct 326 ATPPGTRVGTLIEPDPSLVT--RAPADGP--SPQAMMLAPADDTVPVRVGVSIFGTIIVF 381 Query 391 GLIMVARAMNRRP 403 LIM AR++NRRP Sbjct 382 ALIMGARSLNRRP 394 >gi|120402569|ref|YP_952398.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii PYR-1] gi|119955387|gb|ABM12392.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii PYR-1] Length=403 Score = 521 bits (1343), Expect = 6e-146, Method: Compositional matrix adjust. Identities = 278/404 (69%), Positives = 317/404 (79%), Gaps = 4/404 (0%) Query 1 MAFLRSVSCLAAAVFAVGTGIGLPTAAGEPNAAPAACPYKVSTPPAVDSSEVPAAGEP-P 59 MA LR++ ++A+ I P AA +P A CPY+V+TPPAVD+SEVP G+P P Sbjct 1 MATLRTLLTRSSALVTAAMLILAPVAAAQPPAEANTCPYRVTTPPAVDASEVPKPGDPTP 60 Query 60 LPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRP 119 PL VP P+GG+AL GCG+ITAPG+ P P DVSAEAWLVADLDSG VIAARDPHGRHRP Sbjct 61 GPLPVPAKPMGGDALSGCGVITAPGTPPVPADVSAEAWLVADLDSGDVIAARDPHGRHRP 120 Query 120 ASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGND 179 AS+IKVL AM +IN L L+K + GT +DAA EGTKVGV GG Y++N LLHGLLM+SGND Sbjct 121 ASIIKVLTAMQAINDLPLHKVIPGTEEDAAQEGTKVGVGPGGFYSINDLLHGLLMYSGND 180 Query 180 AAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQ 239 AA+ALA Q+GGM AL KIN LA KLG RDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQ Sbjct 181 AAHALAMQMGGMQTALNKINALAGKLGARDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQ 240 Query 240 NPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANR 299 NPVF DIVATR+ +FPG D GY +ENDN+LL NYPGALGGKTG+TDDAGQTFVGAA R Sbjct 241 NPVFTDIVATRSSNFPGR-DGAGYPIENDNKLLANYPGALGGKTGFTDDAGQTFVGAATR 299 Query 300 DGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQ 359 DGRRL+ VLL GTRQPI PWEQAA LLDYGF T GT++G+LIEPDPSL T +PA Sbjct 300 DGRRLVAVLLRGTRQPIAPWEQAARLLDYGFATAPGTKVGSLIEPDPSLGVTRADPAAAT 359 Query 360 RVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRP 403 A + DA+PVR+GV VIGA+IVF LIM ARA+NRRP Sbjct 360 TTTANAV--LPDVDAMPVRIGVGVIGAVIVFSLIMGARALNRRP 401 >gi|145225445|ref|YP_001136123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum PYR-GCK] gi|315445798|ref|YP_004078677.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] gi|145217931|gb|ABP47335.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum PYR-GCK] gi|315264101|gb|ADU00843.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1] Length=407 Score = 510 bits (1313), Expect = 2e-142, Method: Compositional matrix adjust. Identities = 263/368 (72%), Positives = 296/368 (81%), Gaps = 4/368 (1%) Query 39 YKVSTPPAVDSSEVPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAW 97 Y+V+TPPAVD+SEVP G+P P PL VP P+GG+AL GCG+ITAPG+ P PGDVSAEAW Sbjct 39 YRVTTPPAVDASEVPKPGDPTPGPLPVPAKPMGGDALSGCGVITAPGTPPVPGDVSAEAW 98 Query 98 LVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGV 157 LVADLDSG VIAARDPHGRHRPAS+IKVL AM ++ L L K+V GT +DAA EGTKVGV Sbjct 99 LVADLDSGDVIAARDPHGRHRPASIIKVLTAMQALRDLPLMKTVPGTPEDAAQEGTKVGV 158 Query 158 NTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSG 217 GG YTVN LLHGLLM+SGNDAA+ALA Q+GGM AL KIN+LA KLG RDTRVATPSG Sbjct 159 GEGGVYTVNDLLHGLLMYSGNDAAHALAMQMGGMDTALNKINVLAQKLGARDTRVATPSG 218 Query 218 LDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPG 277 LDGPGMSTS YD+GLFYRYAW NPVFADIVATR FPG + GY +ENDN+LL NYPG Sbjct 219 LDGPGMSTSVYDMGLFYRYAWHNPVFADIVATRATQFPGR-EGAGYPIENDNKLLANYPG 277 Query 278 ALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQ 337 ALGGKTGYTDDAGQTFVGAA RDGRRL+ VL+ GTRQPI PWEQAA LLDYGF T GT+ Sbjct 278 ALGGKTGYTDDAGQTFVGAAERDGRRLVAVLMRGTRQPIAPWEQAARLLDYGFATAPGTK 337 Query 338 IGTLIEPDPSLMSTDRNP--ADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIMV 395 +GTLIEPDPSL +P A + + A A + DA+PVR+GV VIGA+IV LIM Sbjct 338 VGTLIEPDPSLGVDRADPAVAALTKTNANANAVLPDVDAMPVRIGVGVIGAVIVLTLIMG 397 Query 396 ARAMNRRP 403 ARA+N RP Sbjct 398 ARALNSRP 405 >gi|108798187|ref|YP_638384.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS] gi|119867283|ref|YP_937235.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS] gi|108768606|gb|ABG07328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS] gi|119693372|gb|ABL90445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS] Length=410 Score = 502 bits (1292), Expect = 6e-140, Method: Compositional matrix adjust. Identities = 267/371 (72%), Positives = 307/371 (83%), Gaps = 5/371 (1%) Query 37 CPYKVSTPPAVDSSEVPAAGE-PPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAE 95 CPY+V+TPPAVD+SEVP G+ PP+ L VP TP+GG+AL GCGIITAPG+ PAP DVSAE Sbjct 43 CPYRVTTPPAVDASEVPKPGQDPPVALPVPATPLGGDALSGCGIITAPGAPPAPADVSAE 102 Query 96 AWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV 155 AWLVAD+D+G VIAARDPHGRHRPASVIKVL+A+ S+ L L K+V GT +D A EGT V Sbjct 103 AWLVADMDTGEVIAARDPHGRHRPASVIKVLIAIQSLKELNLAKAVPGTPEDGAAEGTSV 162 Query 156 GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATP 215 GV+ GG YTVN LLHGLLM+SGNDAA+ALARQLGGM AL K+N LA KLGGRDTRVATP Sbjct 163 GVDVGGLYTVNDLLHGLLMYSGNDAAHALARQLGGMDTALLKLNQLAGKLGGRDTRVATP 222 Query 216 SGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNY 275 SGLDGPGMSTSAYDI LFYRYAW+NP F +IVATRT+DFPG +P Y +END +LLYNY Sbjct 223 SGLDGPGMSTSAYDIALFYRYAWRNPTFTEIVATRTYDFPGRDGNPPYPIENDVKLLYNY 282 Query 276 PGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAG 335 PGALGGKTG+TDDAGQTFVG A RDGRRL+ VLL GTRQPI PWEQAA LLDYGF P G Sbjct 283 PGALGGKTGFTDDAGQTFVGGAERDGRRLVAVLLRGTRQPIAPWEQAARLLDYGFGLPQG 342 Query 336 TQIGTLIEPDPSLMSTDRNP-ADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIM 394 T++G+LIEPDPSL D +P QAAA + AADA+PVRVGV VIG+++VF L+M Sbjct 343 TKVGSLIEPDPSL---DPSPQTAETEAAAQAAAVLPAADAMPVRVGVGVIGSIVVFALMM 399 Query 395 VARAMNRRPQH 405 AR++NRRPQ+ Sbjct 400 AARSLNRRPQN 410 >gi|126433845|ref|YP_001069536.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS] gi|126233645|gb|ABN97045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS] Length=410 Score = 501 bits (1290), Expect = 9e-140, Method: Compositional matrix adjust. Identities = 266/371 (72%), Positives = 307/371 (83%), Gaps = 5/371 (1%) Query 37 CPYKVSTPPAVDSSEVPAAGE-PPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAE 95 CPY+V+TPPAVD+SEVP G+ PP+ L VP TP+GG+AL GCGIITAPG+ PAP DVSAE Sbjct 43 CPYRVTTPPAVDASEVPKPGQDPPVALPVPATPLGGDALSGCGIITAPGAPPAPADVSAE 102 Query 96 AWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV 155 AWLVAD+D+G VIAARDPHGRHRPASVIKVL+A+ S+ L L K+V GT +D A EGT V Sbjct 103 AWLVADMDTGEVIAARDPHGRHRPASVIKVLIAIQSLKELNLAKAVPGTPEDGAAEGTSV 162 Query 156 GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATP 215 GV+ GG YTVN LLHGLLM+SGNDAA+ALARQLGGM AL K+N LA KLGGRDTRVATP Sbjct 163 GVDVGGLYTVNDLLHGLLMYSGNDAAHALARQLGGMDTALLKLNQLAGKLGGRDTRVATP 222 Query 216 SGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNY 275 SGLDGPGMSTSAYD+ LFYRYAW+NP F +IVATRT+DFPG +P Y +END +LLYNY Sbjct 223 SGLDGPGMSTSAYDVALFYRYAWRNPTFTEIVATRTYDFPGRDGNPPYPIENDVKLLYNY 282 Query 276 PGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAG 335 PGALGGKTG+TDDAGQTFVG A RDGRRL+ VLL GTRQPI PWEQAA LLDYGF P G Sbjct 283 PGALGGKTGFTDDAGQTFVGGAERDGRRLVAVLLRGTRQPIAPWEQAARLLDYGFGLPQG 342 Query 336 TQIGTLIEPDPSLMSTDRNP-ADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIM 394 T++G+LIEPDPSL D +P QAAA + AADA+PVRVGV VIG+++VF L+M Sbjct 343 TKVGSLIEPDPSL---DPSPQTAETEAAAQAAAVLPAADAMPVRVGVGVIGSIVVFALMM 399 Query 395 VARAMNRRPQH 405 AR++NRRPQ+ Sbjct 400 AARSLNRRPQN 410 >gi|118471047|ref|YP_886038.