BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3351c

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|289555631|ref|ZP_06444841.1|  conserved hypothetical protein [...   538    4e-151
gi|15610487|ref|NP_217868.1|  hypothetical protein Rv3351c [Mycob...   537    5e-151
gi|340628333|ref|YP_004746785.1|  hypothetical protein MCAN_33771...   536    1e-150
gi|289576084|ref|ZP_06456311.1|  oxidoreductase [Mycobacterium tu...   534    4e-150
gi|323717973|gb|EGB27160.1|  hypothetical protein TMMG_04019 [Myc...   471    5e-131
gi|240169077|ref|ZP_04747736.1|  oxidoreductase [Mycobacterium ka...   281    8e-74 
gi|289576083|ref|ZP_06456310.1|  conserved hypothetical protein [...   279    3e-73 
gi|183981201|ref|YP_001849492.1|  oxidoreductase [Mycobacterium m...   270    1e-70 
gi|118617104|ref|YP_905436.1|  oxidoreductase [Mycobacterium ulce...   262    4e-68 
gi|296168838|ref|ZP_06850511.1|  MitR protein [Mycobacterium para...   242    4e-62 
gi|342861566|ref|ZP_08718213.1|  oxidoreductase [Mycobacterium co...   221    1e-55 
gi|183980145|ref|YP_001848436.1|  oxidoreductase [Mycobacterium m...   214    1e-53 
gi|296165021|ref|ZP_06847576.1|  MitR protein [Mycobacterium para...   210    2e-52 
gi|15607205|ref|NP_214577.1|  oxidoreductase [Mycobacterium tuber...   208    7e-52 
gi|254548993|ref|ZP_05139440.1|  oxidoreductase [Mycobacterium tu...   208    8e-52 
gi|306805844|ref|ZP_07442512.1|  oxidoreductase [Mycobacterium tu...   207    9e-52 
gi|289441429|ref|ZP_06431173.1|  oxidoreductase [Mycobacterium tu...   207    1e-51 
gi|289572640|ref|ZP_06452867.1|  oxidoreductase [Mycobacterium tu...   207    1e-51 
gi|340625096|ref|YP_004743548.1|  putative oxidoreductase [Mycoba...   204    8e-51 
gi|254818567|ref|ZP_05223568.1|  FAD binding domain-containing pr...   201    1e-49 
gi|289760164|ref|ZP_06519542.1|  LOW QUALITY PROTEIN: oxidoreduct...   196    4e-48 
gi|289747832|ref|ZP_06507210.1|  oxidoreductase [Mycobacterium tu...   195    5e-48 
gi|342860205|ref|ZP_08716857.1|  FAD binding domain-containing pr...   195    5e-48 
gi|41406179|ref|NP_959015.1|  hypothetical protein MAP0081 [Mycob...   192    4e-47 
gi|118462287|ref|YP_879387.1|  FAD binding domain-containing prot...   192    4e-47 
gi|336459403|gb|EGO38345.1|  FAD/FMN-dependent dehydrogenase [Myc...   189    3e-46 
gi|240172438|ref|ZP_04751097.1|  putative oxidoreductase [Mycobac...   189    3e-46 
gi|284032270|ref|YP_003382201.1|  FAD linked oxidase domain-conta...   120    2e-25 
gi|271962989|ref|YP_003337185.1|  histidine kinase [Streptosporan...  65.9    6e-09 
gi|340528688|gb|AEK43893.1|  hypothetical protein RAM_27080 [Amyc...  62.8    5e-08 
gi|300787189|ref|YP_003767480.1|  hypothetical protein AMED_5316 ...  62.8    5e-08 
gi|312200911|ref|YP_004020972.1|  FAD linked oxidase domain prote...  62.4    6e-08 
gi|302524094|ref|ZP_07276436.1|  predicted protein [Streptomyces ...  62.0    1e-07 
gi|290959341|ref|YP_003490523.1|  berberine bridge protein [Strep...  58.5    1e-06 
gi|311900287|dbj|BAJ32695.1|  putative oxidoreductase [Kitasatosp...  58.2    1e-06 
gi|345008298|ref|YP_004810652.1|  FAD linked oxidase domain-conta...  57.4    2e-06 
gi|229083655|ref|ZP_04215980.1|  FAD linked oxidase domain protei...  57.0    3e-06 
gi|154685342|ref|YP_001420503.1|  YgaK [Bacillus amyloliquefacien...  56.2    4e-06 
gi|290955746|ref|YP_003486928.1|  berberine bridge protein [Strep...  55.1    1e-05 
gi|337763465|emb|CCB72173.1|  Lipoprotein [Streptomyces cattleya ...  55.1    1e-05 
gi|297158512|gb|ADI08224.1|  lipoprotein [Streptomyces bingchengg...  55.1    1e-05 
gi|297193507|ref|ZP_06910905.1|  lipoprotein [Streptomyces pristi...  55.1    1e-05 
gi|150018781|ref|YP_001311035.1|  FAD linked oxidase domain-conta...  54.3    2e-05 
gi|228906137|ref|ZP_04070026.1|  FAD linked oxidase domain protei...  53.9    2e-05 
gi|293374554|ref|ZP_06620874.1|  FAD binding domain protein [Turi...  53.9    3e-05 
gi|126653149|ref|ZP_01725273.1|  probable reticuline oxidase [Bac...  53.9    3e-05 
gi|325843483|ref|ZP_08167993.1|  FAD binding domain protein [Turi...  53.5    3e-05 
gi|86738766|ref|YP_479166.1|  twin-arginine translocation pathway...  53.5    3e-05 
gi|302387530|ref|YP_003823352.1|  FAD linked oxidase domain prote...  53.5    3e-05 
gi|315647202|ref|ZP_07900315.1|  FAD linked oxidase domain protei...  53.5    3e-05 


