BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3348

Length=163
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610484|ref|NP_217865.1|  transposase [Mycobacterium tubercul...   323    8e-87
gi|340628815|ref|YP_004747267.1|  putative transposase [Mycobacte...   319    7e-86
gi|307081515|ref|ZP_07490685.1|  hypothetical protein TMKG_03694 ...   250    4e-65
gi|306970091|ref|ZP_07482752.1|  transposase [Mycobacterium tuber...   243    5e-63
gi|306805695|ref|ZP_07442363.1|  transposase [Mycobacterium tuber...   236    7e-61
gi|306786893|ref|ZP_07425215.1|  hypothetical protein TMDG_01803 ...   235    1e-60
gi|306974325|ref|ZP_07486986.1|  transposase [Mycobacterium tuber...   234    4e-60
gi|306795128|ref|ZP_07433430.1|  hypothetical protein TMEG_03734 ...   231    3e-59
gi|306786231|ref|ZP_07424553.1|  hypothetical protein TMCG_02497 ...   227    6e-58
gi|306805165|ref|ZP_07441833.1|  hypothetical protein TMHG_03870 ...   225    2e-57
gi|289571582|ref|ZP_06451809.1|  transposase [Mycobacterium tuber...   224    4e-57
gi|323717990|gb|EGB27176.1|  transposase [Mycobacterium tuberculo...   223    7e-57
gi|306973804|ref|ZP_07486465.1|  hypothetical protein TMJG_03534 ...   215    1e-54
gi|306799319|ref|ZP_07437621.1|  hypothetical protein TMFG_02919 ...   213    6e-54
gi|306777687|ref|ZP_07416024.1|  hypothetical protein TMAG_03294 ...   202    2e-50
gi|323717427|gb|EGB26631.1|  transposase [Mycobacterium tuberculo...   188    2e-46
gi|306809352|ref|ZP_07446020.1|  hypothetical protein TMGG_03825 ...   180    7e-44
gi|306790600|ref|ZP_07428922.1|  hypothetical protein TMDG_03782 ...   168    3e-40
gi|307082031|ref|ZP_07491201.1|  hypothetical protein TMKG_01095 ...   166    1e-39
gi|306786764|ref|ZP_07425086.1|  transposase [Mycobacterium tuber...   152    1e-35
gi|167966838|ref|ZP_02549115.1|  transposase [Mycobacterium tuber...   113    1e-23
gi|167967093|ref|ZP_02549370.1|  transposase [Mycobacterium tuber...   110    1e-22
gi|308376258|ref|ZP_07668232.1|  hypothetical protein TMHG_02916 ...   100    7e-20
gi|306795513|ref|ZP_07433815.1|  transposase [Mycobacterium tuber...  65.9    2e-09
gi|330990301|ref|ZP_08314272.1|  Insertion element IS110 43.6 kDa...  63.9    8e-09
gi|134287685|ref|YP_001109851.1|  transposase IS116/IS110/IS902 f...  49.7    2e-04
gi|328949147|ref|YP_004366484.1|  transposase IS116/IS110/IS902 f...  44.7    0.005
gi|109897167|ref|YP_660422.1|  transposase IS116/IS110/IS902 [Pse...  43.5    0.010
gi|302388989|ref|YP_003824810.1|  transposase IS116/IS110/IS902 f...  43.1    0.013
gi|119468791|ref|ZP_01611843.1|  ISCps7, transposase [Alteromonad...  42.4    0.024
gi|339485154|ref|YP_004699682.1|  ISPpu10, transposase [Pseudomon...  41.6    0.036
gi|146279518|ref|YP_001169676.1|  IstB ATP binding domain-contain...  41.6    0.038
gi|302388675|ref|YP_003824496.1|  transposase IS116/IS110/IS902 f...  41.6    0.041
gi|55978337|ref|YP_145393.1|  transposase [Thermus thermophilus H...  41.2    0.049
gi|146279580|ref|YP_001169738.1|  hypothetical protein Rsph17025_...  41.2    0.054
gi|125973430|ref|YP_001037340.1|  transposase IS116/IS110/IS902 [...  40.8    0.074
gi|281418368|ref|ZP_06249388.1|  transposase IS110 family protein...  40.8    0.074
gi|77359628|ref|YP_339203.1|  transposase (IS492) [Pseudoalteromo...  40.8    0.075
gi|119470148|ref|ZP_01612914.1|  ISCps7, transposase [Alteromonad...  40.4    0.081
gi|119472901|ref|ZP_01614791.1|  putative transposase (IS492) [Al...  40.4    0.087
gi|261252803|ref|ZP_05945376.1|  iSCps7 transposase [Vibrio orien...  40.0    0.12 
gi|212635278|ref|YP_002311803.1|  ISSwp5, transposase [Shewanella...  40.0    0.12 
gi|336320655|ref|YP_004600623.1|  transposase IS116/IS110/IS902 f...  39.7    0.13 
gi|212633733|ref|YP_002310258.1|  ISSwp5, transposase [Shewanella...  39.7    0.13 
gi|331698109|ref|YP_004334348.1|  transposase IS111A/IS1328/IS153...  39.3    0.18 
gi|55978329|ref|YP_145385.1|  transposase [Thermus thermophilus H...  38.1    0.39 
gi|147678941|ref|YP_001213156.1|  transposase [Pelotomaculum ther...  38.1    0.41 
gi|91792493|ref|YP_562144.1|  transposase IS116/IS110/IS902 [Shew...  38.1    0.41 
gi|218679064|ref|ZP_03526961.1|  two component transcriptional re...  37.4    0.70 
gi|170724756|ref|YP_001758782.1|  transposase IS111A/IS1328/IS153...  37.4    0.78 


>gi|15610484|ref|NP_217865.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|15610980|ref|NP_218361.1| transposase [Mycobacterium tuberculosis H37Rv]
 gi|15842945|ref|NP_337982.1| IS1608', transposase [Mycobacterium tuberculosis CDC1551]
 111 more sequence titles
 Length=163

 Score =  323 bits (827),  Expect = 8e-87, Method: Compositional matrix adjust.
 Identities = 162/163 (99%), Positives = 163/163 (100%), Gaps = 0/163 (0%)

Query  1    VTAENPGRSRRTLVGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDD  60
            +TAENPGRSRRTLVGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDD
Sbjct  1    MTAENPGRSRRTLVGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDD  60

Query  61   IDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASE  120
            IDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASE
Sbjct  61   IDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASE  120