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] gi|118172334|gb|ABK73230.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str. MC2 155] Length=397 Score = 497 bits (1280), Expect = 1e-138, Method: Compositional matrix adjust. Identities = 264/373 (71%), Positives = 302/373 (81%), Gaps = 12/373 (3%) Query 37 CPYKVSTPPAVDSSEVPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAE 95 CPY+ +TPPAVD+SEVP GE P PL VPP +GG AL GCG+ITAP + P P DVSAE Sbjct 33 CPYRETTPPAVDASEVPKPGEAAPGPLPVPPKAIGGEALSGCGVITAPNTPPVPEDVSAE 92 Query 96 AWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV 155 AW+VAD+D+G VIAARDPHGRHRPAS+IKVL A A++N L LNK VAGT DDA EGT+V Sbjct 93 AWIVADMDTGDVIAARDPHGRHRPASIIKVLTATAALNELNLNKRVAGTQDDANAEGTRV 152 Query 156 GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATP 215 GV GG YT+N LLHGLLM+SGNDAA+ALA QLGG AL+K+N LAAKLGGRDTR ATP Sbjct 153 GVGPGGQYTINDLLHGLLMYSGNDAAHALAMQLGGWDPALQKLNTLAAKLGGRDTRAATP 212 Query 216 SGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNY 275 SGLDGPGMSTSAYDI LFYRYAWQNPVFADIV T+++ FPG D Y +ENDN+LL NY Sbjct 213 SGLDGPGMSTSAYDIALFYRYAWQNPVFADIVHTQSYQFPGR-DGGSYPIENDNKLLANY 271 Query 276 PGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAG 335 PGALGGKTGYTDDAGQTFVGAA RDGRRL+ VLL GTR PI PWEQAA LLDYGF TP G Sbjct 272 PGALGGKTGYTDDAGQTFVGAAERDGRRLIAVLLKGTRVPIAPWEQAARLLDYGFATPPG 331 Query 336 TQIGTLIEPDPSLMSTDRNPADRQRVDP---QAAARISAADALPVRVGVAVIGALIVFGL 392 T++GTL++PDPSL A +Q +P QAA+ + ADA+PVRVGVAV+GA+IVF L Sbjct 332 TKVGTLVDPDPSL-------APKQAEEPSPAQAASVLPPADAMPVRVGVAVVGAIIVFML 384 Query 393 IMVARAMNRRPQH 405 I+ AR +N+RPQH Sbjct 385 ILGARQLNQRPQH 397 >gi|169630760|ref|YP_001704409.1| penicillin-binding protein DacB1 [Mycobacterium abscessus ATCC 19977] gi|169242727|emb|CAM63755.1| Probable penicillin-binding protein DacB1 [Mycobacterium abscessus] Length=429 Score = 488 bits (1256), Expect = 7e-136, Method: Compositional matrix adjust. Identities = 248/390 (64%), Positives = 295/390 (76%), Gaps = 13/390 (3%) Query 24 PTAAGEPNAAP---AACPYKVSTPPAVDSSEVPAAG-EPPLPLVVPPTPVGGNALGGCGI 79 P A+ EP P + CPYKV TPPAVD+SEVP AG +PP PL VP P+GG LG C + Sbjct 40 PLASAEPGFTPPDTSGCPYKVVTPPAVDTSEVPKAGGDPPAPLPVPAKPIGGEMLGRCDV 99 Query 80 ITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNK 139 IT G+ P P D+SAE+WL+ADL++G V+AA+DPH RHRPASVIKVLVAM +IN L LN+ Sbjct 100 ITPDGAGPVPNDISAESWLIADLNTGNVVAAKDPHARHRPASVIKVLVAMEAINNLNLNQ 159 Query 140 SVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKIN 199 +V GT +DA EGT+VGV+ GGTYTV QLL GLLM+SGNDAA+ALA QLGGM + KIN Sbjct 160 AVVGTQEDANSEGTRVGVDVGGTYTVRQLLTGLLMNSGNDAAHALAVQLGGMDETVAKIN 219 Query 200 LLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGH-- 257 +A KLG RDTR ATPSGLDGPGMSTSAYD+GLFY+YA+ +P FAD+V+ FPGH Sbjct 220 DMAQKLGARDTRAATPSGLDGPGMSTSAYDLGLFYKYAFADPTFADLVSAPKATFPGHPA 279 Query 258 -----GDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGT 312 DHP YE+ NDN+LLYNYPGALGGKTGYTDDA QTFVGAA RDGRRL+ +L GT Sbjct 280 KPGERDDHPAYEMTNDNKLLYNYPGALGGKTGYTDDAQQTFVGAAERDGRRLVVTMLRGT 339 Query 313 RQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAA 372 R PI PWEQAAHLLDYGF+TP IG L++PDPSL++ AD A A Sbjct 340 RLPIAPWEQAAHLLDYGFSTPRDASIGKLVDPDPSLLTKPH--ADDTPSAQAAGLPAEAI 397 Query 373 DALPVRVGVAVIGALIVFGLIMVARAMNRR 402 +++PVRVGV +IGA+IVFGLI+ AR++NRR Sbjct 398 NSVPVRVGVTIIGAMIVFGLILAARSLNRR 427 >gi|467182|gb|AAA17340.1| L308_F1_36 [Mycobacterium leprae] Length=228 Score = 378 bits (970), Expect = 1e-102, Method: Compositional matrix adjust. Identities = 183/232 (79%), Positives = 203/232 (88%), Gaps = 4/232 (1%) Query 174 MHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLF 233 M SGNDAA++LA QLGGM AL+KIN+LAAKLGG+DTRVATPSGLDGPGMSTSAYDIGLF Sbjct 1 MQSGNDAAHSLAMQLGGMQQALQKINVLAAKLGGQDTRVATPSGLDGPGMSTSAYDIGLF 60 Query 234 YRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTF 293 YRYAWQNP F++IVATRTF+FPG GDHPGY+LENDNQLLY YPGALGGKTGYTDDAGQTF Sbjct 61 YRYAWQNPSFSNIVATRTFNFPGPGDHPGYQLENDNQLLYQYPGALGGKTGYTDDAGQTF 120 Query 294 VGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIEPDPSLMSTDR 353 VGAANR+GRRLM VLLHGTRQPI PWEQAAHLLDYGF+T GTQIGTLIEPDP++ Sbjct 121 VGAANRNGRRLMAVLLHGTRQPIAPWEQAAHLLDYGFSTAVGTQIGTLIEPDPTVAGN-- 178 Query 354 NPADRQRVDPQAAARISAADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH 405 ADR QAA +S+ D LPVR+GVAV+G LIVFGLIM+ R++NRRPQH Sbjct 179 --ADRHGHGLQAAGIMSSNDTLPVRIGVAVVGTLIVFGLIMITRSLNRRPQH 228 >gi|229489552|ref|ZP_04383415.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis SK121] gi|229323649|gb|EEN89407.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis SK121] Length=429 Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 195/386 (51%), Positives = 258/386 (67%), Gaps = 25/386 (6%) Query 36 ACPYKVSTPPAVDSSEVPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSA 94 +CP+ S PA+D SE PA G P + +P +PVGG+ LG CG++ G+ P P D++A Sbjct 48 SCPFTSSPAPAIDLSEAPAPGSTAPTAVPIPESPVGGDKLGECGVVLPDGAPPLPADIAA 107 Query 95 EAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTK 154 W++AD ++G V+AA+DPHGR+RPAS IK+L+A+ +++ L L+ + TA+DA EG+ Sbjct 108 SGWVLADAETGEVLAAKDPHGRYRPASTIKMLLALVALDELDLDTEITATAEDADAEGSA 167 Query 155 VGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVAT 214 VG+ GG YT QL+ GL+M SGNDAA+ALARQLGG AA+ K+N LAA+LG DTR AT Sbjct 168 VGIGKGGKYTNRQLMQGLVMASGNDAAHALARQLGGDAAAVSKMNALAAELGALDTRTAT 227 Query 215 PSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGH---------GDHPGYEL 265 PSGLDGPGMS+S+YD+ + + A QNP FA ++ T T +FPG D PG+ L Sbjct 228 PSGLDGPGMSSSSYDLAVIFHTALQNPTFAGLIHTETVEFPGFPKDPTIPDDQDRPGFTL 287 Query 266 ENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHL 325 NDNQLLYNY GALGGKTG+TDDA T+VGAA R+GR+L+ L+ G +PI PWEQAA L Sbjct 288 ANDNQLLYNYDGALGGKTGFTDDARHTYVGAAERNGRKLLVTLMGGEAKPIRPWEQAARL 347 Query 326 LDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAA--RISAA----DA---LP 376 LDYG+ PA T +G+L + STD D R P AAA ISAA DA Sbjct 348 LDYGYALPASTTVGSLTD-----RSTDDASPDVTRT-PSAAAPGSISAAPTATDAESDTT 401 Query 377 VRVGVAVIGALIVFGLIMVARAMNRR 402 R+ + +G ++V L+ A A+NRR Sbjct 402 DRILIGAVGGVVVIALVAGAVALNRR 427 >gi|226305499|ref|YP_002765459.