BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3346c

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610482|ref|NP_217863.1|  hypothetical protein Rv3346c [Mycob...   161    3e-38
gi|167966765|ref|ZP_02549042.1|  hypothetical protein MtubH3_0133...   155    1e-36
gi|306799328|ref|ZP_07437630.1|  hypothetical protein TMFG_02924 ...   151    4e-35
gi|294995885|ref|ZP_06801576.1|  hypothetical protein Mtub2_15628...   150    6e-35
gi|15610491|ref|NP_217872.1|  hypothetical protein Rv3355c [Mycob...   150    9e-35
gi|297733013|ref|ZP_06962131.1|  hypothetical protein MtubKR_1807...   144    3e-33
gi|240169075|ref|ZP_04747734.1|  hypothetical protein MkanA1_0716...   120    5e-26
gi|118617102|ref|YP_905434.1|  hypothetical protein MUL_1429 [Myc...   119    2e-25
gi|336459686|gb|EGO38620.1|  Protein of unknown function (DUF3017...   118    4e-25
gi|41409560|ref|NP_962396.1|  hypothetical protein MAP3462c [Myco...   118    4e-25
gi|296168836|ref|ZP_06850509.1|  conserved hypothetical protein [...   117    9e-25
gi|118464798|ref|YP_883458.1|  hypothetical protein MAV_4322 [Myc...   116    1e-24
gi|254820264|ref|ZP_05225265.1|  hypothetical protein MintA_10066...   115    2e-24
gi|15827283|ref|NP_301546.1|  hypothetical protein ML0675 [Mycoba...   109    2e-22
gi|342861568|ref|ZP_08718215.1|  hypothetical protein MCOL_21886 ...   108    3e-22
gi|333991833|ref|YP_004524447.1|  hypothetical protein JDM601_319...   105    2e-21
gi|73487016|gb|AAZ76629.1|  3355 protein [Mycobacterium wolinskyi]     104    4e-21
gi|73487003|gb|AAZ76619.1|  3355 protein [Mycobacterium goodii]        103    8e-21
gi|34733388|gb|AAQ81634.1|  3355 [Mycobacterium smegmatis]             100    7e-20
gi|120402558|ref|YP_952387.1|  hypothetical protein Mvan_1551 [My...  97.8    5e-19
gi|108798176|ref|YP_638373.1|  hypothetical protein Mmcs_1205 [My...  95.1    3e-18
gi|40807667|gb|AAR92233.1|  3355 [Mycobacterium fortuitum]            91.3    4e-17
gi|73487008|gb|AAZ76623.1|  3355 protein [Mycobacterium houstonense]  89.7    1e-16
gi|90658426|gb|ABD97112.1|  3355 [Mycobacterium senegalense]          89.0    2e-16
gi|145225454|ref|YP_001136132.1|  hypothetical protein Mflv_4878 ...  88.2    4e-16
gi|90658420|gb|ABD97107.1|  3355 [Mycobacterium peregrinum]           87.0    9e-16
gi|90901925|gb|ABE01849.1|  3355 protein [Mycobacterium porcinum]     86.7    1e-15
gi|169630770|ref|YP_001704419.1|  hypothetical protein MAB_3691c ...  77.8    5e-13
gi|111023198|ref|YP_706170.1|  hypothetical protein RHA1_ro06235 ...  63.2    1e-08
gi|73486999|gb|AAZ76616.1|  3355 protein [Mycobacterium boenickei]    62.0    3e-08
gi|296394296|ref|YP_003659180.1|  hypothetical protein Srot_1889 ...  62.0    3e-08
gi|73487012|gb|AAZ76626.1|  3355 protein [Mycobacterium neworlean...  60.8    6e-08
gi|226365703|ref|YP_002783486.1|  hypothetical protein ROP_62940 ...  60.5    8e-08
gi|333921644|ref|YP_004495225.1|  hypothetical protein AS9A_3989 ...  58.2    4e-07
gi|297625894|ref|YP_003687657.1|  hypothetical protein PFREUD_068...  55.1    3e-06
gi|302524133|ref|ZP_07276475.1|  predicted protein [Streptomyces ...  55.1    3e-06
gi|262201702|ref|YP_003272910.1|  hypothetical protein Gbro_1758 ...  53.9    8e-06
gi|296138671|ref|YP_003645914.1|  hypothetical protein Tpau_0942 ...  50.8    7e-05
gi|312140783|ref|YP_004008119.1|  integral membrane protein [Rhod...  50.1    1e-04
gi|343926624|ref|ZP_08766122.1|  hypothetical protein GOALK_067_0...  49.7    1e-04
gi|317508479|ref|ZP_07966147.1|  hypothetical protein HMPREF9336_...  49.7    2e-04
gi|326381930|ref|ZP_08203623.1|  hypothetical protein SCNU_03262 ...  49.3    2e-04
gi|50843202|ref|YP_056429.1|  hypothetical protein PPA1742 [Propi...  48.1    5e-04
gi|227832339|ref|YP_002834046.1|  hypothetical protein cauri_0511...  47.4    7e-04
gi|134103080|ref|YP_001108741.1|  hypothetical protein SACE_6650 ...  47.4    7e-04
gi|262183801|ref|ZP_06043222.1|  hypothetical protein CaurA7_0740...  47.4    8e-04
gi|314924226|gb|EFS88057.1|  conserved hypothetical protein [Prop...  47.4    8e-04
gi|331699061|ref|YP_004335300.1|  hypothetical protein Psed_5313 ...  47.0    0.001
gi|289424926|ref|ZP_06426705.1|  conserved hypothetical protein [...  47.0    0.001
gi|226305486|ref|YP_002765446.1|  hypothetical protein RER_19990 ...  46.6    0.001