Query  121  VFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            VFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  121  VFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163


>gi|340628815|ref|YP_004747267.1| putative transposase [Mycobacterium canettii CIPT 140010059]
 gi|340007005|emb|CCC46196.1| putative transposase [Mycobacterium canettii CIPT 140010059]
Length=163

 Score =  319 bits (818),  Expect = 7e-86, Method: Compositional matrix adjust.
 Identities = 160/163 (99%), Positives = 162/163 (99%), Gaps = 0/163 (0%)

Query  1    VTAENPGRSRRTLVGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDD  60
            +TAENPGRSRRTLVGIDAAITACHHIAIRDDVGARS RFSVEPTLAGLRTLTDKLSGYDD
Sbjct  1    MTAENPGRSRRTLVGIDAAITACHHIAIRDDVGARSTRFSVEPTLAGLRTLTDKLSGYDD  60

Query  61   IDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASE  120
            IDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASE
Sbjct  61   IDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASE  120

Query  121  VFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            VFDLTPLTLPTPAQLALRRS+IRRAGAVIDANRSWRRLMSLAR
Sbjct  121  VFDLTPLTLPTPAQLALRRSMIRRAGAVIDANRSWRRLMSLAR  163


>gi|307081515|ref|ZP_07490685.1| hypothetical protein TMKG_03694 [Mycobacterium tuberculosis SUMu011]
 gi|308360794|gb|EFP49645.1| hypothetical protein TMKG_03694 [Mycobacterium tuberculosis SUMu011]
Length=125

 Score =  250 bits (639),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%), Gaps = 0/125 (0%)

Query  39   FSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLR  98
            FSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLR
Sbjct  1    FSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLR  60

Query  99   GAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRL  158
            GAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRL
Sbjct  61   GAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRL  120

Query  159  MSLAR  163
            MSLAR
Sbjct  121  MSLAR  125


>gi|306970091|ref|ZP_07482752.1| transposase [Mycobacterium tuberculosis SUMu009]
 gi|308352369|gb|EFP41220.1| transposase [Mycobacterium tuberculosis SUMu009]
Length=122

 Score =  243 bits (621),  Expect = 5e-63, Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)

Query  42   EPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAI  101
            EPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAI
Sbjct  1    EPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAI  60

Query  102  VGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSL  161
            VGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSL
Sbjct  61   VGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSL  120

Query  162  AR  163
            AR
Sbjct  121  AR  122


>gi|306805695|ref|ZP_07442363.1| transposase [Mycobacterium tuberculosis SUMu007]
 gi|308347744|gb|EFP36595.1| transposase [Mycobacterium tuberculosis SUMu007]
Length=119

 Score =  236 bits (603),  Expect = 7e-61, Method: Compositional matrix adjust.
 Identities = 118/119 (99%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  45   LAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGK  104
            +AGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGK
Sbjct  1    MAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGK  60

Query  105  SKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            SKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   SKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  119


>gi|306786893|ref|ZP_07425215.1| hypothetical protein TMDG_01803 [Mycobacterium tuberculosis SUMu004]
 gi|308336364|gb|EFP25215.1| hypothetical protein TMDG_01803 [Mycobacterium tuberculosis SUMu004]
Length=118

 Score =  235 bits (600),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 118/118 (100%), Positives = 118/118 (100%), Gaps = 0/118 (0%)

Query  46   AGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKS  105
            AGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKS
Sbjct  1    AGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKS  60

Query  106  KSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            KSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   KSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  118


>gi|306974325|ref|ZP_07486986.1| transposase [Mycobacterium tuberculosis SUMu010]
 gi|308356318|gb|EFP45169.1| transposase [Mycobacterium tuberculosis SUMu010]
Length=117

 Score =  234 bits (597),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 117/117 (100%), Positives = 117/117 (100%), Gaps = 0/117 (0%)

Query  47   GLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSK  106
            GLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSK
Sbjct  1    GLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSK  60

Query  107  SDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            SDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   SDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  117


>gi|306795128|ref|ZP_07433430.1| hypothetical protein TMEG_03734 [Mycobacterium tuberculosis SUMu005]
 gi|308336604|gb|EFP25455.1| hypothetical protein TMEG_03734 [Mycobacterium tuberculosis SUMu005]
Length=116

 Score =  231 bits (588),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 115/116 (99%), Positives = 116/116 (100%), Gaps = 0/116 (0%)

Query  48   LRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKS  107
            +RTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKS
Sbjct  1    MRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKS  60

Query  108  DVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            DVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   DVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  116


>gi|306786231|ref|ZP_07424553.1| hypothetical protein TMCG_02497 [Mycobacterium tuberculosis SUMu003]
 gi|308329156|gb|EFP18007.1| hypothetical protein TMCG_02497 [Mycobacterium tuberculosis SUMu003]
Length=113

 Score =  227 bits (578),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%)

Query  51   LTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVI  110
            LTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVI
Sbjct  1    LTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVI  60

Query  111  DAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            DAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   DAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  113


>gi|306805165|ref|ZP_07441833.1| hypothetical protein TMHG_03870 [Mycobacterium tuberculosis SUMu008]
 gi|308348280|gb|EFP37131.1| hypothetical protein TMHG_03870 [Mycobacterium tuberculosis SUMu008]
Length=112

 Score =  225 bits (573),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)

Query  52   TDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVID  111
            TDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVID
Sbjct  1    TDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVID  60

Query  112  AEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            AEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   AEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  112


>gi|289571582|ref|ZP_06451809.1| transposase [Mycobacterium tuberculosis T17]
 gi|289545336|gb|EFD48984.1| transposase [Mycobacterium tuberculosis T17]
Length=115

 Score =  224 bits (570),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 111/113 (99%), Positives = 112/113 (99%), Gaps = 0/113 (0%)

Query  51   LTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVI  110
             TDKLSGYDDIDATV+PTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVI
Sbjct  3    FTDKLSGYDDIDATVDPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVI  62

Query  111  DAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            DAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  63   DAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  115


>gi|323717990|gb|EGB27176.1| transposase [Mycobacterium tuberculosis CDC1551A]
Length=111

 Score =  223 bits (568),  Expect = 7e-57, Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)

Query  53   DKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDA  112
            DKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDA
Sbjct  1    DKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDA  60

Query  113  EVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            EVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   EVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  111