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4] gi|226184616|dbj|BAH32720.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4] Length=437 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 192/386 (50%), Positives = 254/386 (66%), Gaps = 25/386 (6%) Query 36 ACPYKVSTPPAVDSSEVPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSA 94 +CP+ S PA+D SE PA G P + +P +PVGG+ LG CG++ G+ P P D++A Sbjct 56 SCPFTSSPAPAIDLSEAPAPGSTAPTAVPIPESPVGGDKLGECGVVLPDGAPPLPADIAA 115 Query 95 EAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTK 154 W++AD ++G V+AA+DPHGR+RPAS IK+L+A+ +++ L L+ + TA+DA EG+ Sbjct 116 SGWVLADAETGEVLAAKDPHGRYRPASTIKMLLALVALDELDLDTEITATAEDADAEGSA 175 Query 155 VGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVAT 214 VG+ GG YT QL+ GL+M SGNDAA+ALARQLGG AA+ K+N LA +LG DTR AT Sbjct 176 VGIGKGGKYTNRQLMQGLVMASGNDAAHALARQLGGDAAAVSKMNALAVELGALDTRTAT 235 Query 215 PSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGH---------GDHPGYEL 265 PSGLDGPGMS+S YD+ + + A QNP FA ++ T T +FPG D PG+ L Sbjct 236 PSGLDGPGMSSSPYDLAVIFHTALQNPTFAGLIHTETVEFPGFPKDPTIPDDQDRPGFTL 295 Query 266 ENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHL 325 NDNQLLYNY GALGGKTG+TDDA T+VGAA R+GR+L+ L+ G +PI PWEQAA L Sbjct 296 ANDNQLLYNYDGALGGKTGFTDDARHTYVGAAERNGRKLLVTLMGGEAKPIRPWEQAARL 355 Query 326 LDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAA--RISAA-------DALP 376 LDYG+ PA T +G+L + STD D R P AAA ISAA Sbjct 356 LDYGYALPASTTVGSLTD-----RSTDDATPDVTRT-PSAAAPGSISAAPTATDTESDTT 409 Query 377 VRVGVAVIGALIVFGLIMVARAMNRR 402 R+ + +G ++V L+ A A+NRR Sbjct 410 DRILIGAVGGVVVIALVAGAVALNRR 435 >gi|111023206|ref|YP_706178.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1] gi|110822736|gb|ABG98020.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1] Length=431 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 194/388 (50%), Positives = 253/388 (66%), Gaps = 27/388 (6%) Query 37 CPYKVSTPPAVDSSEVPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPA-PGDVSA 94 CP + + PA+D SEVP G+P P + VP PVGG L CG+I P APA P D++A Sbjct 48 CPNRSAPAPAIDLSEVPQPGDPAPSAVSVPDEPVGGPKLAECGVIL-PDDAPALPADIAA 106 Query 95 EAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTK 154 W+VAD+D+G V+AA+DPHGR+RPAS IK+L+A+ +++ L L+K+V TA+DAAVEG+ Sbjct 107 SGWVVADIDTGDVLAAKDPHGRYRPASTIKMLLALVALSELDLDKTVTATAEDAAVEGSA 166 Query 155 VGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVAT 214 VG+ G YT QL+ GL+M SGNDAA+ LARQLGG A ++K+N LA LG DTR AT Sbjct 167 VGIGKNGQYTNRQLMQGLVMASGNDAAHLLARQLGGDAATVDKMNHLADTLGAHDTRTAT 226 Query 215 PSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGH---------GDHPGYEL 265 PSGLDGPGMS+S +D+ L + A +NP FA++++T T FPG D P + L Sbjct 227 PSGLDGPGMSSSPFDLALIFHTAMKNPTFAELISTETVQFPGFPKDPAIPDDQDRPPFAL 286 Query 266 ENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHL 325 NDNQLLYNY GALGGKTG+TDDA T+VG A+ DGRRLM L+ QPI PWEQAA L Sbjct 287 ANDNQLLYNYDGALGGKTGFTDDARHTYVGGADHDGRRLMVTLMGAEAQPIRPWEQAARL 346 Query 326 LDYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQ---AAARISAA--------DA 374 LDYGF Q+G+L + L T+ + A PQ AAA S + Sbjct 347 LDYGFALDRDAQVGSLED----LYPTESDSAAVLAAPPQQDSAAATSSVVASGSDHPHNT 402 Query 375 LPVRVGVAVIGALIVFGLIMVARAMNRR 402 L +R GV ++G +V L++ AR ++RR Sbjct 403 LALRAGVGIVGTAVVLMLVLGARRLSRR 430 >gi|312140773|ref|YP_004008109.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S] gi|311890112|emb|CBH49430.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi 103S] Length=444 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 188/379 (50%), Positives = 251/379 (67%), Gaps = 15/379 (3%) Query 36 ACPYKVSTPPAVDSSEVPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSA 94 ACP+++S PPA+D SEVP GE P P+ VP PVGG ALG CG++TAPG+ P P ++SA Sbjct 62 ACPHRLSPPPAIDLSEVPRPGETAPAPVPVPDEPVGGAALGNCGVVTAPGTPPLPAEISA 121 Query 95 EAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTK 154 W+++DLD+G V+AA+DPHGR+RPAS IKVL+A+ +++ L L+ ++ + + A++EG+ Sbjct 122 TGWVLSDLDTGQVLAAKDPHGRYRPASTIKVLLALVALDELDLDTTIVASPEAASMEGSS 181 Query 155 VGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVAT 214 VG+ GGTY+ QL+ GL+M SGNDAA ALA+QLGG A + K+N AA LG DTR A+ Sbjct 182 VGLGAGGTYSNLQLMQGLVMRSGNDAAQALAQQLGGEQATVAKMNAKAASLGASDTRTAS 241 Query 215 PSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPG---------YEL 265 SGLDGPGMSTS YD+ LF+R A QNP FA ++ T T FPGH P Y + Sbjct 242 VSGLDGPGMSTSPYDLALFFRAAMQNPTFAGLITTDTVMFPGHPADPTKPDDKPVDPYPI 301 Query 266 ENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHL 325 NDNQLL NYPGALGGKTGYTDDA QTFVG A RDGRRL L+ PI PWEQ L Sbjct 302 FNDNQLLANYPGALGGKTGYTDDARQTFVGGAERDGRRLAVTLMAADVLPIRPWEQVGRL 361 Query 326 LDYGFNTPAGTQIGTLIEP----DPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGV 381 LDYG+ +G L++P +P++ +D + + + + + RV + Sbjct 362 LDYGWALDPAVSVGVLVDPKGADEPAVQVAGPETHGPGGMDLASGSDLPNKE-VAGRVAI 420 Query 382 AVIGALIVFGLIMVARAMN 400 ++G+ IV GL+ ARA+ Sbjct 421 GIVGSGIVLGLLGWARALT 439 >gi|325675587|ref|ZP_08155271.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC 33707] gi|325553558|gb|EGD23236.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC 33707] Length=444 Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 188/379 (50%), Positives = 250/379 (66%), Gaps = 15/379 (3%) Query 36 ACPYKVSTPPAVDSSEVPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSA 94 ACP+++S PPA+D SEVP GE P P+ VP PVGG ALG CG++TAPG+ P P ++SA Sbjct 62 ACPHRLSPPPAIDLSEVPRPGETAPAPVPVPDEPVGGAALGNCGVVTAPGTPPLPAEISA 121 Query 95 EAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTK 154 W+++DLD+G V+AA+DPHGR+RPAS IKVL+A+ +++ L L+ ++ + A++EG+ Sbjct 122 TGWVLSDLDTGQVLAAKDPHGRYRPASTIKVLLALVALDELDLDTTIVANPEAASMEGSS 181 Query 155 VGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVAT 214 VG+ GGTY+ QL+ GL+M SGNDAA ALA+QLGG A + K+N AA LG DTR A+ Sbjct 182 VGLGAGGTYSNLQLMQGLVMRSGNDAAQALAQQLGGEQATVAKMNAKAASLGASDTRTAS 241 Query 215 PSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPG---------YEL 265 SGLDGPGMSTS YD+ LF+R A QNP FA ++ T T FPGH P Y + Sbjct 242 VSGLDGPGMSTSPYDLALFFRAAMQNPTFAGLITTDTVMFPGHPADPTKPDDKPVDPYPI 301 Query 266 ENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHL 325 NDNQLL NYPGALGGKTGYTDDA QTFVG A RDGRRL L+ PI PWEQ L Sbjct 302 FNDNQLLANYPGALGGKTGYTDDARQTFVGGAERDGRRLAVTLMAADVLPIRPWEQVGRL 361 Query 326 LDYGFNTPAGTQIGTLIEP----DPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGV 381 LDYG+ +G L++P +P++ +D + + + + + RV + Sbjct 362 LDYGWALDPAVSVGVLVDPKGADEPAVQVAGPETHGPGGMDLASGSDLPNKE-VAGRVAI 420 Query 382 AVIGALIVFGLIMVARAMN 400 ++G+ IV GL+ ARA+ Sbjct 421 GIVGSGIVLGLLGWARALT 439 >gi|226365711|ref|YP_002783494.