>gi|15610482|ref|NP_217863.1| hypothetical protein Rv3346c [Mycobacterium tuberculosis H37Rv]
 gi|15842943|ref|NP_337980.1| hypothetical protein MT3450 [Mycobacterium tuberculosis CDC1551]
 gi|31794529|ref|NP_857022.1| hypothetical protein Mb3378c [Mycobacterium bovis AF2122/97]
 66 more sequence titles
 Length=85

 Score =  161 bits (407),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   MTVRAVLRRTVGAQWPILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGI  60
           MTVRAVLRRTVGAQWPILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGI
Sbjct  1   MTVRAVLRRTVGAQWPILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGI  60

Query  61  DFVTTVTVAAAMVYIASTIDPLGTG  85
           DFVTTVTVAAAMVYIASTIDPLGTG
Sbjct  61  DFVTTVTVAAAMVYIASTIDPLGTG  85


>gi|167966765|ref|ZP_02549042.1| hypothetical protein MtubH3_01338 [Mycobacterium tuberculosis 
H37Ra]
 gi|297733003|ref|ZP_06962121.1| hypothetical protein MtubKR_18025 [Mycobacterium tuberculosis 
KZN R506]
 gi|340628329|ref|YP_004746781.1| hypothetical protein MCAN_33721 [Mycobacterium canettii CIPT 
140010059]
 gi|340006519|emb|CCC45703.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=83

 Score =  155 bits (393),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 82/83 (99%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  3   VRAVLRRTVGAQWPILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDF  62
           +RAVLRRTVGAQWPILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDF
Sbjct  1   MRAVLRRTVGAQWPILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDF  60

Query  63  VTTVTVAAAMVYIASTIDPLGTG  85
           VTTVTVAAAMVYIASTIDPLGTG
Sbjct  61  VTTVTVAAAMVYIASTIDPLGTG  83


>gi|306799328|ref|ZP_07437630.1| hypothetical protein TMFG_02924 [Mycobacterium tuberculosis SUMu006]
 gi|308340464|gb|EFP29315.1| hypothetical protein TMFG_02924 [Mycobacterium tuberculosis SUMu006]
Length=97

 Score =  151 bits (381),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 84/97 (87%), Positives = 84/97 (87%), Gaps = 12/97 (12%)

Query  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MTVRAVLRRTVGAQWPIL            AG NFWRRGALLIGIGVGVAAVLRLVLSEE
Sbjct  1   MTVRAVLRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97


>gi|294995885|ref|ZP_06801576.1| hypothetical protein Mtub2_15628 [Mycobacterium tuberculosis 
210]
Length=79

 Score =  150 bits (379),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 78/79 (99%), Positives = 79/79 (100%), Gaps = 0/79 (0%)

Query  7   LRRTVGAQWPILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTV  66
           +RRTVGAQWPILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTV
Sbjct  1   MRRTVGAQWPILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTV  60

Query  67  TVAAAMVYIASTIDPLGTG  85
           TVAAAMVYIASTIDPLGTG
Sbjct  61  TVAAAMVYIASTIDPLGTG  79


>gi|15610491|ref|NP_217872.1| hypothetical protein Rv3355c [Mycobacterium tuberculosis H37Rv]
 gi|15842951|ref|NP_337988.1| hypothetical protein MT3463 [Mycobacterium tuberculosis CDC1551]
 gi|31794538|ref|NP_857031.1| hypothetical protein Mb3390c [Mycobacterium bovis AF2122/97]
 62 more sequence titles
 Length=97

 Score =  150 bits (378),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 83/97 (86%), Positives = 83/97 (86%), Gaps = 12/97 (12%)

Query  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MTVRAV RRTVGAQWPIL            AG NFWRRGALLIGIGVGVAAVLRLVLSEE
Sbjct  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97


>gi|297733013|ref|ZP_06962131.1| hypothetical protein MtubKR_18075 [Mycobacterium tuberculosis 
KZN R506]
 gi|308232432|ref|ZP_07664081.1| hypothetical protein TMAG_03303 [Mycobacterium tuberculosis SUMu001]
 gi|308370237|ref|ZP_07666895.1| hypothetical protein TMBG_03825 [Mycobacterium tuberculosis SUMu002]
 12 more sequence titles
 Length=95

 Score =  144 bits (364),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 80/95 (85%), Positives = 81/95 (86%), Gaps = 12/95 (12%)

Query  3   VRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEERA  50
           +RAV RRTVGAQWPIL            AG NFWRRGALLIGIGVGVAAVLRLVLSEERA
Sbjct  1   MRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERA  60

Query  51  GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct  61  GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  95


>gi|240169075|ref|ZP_04747734.1| hypothetical protein MkanA1_07164 [Mycobacterium kansasii ATCC 
12478]
Length=97

 Score =  120 bits (302),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 67/97 (70%), Positives = 69/97 (72%), Gaps = 12/97 (12%)

Query  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MT RA+L  T  AQWPIL             G NFWRRGALLIGIGVGVAA LRL LS+E
Sbjct  1   MTARAILAHTFRAQWPILLVGLIFTVAFVLVGANFWRRGALLIGIGVGVAAALRLALSDE  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
            AGLLVVRSKG DF T   V AAMVYIASTIDPLGTG
Sbjct  61  LAGLLVVRSKGTDFTTMAVVGAAMVYIASTIDPLGTG  97