>gi|306973804|ref|ZP_07486465.1| hypothetical protein TMJG_03534 [Mycobacterium tuberculosis SUMu010]
 gi|308356846|gb|EFP45697.1| hypothetical protein TMJG_03534 [Mycobacterium tuberculosis SUMu010]
Length=107

 Score =  215 bits (548),  Expect = 1e-54, Method: Compositional matrix adjust.
 Identities = 107/107 (100%), Positives = 107/107 (100%), Gaps = 0/107 (0%)

Query  57   GYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLT  116
            GYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLT
Sbjct  1    GYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLT  60

Query  117  RASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            RASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   RASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  107


>gi|306799319|ref|ZP_07437621.1| hypothetical protein TMFG_02919 [Mycobacterium tuberculosis SUMu006]
 gi|308340477|gb|EFP29328.1| hypothetical protein TMFG_02919 [Mycobacterium tuberculosis SUMu006]
Length=106

 Score =  213 bits (543),  Expect = 6e-54, Method: Compositional matrix adjust.
 Identities = 106/106 (100%), Positives = 106/106 (100%), Gaps = 0/106 (0%)

Query  58   YDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTR  117
            YDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTR
Sbjct  1    YDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTR  60

Query  118  ASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            ASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   ASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  106


>gi|306777687|ref|ZP_07416024.1| hypothetical protein TMAG_03294 [Mycobacterium tuberculosis SUMu001]
 gi|308213978|gb|EFO73377.1| hypothetical protein TMAG_03294 [Mycobacterium tuberculosis SUMu001]
Length=101

 Score =  202 bits (513),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%), Gaps = 0/101 (0%)

Query  63   ATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVF  122
            ATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVF
Sbjct  1    ATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVF  60

Query  123  DLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            DLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   DLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  101


>gi|323717427|gb|EGB26631.1| transposase [Mycobacterium tuberculosis CDC1551A]
Length=94

 Score =  188 bits (478),  Expect = 2e-46, Method: Compositional matrix adjust.
 Identities = 94/94 (100%), Positives = 94/94 (100%), Gaps = 0/94 (0%)

Query  70   MTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTL  129
            MTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTL
Sbjct  1    MTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTL  60

Query  130  PTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            PTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   PTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  94


>gi|306809352|ref|ZP_07446020.1| hypothetical protein TMGG_03825 [Mycobacterium tuberculosis SUMu007]
 gi|308344347|gb|EFP33198.1| hypothetical protein TMGG_03825 [Mycobacterium tuberculosis SUMu007]
Length=91

 Score =  180 bits (456),  Expect = 7e-44, Method: Compositional matrix adjust.
 Identities = 90/91 (99%), Positives = 91/91 (100%), Gaps = 0/91 (0%)

Query  73   LPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTP  132
            +PLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTP
Sbjct  1    MPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTP  60

Query  133  AQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            AQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   AQLALRRSVIRRAGAVIDANRSWRRLMSLAR  91


>gi|306790600|ref|ZP_07428922.1| hypothetical protein TMDG_03782 [Mycobacterium tuberculosis SUMu004]
 gi|308332989|gb|EFP21840.1| hypothetical protein TMDG_03782 [Mycobacterium tuberculosis SUMu004]
Length=84

 Score =  168 bits (425),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

Query  80   ENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRR  139
            ENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRR
Sbjct  1    ENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRR  60

Query  140  SVIRRAGAVIDANRSWRRLMSLAR  163
            SVIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   SVIRRAGAVIDANRSWRRLMSLAR  84


>gi|307082031|ref|ZP_07491201.1| hypothetical protein TMKG_01095 [Mycobacterium tuberculosis SUMu011]
 gi|308360275|gb|EFP49126.1| hypothetical protein TMKG_01095 [Mycobacterium tuberculosis SUMu011]
Length=83

 Score =  166 bits (419),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  81   NAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRS  140
            NAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRS
Sbjct  1    NAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRS  60

Query  141  VIRRAGAVIDANRSWRRLMSLAR  163
            VIRRAGAVIDANRSWRRLMSLAR
Sbjct  61   VIRRAGAVIDANRSWRRLMSLAR  83


>gi|306786764|ref|ZP_07425086.1| transposase [Mycobacterium tuberculosis SUMu003]
 gi|308328620|gb|EFP17471.1| transposase [Mycobacterium tuberculosis SUMu003]
Length=77

 Score =  152 bits (385),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 77/77 (100%), Positives = 77/77 (100%), Gaps = 0/77 (0%)

Query  87   HMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAG  146
            HMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAG
Sbjct  1    HMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAG  60

Query  147  AVIDANRSWRRLMSLAR  163
            AVIDANRSWRRLMSLAR
Sbjct  61   AVIDANRSWRRLMSLAR  77


>gi|167966838|ref|ZP_02549115.1| transposase [Mycobacterium tuberculosis H37Ra]
Length=58

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 55/58 (95%), Positives = 56/58 (97%), Gaps = 0/58 (0%)

Query  1   VTAENPGRSRRTLVGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGY  58
           +TAENPGRSRRTLVGIDAAITACHHIAIRDDVGARSIRFSVE TLAGLRTL DKLSGY
Sbjct  1   MTAENPGRSRRTLVGIDAAITACHHIAIRDDVGARSIRFSVETTLAGLRTLNDKLSGY  58


>gi|167967093|ref|ZP_02549370.1| transposase [Mycobacterium tuberculosis H37Ra]
Length=61

 Score =  110 bits (274),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 56/61 (92%), Positives = 57/61 (94%), Gaps = 0/61 (0%)

Query  103  GKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLA  162
             +   DVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLA
Sbjct  1    SRGSPDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLA  60

Query  163  R  163
            R
Sbjct  61   R  61


>gi|308376258|ref|ZP_07668232.1| hypothetical protein TMHG_02916 [Mycobacterium tuberculosis SUMu008]
 gi|308351682|gb|EFP40533.1| hypothetical protein TMHG_02916 [Mycobacterium tuberculosis SUMu008]
Length=51

 Score =  100 bits (249),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%), Gaps = 0/51 (0%)

Query  113  EVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            EVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR
Sbjct  1    EVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  51


>gi|306795513|ref|ZP_07433815.1| transposase [Mycobacterium tuberculosis SUMu006]
 gi|308343960|gb|EFP32811.1| transposase [Mycobacterium tuberculosis SUMu006]
Length=50

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 31/35 (89%), Positives = 33/35 (95%), Gaps = 0/35 (0%)