>gi|289555631|ref|ZP_06444841.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289440263|gb|EFD22756.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
Length=288

 Score =  538 bits (1385),  Expect = 4e-151, Method: Compositional matrix adjust.
 Identities = 264/264 (100%), Positives = 264/264 (100%), Gaps = 0/264 (0%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV
Sbjct  25   VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  84

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
            IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV
Sbjct  85   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  144

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
            NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP
Sbjct  145  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  204

Query  181  DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN  240
            DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN
Sbjct  205  DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN  264

Query  241  VAVTQEQAGVMDLPALPVRRTPRR  264
            VAVTQEQAGVMDLPALPVRRTPRR
Sbjct  265  VAVTQEQAGVMDLPALPVRRTPRR  288


>gi|15610487|ref|NP_217868.1| hypothetical protein Rv3351c [Mycobacterium tuberculosis H37Rv]
 gi|15842947|ref|NP_337984.1| hypothetical protein MT3459 [Mycobacterium tuberculosis CDC1551]
 gi|31794534|ref|NP_857027.1| hypothetical protein Mb3386c [Mycobacterium bovis AF2122/97]
 56 more sequence titles
 Length=264

 Score =  537 bits (1384),  Expect = 5e-151, Method: Compositional matrix adjust.
 Identities = 263/264 (99%), Positives = 264/264 (100%), Gaps = 0/264 (0%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV
Sbjct  1    MLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
            IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV
Sbjct  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
            NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP
Sbjct  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180

Query  181  DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN  240
            DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN
Sbjct  181  DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN  240

Query  241  VAVTQEQAGVMDLPALPVRRTPRR  264
            VAVTQEQAGVMDLPALPVRRTPRR
Sbjct  241  VAVTQEQAGVMDLPALPVRRTPRR  264


>gi|340628333|ref|YP_004746785.1| hypothetical protein MCAN_33771 [Mycobacterium canettii CIPT 
140010059]
 gi|340006523|emb|CCC45708.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=264

 Score =  536 bits (1380),  Expect = 1e-150, Method: Compositional matrix adjust.
 Identities = 262/264 (99%), Positives = 264/264 (100%), Gaps = 0/264 (0%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LASCPARSGAAVADAIK+AVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV
Sbjct  1    MLASCPARSGAAVADAIKAAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
            IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV
Sbjct  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
            NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP
Sbjct  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180

Query  181  DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN  240
            DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN
Sbjct  181  DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN  240

Query  241  VAVTQEQAGVMDLPALPVRRTPRR  264
            VAVTQEQAGVMDLPALPVRRTPRR
Sbjct  241  VAVTQEQAGVMDLPALPVRRTPRR  264


>gi|289576084|ref|ZP_06456311.1| oxidoreductase [Mycobacterium tuberculosis K85]
 gi|339633359|ref|YP_004725001.1| hypothetical protein MAF_33660 [Mycobacterium africanum GM041182]
 gi|289540515|gb|EFD45093.1| oxidoreductase [Mycobacterium tuberculosis K85]
 gi|339332715|emb|CCC28435.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=264

 Score =  534 bits (1376),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 262/264 (99%), Positives = 263/264 (99%), Gaps = 0/264 (0%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV
Sbjct  1    MLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
            IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV
Sbjct  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
            NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP
Sbjct  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180

Query  181  DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN  240
            DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN
Sbjct  181  DRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVN  240

Query  241  VAVTQEQAGVMDLPALPVRRTPRR  264
            VAVTQEQAGVMDLPALP RRTPRR
Sbjct  241  VAVTQEQAGVMDLPALPGRRTPRR  264


>gi|323717973|gb|EGB27160.1| hypothetical protein TMMG_04019 [Mycobacterium tuberculosis CDC1551A]
Length=229