>gi|118617102|ref|YP_905434.1| hypothetical protein MUL_1429 [Mycobacterium ulcerans Agy99]
 gi|183981199|ref|YP_001849490.1| hypothetical protein MMAR_1177 [Mycobacterium marinum M]
 gi|118569212|gb|ABL03963.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
 gi|183174525|gb|ACC39635.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=97

 Score =  119 bits (298),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 71/97 (74%), Gaps = 12/97 (12%)

Query  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MTVR    R + AQWPIL            AG NFWRRG+LLIGIGVGVAA LRLVLS++
Sbjct  1   MTVRDFAGRALRAQWPILLVGLIFAVAFALAGANFWRRGSLLIGIGVGVAAALRLVLSDD  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           RAGLL VRSK  DF+T  +V AAMVYIASTIDPLGTG
Sbjct  61  RAGLLTVRSKATDFITMTSVGAAMVYIASTIDPLGTG  97


>gi|336459686|gb|EGO38620.1| Protein of unknown function (DUF3017) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=93

 Score =  118 bits (295),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 67/97 (70%), Positives = 72/97 (75%), Gaps = 16/97 (16%)

Query  1   MTVRAVLRRTVGAQWPILA------------GVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MT R ++R    AQWPIL             G NFWRRG+LL+GIGVGVAA+LRLVLSEE
Sbjct  1   MTARTLMR----AQWPILVVGLIFAVALALVGANFWRRGSLLLGIGVGVAALLRLVLSEE  56

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           RAGLLVVR KGIDFVTT  V AAMVYIA TIDPLGTG
Sbjct  57  RAGLLVVRGKGIDFVTTAMVGAAMVYIAWTIDPLGTG  93


>gi|41409560|ref|NP_962396.1| hypothetical protein MAP3462c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|254776750|ref|ZP_05218266.1| hypothetical protein MaviaA2_19076 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41398391|gb|AAS06012.1| hypothetical protein MAP_3462c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=93

 Score =  118 bits (295),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 67/97 (70%), Positives = 72/97 (75%), Gaps = 16/97 (16%)

Query  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MT R ++R    AQWPIL             G NFWRRG+LL+GIGVGVAA+LRLVLSEE
Sbjct  1   MTARTLMR----AQWPILLVGLIFAVALALVGANFWRRGSLLLGIGVGVAALLRLVLSEE  56

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           RAGLLVVR KGIDFVTT  V AAMVYIA TIDPLGTG
Sbjct  57  RAGLLVVRGKGIDFVTTAMVGAAMVYIAWTIDPLGTG  93


>gi|296168836|ref|ZP_06850509.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896495|gb|EFG76144.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=93

 Score =  117 bits (292),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 66/97 (69%), Positives = 71/97 (74%), Gaps = 16/97 (16%)

Query  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MT R+V R    AQWPIL             G NFWRRG+LLIGIGVG+AA LRLVLS+E
Sbjct  1   MTARSVAR----AQWPILLVGLTFATALALVGANFWRRGSLLIGIGVGLAAALRLVLSDE  56

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           R+GLL VRSKGIDFVTT  VA AMVYIA TIDPLGTG
Sbjct  57  RSGLLAVRSKGIDFVTTAAVATAMVYIAWTIDPLGTG  93


>gi|118464798|ref|YP_883458.1| hypothetical protein MAV_4322 [Mycobacterium avium 104]
 gi|118166085|gb|ABK66982.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=93

 Score =  116 bits (291),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 66/97 (69%), Positives = 72/97 (75%), Gaps = 16/97 (16%)

Query  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MT R ++R    AQWPIL             G NFWRRG+LL+GIGVGVAA+LRLVLSEE
Sbjct  1   MTARTLMR----AQWPILLVGLIFAVALALVGANFWRRGSLLLGIGVGVAALLRLVLSEE  56

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           RAG+LVVR KGIDFVTT  V AAMVYIA TIDPLGTG
Sbjct  57  RAGVLVVRGKGIDFVTTAMVGAAMVYIAWTIDPLGTG  93


>gi|254820264|ref|ZP_05225265.1| hypothetical protein MintA_10066 [Mycobacterium intracellulare 
ATCC 13950]
Length=93

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 67/96 (70%), Positives = 70/96 (73%), Gaps = 16/96 (16%)

Query  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MT R VLR    AQWPIL             G NFWRRG+LLIGIGVGVAA+LRLVLSEE
Sbjct  1   MTARTVLR----AQWPILLVGLIFAAALVLVGANFWRRGSLLIGIGVGVAALLRLVLSEE  56

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           RAGLLVVR KGIDF+TT  V AAM YIA TIDPLGT
Sbjct  57  RAGLLVVRGKGIDFITTAAVGAAMDYIAWTIDPLGT  92


>gi|15827283|ref|NP_301546.1| hypothetical protein ML0675 [Mycobacterium leprae TN]
 gi|221229761|ref|YP_002503177.1| hypothetical protein MLBr_00675 [Mycobacterium leprae Br4923]
 gi|2326686|emb|CAB10997.1| hypothetical protein MLCB1779.16c [Mycobacterium leprae]
 gi|13092832|emb|CAC30184.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932868|emb|CAR70769.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=91

 Score =  109 bits (272),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 64/95 (68%), Positives = 68/95 (72%), Gaps = 16/95 (16%)

Query  3   VRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEERA  50
           +RA LR    +QWPIL             G NFWRRGALLIGIGVGVA VLRLVLS+ERA
Sbjct  1   MRAALR----SQWPILLVGMIFAGAFVLVGANFWRRGALLIGIGVGVATVLRLVLSDERA  56