Query  103  GKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLAL  137
            G+SKSDVIDAEVLTRASEVFDLTPLTLPTPAQ  +
Sbjct  4    GQSKSDVIDAEVLTRASEVFDLTPLTLPTPAQFGV  38


>gi|330990301|ref|ZP_08314272.1| Insertion element IS110 43.6 kDa protein [Gluconacetobacter sp. 
SXCC-1]
 gi|329762605|gb|EGG79078.1| Insertion element IS110 43.6 kDa protein [Gluconacetobacter sp. 
SXCC-1]
Length=445

 Score = 63.9 bits (154),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 52/157 (34%), Positives = 78/157 (50%), Gaps = 8/157 (5%)

Query  14   VGIDAAITACHHIAIRDD--VGARSIRFSV-EPTLAGL-RTLTDKLSGYDDIDATVEPTS  69
            +GID AI   H   I DD     R+IRF   +P+LA   +T    L   D I A +EPT 
Sbjct  6    IGIDLAIRGDHLAQIYDDGRPNGRAIRFRHDQPSLAAFVQTAVMGLRADDHIQAIMEPTG  65

Query  70   MTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFD---LTP  126
            M+W P+   + +AG T+     +    LR  +   +K+D+ DA++L  A   F    L P
Sbjct  66   MSWFPVAHHLADAGVTVARVKGKRVKALRRYLSEHAKTDMADAQILA-AIPSFGGPRLDP  124

Query  127  LTLPTPAQLALRRSVIRRAGAVIDANRSWRRLMSLAR  163
            + +P P   AL+R   +R+    +   + RRL+ L R
Sbjct  125  VHIPDPRSHALQRLTKQRSRFQNEIADARRRLLDLIR  161


>gi|134287685|ref|YP_001109851.1| transposase IS116/IS110/IS902 family protein [Burkholderia vietnamiensis 
G4]
 gi|134287727|ref|YP_001109893.1| transposase IS116/IS110/IS902 family protein [Burkholderia vietnamiensis 
G4]
 gi|134287782|ref|YP_001109948.1| transposase IS116/IS110/IS902 family protein [Burkholderia vietnamiensis 
G4]
 39 more sequence titles
 Length=453

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 48/144 (34%), Positives = 66/144 (46%), Gaps = 12/144 (8%)

Query  10   RRTLVGIDAAITACHHIAIRDDVGA--RSIRFSVEPTLAGLRTLTDKLS---GYD-DIDA  63
            R   VGID AI+A     I DD  A  + IRF +  T   LR     +    G D  I A
Sbjct  10   RHRTVGIDLAISAVQVAQIFDDGRAIGKPIRFRLTST--DLRRFVSAIKSGVGADTPITA  67

Query  64   TVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVF-  122
             +EPT M W P+   ++ AG  +     +    LR  +   +K+D  DA VL  A   F 
Sbjct  68   VMEPTGMAWFPVANWLQRAGIKVIRVKGQRVKALRKYLSEHAKTDAADAHVLG-AIPGFG  126

Query  123  --DLTPLTLPTPAQLALRRSVIRR  144
               L P+ +P P Q +L+R   +R
Sbjct  127  GRGLDPVHVPGPEQHSLQRLTKQR  150


>gi|328949147|ref|YP_004366484.1| transposase IS116/IS110/IS902 family protein [Treponema succinifaciens 
DSM 2489]
 gi|328449471|gb|AEB15187.1| transposase IS116/IS110/IS902 family protein [Treponema succinifaciens 
DSM 2489]
Length=413

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 37/133 (28%), Positives = 58/133 (44%), Gaps = 10/133 (7%)

Query  13   LVGIDAAITACHHIAIRDDVG---ARSIRFSVEPTLAGLRTLTDKLSGYD----DIDATV  65
            +VGID A    H  AI    G    RS RF+   T  G   L DKL+  D    + +  +
Sbjct  3    IVGIDIA-KKSHQAAIMKPDGTLVGRSFRFT--NTKQGFEFLMDKLAAVDSNLENFEFGM  59

Query  66   EPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLT  125
            E T   WL L   + +   T+H+        LR   + K+K+D +DA+++ +   +   +
Sbjct  60   EATGHYWLNLYTWLADNHATVHVINPLQSDALRNLYIRKTKTDSVDAKIIAQVIRIGQYS  119

Query  126  PLTLPTPAQLALR  138
               L     L +R
Sbjct  120  ETKLADDRMLMMR  132


>gi|109897167|ref|YP_660422.1| transposase IS116/IS110/IS902 [Pseudoalteromonas atlantica T6c]
 gi|109897189|ref|YP_660444.1| transposase IS116/IS110/IS902 [Pseudoalteromonas atlantica T6c]
 gi|109898164|ref|YP_661419.1| transposase IS116/IS110/IS902 [Pseudoalteromonas atlantica T6c]
 10 more sequence titles
 Length=318

 Score = 43.5 bits (101),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 36/143 (26%), Positives = 59/143 (42%), Gaps = 14/143 (9%)

Query  5    NPGRSRRTLVGIDAAITACHHIAIRDDVGAR--SIRFSVEPTLAGLRTLTDKLSGYDDID  62
            NP  ++   VG+D           + D+  R   I F+V     G++    K+  +    
Sbjct  2    NPKTNQSVNVGVDTG-------KFQLDIYIRPHDIYFTVSNDEKGIKEAIKKIQQHSPGR  54

Query  63   ATVEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVF  122
              +E T    +P  IA  NA     +A   H  R  GAI  ++K+D +DA+++    E  
Sbjct  55   IVIEATGRLEMPFIIACANANLPFVVANPIHIKRFAGAIGQRAKTDKLDAQLIAHYGEAI  114

Query  123  -----DLTPLTLPTPAQLALRRS  140
                  L P T+   + L  RR+
Sbjct  115  QPKLSQLKPDTMQAMSDLVARRN  137


>gi|302388989|ref|YP_003824810.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter 
oceani DSM 16646]
 gi|302199617|gb|ADL07187.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter 
oceani DSM 16646]
Length=407

 Score = 43.1 bits (100),  Expect = 0.013, Method: Compositional matrix adjust.
 Identities = 27/98 (28%), Positives = 43/98 (44%), Gaps = 5/98 (5%)

Query  15   GIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGY----DDIDATVEPTSM  70
            GID A    H + + +D G   ++  ++    G+  L   L       DD+   +E TS 
Sbjct  5    GIDVA-KHSHEVCLVNDSGDIVLKMHLDNNHKGMNKLLQALERLGLKPDDVKFCLEATSH  63