 Score =  471 bits (1212),  Expect = 5e-131, Method: Compositional matrix adjust.
 Identities = 229/229 (100%), Positives = 229/229 (100%), Gaps = 0/229 (0%)

Query  36   MDLVRYLAGGHTTYPPEGFVAGSDVIGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGG  95
            MDLVRYLAGGHTTYPPEGFVAGSDVIGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGG
Sbjct  1    MDLVRYLAGGHTTYPPEGFVAGSDVIGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGG  60

Query  96   AVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLE  155
            AVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLE
Sbjct  61   AVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLE  120

Query  156  ANAAASQYFGANLSRLTTVRRKYDPDRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIR  215
            ANAAASQYFGANLSRLTTVRRKYDPDRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIR
Sbjct  121  ANAAASQYFGANLSRLTTVRRKYDPDRIMYSGLDFSTRQVAERLLPALGFRVRFGVLVIR  180

Query  216  CALCTDTVKRLGTLPNLTWSRLKVNVAVTQEQAGVMDLPALPVRRTPRR  264
            CALCTDTVKRLGTLPNLTWSRLKVNVAVTQEQAGVMDLPALPVRRTPRR
Sbjct  181  CALCTDTVKRLGTLPNLTWSRLKVNVAVTQEQAGVMDLPALPVRRTPRR  229


>gi|240169077|ref|ZP_04747736.1| oxidoreductase [Mycobacterium kansasii ATCC 12478]
Length=477

 Score =  281 bits (718),  Expect = 8e-74, Method: Compositional matrix adjust.
 Identities = 135/190 (72%), Positives = 155/190 (82%), Gaps = 0/190 (0%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            VLA+CPA SG AVA+AIKSAVGVQP+GVEHKTL  MDLV YLAGG  T  P  FVAGSDV
Sbjct  288  VLATCPAGSGPAVANAIKSAVGVQPTGVEHKTLSHMDLVMYLAGGSATSSPRSFVAGSDV  347

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
            IGT N AAAQ+IVAA+G WPPA+GRAS ++D+L GAVGD+DP GSAFPW RQSAV QWYV
Sbjct  348  IGTMNSAAAQSIVAALGKWPPASGRASVIVDTLSGAVGDVDPSGSAFPWRRQSAVAQWYV  407

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             TP  GQVA ANKW+  AH AVQ FSVG YVNYLE N A ++YFG NL+RLT +R++YDP
Sbjct  408  ETPGSGQVAAANKWIGAAHQAVQQFSVGAYVNYLEPNTAPARYFGPNLARLTAIRQRYDP  467

Query  181  DRIMYSGLDF  190
             ++MYSG+ F
Sbjct  468  GQLMYSGIVF  477


>gi|289576083|ref|ZP_06456310.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289540514|gb|EFD45092.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=137

 Score =  279 bits (714),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 135/137 (99%), Positives = 136/137 (99%), Gaps = 0/137 (0%)

Query  128  VATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDPDRIMYSG  187
            +ATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDPDRIMYSG
Sbjct  1    MATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDPDRIMYSG  60

Query  188  LDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVNVAVTQEQ  247
            LDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVNVAVTQEQ
Sbjct  61   LDFSTRQVAERLLPALGFRVRFGVLVIRCALCTDTVKRLGTLPNLTWSRLKVNVAVTQEQ  120

Query  248  AGVMDLPALPVRRTPRR  264
            AGVMDLPALP RRTPRR
Sbjct  121  AGVMDLPALPGRRTPRR  137


>gi|183981201|ref|YP_001849492.1| oxidoreductase [Mycobacterium marinum M]
 gi|183174527|gb|ACC39637.1| oxidoreductase [Mycobacterium marinum M]
Length=480

 Score =  270 bits (691),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 136/190 (72%), Positives = 158/190 (84%), Gaps = 0/190 (0%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            VLA+CPA +G  VADAIKSAVG QP+G+E KT   M+LV+YLAGG +   P GFVAGSDV
Sbjct  291  VLATCPAGAGRGVADAIKSAVGAQPTGIETKTFNHMELVKYLAGGSSASSPRGFVAGSDV  350

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
            IGT N AAAQAIVAA+G WPPA+GRASAL+D+L GAVGD+DP  +AFPW RQSAVVQWYV
Sbjct  351  IGTVNSAAAQAIVAAVGKWPPASGRASALVDTLTGAVGDIDPTATAFPWRRQSAVVQWYV  410