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4] gi|226244201|dbj|BAH54549.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4] Length=426 Score = 345 bits (886), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 172/315 (55%), Positives = 221/315 (71%), Gaps = 10/315 (3%) Query 37 CPYKVSTPPAVDSSEVPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAE 95 CP++ + PA+D SEVP G+P P + VP PVGG L CG+ G+ P D++A Sbjct 43 CPHRSAPAPAIDLSEVPQPGDPAPTAVSVPDEPVGGPKLAECGVALPDGAPALPADIAAS 102 Query 96 AWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV 155 W+VAD+DSG V+AA+DPHGR+RPAS IK+L+A+ +++ L L+K+V TA+DAAVEG+ V Sbjct 103 GWVVADIDSGDVLAAKDPHGRYRPASTIKMLLALVALDELDLDKTVTATAEDAAVEGSAV 162 Query 156 GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATP 215 G+ G YT QL+ GL+M SGNDAA+ LARQLGG A +EK+N LA LG DTR ATP Sbjct 163 GIGKNGQYTNRQLMQGLVMASGNDAAHLLARQLGGDAATVEKMNRLADTLGAHDTRTATP 222 Query 216 SGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPG---------HGDHPGYELE 266 SGLDGPGMS+S +D+ L + A +NP FA++++T T FPG D P + L Sbjct 223 SGLDGPGMSSSPFDLALIFHNAMKNPTFAELISTETVQFPGFPKDPAIPEDQDRPPFALA 282 Query 267 NDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLL 326 NDNQLLYNYPGALGGKTG+TDDA T+VG A+ DGRRLM L+ QPI PWEQAA LL Sbjct 283 NDNQLLYNYPGALGGKTGFTDDARHTYVGGADHDGRRLMVTLMGAEAQPIRPWEQAARLL 342 Query 327 DYGFNTPAGTQIGTL 341 DYGF +++G+L Sbjct 343 DYGFALDRDSRVGSL 357 >gi|54022905|ref|YP_117147.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152] gi|54014413|dbj|BAD55783.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152] Length=434 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 192/370 (52%), Positives = 243/370 (66%), Gaps = 13/370 (3%) Query 37 CPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTP-VGGNALGGCGIITAPGSAPAPGDVSAE 95 CP K PPAVD+SEVPA GEP + P P +GG +G CG++ + P P D+SA Sbjct 54 CPQKNVPPPAVDTSEVPAPGEPAPTPLPVPVPPIGGARMGECGVVVPDDAPPLPRDISAT 113 Query 96 AWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV 155 AW+V+DLD+G V+AA+DPHGR+RPAS IKVL+A+ ++ TL L++ V GT DA V+GT+V Sbjct 114 AWMVSDLDTGEVLAAKDPHGRYRPASTIKVLLAIVALRTLDLDRVVTGTQADADVDGTRV 173 Query 156 GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATP 215 G+ GG YT QL+ L+M SGNDAA+A+A QLGG A + ++N +A L DTR ATP Sbjct 174 GIGPGGRYTNRQLMQALIMASGNDAAHAIAAQLGGDKATVARMNEVAKSLSAFDTRAATP 233 Query 216 SGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGH---------GDHPGYELE 266 SGLDGPGM+TSAYD+ L +R A P+FA+++ T DFPG+ DHPG+ + Sbjct 234 SGLDGPGMTTSAYDLSLLFREAMTIPLFAELIRTEQIDFPGYPKNPLIPDDTDHPGFPIG 293 Query 267 NDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLL 326 NDNQLLYNY GALGGKTG+TDDA QTFV AA RDGRRL+ LL PI PWEQAA LL Sbjct 294 NDNQLLYNYAGALGGKTGFTDDARQTFVAAAERDGRRLVVTLLKADVLPIRPWEQAARLL 353 Query 327 DYGFNTPAGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGVAVIGA 386 DYGF PAG +G+L P + +TD P + P +A A P R Sbjct 354 DYGFALPAGASVGSL--PGAATDATDTEP-NVVLAAPPPDDDETATAAQPERRHAGARTL 410 Query 387 LIVFGLIMVA 396 LIV GL+ +A Sbjct 411 LIVGGLVAIA 420 >gi|256380453|ref|YP_003104113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM 43827] gi|255924756|gb|ACU40267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM 43827] Length=669 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 169/310 (55%), Positives = 215/310 (70%), Gaps = 6/310 (1%) Query 37 CPYKVSTPPAVDSSE-VPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAE 95 C +VS PPAVD+SE VP PP PL VP P+GG+ +G CG + G+ AP ++A+ Sbjct 25 CENRVSPPPAVDTSEDVPDGARPPEPLEVPDPPIGGDRMGECGPVLPEGAPRAPSGITAK 84 Query 96 AWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV 155 WLVAD+DSGAV+AA DPHGR RPASVIKVL+AM + L L+ + +D E T + Sbjct 85 TWLVADMDSGAVLAAYDPHGRQRPASVIKVLLAMVAAKELPLDSQMTAIEEDTEQECTCI 144 Query 156 GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATP 215 G+ G TYTV QLL L+M SGND A ALAR+LGG+P+A+ K+N LA +LG RDTR TP Sbjct 145 GLKAGNTYTVEQLLQSLVMASGNDVANALARRLGGLPSAIRKMNALATELGARDTRAITP 204 Query 216 SGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGH--GDHPGYELENDNQLLY 273 SGLD PG STSAYD+ L +R A + P FA +AT+ +FP G P + NDN+L+ Sbjct 205 SGLDAPGTSTSAYDVALIFRAAMKYPDFARAIATQRIEFPAEEGGTKP---VINDNRLMT 261 Query 274 NYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTP 333 +Y GALGGKTG+TDDA T+VGAA RDGRRL+ VLL +QP+ +QAA LLDYGF+ P Sbjct 262 SYAGALGGKTGFTDDAQHTYVGAAERDGRRLVAVLLRAQQQPLRTTDQAARLLDYGFSLP 321 Query 334 AGTQIGTLIE 343 A T +G L++ Sbjct 322 ASTTVGKLVD 331 >gi|19551910|ref|NP_599912.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum ATCC 13032] gi|62389569|ref|YP_224971.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum ATCC 13032] gi|41324903|emb|CAF19385.1| D-ALANYL-D-ALANINE CARBOXYPEPTIDASE [Corynebacterium glutamicum ATCC 13032] Length=436 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 170/309 (56%), Positives = 212/309 (69%), Gaps = 4/309 (1%) Query 37 CPYKVSTPPAVDSSEVPAAG-EPPLPLVVPPTPVGGNALGGCGIITAPG-SAPAPGD--V 92 CPYK S PA +SEV A G + P + VP P GG L CG+IT G P D + Sbjct 66 CPYKESPSPARSTSEVVAPGAQTPALVPVPSVPAGGEKLATCGVITPNGFELPEDSDETI 125 Query 93 SAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEG 152 +A AW+V D+DSG +IAA+DPHGR+RPAS+IKVL+++ +I+ L V GT + A +EG Sbjct 126 TASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAIDELNPTTVVTGTMEAANIEG 185 Query 153 TKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRV 212 ++VGV GG YTV+QLLHGLL+ SGNDAAY LA++LGG A LEK+N LA +LG +DT V Sbjct 186 SRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGGDQATLEKVNALAKELGTQDTFV 245 Query 213 ATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLL 272 AT SGLD PGMSTSAYD+ L Y++AWQNPVF I++T DFPG GD+ G+++ NDN L Sbjct 246 ATYSGLDAPGMSTSAYDMSLIYQHAWQNPVFESIISTDHIDFPGWGDNEGFQVWNDNALF 305 Query 273 YNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNT 332 N P +GGKTGYTDDA TFVG +R GRRL VLL T I PWEQA L+D Sbjct 306 MNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQARLLIDASLPI 365 Query 333 PAGTQIGTL 341 G+ +G L Sbjct 366 TPGSGVGQL 374 >gi|21323446|dbj|BAB98073.