Query  71   TWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSD  108
             WLP+   + N G  +H+        LR   V K+K+D
Sbjct  64   YWLPIYCYLTNQGFELHVINPIQSDALRNLYVRKTKTD  101


>gi|119468791|ref|ZP_01611843.1| ISCps7, transposase [Alteromonadales bacterium TW-7]
 gi|119472898|ref|ZP_01614788.1| ISCps7, transposase [Alteromonadales bacterium TW-7]
 gi|119444671|gb|EAW25979.1| ISCps7, transposase [Alteromonadales bacterium TW-7]
 gi|119447847|gb|EAW29113.1| ISCps7, transposase [Alteromonadales bacterium TW-7]
Length=318

 Score = 42.4 bits (98),  Expect = 0.024, Method: Compositional matrix adjust.
 Identities = 29/109 (27%), Positives = 47/109 (44%), Gaps = 5/109 (4%)

Query  37   IRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCAR  96
            I F+V     G++     +  Y      +E T    +P  +A  NA     +A   H  R
Sbjct  29   IYFTVPNDDKGIKEAVKTIKKYKPERIVIEATGRLEMPFILACANANLPFTIANPIHVKR  88

Query  97   LRGAIVGKSKSDVIDAEVLTRASEVF-----DLTPLTLPTPAQLALRRS  140
              GAI  ++K+D +DA+++   SE        L P T+   + L  RR+
Sbjct  89   FAGAIGQRAKTDKLDAQLIAHYSEAIKPKLSQLKPDTMQAMSDLVTRRN  137


>gi|339485154|ref|YP_004699682.1| ISPpu10, transposase [Pseudomonas putida S16]
 gi|339487095|ref|YP_004701623.1| ISPpu10, transposase [Pseudomonas putida S16]
 gi|339487638|ref|YP_004702166.1| ISPpu10, transposase [Pseudomonas putida S16]
 7 more sequence titles
 Length=329

 Score = 41.6 bits (96),  Expect = 0.036, Method: Compositional matrix adjust.
 Identities = 40/146 (28%), Positives = 67/146 (46%), Gaps = 10/146 (6%)

Query  11   RTLVGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSM  70
            + L+G+D A      + I DD  A  I  ++  T A ++     LSG   +   +E T++
Sbjct  23   KRLIGVDVAKA---ELVIWDDESAELI--AIPNTKAAIKKWLKGLSG--AMSVAIEATNI  75

Query  71   TWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTR--ASEVFDLTPLT  128
              +  T      G T+++      +  R  +  ++K+D IDA++L R   +E  DLTP  
Sbjct  76   YHVLFTDLAFEFGHTIYVVDGYALSHYRKGVNVRAKTDAIDAQLLARYLKNEGQDLTPWA  135

Query  129  LPTPAQLALRRSVIRRAGAVIDANRS  154
             P PA      S+ RR   ++ A  S
Sbjct  136  -PPPAIYRQLLSLFRRRAGLVQARTS  160


>gi|146279518|ref|YP_001169676.1| IstB ATP binding domain-containing protein [Rhodobacter sphaeroides 
ATCC 17025]
 gi|145557759|gb|ABP72371.1| IstB domain protein ATP-binding protein [Rhodobacter sphaeroides 
ATCC 17025]
Length=385

 Score = 41.6 bits (96),  Expect = 0.038, Method: Compositional matrix adjust.
 Identities = 31/96 (33%), Positives = 49/96 (52%), Gaps = 5/96 (5%)

Query  65   VEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVF--  122
            +EPT M+W P+   + ++G  +     +    LR  +   +K+D+ DA VL  A   F  
Sbjct  1    MEPTGMSWFPVAHRLADSGIVVTRVKGKRVRALRRYLSEHAKTDLADAHVLA-AIPGFGG  59

Query  123  -DLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRR  157
             +L PL LP P   AL+R + ++ G   DA  + RR
Sbjct  60   PELDPLHLPVPKSHALQR-LTKQRGRFQDAIAAARR  94


>gi|302388675|ref|YP_003824496.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter 
oceani DSM 16646]
 gi|302388880|ref|YP_003824701.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter 
oceani DSM 16646]
 gi|302390214|ref|YP_003826035.1| transposase IS116/IS110/IS902 family protein [Thermosediminibacter 
oceani DSM 16646]
 7 more sequence titles
 Length=407

 Score = 41.6 bits (96),  Expect = 0.041, Method: Compositional matrix adjust.
 Identities = 26/98 (27%), Positives = 42/98 (43%), Gaps = 5/98 (5%)

Query  15   GIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGY----DDIDATVEPTSM  70
            GID A    H + + +D G   ++  ++    G+  L   L       DD+   +E T  
Sbjct  5    GIDVA-KHSHEVCLVNDSGDIVLKMHLDNNHKGMNKLLQALERLGLKPDDVKFCLEATGH  63

Query  71   TWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSD  108
             WLP+   + N G  +H+        LR   V K+K+D
Sbjct  64   YWLPIYCYLTNQGFELHVINPIQSDALRNLYVRKTKTD  101


>gi|55978337|ref|YP_145393.1| transposase [Thermus thermophilus HB8]
 gi|55980890|ref|YP_144187.1| transposase [Thermus thermophilus HB8]
 gi|320383|pir||B37388 probable DNA-binding protein 1B - Thermus aquaticus insertion 
sequence IS1000B
 gi|155109|gb|AAA27498.1| ORF 1B [Thermus thermophilus]
 gi|55772303|dbj|BAD70744.1| transposase (probable DNA-binding protein 1A) [Thermus thermophilus 
HB8]
 gi|55773510|dbj|BAD71950.1| transposase [Thermus thermophilus HB8]
Length=317

 Score = 41.2 bits (95),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 34/121 (29%), Positives = 52/121 (43%), Gaps = 4/121 (3%)

Query  12   TLVGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMT  71
            T  GID + T      + +      +RF   P   G + L   L+ ++     +EPTS  
Sbjct  2    TFAGIDVSKTHLDLALVSNSPKPTRLRFPNSPE--GRQALLAALAHHNPAWVALEPTSAY  59

Query  72   WLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVF--DLTPLTL  129
             LPL   +      + +    H A  R A   + K+D  DA +L R ++V+  DL   TL
Sbjct  60   HLPLLKLLAENRLQVALVNPYHLAAFRKAKGERQKTDRQDALLLARYAQVYHEDLRAYTL  119