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             TPS GQ A A KW++ AH AVQ FSVGGYVNYLEAN A S+YFG+NLSRLT +R++YDP
Sbjct  411  ETPSSGQTAAATKWINSAHQAVQQFSVGGYVNYLEANTAPSRYFGSNLSRLTQIRQRYDP  470

Query  181  DRIMYSGLDF  190
             R+MYSGL+F
Sbjct  471  SRLMYSGLNF  480


>gi|118617104|ref|YP_905436.1| oxidoreductase [Mycobacterium ulcerans Agy99]
 gi|118569214|gb|ABL03965.1| oxidoreductase [Mycobacterium ulcerans Agy99]
Length=480

 Score =  262 bits (670),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 134/190 (71%), Positives = 156/190 (83%), Gaps = 0/190 (0%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            VLA+CPA +G  VADAIKSAVG QP+G+E KT   M+LV+YLAGG +   P GFVAGSDV
Sbjct  291  VLATCPAGAGRGVADAIKSAVGAQPTGIETKTFNHMELVKYLAGGSSASSPRGFVAGSDV  350

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
            IGT N AAAQAIVAA+G  PPA+G ASAL+D+L GAVGD+DP  +AFPW RQSAVVQWYV
Sbjct  351  IGTVNSAAAQAIVAAVGKSPPASGWASALVDTLTGAVGDIDPTATAFPWRRQSAVVQWYV  410

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             TPS GQ A A KW++ AH AVQ FSVGGYVNYLEAN A S+YFG+NLSRLT +R++YDP
Sbjct  411  ETPSSGQTAAATKWINSAHQAVQQFSVGGYVNYLEANTALSRYFGSNLSRLTQIRQRYDP  470

Query  181  DRIMYSGLDF  190
             R+MYSGL+F
Sbjct  471  SRLMYSGLNF  480


>gi|296168838|ref|ZP_06850511.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896497|gb|EFG76146.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=488

 Score =  242 bits (618),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 128/190 (68%), Positives = 149/190 (79%), Gaps = 1/190 (0%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            VLA+CPA SG+AVADAIKSAVGV PS V +KT+ R DLV +LAGG +T P   FVAGSDV
Sbjct  300  VLATCPAGSGSAVADAIKSAVGVAPSSVSNKTMSRSDLVMFLAGGTSTPPARAFVAGSDV  359

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
            IG  + AAA AI  AIG WP  AG+AS L+D LGGAV D+    +AFPW  Q+AV+QWYV
Sbjct  360  IGPVDSAAAHAIATAIGQWPSGAGQASVLVDPLGGAVADVAAGDTAFPWRNQAAVLQWYV  419

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
              PS  QV+ AN WLS AH AVQ FSVGGYVNYLEAN A ++YFG+NLSRLTTVR+KYDP
Sbjct  420  E-PSSSQVSAANTWLSSAHQAVQQFSVGGYVNYLEANGAPARYFGSNLSRLTTVRQKYDP  478

Query  181  DRIMYSGLDF  190
            +R+M+SGLDF
Sbjct  479  NRVMFSGLDF  488


>gi|342861566|ref|ZP_08718213.1| oxidoreductase [Mycobacterium colombiense CECT 3035]
 gi|342131055|gb|EGT84344.1| oxidoreductase [Mycobacterium colombiense CECT 3035]
Length=456

 Score =  221 bits (562),  Expect = 1e-55, Method: Compositional matrix adjust.
 Identities = 121/191 (64%), Positives = 140/191 (74%), Gaps = 2/191 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            VLA+ PA +G+AV DA+KSAVG+ PS V +KTL  MDLV YLAGG  T P  GFVAGSDV
Sbjct  267  VLATAPAGTGSAVVDALKSAVGLAPSAVTNKTLSHMDLVTYLAGGSGTSPARGFVAGSDV  326

Query  61   IGTTNPAAAQAIVAAIGTWPPA-AGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWY  119
            IG    AAA AI  A G WP + AG+AS LID LGGAV D+    +AFPW  QSAVVQWY
Sbjct  327  IGPMTSAAAHAIATAAGQWPASGAGQASVLIDPLGGAVADVAAGDTAFPWRNQSAVVQWY  386

Query  120  VNTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYD  179
            V  P+  QV  A  W+  AH AVQ FSVGGYVNYLE N   S+Y+G+NL RLTTVR+KYD
Sbjct  387  VE-PAANQVGAATTWVGSAHQAVQQFSVGGYVNYLEPNPTPSRYYGSNLPRLTTVRQKYD  445

Query  180  PDRIMYSGLDF  190
            P+R+M+SGLDF
Sbjct  446  PNRMMFSGLDF  456