Query  51  GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           GLL+VR K ID VTT  V  AMVYIASTIDPLGTG
Sbjct  57  GLLMVRGKVIDLVTTALVGMAMVYIASTIDPLGTG  91


>gi|342861568|ref|ZP_08718215.1| hypothetical protein MCOL_21886 [Mycobacterium colombiense CECT 
3035]
 gi|342131057|gb|EGT84346.1| hypothetical protein MCOL_21886 [Mycobacterium colombiense CECT 
3035]
Length=78

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 56/67 (84%), Positives = 60/67 (90%), Gaps = 0/67 (0%)

Query  18  LAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIAS  77
           L G NFWRRG+LLIGIGVGVAA+LRLVLSE+RAGLLVVR KGIDF+TT TV AAM YIA 
Sbjct  11  LVGANFWRRGSLLIGIGVGVAALLRLVLSEDRAGLLVVRGKGIDFMTTATVGAAMFYIAW  70

Query  78  TIDPLGT  84
           TIDPLGT
Sbjct  71  TIDPLGT  77


>gi|333991833|ref|YP_004524447.1| hypothetical protein JDM601_3192 [Mycobacterium sp. JDM601]
 gi|333487800|gb|AEF37192.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=96

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 62/93 (67%), Positives = 68/93 (74%), Gaps = 12/93 (12%)

Query  4   RAVLRRTVGAQWPI------------LAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAG  51
           RA +RR V AQWPI            LAG NFWRRGALLIGIG  VAA LRLVLSEERAG
Sbjct  3   RADVRRLVAAQWPIMLVGLIFVAAFVLAGANFWRRGALLIGIGTAVAAALRLVLSEERAG  62

Query  52  LLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           LLV+R +G+DF T  T A AMVYIA+T+DPLGT
Sbjct  63  LLVLRDRGLDFATMTTAATAMVYIAATVDPLGT  95


>gi|73487016|gb|AAZ76629.1| 3355 protein [Mycobacterium wolinskyi]
Length=97

 Score =  104 bits (260),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 59/96 (62%), Positives = 70/96 (73%), Gaps = 12/96 (12%)

Query  1   MTVRAVLRRTVGAQWPILA-GVNF-----------WRRGALLIGIGVGVAAVLRLVLSEE  48
           MT++   R+    QWPIL  G+ F           WRRGAL+IGIGVGVAA LRL L+++
Sbjct  1   MTLKEFARKVFAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGVAAALRLALTDD  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           RAGLLVVR KGIDFVTT TV+AA++YIA TIDPLGT
Sbjct  61  RAGLLVVRGKGIDFVTTATVSAAVLYIAWTIDPLGT  96


>gi|73487003|gb|AAZ76619.1| 3355 protein [Mycobacterium goodii]
Length=97

 Score =  103 bits (257),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 59/96 (62%), Positives = 69/96 (72%), Gaps = 12/96 (12%)

Query  1   MTVRAVLRRTVGAQWPILA-GVNF-----------WRRGALLIGIGVGVAAVLRLVLSEE  48
           MT R  +R+    QWPIL  G+ F           WRRGAL+IGIGVGVAA LRL L++E
Sbjct  1   MTPREFVRKVFAGQWPILVVGLIFVAAFALVVAGYWRRGALVIGIGVGVAAALRLALTDE  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRAIDFATTATVSAAVLYIAWTIDPLGT  96


>gi|34733388|gb|AAQ81634.1| 3355 [Mycobacterium smegmatis]
Length=97

 Score =  100 bits (249),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 55/96 (58%), Positives = 66/96 (69%), Gaps = 12/96 (12%)

Query  1   MTVRAVLRRTVGAQWPILAG------------VNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MT +   R+    QWPIL                +WRRGAL+IGIGVGVAA LRL L+++
Sbjct  1   MTPKEFARKVFAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGVAAALRLALTDD  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRAIDFATTATVSAAVLYIAWTIDPLGT  96


>gi|120402558|ref|YP_952387.1| hypothetical protein Mvan_1551 [Mycobacterium vanbaalenii PYR-1]
 gi|119955376|gb|ABM12381.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=97

 Score = 97.8 bits (242),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 52/97 (54%), Positives = 65/97 (68%), Gaps = 12/97 (12%)

Query  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MTV+   R+    QWPIL                +WRRGAL++ IGV VA+ LRL L E+
Sbjct  1   MTVKQFARKVFAGQWPILLVGLFLVAAFILVAAGYWRRGALVMAIGVAVASGLRLALPED  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           RAGLLVVR++ +DF+TT TV+AAM+YIA TIDPLGT 
Sbjct  61  RAGLLVVRTRTVDFLTTATVSAAMLYIAWTIDPLGTS  97


>gi|108798176|ref|YP_638373.1| hypothetical protein Mmcs_1205 [Mycobacterium sp. MCS]
 gi|119867272|ref|YP_937224.1| hypothetical protein Mkms_1222 [Mycobacterium sp. KMS]
 gi|126433834|ref|YP_001069525.1| hypothetical protein Mjls_1232 [Mycobacterium sp. JLS]
 gi|108768595|gb|ABG07317.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119693361|gb|ABL90434.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126233634|gb|ABN97034.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=97

 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 54/96 (57%), Positives = 65/96 (68%), Gaps = 12/96 (12%)