Query  130  P  130
            P
Sbjct  120  P  120


>gi|146279580|ref|YP_001169738.1| hypothetical protein Rsph17025_3564 [Rhodobacter sphaeroides 
ATCC 17025]
 gi|145557821|gb|ABP72433.1| hypothetical protein Rsph17025_3564 [Rhodobacter sphaeroides 
ATCC 17025]
Length=328

 Score = 41.2 bits (95),  Expect = 0.054, Method: Compositional matrix adjust.
 Identities = 32/96 (34%), Positives = 49/96 (52%), Gaps = 5/96 (5%)

Query  65   VEPTSMTWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVF--  122
            +EPT M+W P+   + ++G  +     +    LR  +   +K+D+ DA VL  A   F  
Sbjct  1    MEPTGMSWFPVAHRLADSGIVVTRVKGKRVRALRRYLSEHAKTDLADAHVLA-AIPGFGG  59

Query  123  -DLTPLTLPTPAQLALRRSVIRRAGAVIDANRSWRR  157
             +L PL LP P   AL+R + R+ G   DA  + RR
Sbjct  60   PELDPLHLPVPRSHALQR-LTRQRGRFQDAIAAARR  94


>gi|125973430|ref|YP_001037340.1| transposase IS116/IS110/IS902 [Clostridium thermocellum ATCC 
27405]
 gi|125974312|ref|YP_001038222.1| transposase IS116/IS110/IS902 [Clostridium thermocellum ATCC 
27405]
 gi|281416701|ref|ZP_06247721.1| transposase IS110 family protein [Clostridium thermocellum JW20]
 7 more sequence titles
 Length=406

 Score = 40.8 bits (94),  Expect = 0.074, Method: Compositional matrix adjust.
 Identities = 31/105 (30%), Positives = 46/105 (44%), Gaps = 5/105 (4%)

Query  15   GIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYD----DIDATVEPTSM  70
            GID A    H I I D+ G   ++  V+ T  GL  L   L   +    +++  +E T  
Sbjct  5    GIDVA-KYRHEICIVDESGNVILQIFVDNTRNGLDKLIHNLKRLEIEVSNVEFCLEATGH  63

Query  71   TWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVL  115
             WL L   +   G  +H+        LR   V K+K+D  DA +L
Sbjct  64   YWLSLYYHLTELGYKIHVINPIQSDALRNFYVRKTKTDRKDAHLL  108


>gi|281418368|ref|ZP_06249388.1| transposase IS110 family protein [Clostridium thermocellum JW20]
 gi|281409770|gb|EFB40028.1| transposase IS110 family protein [Clostridium thermocellum JW20]
Length=406

 Score = 40.8 bits (94),  Expect = 0.074, Method: Compositional matrix adjust.
 Identities = 31/105 (30%), Positives = 46/105 (44%), Gaps = 5/105 (4%)

Query  15   GIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYD----DIDATVEPTSM  70
            GID A    H I I D+ G   ++  V+ T  GL  L   L   +    +++  +E T  
Sbjct  5    GIDVA-KYRHEICIVDESGNVILQIFVDNTRNGLDKLIHNLKRLEIEVSNVEFCLEATGH  63

Query  71   TWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVL  115
             WL L   +   G  +H+        LR   V K+K+D  DA +L
Sbjct  64   YWLSLYYHLTELGYKIHVINPIQSDALRNFYVRKTKTDRKDAHLL  108


>gi|77359628|ref|YP_339203.1| transposase (IS492) [Pseudoalteromonas haloplanktis TAC125]
 gi|76874539|emb|CAI85760.1| putative transposase (IS492) [Pseudoalteromonas haloplanktis 
TAC125]
Length=317

 Score = 40.8 bits (94),  Expect = 0.075, Method: Compositional matrix adjust.
 Identities = 29/114 (26%), Positives = 49/114 (43%), Gaps = 1/114 (0%)

Query  37   IRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCAR  96
            I F+VE    G++     L  +     T+E T     P  +    A     +A   +  R
Sbjct  30   IYFTVENNDGGIKHAIKTLKKHPITRVTIEATGRLEHPFIMVCAQANIPFVVANPVNIKR  89

Query  97   LRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRRAGAVID  150
              GAI  K+K+D +DA+++    E     PL+   P Q+ L   ++ R   ++D
Sbjct  90   FAGAIGQKAKTDKLDAQLIAHFGEAIK-PPLSCLKPEQMRLMSDLLSRRRQLMD  142


>gi|119470148|ref|ZP_01612914.1| ISCps7, transposase [Alteromonadales bacterium TW-7]
 gi|119446569|gb|EAW27843.1| ISCps7, transposase [Alteromonadales bacterium TW-7]
Length=223

 Score = 40.4 bits (93),  Expect = 0.081, Method: Compositional matrix adjust.
 Identities = 28/109 (26%), Positives = 46/109 (43%), Gaps = 5/109 (4%)

Query  37   IRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCAR  96
            I F+V     G++     +  Y      +E T    +P  +A  NA     +A   H  R
Sbjct  29   IYFTVPNDDKGIKEAVKTIKKYKPERIVIEATGRLEMPFILACANANLPFTIANPIHVKR  88

Query  97   LRGAIVGKSKSDVIDAEVLTRASEVF-----DLTPLTLPTPAQLALRRS  140
              GAI  ++K+D +D +++   SE        L P T+   + L  RR+
Sbjct  89   FAGAIGQRAKTDKLDVQLIAHYSEAIKPKLSQLKPETMQAMSDLVTRRN  137


>gi|119472901|ref|ZP_01614791.1| putative transposase (IS492) [Alteromonadales bacterium TW-7]
 gi|119444674|gb|EAW25982.1| putative transposase (IS492) [Alteromonadales bacterium TW-7]
Length=129

 Score = 40.4 bits (93),  Expect = 0.087, Method: Compositional matrix adjust.
 Identities = 23/84 (28%), Positives = 38/84 (46%), Gaps = 0/84 (0%)

Query  37   IRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCAR  96
            I F+V     G++     +  Y      +E T    +P  +A  NA     +A   H  R
Sbjct  29   IYFTVPNDDKGIKEAVKTIKKYKPERIVIEATGRLEMPFILACANANLPFTIANPIHVKR  88