>gi|183980145|ref|YP_001848436.1| oxidoreductase [Mycobacterium marinum M]
 gi|183173471|gb|ACC38581.1| oxidoreductase [Mycobacterium marinum M]
Length=479

 Score =  214 bits (544),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 109/190 (58%), Positives = 136/190 (72%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CP  SG +VA AI SAVGVQP G +H T   +DLVRYLA G+    P G+V GSDV
Sbjct  292  ILATCPVGSGGSVASAITSAVGVQPIGTDHHTFNYLDLVRYLAVGNLNPAPLGYVGGSDV  351

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
            + T N  AA+ I +AI  +P  AGRA A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  352  LPTINAGAAKGIASAIDAFPRGAGRALAIMHALDGALATVAPGATAFPWRRQSALVQWYV  411

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             TP  G  A A+ WL+ AH AVQ +S GGYVNYLEAN  AS+YFG NLSRL+ VR+KYDP
Sbjct  412  ETP--GSPAAASGWLNTAHQAVQPYSAGGYVNYLEANQPASRYFGPNLSRLSAVRQKYDP  469

Query  181  DRIMYSGLDF  190
             R+M+SGL+ 
Sbjct  470  GRVMFSGLNL  479


>gi|296165021|ref|ZP_06847576.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899669|gb|EFG79120.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=477

 Score =  210 bits (534),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 105/190 (56%), Positives = 133/190 (70%), Gaps = 3/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            ++A+CP  SG++V  AI  AVGVQP+G E+ T   +DLV YLA G+    P G+V GSDV
Sbjct  291  IMATCPVGSGSSVGSAITKAVGVQPTGTENHTFNYLDLVNYLAVGNLNPSPLGYVGGSDV  350

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
            +   N A AQ I  A+  +P  AGR  A++ +L GA+ D+ P  +AFPW RQ A+VQWYV
Sbjct  351  LPVVNAATAQGIAKAVDAFPRGAGRMLAIMHALDGALADVAPGATAFPWRRQYALVQWYV  410

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G VA A  WL+ AH AVQ +SVGGYVNY+EAN  AS+YF +NLSRLT VR+KYDP
Sbjct  411  ET---GDVAAATNWLNTAHQAVQPYSVGGYVNYIEANQPASRYFSSNLSRLTAVRQKYDP  467

Query  181  DRIMYSGLDF  190
             RIM+SGL+F
Sbjct  468  SRIMFSGLNF  477


>gi|15607205|ref|NP_214577.1| oxidoreductase [Mycobacterium tuberculosis H37Rv]
 gi|15839441|ref|NP_334478.1| mitR protein [Mycobacterium tuberculosis CDC1551]
 gi|31791240|ref|NP_853733.1| oxidoreductase [Mycobacterium bovis AF2122/97]
 49 more sequence titles
 Length=479

 Score =  208 bits (529),  Expect = 7e-52, Method: Compositional matrix adjust.
 Identities = 104/190 (55%), Positives = 133/190 (70%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG +VA AI SAVG QP+G E+ T   +DLVRYLA G+    P G+V GSDV
Sbjct  292  ILATCPAGSGGSVAAAIVSAVGTQPTGTENHTFNYLDLVRYLAVGNLNPSPLGYVGGSDV  351

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T  PA AQ I +A+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  352  FTTITPATAQGIASAVDAFPRGAGRMLAIMHALDGALATVSPGATAFPWRRQSALVQWYV  411

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  + A  WL+ AH AV+ +SVGGYVNYLE N   ++YFG NLSRL+ VR+KYDP
Sbjct  412  ET--SGSPSEATSWLNTAHQAVRAYSVGGYVNYLEVNQPPARYFGPNLSRLSAVRQKYDP  469

Query  181  DRIMYSGLDF  190
             R+M+SGL+F
Sbjct  470  SRVMFSGLNF  479


>gi|254548993|ref|ZP_05139440.1| oxidoreductase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=434

 Score =  208 bits (529),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 104/190 (55%), Positives = 133/190 (70%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG +VA AI SAVG QP+G E+ T   +DLVRYLA G+    P G+V GSDV
Sbjct  247  ILATCPAGSGGSVAAAIVSAVGTQPTGTENHTFNYLDLVRYLAVGNLNPSPLGYVGGSDV  306

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T  PA AQ I +A+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  307  FTTITPATAQGIASAVDAFPRGAGRMLAIMHALDGALATVSPGATAFPWRRQSALVQWYV  366

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  + A  WL+ AH AV+ +SVGGYVNYLE N   ++YFG NLSRL+ VR+KYDP
Sbjct  367  ET--SGSPSEATSWLNTAHQAVRAYSVGGYVNYLEVNQPPARYFGPNLSRLSAVRQKYDP  424