Query  1   MTVRAVLRRTVGAQWPILA-GVNF-----------WRRGALLIGIGVGVAAVLRLVLSEE  48
           MTV+   R+    QWPIL  G+ F           WRRGAL++ IGVGVAA LR+ L++E
Sbjct  1   MTVKDFARKVFAGQWPILVVGLIFVAAFALVIAGYWRRGALVLAIGVGVAAGLRISLTDE  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           RAGLL VRS+ IDF TT TV+A M Y+A TIDPLGT
Sbjct  61  RAGLLAVRSRAIDFATTSTVSAIMFYVAWTIDPLGT  96


>gi|40807667|gb|AAR92233.1| 3355 [Mycobacterium fortuitum]
Length=97

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 58/96 (61%), Positives = 69/96 (72%), Gaps = 12/96 (12%)

Query  1   MTVRAVLRRTVGAQWPILA-GVNF-----------WRRGALLIGIGVGVAAVLRLVLSEE  48
           MTV+  +R+    QWPIL  G+ F           WRRGAL+IGIGVG AA LRL L++E
Sbjct  1   MTVQEFVRKVFAGQWPILVVGLIFIAAFVLVVAGYWRRGALIIGIGVGAAAALRLALTDE  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRTIDFATTATVSAAVLYIAWTIDPLGT  96


>gi|73487008|gb|AAZ76623.1| 3355 protein [Mycobacterium houstonense]
Length=97

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 55/96 (58%), Positives = 67/96 (70%), Gaps = 12/96 (12%)

Query  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MT +  +R+ V  QWPIL                +WRRGAL+IGIGVG AA LRL L+++
Sbjct  1   MTAKEFVRKVVAGQWPILLVGLIFVAAFALVVAGYWRRGALVIGIGVGAAAALRLALTDD  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRPIDFTTTATVSAAVLYIAWTIDPLGT  96


>gi|90658426|gb|ABD97112.1| 3355 [Mycobacterium senegalense]
Length=97

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 56/96 (59%), Positives = 69/96 (72%), Gaps = 12/96 (12%)

Query  1   MTVRAVLRRTVGAQWPILA-GVNF-----------WRRGALLIGIGVGVAAVLRLVLSEE  48
           MT +  +R+ V  QWPIL  G+ F           WRRGAL+IGIGVG AA LRL L+++
Sbjct  1   MTAKXFVRKVVAGQWPILVVGLIFIAAFVLVVAGYWRRGALIIGIGVGAAAALRLALTDD  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           RAGLLVVRS+ IDF TT TV+AA++YIA +IDPLGT
Sbjct  61  RAGLLVVRSRTIDFATTATVSAAVLYIAWSIDPLGT  96


>gi|145225454|ref|YP_001136132.1| hypothetical protein Mflv_4878 [Mycobacterium gilvum PYR-GCK]
 gi|315445807|ref|YP_004078686.1| hypothetical protein Mspyr1_42940 [Mycobacterium sp. Spyr1]
 gi|145217940|gb|ABP47344.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315264110|gb|ADU00852.1| hypothetical protein Mspyr1_42940 [Mycobacterium sp. Spyr1]
Length=95

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 49/92 (54%), Positives = 60/92 (66%), Gaps = 12/92 (13%)

Query  5   AVLRRTVGAQWPILAGV------------NFWRRGALLIGIGVGVAAVLRLVLSEERAGL  52
           A  R+ +G QWPIL                +WRRGAL++ IGV VAA LR  L E+R GL
Sbjct  3   AFARKILGGQWPILVVALFLVAAFALVAAGYWRRGALVMAIGVAVAAALRTALPEDRVGL  62

Query  53  LVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           L VRS+ +D VTT +V+AAM+YIA TIDPLGT
Sbjct  63  LAVRSRTVDIVTTASVSAAMLYIAWTIDPLGT  94


>gi|90658420|gb|ABD97107.1| 3355 [Mycobacterium peregrinum]
Length=97

 Score = 87.0 bits (214),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 56/98 (58%), Positives = 67/98 (69%), Gaps = 16/98 (16%)

Query  1   MTVRAVLRRTVGAQWPIL--------------AGVNFWRRGALLIGIGVGVAAVLRLVLS  46
           MTV   +R+    QWPIL              AG  +WRRGAL+IGIGVG AA LRL L+
Sbjct  1   MTVNEFVRKVFAGQWPILVVGLIFIAAFALVVAG--YWRRGALVIGIGVGAAAALRLALT  58

Query  47  EERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           ++RAGLLVVRS+ IDF TT TV+A ++YIA TIDPLGT
Sbjct  59  DDRAGLLVVRSRTIDFTTTATVSAIVLYIAWTIDPLGT  96


>gi|90901925|gb|ABE01849.1| 3355 protein [Mycobacterium porcinum]
Length=97

 Score = 86.7 bits (213),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 53/96 (56%), Positives = 66/96 (69%), Gaps = 12/96 (12%)

Query  1   MTVRAVLRRTVGAQWPILAG------------VNFWRRGALLIGIGVGVAAVLRLVLSEE  48
           MT +  +++ V  QWPIL                +WRRGAL+IGIGVG AA LRL L+++
Sbjct  1   MTAKEFVQKVVAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGAAAALRLALTDD  60

Query  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  84
           RAGLLVVRS+ IDF TT TV+A ++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRTIDFATTATVSAVVLYIAWTIDPLGT  96


>gi|169630770|ref|YP_001704419.1| hypothetical protein MAB_3691c [Mycobacterium abscessus ATCC 
19977]
 gi|169242737|emb|CAM63765.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=109

 Score = 77.8 bits (190),  Expect = 5e-13, Method: Compositional matrix adjust.
 Identities = 48/91 (53%), Positives = 58/91 (64%), Gaps = 12/91 (13%)