Query  97   LRGAIVGKSKSDVIDAEVLTRASE  120
              GAI  ++K+D +DA+++   SE
Sbjct  89   FAGAIGQRAKTDKLDAQLIAHYSE  112


>gi|261252803|ref|ZP_05945376.1| iSCps7 transposase [Vibrio orientalis CIP 102891 = ATCC 33934]
 gi|260936194|gb|EEX92183.1| iSCps7 transposase [Vibrio orientalis CIP 102891 = ATCC 33934]
 gi|342818443|gb|EGU53309.1| transposase IS116/IS110/IS902 [Vibrio orientalis CIP 102891 = 
ATCC 33934]
Length=314

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 38/139 (28%), Positives = 57/139 (42%), Gaps = 10/139 (7%)

Query  14   VGIDAAITACHHIAIRDDVGARSIR--FSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMT  71
            VG+D          ++ D+  R ++  FSVE T  G+R     +  +      +E T   
Sbjct  7    VGVDTG-------KLQLDIHIRPLKLFFSVENTEKGIRQALKIIKLHRPNRIVIEATGRL  59

Query  72   WLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPT  131
             +P  +A   A   +  A   H  R  GAI  + KSD  DAE++    EV     LT   
Sbjct  60   EMPFILACAEAKLPIVRANPLHIKRFAGAIGRRVKSDKFDAELIAYYGEVIQ-PALTSIK  118

Query  132  PAQLALRRSVIRRAGAVID  150
            P  L L   +I R   ++ 
Sbjct  119  PKSLRLMSDLITRRNQLLS  137


>gi|212635278|ref|YP_002311803.1| ISSwp5, transposase [Shewanella piezotolerans WP3]
 gi|212556762|gb|ACJ29216.1| ISSwp5, transposase [Shewanella piezotolerans WP3]
Length=316

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 29/109 (27%), Positives = 46/109 (43%), Gaps = 5/109 (4%)

Query  37   IRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCAR  96
            I F+V     G++     +  Y      +E T    +P  +A  NA     +A   H  R
Sbjct  29   IYFTVSNDEKGIKEAVRLIKKYHPERIVIEATGRLEMPFIMACANANLPFVIANPVHIKR  88

Query  97   LRGAIVGKSKSDVIDAEVLTRASEVFD-----LTPLTLPTPAQLALRRS  140
              GAI  ++K+D +DA+++   SE        L P  +   + L  RRS
Sbjct  89   FAGAIGQRAKTDKLDAQLIAHYSEAIKPRLSTLKPDVMQAMSDLVGRRS  137


>gi|336320655|ref|YP_004600623.1| transposase IS116/IS110/IS902 family protein [Cellvibrio gilvus 
ATCC 13127]
 gi|336104236|gb|AEI12055.1| transposase IS116/IS110/IS902 family protein [Cellvibrio gilvus 
ATCC 13127]
Length=363

 Score = 39.7 bits (91),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 41/121 (34%), Positives = 50/121 (42%), Gaps = 13/121 (10%)

Query  12   TLVGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMT  71
            T+VGIDA     H +   DDVG R    +VE    G R +   L  +D +   VE     
Sbjct  2    TVVGIDAH-KNWHTLVAVDDVGKRLAVLTVEARAVGHRQILTWLEQFDGVAVAVEDCRHL  60

Query  72   WLPLTIAVENAGD------TMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVFDLT  125
               L   + NAG       T  MAG R   R  G      KSD IDAE + R +   D  
Sbjct  61   TRRLEADLLNAGHQVVRVHTRLMAGMRRSGREPG------KSDPIDAEAVARVALREDGL  114

Query  126  P  126
            P
Sbjct  115  P  115


>gi|212633733|ref|YP_002310258.1| ISSwp5, transposase [Shewanella piezotolerans WP3]
 gi|212634732|ref|YP_002311257.1| ISSwp5, transposase [Shewanella piezotolerans WP3]
 gi|212635247|ref|YP_002311772.1| ISSwp5, transposase [Shewanella piezotolerans WP3]
 gi|212637595|ref|YP_002314120.1| ISSwp5, transposase [Shewanella piezotolerans WP3]
 gi|212555217|gb|ACJ27671.1| ISSwp5, transposase [Shewanella piezotolerans WP3]
 gi|212556216|gb|ACJ28670.1| ISSwp5, transposase [Shewanella piezotolerans WP3]
 gi|212556731|gb|ACJ29185.1| ISSwp5, transposase [Shewanella piezotolerans WP3]
 gi|212559079|gb|ACJ31533.1| ISSwp5, transposase [Shewanella piezotolerans WP3]
Length=316

 Score = 39.7 bits (91),  Expect = 0.13, Method: Compositional matrix adjust.
 Identities = 29/109 (27%), Positives = 46/109 (43%), Gaps = 5/109 (4%)

Query  37   IRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCAR  96
            I F+V     G++     +  Y      +E T    +P  +A  NA     +A   H  R
Sbjct  29   IYFTVSNDEKGIKEAVRLIKKYHPERIVIEATGRLEMPFIMACANANLPFVIANPVHIKR  88

Query  97   LRGAIVGKSKSDVIDAEVLTRASEVFD-----LTPLTLPTPAQLALRRS  140
              GAI  ++K+D +DA+++   SE        L P  +   + L  RRS
Sbjct  89   FAGAIGQRAKTDKLDAQLIAHYSEAIKPRLSTLKPDVMQAMSDLVGRRS  137


>gi|331698109|ref|YP_004334348.1| transposase IS111A/IS1328/IS1533 [Pseudonocardia dioxanivorans 
CB1190]
 gi|326952798|gb|AEA26495.1| transposase IS111A/IS1328/IS1533 [Pseudonocardia dioxanivorans 
CB1190]
Length=448

 Score = 39.3 bits (90),  Expect = 0.18, Method: Compositional matrix adjust.
 Identities = 41/134 (31%), Positives = 62/134 (47%), Gaps = 7/134 (5%)

Query  15   GIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLP  74
            G+D + +  H + + DD GA   R +V  T AGLR L   L  +      +E       P
Sbjct  25   GVDWSWSE-HAVCVIDDTGAALERLTVRHTAAGLRKLVTALHQHQVAGVAIERGDG---P  80

Query  75   LTIAVENAGDTMHMAGARHCARLRG-AIVGKSKSDVIDAEVLTRA--SEVFDLTPLTLPT  131
            +  A+  AG T+ +   +H   LR      ++K D  DA +L     ++   LTPLT+ T
Sbjct  81   VVAALLEAGLTVFLIVPQHVTALRSRYTTTRNKDDRFDAYLLADVLRTDRRRLTPLTVDT  140