Query  181  DRIMYSGLDF  190
             R+M+SGL+F
Sbjct  425  SRVMFSGLNF  434


>gi|306805844|ref|ZP_07442512.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
 gi|306970241|ref|ZP_07482902.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
 gi|308347734|gb|EFP36585.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
 gi|308352358|gb|EFP41209.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
Length=479

 Score =  207 bits (528),  Expect = 9e-52, Method: Compositional matrix adjust.
 Identities = 104/190 (55%), Positives = 133/190 (70%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG +VA AI SAVG QP+G E+ T   +DLVRYLA G+    P G+V GSDV
Sbjct  292  ILATCPAGSGGSVAAAIVSAVGTQPTGTENHTFNYLDLVRYLAVGNLNPSPLGYVGGSDV  351

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T  PA AQ I +A+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  352  FTTITPATAQGIASAVDAFPRGAGRMLAIMHALDGALATVSPGATAFPWRRQSALVQWYV  411

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  + A  WL+ AH AV+ +SVGGYVNYLE N   ++YFG NLSRL+ VR+KYDP
Sbjct  412  ET--SGSPSEATSWLNTAHQAVRAYSVGGYVNYLEVNQPPARYFGPNLSRLSAVRQKYDP  469

Query  181  DRIMYSGLDF  190
             R+M+SGL+F
Sbjct  470  SRVMFSGLNF  479


>gi|289441429|ref|ZP_06431173.1| oxidoreductase [Mycobacterium tuberculosis T46]
 gi|289567950|ref|ZP_06448177.1| oxidoreductase [Mycobacterium tuberculosis T17]
 gi|289748527|ref|ZP_06507905.1| oxidoreductase [Mycobacterium tuberculosis T92]
 gi|289756123|ref|ZP_06515501.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
 gi|289414348|gb|EFD11588.1| oxidoreductase [Mycobacterium tuberculosis T46]
 gi|289541703|gb|EFD45352.1| oxidoreductase [Mycobacterium tuberculosis T17]
 gi|289689114|gb|EFD56543.1| oxidoreductase [Mycobacterium tuberculosis T92]
 gi|289696710|gb|EFD64139.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
Length=479

 Score =  207 bits (527),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 104/190 (55%), Positives = 132/190 (70%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG +VA AI SAVG QP+G E+ T   +DLVRYLA G+    P G+V GSDV
Sbjct  292  ILATCPAGSGGSVAAAIVSAVGTQPTGTENHTFNYLDLVRYLAVGNLNPSPLGYVGGSDV  351

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T  PA AQ I +A+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  352  FTTITPATAQGIASAVDAFPRGAGRMLAIMHALDGALATVSPGATAFPWRRQSALVQWYV  411

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G    A  WL+ AH AV+ +SVGGYVNYLE N   ++YFG NLSRL+ VR+KYDP
Sbjct  412  ET--SGSPPEATSWLNTAHQAVRAYSVGGYVNYLEVNQPPARYFGPNLSRLSAVRQKYDP  469

Query  181  DRIMYSGLDF  190
             R+M+SGL+F
Sbjct  470  SRVMFSGLNF  479


>gi|289572640|ref|ZP_06452867.1| oxidoreductase [Mycobacterium tuberculosis K85]
 gi|289537071|gb|EFD41649.1| oxidoreductase [Mycobacterium tuberculosis K85]
Length=442

 Score =  207 bits (527),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 104/190 (55%), Positives = 133/190 (70%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG +VA AI SAVG QP+G E+ T   +DLVRYLA G+    P G+V GSDV
Sbjct  255  ILATCPAGSGGSVAAAIVSAVGTQPTGTENHTFNYLDLVRYLAVGNLNPSPLGYVGGSDV  314

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T  PA AQ I +A+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  315  FTTITPATAQGIASAVDAFPRGAGRMLAIMHALDGALATVSPGATAFPWRRQSALVQWYV  374

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  + A  WL+ AH AV+ +SVGGYVNYLE N   ++YFG NLSRL+ VR+KYDP
Sbjct  375  ET--SGSPSEATSWLNTAHQAVRAYSVGGYVNYLEVNQPPARYFGPNLSRLSAVRQKYDP  432

Query  181  DRIMYSGLDF  190
             R+M+SGL+F
Sbjct  433  SRVMFSGLNF  442


>gi|340625096|ref|YP_004743548.1| putative oxidoreductase [Mycobacterium canettii CIPT 140010059]
 gi|340003286|emb|CCC42403.1| putative oxidoreductase [Mycobacterium canettii CIPT 140010059]
Length=479