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum ATCC 13032] Length=379 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 170/309 (56%), Positives = 212/309 (69%), Gaps = 4/309 (1%) Query 37 CPYKVSTPPAVDSSEVPAAG-EPPLPLVVPPTPVGGNALGGCGIITAPG-SAPAPGD--V 92 CPYK S PA +SEV A G + P + VP P GG L CG+IT G P D + Sbjct 9 CPYKESPSPARSTSEVVAPGAQTPALVPVPSVPAGGEKLATCGVITPNGFELPEDSDETI 68 Query 93 SAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEG 152 +A AW+V D+DSG +IAA+DPHGR+RPAS+IKVL+++ +I+ L V GT + A +EG Sbjct 69 TASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAIDELNPTTVVTGTMEAANIEG 128 Query 153 TKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRV 212 ++VGV GG YTV+QLLHGLL+ SGNDAAY LA++LGG A LEK+N LA +LG +DT V Sbjct 129 SRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGGDQATLEKVNALAKELGTQDTFV 188 Query 213 ATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLL 272 AT SGLD PGMSTSAYD+ L Y++AWQNPVF I++T DFPG GD+ G+++ NDN L Sbjct 189 ATYSGLDAPGMSTSAYDMSLIYQHAWQNPVFESIISTDHIDFPGWGDNEGFQVWNDNALF 248 Query 273 YNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNT 332 N P +GGKTGYTDDA TFVG +R GRRL VLL T I PWEQA L+D Sbjct 249 MNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQARLLIDASLPI 308 Query 333 PAGTQIGTL 341 G+ +G L Sbjct 309 TPGSGVGQL 317 >gi|344043811|gb|EGV39499.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum S9114] Length=401 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 171/309 (56%), Positives = 213/309 (69%), Gaps = 4/309 (1%) Query 37 CPYKVSTPPAVDSSEVPAAG-EPPLPLVVPPTPVGGNALGGCGIITAPG-SAPAPGD--V 92 CPYK S PA +SEV A G + P P+ VP P GG L CG+IT G P D + Sbjct 31 CPYKESPSPARSTSEVVAPGAQTPAPVPVPSVPAGGEKLATCGVITPNGFELPEDSDETI 90 Query 93 SAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEG 152 +A AW+V D+DSG +IAA+DPHGR+RPAS+IKVL+++ +I+ L V GT + A +EG Sbjct 91 TASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAIDELNPTTVVTGTMEAANIEG 150 Query 153 TKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRV 212 ++VGV GG YTV+QLLHGLL+ SGNDAAY LA++LGG A LEK+N LA +LG +DT V Sbjct 151 SRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGGDQATLEKVNALAKELGTQDTFV 210 Query 213 ATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLL 272 AT SGLD PGMSTSAYD+ L Y++AWQNPVF I++T DFPG GD+ G+++ NDN L Sbjct 211 ATYSGLDAPGMSTSAYDMSLIYQHAWQNPVFESIISTDHIDFPGWGDNEGFQVWNDNALF 270 Query 273 YNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNT 332 N P +GGKTGYTDDA TFVG +R GRRL VLL T I PWEQA L+D Sbjct 271 MNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLLDATVSDIRPWEQARLLIDASLPI 330 Query 333 PAGTQIGTL 341 G+ +G L Sbjct 331 TPGSGVGQL 339 >gi|145294853|ref|YP_001137674.1| hypothetical protein cgR_0800 [Corynebacterium glutamicum R] gi|140844773|dbj|BAF53772.1| hypothetical protein [Corynebacterium glutamicum R] Length=436 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 171/309 (56%), Positives = 213/309 (69%), Gaps = 4/309 (1%) Query 37 CPYKVSTPPAVDSSEVPAAG-EPPLPLVVPPTPVGGNALGGCGIITAPG-SAPAPGD--V 92 CPYK S PA +SEV A G + P P+ VP P GG L CG+IT G P D + Sbjct 66 CPYKESPSPARSTSEVVAPGAQTPAPVPVPSVPAGGEKLATCGVITPNGFELPEDSDETI 125 Query 93 SAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEG 152 +A AW+V D+DSG +IAA+DPHGR+RPAS+IKVL+++ +I+ L V GT + A +EG Sbjct 126 TASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAIDELNPTTVVTGTMEAANIEG 185 Query 153 TKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRV 212 ++VGV GG YTV+QLLHGLL+ SGNDAAY LA++LGG A LEK+N LA +LG +DT V Sbjct 186 SRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQELGGDQATLEKVNALAKELGTQDTFV 245 Query 213 ATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLL 272 AT SGLD PGMSTSAYD+ L Y++AWQNPVF I++T DFPG GD+ G+++ NDN L Sbjct 246 ATYSGLDAPGMSTSAYDMSLIYQHAWQNPVFESIISTDHIDFPGWGDNEGFQVWNDNALF 305 Query 273 YNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNT 332 N P +GGKTGYTDDA TFVG +R GRRL VLL T I PWEQA L+D Sbjct 306 MNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQARLLIDASLPI 365 Query 333 PAGTQIGTL 341 G+ +G L Sbjct 366 TPGSGVGQL 374 >gi|257054601|ref|YP_003132433.1| D-alanyl-D-alanine carboxypeptidase [Saccharomonospora viridis DSM 43017] gi|256584473|gb|ACU95606.1| D-alanyl-D-alanine carboxypeptidase [Saccharomonospora viridis DSM 43017] Length=410 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 190/407 (47%), Positives = 244/407 (60%), Gaps = 11/407 (2%) Query 4 LRSVSCLAAAVFAVGTGIGLPTAAGEP-NAAPAACPYKVSTPPAVDSSEVPAAGE-PPLP 61 +R++ L GT + + T E +P CP + PP VD SE P GE P P Sbjct 7 IRTLFALFVTALLAGTSVLVATPPAEAATESPTECPNRTLPPPPVDKSEEPPPGEQSPTP 66 Query 62 LVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPAS 121 L VP TP GG + CGI+ S P D++A AWLV DLD+G V+AA++PHGR+RPAS Sbjct 67 LPVPETPAGGERMAECGIVRPADSPEPPEDITAAAWLVQDLDTGYVLAAKNPHGRYRPAS 126 Query 122 VIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAA 181 +IK L+A+ + L + V T +DA E T VG+ GG YTV+QL+H LLMHSGND A Sbjct 127 LIKTLLALVVLEELPPDHVVVATKEDANQECTCVGLVEGGEYTVDQLIHALLMHSGNDVA 186 Query 182 YALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNP 241 +ALA LGG+ AA+EK+N LA LG DTR ATPSGLDGPGM TSAYD+ L +RYA Q P Sbjct 187 HALATALGGVDAAVEKMNALAEWLGAADTRAATPSGLDGPGMMTSAYDMSLIFRYAMQQP 246 Query 242 VFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDG 301 +A+ V T+ DFPG P + + NDN L +Y G LGGKTG+TDDA T+VGAA RDG Sbjct 247 AYAEAVGTKHIDFPGGPGEPDFPVYNDNPLWASYEGFLGGKTGFTDDARHTYVGAAERDG 306 Query 302 RRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQ--IGTLIEPDPSLMSTDRNPADRQ 359 RR+ VLL +QPI EQA LLDYGF A + +GT + P S D D + Sbjct 307 RRIAVVLLQAEQQPIRVAEQAQRLLDYGFGLAAAGKEPVGT-VTTAPPFSSVDE---DGE 362 Query 360 RVDPQAAARISAADALPVR--VGVAVIGALIVFGLIMVARA-MNRRP 403 D A S +D + ++ L++ GL++ R + RRP Sbjct 363 GTDVIDVATTSPSDPFGTTGWIVTLIVTVLVLTGLLVGHRKGLLRRP 409 >gi|333921635|ref|YP_004495216.1| serine-type D-Ala-D-Ala carboxypeptidase [Amycolicicoccus subflavus DQS3-9A1] gi|333483856|gb|AEF42416.1| Serine-type D-Ala-D-Ala carboxypeptidase [Amycolicicoccus subflavus DQS3-9A1] Length=443 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 165/371 (45%), Positives = 232/371 (63%), Gaps = 19/371 (5%) Query 48 DSSEVPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGA 106 DSSE P G+ P PL +P +PVGG L C ++ APG+ P ++SA +WLVADLD+G Sbjct 74 DSSEEPQPGQTAPTPLPIPDSPVGGPLLADCELVLAPGAPEPPEEISAASWLVADLDTGD 133 Query 107 VIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVN 166 V+AA+DPHGRHRPAS IK L+A+ + + + L +++ GT +DA +EG++ G+ GG YT Sbjct 134 