Query  132  PAQLALRRSVIRRA  145
             A + LR  +  RA
Sbjct  141  DATVGLRMLIRTRA  154


>gi|55978329|ref|YP_145385.1| transposase [Thermus thermophilus HB8]
 gi|320384|pir||A37388 probable DNA-binding protein 1A - Thermus aquaticus insertion 
sequence IS1000A
 gi|155108|gb|AAA27497.1| ORF 1A [Thermus thermophilus]
 gi|55773502|dbj|BAD71942.1| transposase [Thermus thermophilus HB8]
Length=317

 Score = 38.1 bits (87),  Expect = 0.39, Method: Compositional matrix adjust.
 Identities = 33/124 (27%), Positives = 52/124 (42%), Gaps = 4/124 (3%)

Query  12   TLVGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMT  71
            T  GID + T      + +      +RF   P   G + L   L+ ++     +EPT   
Sbjct  2    TFAGIDVSKTHLDLALVSNSPKPTRLRFPNSPE--GRQALLAALAHHNPAWVALEPTGAY  59

Query  72   WLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSDVIDAEVLTRASEVF--DLTPLTL  129
             LPL   +      + +    H A  R A   + K+D  DA +L R ++V+  +L   TL
Sbjct  60   HLPLLKLLAENRLQVALVNPYHLAAFRKAKGERQKTDRQDALLLARYAQVYHGELWAYTL  119

Query  130  PTPA  133
            P  A
Sbjct  120  PPEA  123


>gi|147678941|ref|YP_001213156.1| transposase [Pelotomaculum thermopropionicum SI]
 gi|146275038|dbj|BAF60787.1| hypothetical transposase [Pelotomaculum thermopropionicum SI]
Length=405

 Score = 38.1 bits (87),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 24/98 (25%), Positives = 39/98 (40%), Gaps = 5/98 (5%)

Query  15   GIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYD----DIDATVEPTSM  70
            GID A    H + + DD G   ++  ++    G+      L   D     +   +E T  
Sbjct  5    GIDVA-KYRHEVCLLDDAGNVVLQMHIDNNQKGMNKFLQALERLDIEPDSVKFCLEATGH  63

Query  71   TWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSKSD  108
             WLP+   +   G  +H+        LR   V K+K+D
Sbjct  64   YWLPIYCHLSELGFQLHVINPIQSDALRNLYVRKAKTD  101


>gi|91792493|ref|YP_562144.1| transposase IS116/IS110/IS902 [Shewanella denitrificans OS217]
 gi|91714495|gb|ABE54421.1| transposase IS116/IS110/IS902 [Shewanella denitrificans OS217]
Length=323

 Score = 38.1 bits (87),  Expect = 0.41, Method: Compositional matrix adjust.
 Identities = 29/108 (27%), Positives = 48/108 (45%), Gaps = 1/108 (0%)

Query  37   IRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCAR  96
            I F+V     G+R   +K+  +      VE T    +P  +A   A     +A   H  R
Sbjct  29   IFFTVANDEKGIRDAINKIKIHKPQCIVVEATGRLEMPFILACSEAKLPFVIANPMHVKR  88

Query  97   LRGAIVGKSKSDVIDAEVLTRASEVFDLTPLTLPTPAQLALRRSVIRR  144
              GAI  ++K+D +DAE++   +E      LT   P ++ L   ++ R
Sbjct  89   FAGAIGRRAKNDRLDAELIAHYAEAIK-PKLTELKPEKIRLMSDLVTR  135


>gi|218679064|ref|ZP_03526961.1| two component transcriptional regulator, LuxR family protein 
[Rhizobium etli CIAT 894]
Length=227

 Score = 37.4 bits (85),  Expect = 0.70, Method: Compositional matrix adjust.
 Identities = 33/101 (33%), Positives = 47/101 (47%), Gaps = 17/101 (16%)

Query  13   LVGIDAAITACHHIAIRDDVGARSIRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSM--  70
            LV +D A      I++RDD+ A + RF   P      TL   LS  DD++   +   M  
Sbjct  72   LVALDLAGRGVESISLRDDLAAIATRFPEAPI-----TL---LSDTDDVNIARQALKMGI  123

Query  71   -----TWLPLTIAVENAGDTMHMAGARHCARLRGAIVGKSK  106
                 T LP+ IA+  AG  + +AG   C +L GA+   S 
Sbjct  124  RGFFSTSLPIDIAL--AGLRLVLAGGTFCPQLLGAVANGSN  162


>gi|170724756|ref|YP_001758782.1| transposase IS111A/IS1328/IS1533 [Shewanella woodyi ATCC 51908]
 gi|170726637|ref|YP_001760663.1| transposase IS111A/IS1328/IS1533 [Shewanella woodyi ATCC 51908]
 gi|170727829|ref|YP_001761855.1| transposase IS111A/IS1328/IS1533 [Shewanella woodyi ATCC 51908]
 gi|169810103|gb|ACA84687.1| transposase IS111A/IS1328/IS1533 [Shewanella woodyi ATCC 51908]
 gi|169811984|gb|ACA86568.1| transposase IS111A/IS1328/IS1533 [Shewanella woodyi ATCC 51908]
 gi|169813176|gb|ACA87760.1| transposase IS111A/IS1328/IS1533 [Shewanella woodyi ATCC 51908]
Length=318

 Score = 37.4 bits (85),  Expect = 0.78, Method: Compositional matrix adjust.
 Identities = 27/111 (25%), Positives = 47/111 (43%), Gaps = 5/111 (4%)

Query  37   IRFSVEPTLAGLRTLTDKLSGYDDIDATVEPTSMTWLPLTIAVENAGDTMHMAGARHCAR  96
            I F+V+    G++   + +  Y      +E T    +P  +A   A     +A   H  R
Sbjct  29   IFFTVKNDEKGIKDAVNSIKQYTPKRIVIEATGRLEMPFIMACAEANLPFVIANPIHIKR  88

Query  97   LRGAIVGKSKSDVIDAEVLTRASEVFD-----LTPLTLPTPAQLALRRSVI  142
              GAI  ++K+D +DA+++    E        L P  +   + L  RR+ I
Sbjct  89   FAGAIGQRAKTDKLDAKLIAHYGEAIKPKLSTLKPSIMQAMSDLVSRRNQI  139



Lambda     K      H
   0.321    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129924364284


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40