Query  7    LRRTVGAQWPILAG------------VNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV  54
            ++R    QWPIL               + WRRGAL++GI VG+AA LRLVL+++ AGLL 
Sbjct  19   IQRFAREQWPILVVSAVFLAALGLVIADRWRRGALVVGIAVGIAAALRLVLTDDTAGLLA  78

Query  55   VRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
            VRSK  D      VAAAMVY+A TIDPLGTG
Sbjct  79   VRSKTFDVGALGAVAAAMVYLALTIDPLGTG  109


>gi|111023198|ref|YP_706170.1| hypothetical protein RHA1_ro06235 [Rhodococcus jostii RHA1]
 gi|110822728|gb|ABG98012.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=94

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 41/61 (68%), Gaps = 0/61 (0%)

Query  24  WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLG  83
           WRRGA + G+   +AAV RL++  ER GLL VRSK  D    V V  A+V++A +IDPLG
Sbjct  33  WRRGAFVFGVATLLAAVFRLMMPSERVGLLAVRSKPFDVGALVAVGGAIVWLAVSIDPLG  92

Query  84  T  84
           T
Sbjct  93  T  93


>gi|73486999|gb|AAZ76616.1| 3355 protein [Mycobacterium boenickei]
Length=72

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 30/45 (67%), Positives = 38/45 (85%), Gaps = 0/45 (0%)

Query  41  LRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85
           +RL L+++RAGLLVVRS+ IDF TT TV+A ++YIA TIDPLGT 
Sbjct  28  VRLALTDDRAGLLVVRSRTIDFATTATVSAVVLYIAWTIDPLGTS  72


>gi|296394296|ref|YP_003659180.1| hypothetical protein Srot_1889 [Segniliparus rotundus DSM 44985]
 gi|296181443|gb|ADG98349.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=112

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 34/65 (53%), Positives = 44/65 (68%), Gaps = 0/65 (0%)

Query  21   VNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTID  80
            ++ WRRG  +IG  V VAAVLR VL   RAGLL VRS+  D      V AA+++++ TI+
Sbjct  46   IDRWRRGGAVIGFAVIVAAVLRAVLPTNRAGLLAVRSRVFDVAVLALVGAAILWVSWTIN  105

Query  81   PLGTG  85
            PLGTG
Sbjct  106  PLGTG  110


>gi|73487012|gb|AAZ76626.1| 3355 protein [Mycobacterium neworleansense]
Length=66

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 40/62 (65%), Positives = 48/62 (78%), Gaps = 1/62 (1%)

Query  23  FWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPL  82
           +WRRGA     G   AA LRL L+++RAGLLVVRS+ IDF TT TV+AA++YIA TIDPL
Sbjct  5   YWRRGAXSSDRGG-AAAALRLALTDDRAGLLVVRSRTIDFATTATVSAAVLYIAWTIDPL  63

Query  83  GT  84
           GT
Sbjct  64  GT  65


>gi|226365703|ref|YP_002783486.1| hypothetical protein ROP_62940 [Rhodococcus opacus B4]
 gi|226244193|dbj|BAH54541.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=94

 Score = 60.5 bits (145),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 30/61 (50%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  24  WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLG  83
           WRRGA + G+   +AA  RL +  ER GLL VRS+  D    V V  A+V++A +IDPLG
Sbjct  33  WRRGAFVFGVATLLAAAFRLTMPSERVGLLAVRSRAFDVGALVAVGGAIVWLAVSIDPLG  92

Query  84  T  84
           T
Sbjct  93  T  93


>gi|333921644|ref|YP_004495225.1| hypothetical protein AS9A_3989 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333483865|gb|AEF42425.1| hypothetical protein AS9A_3989 [Amycolicicoccus subflavus DQS3-9A1]
Length=100

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 30/62 (49%), Positives = 41/62 (67%), Gaps = 0/62 (0%)

Query  24  WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLG  83
           WRRGA ++GI   +AA  RL+L E +AGLLVVRS+  D      +   +V++  +IDPLG
Sbjct  39  WRRGAFVVGIATLLAAWFRLILPEVQAGLLVVRSRPFDVGALTLMGGTIVWLTLSIDPLG  98

Query  84  TG  85
           TG
Sbjct  99  TG  100


>gi|297625894|ref|YP_003687657.1| hypothetical protein PFREUD_06850 [Propionibacterium freudenreichii 
subsp. shermanii CIRM-BIA1]
 gi|296921659|emb|CBL56216.1| Hypothetical protein PFREUD_06850 [Propionibacterium freudenreichii 
subsp. shermanii CIRM-BIA1]
Length=107

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 33/82 (41%), Positives = 44/82 (54%), Gaps = 12/82 (14%)

Query  13   AQWPILAGVNF------------WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGI  60
            AQWP+L  + F            WRRGA+L+G G+G+A VLRL L    AGLLVVR +  
Sbjct  24   AQWPLLLCLAFFVAGMAVTAAAHWRRGAVLMGAGLGLAGVLRLFLPPRLAGLLVVRRRWF  83

Query  61   DFVTTVTVAAAMVYIASTIDPL  82
            D +  +     M  +A  + PL
Sbjct  84   DVLVGIVGGTTMCVLAILVPPL  105


>gi|302524133|ref|ZP_07276475.1| predicted protein [Streptomyces sp. AA4]
 gi|302433028|gb|EFL04844.1| predicted protein [Streptomyces sp. AA4]
Length=103

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 29/56 (52%), Positives = 39/56 (70%), Gaps = 0/56 (0%)

Query  24  WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTI  79
           WR GA L+G+ + VA  LR VL EERAGLL +R K +D VT   + AA+++I+ TI
Sbjct  39  WREGAALVGVALFVAGALRAVLPEERAGLLAIRGKIVDIVTYGALCAAVLFISLTI  94