VLAAKDPHGRHRPASTIKTLLALVAFDEIDLGRTIIGTTEDANIEGSRAGIGPGGEYTNE 193 Query 167 QLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTS 226 L+ L+M SGNDAA A+A+QLGG+ + K+N AA+LG DTR ATPSGLDGPGMS+S Sbjct 194 ILMKALVMASGNDAANAIAQQLGGVDETVRKMNEYAAELGALDTRAATPSGLDGPGMSSS 253 Query 227 AYDIGLFYRYAWQNPVFADIVATRTFDFPGH---------GDHPGYELENDNQLLYNYPG 277 AYD+ + +R A +NPVF + + T DFPG+ D PG+ + NDN + + YP Sbjct 254 AYDLAVIFRAAMENPVFVEYLQTPHIDFPGYPADPATPGDFDRPGFAMGNDNVVNWMYPD 313 Query 278 ALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQ 337 ++GGK G+T+ A QT+VGAA RDGRRL+ ++ +P P W+Q A L DYGF + Sbjct 314 SIGGKNGFTNSARQTYVGAAERDGRRLIVSVMMAENEPKPVWQQVADLFDYGFGIGEEST 373 Query 338 IGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAAD------ALPVRVGVAVIGALIVFG 391 +GTL D + PAD + + +D ++ RV V +GAL+V Sbjct 374 VGTL---DARTSIDEAEPADESLAQALPPSSVPVSDPPAESPSMGQRVVVGSLGALVVAA 430 Query 392 LIMVARAMNRR 402 L+ A + RR Sbjct 431 LLYGAFRVGRR 441 >gi|259506608|ref|ZP_05749510.1| penicillin-binding protein [Corynebacterium efficiens YS-314] gi|259165806|gb|EEW50360.1| penicillin-binding protein [Corynebacterium efficiens YS-314] Length=438 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 174/370 (48%), Positives = 226/370 (62%), Gaps = 22/370 (5%) Query 37 CPYKVSTPPAVDSSE-VPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAE 95 CP+ S A +SE V G P+ L VP P GG + CG+I AP P + +A Sbjct 67 CPHLESPATARTTSEAVVPGGRAPVLLPVPEVPAGGPLMANCGVI-APEGFTLPENQTAS 125 Query 96 AWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV 155 AW+V DLDSG ++AA+DPHGR+RPAS+IK L+ + +I L + V GT D A +EG++V Sbjct 126 AWMVFDLDSGEILAAKDPHGRYRPASIIKALIGLIAIEQLDPTQKVTGTWDAANIEGSRV 185 Query 156 GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATP 215 GV GG YTV++LLHGLL+ SGNDAAY LA++LGG A LE +N A ++G DT VAT Sbjct 186 GVGEGGEYTVDELLHGLLLASGNDAAYLLAQELGGDEATLEMVNERAREIGTEDTFVATY 245 Query 216 SGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNY 275 SGLD PGMSTSAYD+ L Y++AW+NP FA IV T DFPG GD+ G+++ NDN L N Sbjct 246 SGLDAPGMSTSAYDMALIYQHAWKNPRFAQIVDTEFIDFPGWGDNEGFQVWNDNGLFMND 305 Query 276 PGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAG 335 P +GGKTGYTDDA TFVGA NR+GRR+ V+L T PWEQA L+D T G Sbjct 306 PDGIGGKTGYTDDANHTFVGALNREGRRIGAVILDTTIDKGRPWEQARELIDASLITLPG 365 Query 336 TQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAAD---------------ALPVRVG 380 +G L +P ++N QR +P + A D ALP+ Sbjct 366 AGVGQLGQP-----GGEQNTTPTQRPEPPVSPAPQAQDGGDGQDTTALDIARVALPISTI 420 Query 381 VAVIGALIVF 390 V ++ A +V+ Sbjct 421 VVLLLAALVW 430 >gi|25027255|ref|NP_737309.1| putative penicillin-binding protein [Corynebacterium efficiens YS-314] gi|23492536|dbj|BAC17509.1| putative penicillin-binding protein [Corynebacterium efficiens YS-314] Length=447 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 174/370 (48%), Positives = 226/370 (62%), Gaps = 22/370 (5%) Query 37 CPYKVSTPPAVDSSE-VPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAE 95 CP+ S A +SE V G P+ L VP P GG + CG+I AP P + +A Sbjct 76 CPHLESPATARTTSEAVVPGGRAPVLLPVPEVPAGGPLMANCGVI-APEGFTLPENQTAS 134 Query 96 AWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV 155 AW+V DLDSG ++AA+DPHGR+RPAS+IK L+ + +I L + V GT D A +EG++V Sbjct 135 AWMVFDLDSGEILAAKDPHGRYRPASIIKALIGLIAIEQLDPTQKVTGTWDAANIEGSRV 194 Query 156 GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATP 215 GV GG YTV++LLHGLL+ SGNDAAY LA++LGG A LE +N A ++G DT VAT Sbjct 195 GVGEGGEYTVDELLHGLLLASGNDAAYLLAQELGGDEATLEMVNERAREIGTEDTFVATY 254 Query 216 SGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNY 275 SGLD PGMSTSAYD+ L Y++AW+NP FA IV T DFPG GD+ G+++ NDN L N Sbjct 255 SGLDAPGMSTSAYDMALIYQHAWKNPRFAQIVDTEFIDFPGWGDNEGFQVWNDNGLFMND 314 Query 276 PGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAG 335 P +GGKTGYTDDA TFVGA NR+GRR+ V+L T PWEQA L+D T G Sbjct 315 PDGIGGKTGYTDDANHTFVGALNREGRRIGAVILDTTIDKGRPWEQARELIDASLITLPG 374 Query 336 TQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAAD---------------ALPVRVG 380 +G L +P ++N QR +P + A D ALP+ Sbjct 375 AGVGQLGQP-----GGEQNTTPTQRPEPPVSPAPQAQDGGDGQDTTALDIARVALPISTI 429 Query 381 VAVIGALIVF 390 V ++ A +V+ Sbjct 430 VVLLLAALVW 439 >gi|343926643|ref|ZP_08766141.1| D-alanyl-D-alanine carboxypeptidase [Gordonia alkanivorans NBRC 16433] gi|343763395|dbj|GAA13067.1| D-alanyl-D-alanine carboxypeptidase [Gordonia alkanivorans NBRC 16433] Length=434 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 170/352 (49%), Positives = 221/352 (63%), Gaps = 21/352 (5%) Query 13 AVFAVG-TGIGLPTAAGEPNAAPAA--------CPYKVSTPPAVDSSEVPAAGE-PPLPL 62 V A G G+G A P AP A CP+++ TPPAVD SEV A G PP L Sbjct 23 CVIAAGPAGVGRAGAVPVPTGAPPAFTTPVTDHCPHRIGTPPAVDESEVVAPGSTPPSSL 82 Query 63 VVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASV 122 VP +GG L CG++ P + P P +++ WL+ADLDSG VIAA+DPHGR+RPAS Sbjct 83 PVPTPAIGGEDLSYCGVVADPAAGPLPARLTSAGWLIADLDSGNVIAAKDPHGRYRPAST 142 Query 123 IKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAY 182 IKVL+A+ ++ L L+ +V TA+D + EG G+ GG YTV LL GLLM SGND A Sbjct 143 IKVLLALIVLDELDLDATVLPTAEDWSTEGDSCGMGPGGRYTVRDLLTGLLMVSGNDCAN 202 Query 183 ALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPV 242 ALAR+LGG+ LEK+N A +LG DTR A+PSGLD GMS+S YD+ L YR A Sbjct 203 ALARELGGVETTLEKMNARARELGASDTRAASPSGLDAAGMSSSPYDLALIYREAMAQGT 262 Query 243 FADIVATRTFDFPGH---------GDHPGYELENDNQLLYN-YPGALGGKTGYTDDAGQT 292 F +++A TF FPG+ DHP Y++ + N+LL + YPG LGGKTGYTDDA +T Sbjct 263 FRELIAKPTFRFPGYPRRPDVPGDKDHPPYDMYSSNRLLVDGYPGMLGGKTGYTDDARKT 322 Query 293 FVGAANRDGRRLMTVLLHG-TRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIE 343 FVGAA RDGRR++ V ++G + + W+QA + +YGF +G L+E Sbjct 323 FVGAAERDGRRILVVQMYGLSVEGDMYWDQAREMFEYGFRAGPEITVGRLVE 374 >gi|326381944|ref|ZP_08203637.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia neofelifaecis NRRL B-59395] gi|326199370|gb|EGD56551.