 Score =  204 bits (520),  Expect = 8e-51, Method: Compositional matrix adjust.
 Identities = 104/190 (55%), Positives = 132/190 (70%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG +VA AI SAVG QP+G E+ T   +DLVRYLA G+    P G+V GSDV
Sbjct  292  ILATCPAGSGGSVAAAIVSAVGTQPTGTENHTFNYLDLVRYLAVGNLNPSPLGYVGGSDV  351

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
                 PAAAQ I +A+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  352  FTAITPAAAQGIASAVDAFPRGAGRMLAIMHALDGALAAVAPGATAFPWRRQSALVQWYV  411

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G    A  WL+ AH AV+ +SVGGYVNYLE N   ++YFG NLSRL+ VR+KYDP
Sbjct  412  ET--SGPPLEATSWLNTAHQAVRAYSVGGYVNYLEVNQPPARYFGPNLSRLSAVRQKYDP  469

Query  181  DRIMYSGLDF  190
             R+M+SGL+F
Sbjct  470  SRVMFSGLNF  479


>gi|254818567|ref|ZP_05223568.1| FAD binding domain-containing protein [Mycobacterium intracellulare 
ATCC 13950]
Length=477

 Score =  201 bits (510),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 101/190 (54%), Positives = 129/190 (68%), Gaps = 3/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            ++A+ PA SG + A AI  AVG+QPSG E+ T   MDLV YLA G+    P G+V GSDV
Sbjct  291  IMATSPAGSGNSTAAAITQAVGMQPSGTENHTFNYMDLVNYLAVGNLNPSPLGYVGGSDV  350

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T N   AQ I AA+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  351  FATVNAGVAQGIAAAVNAFPRGAGRMLAIMHALDGALATVAPGATAFPWRRQSALVQWYV  410

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  A A  WL  AH AVQ +SVGGYVNY+EA  + ++YFG NLSRL+ VR+KYDP
Sbjct  411  ET---GDPAAATNWLGTAHQAVQQYSVGGYVNYIEAGQSPARYFGPNLSRLSAVRQKYDP  467

Query  181  DRIMYSGLDF  190
             R+M+SGL++
Sbjct  468  GRVMFSGLNY  477


>gi|289760164|ref|ZP_06519542.1| LOW QUALITY PROTEIN: oxidoreductase [Mycobacterium tuberculosis 
T85]
 gi|289715728|gb|EFD79740.1| LOW QUALITY PROTEIN: oxidoreductase [Mycobacterium tuberculosis 
T85]
Length=480

 Score =  196 bits (497),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 99/183 (55%), Positives = 126/183 (69%), Gaps = 2/183 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG +VA AI SAVG QP+G E+ T   +DLVRYLA G+    P G+V GSDV
Sbjct  292  ILATCPAGSGGSVAAAIVSAVGTQPTGTENHTFNYLDLVRYLAVGNLNPSPLGYVGGSDV  351

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T  PA AQ I +A+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  352  FTTITPATAQGIASAVDAFPRGAGRMLAIMHALDGALATVSPGATAFPWRRQSALVQWYV  411

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  + A  WL+ AH AV+ +SVGGYVNYLE N   ++YFG NLSRL+ VR+KYDP
Sbjct  412  ET--SGSPSEATSWLNTAHQAVRAYSVGGYVNYLEVNQPPARYFGPNLSRLSAVRQKYDP  469

Query  181  DRI  183
             R+
Sbjct  470  SRV  472


>gi|289747832|ref|ZP_06507210.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
 gi|289688360|gb|EFD55848.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
 gi|326905823|gb|EGE52756.1| hypothetical protein TBPG_03789 [Mycobacterium tuberculosis W-148]
 gi|339293135|gb|AEJ45246.1| oxidoreductase [Mycobacterium tuberculosis CCDC5079]
 gi|339296784|gb|AEJ48894.1| oxidoreductase [Mycobacterium tuberculosis CCDC5180]
Length=486

 Score =  195 bits (496),  Expect = 5e-48, Method: Compositional matrix adjust.
 Identities = 99/183 (55%), Positives = 126/183 (69%), Gaps = 2/183 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG +VA AI SAVG QP+G E+ T   +DLVRYLA G+    P G+V GSDV
Sbjct  292  ILATCPAGSGGSVAAAIVSAVGTQPTGTENHTFNYLDLVRYLAVGNLNPSPLGYVGGSDV  351

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T  PA AQ I +A+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  352  FTTITPATAQGIASAVDAFPRGAGRMLAIMHALDGALATVSPGATAFPWRRQSALVQWYV  411

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  + A  WL+ AH AV+ +SVGGYVNYLE N   ++YFG NLSRL+ VR+KYDP
Sbjct  412  ET--SGSPSEATSWLNTAHQAVRAYSVGGYVNYLEVNQPPARYFGPNLSRLSAVRQKYDP  469