>gi|262201702|ref|YP_003272910.1| hypothetical protein Gbro_1758 [Gordonia bronchialis DSM 43247]
 gi|262085049|gb|ACY21017.1| hypothetical protein Gbro_1758 [Gordonia bronchialis DSM 43247]
Length=107

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 28/61 (46%), Positives = 38/61 (63%), Gaps = 0/61 (0%)

Query  24   WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLG  83
            WRRG+ + G  + V AVLR  +   RAGLL VR K  D V   +V   M+++A++ID LG
Sbjct  46   WRRGSFVFGTALLVGAVLRACIPSSRAGLLQVRGKFFDVVAMASVGVLMLWLATSIDSLG  105

Query  84   T  84
            T
Sbjct  106  T  106


>gi|296138671|ref|YP_003645914.1| hypothetical protein Tpau_0942 [Tsukamurella paurometabola DSM 
20162]
 gi|296026805|gb|ADG77575.1| hypothetical protein Tpau_0942 [Tsukamurella paurometabola DSM 
20162]
Length=104

 Score = 50.8 bits (120),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 30/68 (45%), Positives = 40/68 (59%), Gaps = 0/68 (0%)

Query  17   ILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIA  76
            +L G+ +WRRG  + G G G+AAVLR  L + R GLL VRS+  D       A A++ + 
Sbjct  36   VLVGLEYWRRGLAVFGAGTGLAAVLRATLPDRRQGLLRVRSRWFDTTVLAVAAVAILVVT  95

Query  77   STIDPLGT  84
             TI  LGT
Sbjct  96   WTISTLGT  103


>gi|312140783|ref|YP_004008119.1| integral membrane protein [Rhodococcus equi 103S]
 gi|325675577|ref|ZP_08155261.1| hypothetical protein HMPREF0724_13043 [Rhodococcus equi ATCC 
33707]
 gi|311890122|emb|CBH49440.1| putative integral membrane protein [Rhodococcus equi 103S]
 gi|325553548|gb|EGD23226.1| hypothetical protein HMPREF0724_13043 [Rhodococcus equi ATCC 
33707]
Length=91

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 31/63 (50%), Positives = 43/63 (69%), Gaps = 0/63 (0%)

Query  22  NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDP  81
           + WRRGAL++G  + +AA+LR  LS +R GLL VR KG D      V A ++ +A++IDP
Sbjct  28  DRWRRGALVLGGAMVLAALLRAALSPDRVGLLAVRGKGFDVAAMAVVGATIIALAASIDP  87

Query  82  LGT  84
           LGT
Sbjct  88  LGT  90


>gi|343926624|ref|ZP_08766122.1| hypothetical protein GOALK_067_00070 [Gordonia alkanivorans NBRC 
16433]
 gi|343763376|dbj|GAA13048.1| hypothetical protein GOALK_067_00070 [Gordonia alkanivorans NBRC 
16433]
Length=134

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  24   WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLG  83
            WRRG+ + G  + V A+LR  +   +AGLL VR K  D     TV   M+++A++ID LG
Sbjct  73   WRRGSFVFGAALLVGALLRAFIPSSQAGLLQVRGKLFDVSVMATVGGVMLWLATSIDSLG  132

Query  84   T  84
            T
Sbjct  133  T  133


>gi|317508479|ref|ZP_07966147.1| hypothetical protein HMPREF9336_02519 [Segniliparus rugosus ATCC 
BAA-974]
 gi|316253227|gb|EFV12629.1| hypothetical protein HMPREF9336_02519 [Segniliparus rugosus ATCC 
BAA-974]
Length=115

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 27/64 (43%), Positives = 38/64 (60%), Gaps = 0/64 (0%)

Query  21   VNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTID  80
            ++ WRRG  +IG  V   AV R  L   R GLL VR +  D +    V AA+++++ TI+
Sbjct  49   LDRWRRGGAVIGAAVLAGAVFRAALPTNRVGLLAVRGRLFDVLALALVGAAILWVSWTIN  108

Query  81   PLGT  84
            PLGT
Sbjct  109  PLGT  112


>gi|326381930|ref|ZP_08203623.1| hypothetical protein SCNU_03262 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326199356|gb|EGD56537.1| hypothetical protein SCNU_03262 [Gordonia neofelifaecis NRRL 
B-59395]
Length=118

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 24/64 (38%), Positives = 38/64 (60%), Gaps = 0/64 (0%)

Query  21   VNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTID  80
            ++ WRRGA + G  + + AV R  L   R GLL VRS+  D      +  +++++A++ID
Sbjct  54   IDRWRRGAFVFGAAMLLGAVFRAFLPANRTGLLQVRSRAFDISAMAVLGGSVLWLATSID  113

Query  81   PLGT  84
             LGT
Sbjct  114  SLGT  117


>gi|50843202|ref|YP_056429.1| hypothetical protein PPA1742 [Propionibacterium acnes KPA171202]
 gi|50840804|gb|AAT83471.1| hypothetical protein PPA1742 [Propionibacterium acnes KPA171202]
 gi|335278158|gb|AEH30063.1| hypothetical protein TIB1ST10_08955 [Propionibacterium acnes 
6609]
Length=112

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 26/59 (45%), Positives = 38/59 (65%), Gaps = 0/59 (0%)

Query  17   ILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYI  75
            I+ G   WRRGA++    V +A +LR+VL E+ AGLL VR++ ID V  + + A MV +
Sbjct  50   IVMGTGHWRRGAMVFAASVLMAGILRVVLPEQSAGLLAVRTRWIDSVLLLGLGAVMVVV  108