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia neofelifaecis NRRL B-59395] Length=416 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/318 (51%), Positives = 210/318 (67%), Gaps = 12/318 (3%) Query 36 ACPYKVSTPPAVDSSEVPAAG-EPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSA 94 ACP++ TPPAVD SE A G P PL VP PVGG+ LGGCG++ PG+ P P +++ Sbjct 47 ACPHRTGTPPAVDESEAVAPGATAPAPLPVPDRPVGGDRLGGCGVVADPGAGPLPERLNS 106 Query 95 EAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTK 154 WL+ADLDSG VIAA+DPHGR+RPAS IKVL+A+ +++ L L+K V T +D ++EG Sbjct 107 AGWLIADLDSGRVIAAKDPHGRYRPASTIKVLLALVALDELPLDKQVEATPEDWSMEGDS 166 Query 155 VGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVAT 214 G+ GG YTV LL GL++ SGND A ALA QLGG AAL K+N AA+LG RDTR + Sbjct 167 CGMGPGGHYTVRDLLSGLVVVSGNDCANALAGQLGGHDAALAKMNAKAAELGARDTRATS 226 Query 215 PSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHG---------DHPGYEL 265 PSGLD PGMSTS YD+ L +R A N F +++ + + FPG+ DHP + + Sbjct 227 PSGLDAPGMSTSPYDLALLFREAMGNATFRQLISMKNYTFPGYPKRPDVPDDVDHPAWTM 286 Query 266 ENDNQLLY-NYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPW-EQAA 323 N LL ++PG LGGKTGYTDDA +TFVGAA R+GRR++ ++G + + +QA Sbjct 287 GTSNPLLRDDWPGMLGGKTGYTDDALKTFVGAAERNGRRIVITQMYGLNEADNMYAQQAE 346 Query 324 HLLDYGFNTPAGTQIGTL 341 + DYGF P GTL Sbjct 347 RMFDYGFAAPESVDAGTL 364 >gi|296120094|ref|ZP_06838648.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium ammoniagenes DSM 20306] gi|295967248|gb|EFG80519.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium ammoniagenes DSM 20306] Length=480 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 183/378 (49%), Positives = 231/378 (62%), Gaps = 25/378 (6%) Query 37 CPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEA 96 CP + P V +SE A G+ P P+ CG+ AP DV A A Sbjct 108 CPQALLPPKPVTTSEAVAPGQQS------PAPLPEVQESDCGV-QAPSGFRVNDDVRASA 160 Query 97 WLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVG 156 W+V+DLDSG ++A +DPHGR+RPAS++KVL+AM +I+ L L K V GT +DAA++G+ VG Sbjct 161 WIVSDLDSGEIVAMKDPHGRYRPASILKVLLAMVAIDELDLKKVVTGTDEDAAIDGSAVG 220 Query 157 VNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPS 216 + GG YTV QLL GLLM SGNDAA+ALA+QLGG L KIN LA LG R T A+ S Sbjct 221 IGPGGHYTVEQLLQGLLMASGNDAAHALAQQLGGDEETLTKINQLAQDLGARSTFAASYS 280 Query 217 GLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYP 276 GLD PGMSTSA D+ L Y A++NP FA +V T T +FPG+GD GYEL NDN L N P Sbjct 281 GLDAPGMSTSASDMALLYTEAFKNPTFARMVGTDTAEFPGYGDLEGYELGNDNGLFMNDP 340 Query 277 GALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIP-PWEQAAHLLDYGFNTPAG 335 +GGKTGYTDDA TFVGA +RDGRRLM V+L T P WEQA LLD ++ PAG Sbjct 341 DGIGGKTGYTDDANHTFVGALDRDGRRLMAVILDTTIDHGPRAWEQAQMLLDEAYDVPAG 400 Query 336 TQIGTLIEPDPSLMSTDRNPADRQRVDPQAA----ARISAADALPVRVG------VAVIG 385 + TL D L+ PA+ PQAA + + AA+ + G VA +G Sbjct 401 AGVSTL--DDIKLVGM---PAETSSAVPQAAQASGSDVVAAEESHTQSGWWPWLIVAGVG 455 Query 386 ALIVFGLIMVARAMNRRP 403 L++ I+ + + RRP Sbjct 456 VLVI--AIISSLLLLRRP 471 >gi|331699048|ref|YP_004335287.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudonocardia dioxanivorans CB1190] gi|326953737|gb|AEA27434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudonocardia dioxanivorans CB1190] Length=411 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 162/301 (54%), Positives = 205/301 (69%), Gaps = 6/301 (1%) Query 44 PPAVDSSEVPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVSAEAWLVADLD 103 PPAV+ P A PL +P PVGG ALG C + PG+ P + A W++ADLD Sbjct 38 PPAVEEGPDPVA-----PLPIPDPPVGGPALGTCDLALPPGAPALPAGIDAAGWVLADLD 92 Query 104 SGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTY 163 SG V+AARDPHGR RPAS +K+L + ++ L L+++V G D V+G++ G+ GG+Y Sbjct 93 SGVVLAARDPHGRQRPASTLKLLTTLVVLDRLPLDQTVVGDTSDVQVDGSRAGIGPGGSY 152 Query 164 TVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGM 223 TV QLL GLL++SGND A+ALAR LGG+P L+ + AA +G DTR ATPSGLDGPGM Sbjct 153 TVQQLLTGLLLNSGNDTAHALARTLGGVPRTLDLMQQRAAAMGALDTRPATPSGLDGPGM 212 Query 224 STSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKT 283 STSAYD+ LF R A +NP FA++ R FPG GD PG+ L ND+ LL +Y GALGGKT Sbjct 213 STSAYDLALFLRAALRNPTFAELTQLRLVAFPGFGDRPGFMLSNDDPLLSSYDGALGGKT 272 Query 284 GYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQ-IGTLI 342 G+TD A TFVGAA RDG RL+ L+ G + P+ QA+ LLDYGF PAGT +GTL+ Sbjct 273 GFTDAARHTFVGAAQRDGHRLVVALVRGEQHPVRMVAQASALLDYGFALPAGTPGVGTLV 332 Query 343 E 343 E Sbjct 333 E 333 >gi|262201714|ref|YP_003272922.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia bronchialis DSM 43247] gi|262085061|gb|ACY21029.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia bronchialis DSM 43247] Length=411 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 167/341 (49%), Positives = 219/341 (65%), Gaps = 14/341 (4%) Query 37 CPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTPV-GGNALGGCGIITAPGSAPAPGDVSAE 95 CP++V TPPAVD+SEV + G + PTP GG AL GCG+I P + P P +++ Sbjct 33 CPHRVHTPPAVDASEVVSPGSTTPTPLPVPTPPVGGAALSGCGVIADPSAGPIPQRLTSA 92 Query 96 AWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKV 155 AWL+AD+DSG VIAA+DPHGR+RPAS IKVL+A+ ++ L L+ V T +D + EG Sbjct 93 AWLIADVDSGHVIAAKDPHGRYRPASTIKVLLALVALRDLHLDDVVEPTVEDWSTEGDSC 152 Query 156 GVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATP 215 G+ GG YT LL GLLM SGND A AL+R LGG A L K+N LAA LG DTR A+P Sbjct 153 GMGPGGHYTTRDLLTGLLMVSGNDCANALSRSLGGTEATLAKMNELAASLGAHDTRAASP 212 Query 216 SGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGH-------GD--HPGYELE 266 SGLD GMSTS YD+ LF+R A ++ F +++ RTF FP + GD HP Y++ Sbjct 213 SGLDAAGMSTSPYDMALFFRAALRDNTFRELIGLRTFRFPDYPPRADVPGDKPHPAYDMY 272 Query 267 NDNQLLY-NYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHG-TRQPIPPWEQAAH 324 N LL +YPG +GGKTGYTDDA +TFVGA +RDGR +M V ++G + W+QA Sbjct 273 TSNHLLLEDYPGMIGGKTGYTDDALKTFVGAVHRDGRTIMVVQMYGLSVAGDMYWDQAKS 332 Query 325 LLDYGFNTPAGTQIGTLIEPDPSLMSTDR--NPADRQRVDP 363 + DYGF + +G+L++P PS +T +P QR P Sbjct 333 MFDYGFRSARTVSVGSLVDPTPSAAATTTPAHPDVTQRAGP 373 >gi|300782776|ref|YP_003763067.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei U32] gi|299792290|gb|ADJ42665.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei U32] gi|340524150|gb|AEK39355.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei S699] Length=414 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 157/298 (53%), Positives = 200/298 (68%), Gaps = 1/298 (0%) Query 34 PAACPYKVSTPPAVDSSEVPAAGEPPLPLVVPPTPV-GGNALGGCGIITAPGSAPAPGDV 92 P C + PP VD+SE PA G+P + P GGN + CG++T G+ P Sbjct 35 PGQCANHQAPPPPVDTSEKPAPGKPAPAPLAVPAVPVGGNRMAECGLVTPSGALNPPDGN 94 Query 93 SAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEG 152 +A +WLV DLD+GAV+AA+DPH R RPAS+IK L+A+ + L +++ T +DA E Sbjct 95 TAASWLVQDLDTGAVVAAKDPHARQRPASLIKTLLALVVVTQLDPQQTIVATKEDAEQEC 154 Query 153 TKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRV 212 T VG+ GG YTV+QLLHGLLMHSGND A+ A LGG +A+ K+N LAAK+G DTR Sbjct 155 TCVGLVAGGQYTVDQLLHGLLMHSGNDVAHVFATALGGPDSAVAKMNALAAKIGALDTRA 214 Query 213 ATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLL 272 ATPSGLDGPGMSTSAYD+ L + YA + P FA +VAT+ F+FP G P + NDN+LL Sbjct 215 ATPSGLDGPGMSTSAYDLSLIFNYAMKQPEFAKVVATKNFEFPPAGGKPAIPIFNDNKLL 274 Query 273 YNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGF 330 YPG LGGKTG+TDDA T+VGAA R G+RL V+L ++P +QAA LLDYGF Sbjct 275 GVYPGFLGGKTGFTDDARHTYVGAAQRKGKRLAVVMLRAEQKPTKVVDQAAKLLDYGF 332 >gi|258651532|ref|YP_003200688.