>gi|227832339|ref|YP_002834046.1| hypothetical protein cauri_0511 [Corynebacterium aurimucosum 
ATCC 700975]
 gi|227453355|gb|ACP32108.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length=140

 Score = 47.4 bits (111),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 26/63 (42%), Positives = 36/63 (58%), Gaps = 0/63 (0%)

Query  22   NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDP  81
              WRR  LL+G  +   AV+RL     R G+L VRS+  D   T  + AAM ++A +ID 
Sbjct  78   EHWRRATLLLGGALMWLAVVRLTCDSSRVGVLAVRSRRFDACFTGILGAAMAFLAFSIDA  137

Query  82   LGT  84
            LG+
Sbjct  138  LGS  140


>gi|134103080|ref|YP_001108741.1| hypothetical protein SACE_6650 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291008966|ref|ZP_06566939.1| hypothetical protein SeryN2_30963 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133915703|emb|CAM05816.1| hypothetical protein SACE_6650 [Saccharopolyspora erythraea NRRL 
2338]
Length=96

 Score = 47.4 bits (111),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 21/41 (52%), Positives = 33/41 (81%), Gaps = 0/41 (0%)

Query  21  VNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGID  61
           +  WR+G++LIG+ + +AAVLR +L+ E+AGLL +RS+ ID
Sbjct  33  MQHWRQGSVLIGVALVLAAVLRALLTNEQAGLLAIRSRAID  73


>gi|262183801|ref|ZP_06043222.1| hypothetical protein CaurA7_07408 [Corynebacterium aurimucosum 
ATCC 700975]
Length=104

 Score = 47.4 bits (111),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 26/63 (42%), Positives = 36/63 (58%), Gaps = 0/63 (0%)

Query  22   NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDP  81
              WRR  LL+G  +   AV+RL     R G+L VRS+  D   T  + AAM ++A +ID 
Sbjct  42   EHWRRATLLLGGALMWLAVVRLTCDSSRVGVLAVRSRRFDACFTGILGAAMAFLAFSIDA  101

Query  82   LGT  84
            LG+
Sbjct  102  LGS  104


>gi|314924226|gb|EFS88057.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
 gi|314964901|gb|EFT09000.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
 gi|314982184|gb|EFT26277.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
 gi|315090415|gb|EFT62391.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
 gi|315093801|gb|EFT65777.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
 gi|327325619|gb|EGE67418.1| hypothetical protein HMPREF9341_02432 [Propionibacterium acnes 
HL103PA1]
Length=112

 Score = 47.4 bits (111),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 26/59 (45%), Positives = 38/59 (65%), Gaps = 0/59 (0%)

Query  17   ILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYI  75
            I+ G   WRRGA++    V +A +LR+VL E+ AGLL VR++ ID V  + + A MV +
Sbjct  50   IVMGTGHWRRGAMVFAASVVMAGILRVVLPEQCAGLLAVRARWIDSVLLLGLGAVMVVV  108


>gi|331699061|ref|YP_004335300.1| hypothetical protein Psed_5313 [Pseudonocardia dioxanivorans 
CB1190]
 gi|326953750|gb|AEA27447.1| hypothetical protein Psed_5313 [Pseudonocardia dioxanivorans 
CB1190]
Length=98

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 36/57 (64%), Gaps = 0/57 (0%)

Query  23  FWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTI  79
            WR GA+L+G  + VAAVLR+ L +ERAGLL +RSK +D +        M  +A TI
Sbjct  34  HWREGAVLLGGALIVAAVLRVALPQERAGLLAIRSKVVDVLLYSGFGLVMTVLAVTI  90


>gi|289424926|ref|ZP_06426705.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289427746|ref|ZP_06429458.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|335053865|ref|ZP_08546691.1| hypothetical protein HMPREF9948_2477 [Propionibacterium sp. 434-HC2]
 7 more sequence titles
 Length=71

 Score = 47.0 bits (110),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 27/62 (44%), Positives = 39/62 (63%), Gaps = 0/62 (0%)

Query  17  ILAGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIA  76
           I+ G   WRRGA++    V +A +LR+VL E+ AGLL VR++ ID V  + + A MV + 
Sbjct  9   IVMGTGHWRRGAMVFAASVLMAGILRVVLPEQSAGLLAVRTRWIDSVLLLGLGAVMVVVI  68

Query  77  ST  78
            T
Sbjct  69  LT  70


>gi|226305486|ref|YP_002765446.1| hypothetical protein RER_19990 [Rhodococcus erythropolis PR4]
 gi|229489383|ref|ZP_04383246.1| hypothetical protein RHOER0001_4346 [Rhodococcus erythropolis 
SK121]
 gi|226184603|dbj|BAH32707.1| conserved hypothetical membrane protein [Rhodococcus erythropolis 
PR4]
 gi|229323480|gb|EEN89238.1| hypothetical protein RHOER0001_4346 [Rhodococcus erythropolis 
SK121]
Length=94

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 26/61 (43%), Positives = 34/61 (56%), Gaps = 0/61 (0%)

Query  24  WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLG  83
           WRRGAL+ G+ V + A  R  + E R GLL VR +  D      +   +  +A TIDPLG
Sbjct  33  WRRGALVFGVAVIIGAAARWFVPENRVGLLAVRGRVFDTAAMGVMGVLIATLALTIDPLG  92

Query  84  T  84
           T
Sbjct  93  T  93



Lambda     K      H
   0.327    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131466506940


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40