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nakamurella multipartita DSM 44233] gi|258554757|gb|ACV77699.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nakamurella multipartita DSM 44233] Length=550 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 191/389 (50%), Positives = 234/389 (61%), Gaps = 25/389 (6%) Query 37 CPYKVSTPPAVDSSE-VPAAGEPPLPLVVPPTPVGGNALGGCGIITAPGSAPA-PGDVSA 94 C + PP VD+SE VP PP PL VP PVGG ALGGCG+I P ++PA P D+SA Sbjct 53 CAQRNQPPPPVDTSENVPDGQSPPEPLPVPAQPVGGAALGGCGLIV-PANSPALPSDISA 111 Query 95 EAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLT-LNKSVAGTADDAAVEGT 153 AWL+ADLD+G V+AA+DPHGR+RPAS +K+L A + LT L++ V GT D A +GT Sbjct 112 GAWLIADLDTGEVLAAKDPHGRYRPASTLKLLTAQVMLKNLTNLDQVVQGTQADTAQDGT 171 Query 154 KVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVA 213 +VG+ GGTYTV LL L+M SGNDAA ALAR GG + +N A LG DTR A Sbjct 172 RVGIEAGGTYTVRDLLSYLVMISGNDAANALARTNGGYDKTIADMNATAKALGALDTRAA 231 Query 214 TPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLY 273 TPSGLDGPG STSAYD+ LF + F +I+A P GY NDNQLL Sbjct 232 TPSGLDGPGQSTSAYDLALFAKADMAIAPFPEIIARPDIRVPAASGE-GYIAANDNQLLA 290 Query 274 NYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTP 333 YPGALGGKTG+TDDAG TFVG A +DGRRL+ ++HGT+QP W QAA LLD+GF P Sbjct 291 QYPGALGGKTGFTDDAGNTFVGMAAKDGRRLVVTMMHGTQQPRRQWMQAASLLDWGFALP 350 Query 334 AGTQ-IGTLI----------EPDPSLMSTDRNPADRQRVDPQAAARISAADALPVRVGVA 382 AGT +GTL+ P PSL + A + S+ A G+ Sbjct 351 AGTAPVGTLVTSLAEATAGPTPTPSLTPSASPSASASASPAAVSTGESSPTAGESSSGIP 410 Query 383 VIGALIVFGLIMVA---------RAMNRR 402 V L GL++VA RA+N+R Sbjct 411 VAWILAGVGLLVVAAGIVLLIRRRALNKR 439 >gi|305679771|ref|ZP_07402581.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium matruchotii ATCC 14266] gi|305660391|gb|EFM49888.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium matruchotii ATCC 14266] Length=489 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 163/339 (49%), Positives = 207/339 (62%), Gaps = 14/339 (4%) Query 37 CPYKVSTPPAVDSSE--VPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVS 93 CP P AV +SE VP A P PLP V N G CG+ A G D++ Sbjct 115 CPNAEHPPKAVTTSERPVPGAATPTPLPQVP-------NEFGTCGVKKAAGFVVP--DIT 165 Query 94 AEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGT 153 A AWLV DLDSGAV+ +DPHGR+RPAS+IKVL+AM IN L LNK V +A+ A EG+ Sbjct 166 ASAWLVWDLDSGAVLGTKDPHGRYRPASIIKVLLAMEVINNLDLNKVVTVSAESANQEGS 225 Query 154 KVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVA 213 VG+ GG YT+ LLHGLL+ SGNDAA+ALA++LGG AL ++N LA LG DT A Sbjct 226 AVGIGPGGKYTIRDLLHGLLLQSGNDAAHALAQELGGNEQALTRVNALAHNLGATDTYAA 285 Query 214 TPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLY 273 + SGLD PGMSTSA D+ +FY YAW+NP FA IV T + FPG+ D+PG+ + NDN LL Sbjct 286 SYSGLDAPGMSTSARDMAIFYHYAWKNPTFAQIVGTDEYKFPGYQDNPGWPIGNDNGLLM 345 Query 274 NYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTP 333 N P +GGKTG+T DA TFVGA RR+ V+L T PW+QA L+D N Sbjct 346 NDPDGIGGKTGFTSDANHTFVGAKKVGNRRIAAVILDTTVDKGRPWQQAQKLIDDNRNVT 405 Query 334 AGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAA 372 A +G L +P + ++P+ P+ + A+ Sbjct 406 A--NVGMLPQPGAAGAQASQHPSASATPSPRPIQEVHAS 442 >gi|225020583|ref|ZP_03709775.1| hypothetical protein CORMATOL_00590 [Corynebacterium matruchotii ATCC 33806] gi|224946529|gb|EEG27738.1| hypothetical protein CORMATOL_00590 [Corynebacterium matruchotii ATCC 33806] Length=498 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 163/339 (49%), Positives = 207/339 (62%), Gaps = 14/339 (4%) Query 37 CPYKVSTPPAVDSSE--VPAAGEP-PLPLVVPPTPVGGNALGGCGIITAPGSAPAPGDVS 93 CP P AV +SE VP A P PLP V N G CG+ A G D++ Sbjct 124 CPNAEHPPKAVTTSERPVPGAATPTPLPQVP-------NEFGTCGVKKAAGFVVP--DIT 174 Query 94 AEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGT 153 A AWLV DLDSGAV+ +DPHGR+RPAS+IKVL+AM IN L LNK V +A+ A EG+ Sbjct 175 ASAWLVWDLDSGAVLGTKDPHGRYRPASIIKVLLAMEVINNLDLNKVVTVSAESANQEGS 234 Query 154 KVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVA 213 VG+ GG YT+ LLHGLL+ SGNDAA+ALA++LGG AL ++N LA LG DT A Sbjct 235 AVGIGPGGKYTIRDLLHGLLLQSGNDAAHALAQELGGNEQALARVNALAHNLGATDTYAA 294 Query 214 TPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLY 273 + SGLD PGMSTSA D+ +FY YAW+NP FA IV T + FPG+ D+PG+ + NDN LL Sbjct 295 SYSGLDAPGMSTSARDMAIFYHYAWKNPTFAQIVGTDEYKFPGYQDNPGWPIGNDNGLLM 354 Query 274 NYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTP 333 N P +GGKTG+T DA TFVGA RR+ V+L T PW+QA L+D N Sbjct 355 NDPDGIGGKTGFTSDANHTFVGAKKVGNRRIAAVILDTTVDKGRPWQQAQKLIDDNRNVT 414 Query 334 AGTQIGTLIEPDPSLMSTDRNPADRQRVDPQAAARISAA 372 A +G L +P + ++P+ P+ + A+ Sbjct 415 A--NVGMLPQPGAAGAQASQHPSASATPSPRPIQEVHAS 451 >gi|334696255|gb|AEG81052.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium ulcerans 809] Length=404 Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 168/366 (46%), Positives = 220/366 (61%), Gaps = 25/366 (6%) Query 1 MAFLRSVSCLAAAVFAVGTGIGLPTAAGEPNAAPAA-----CPYKVSTPPAVDSSEVPAA 55 M ++ L A+ F + + P A +P +A C Y ++ PPA +SE Sbjct 1 MKVSSPIAALTASCFTLAF-VFTPAALADPTPRSSAPNTNNCEYALTPPPAETTSEQLKP 59 Query 56 GEPPLPLVVPPTP---VGGNALGGCGIITAPG-SAPAPGDVSAEAWLVADLDSGAVIAAR 111 G+ VPPTP V GGCG+ A G + PA +A AW+V DLDSG VIA + Sbjct 60 GQ------VPPTPRPTVINEYPGGCGVTKAKGFNEPAN---TASAWMVFDLDSGDVIATK 110 Query 112 DPHGRHRPASVIKVLVAMASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHG 171 DPHGR+RPASVIK L+A+ +++ L L V TA+DA EG+ VG G YT QLL+G Sbjct 111 DPHGRYRPASVIKALLALVALDELNLKAKVTITAEDANQEGSAVGYVDGVEYTNEQLLYG 170 Query 172 LLMHSGNDAAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIG 231 LL++SGNDAA+ALA++LGG LEK+N LA LG DT A+ SGLD PGMSTSA+D+ Sbjct 171 LLLNSGNDAAHALAQRLGGDEKTLEKVNALAQSLGTVDTYAASYSGLDAPGMSTSAHDLA 230 Query 232 LFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQ 291 L Y +AW+NP FA +VAT + PG+ P +++ NDN L N +GGKTGYTDDA Sbjct 231 LIYSHAWKNPTFAKMVATEHIELPGNAATPTFQVWNDNGLFLNDEHGIGGKTGYTDDAHH 290 Query 292 TFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFNTPAGTQIGTLIE------PD 345 TFVGA + DGRRL V+L T + PW+QA L+D + P G ++G L E P Sbjct 291 TFVGAKDIDGRRLAAVILDTTVEQGRPWQQAQKLIDAAYAVPKGEKVGNLKETSILSQPS 350 Query 346 PSLMST 351 PS + T Sbjct 351 PSELPT 356 Lambda K H 0.317 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 804061019016 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40