Query  181  DRI  183
             R+
Sbjct  470  SRV  472


>gi|342860205|ref|ZP_08716857.1| FAD binding domain-containing protein [Mycobacterium colombiense 
CECT 3035]
 gi|342132583|gb|EGT85812.1| FAD binding domain-containing protein [Mycobacterium colombiense 
CECT 3035]
Length=477

 Score =  195 bits (496),  Expect = 5e-48, Method: Compositional matrix adjust.
 Identities = 102/190 (54%), Positives = 130/190 (69%), Gaps = 3/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG + A AI  AVG+QPS  E+ T   MDLV YLA G+    P G+V GSDV
Sbjct  291  ILATCPAGSGNSAAAAITQAVGLQPSSTENHTFNYMDLVNYLAVGNLNPSPLGYVGGSDV  350

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T N   AQ I AA+  +P  AGR  A++ ++ GA+  + P  +AFPW RQSA+VQWYV
Sbjct  351  FATVNAGVAQGIAAAVNAFPRGAGRMLAIMHAMDGALATVAPGATAFPWRRQSALVQWYV  410

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  A A  WL+ AH AVQ +SVGGYVNY+EA+   S+YFG NLSRL+ VR+KYDP
Sbjct  411  ET---GDPAAATSWLNTAHQAVQQYSVGGYVNYIEADQPPSRYFGPNLSRLSAVRQKYDP  467

Query  181  DRIMYSGLDF  190
             R+M+SGL++
Sbjct  468  GRVMFSGLNY  477


>gi|41406179|ref|NP_959015.1| hypothetical protein MAP0081 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41394527|gb|AAS02398.1| hypothetical protein MAP_0081 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=438

 Score =  192 bits (489),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 107/190 (57%), Positives = 133/190 (70%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG + A AI  AVG+QPSGVE  T   MDLV YLA G+    P G+V GSDV
Sbjct  251  ILATCPAGSGNSAAAAITQAVGIQPSGVETHTFNYMDLVNYLAVGNLNPQPLGYVGGSDV  310

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T N A AQ I AA+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  311  FPTVNAAVAQGIAAAVNAFPRNAGRMLAIMHALDGALATVAPAATAFPWRRQSALVQWYV  370

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  A A  WL+ AH AVQ +SVGGYVNYLEAN + ++YFG NLSRL+ VR+KYDP
Sbjct  371  ET--SGDPAAATNWLASAHQAVQQYSVGGYVNYLEANQSPARYFGPNLSRLSAVRQKYDP  428

Query  181  DRIMYSGLDF  190
             R+M+SGL++
Sbjct  429  GRVMFSGLNY  438


>gi|118462287|ref|YP_879387.1| FAD binding domain-containing protein [Mycobacterium avium 104]
 gi|254773134|ref|ZP_05214650.1| FAD binding domain-containing protein [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|118163574|gb|ABK64471.1| FAD binding domain protein [Mycobacterium avium 104]
Length=478

 Score =  192 bits (488),  Expect = 4e-47, Method: Compositional matrix adjust.
 Identities = 107/190 (57%), Positives = 133/190 (70%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG + A AI  AVG+QPSGVE  T   MDLV YLA G+    P G+V GSDV
Sbjct  291  ILATCPAGSGNSAAAAITQAVGIQPSGVETHTFNYMDLVNYLAVGNLNPQPLGYVGGSDV  350

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T N A AQ I AA+  +P  AGR  A++ +L GA+  + P  +AFPW RQSA+VQWYV
Sbjct  351  FPTVNAAVAQGIAAAVNAFPRNAGRMLAIMHALDGALATVAPAATAFPWRRQSALVQWYV  410

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  A A  WL+ AH AVQ +SVGGYVNYLEAN + ++YFG NLSRL+ VR+KYDP
Sbjct  411  ET--SGDPAAATNWLASAHQAVQQYSVGGYVNYLEANQSPARYFGPNLSRLSAVRQKYDP  468

Query  181  DRIMYSGLDF  190
             R+M+SGL++
Sbjct  469  GRVMFSGLNY  478


>gi|336459403|gb|EGO38345.1| FAD/FMN-dependent dehydrogenase [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=478

 Score =  189 bits (481),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 106/190 (56%), Positives = 132/190 (70%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG + A AI  AVG+QPSGVE  T   MDLV YLA G+    P G+V GSDV
Sbjct  291  ILATCPAGSGNSAAAAITQAVGIQPSGVETHTFNYMDLVNYLAVGNLNPQPLGYVGGSDV  350

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T N A AQ I AA+  +P  AGR  A++ +L GA+  + P  +AFPW  QSA+VQWYV
Sbjct  351  FPTVNAAVAQGIAAAVNAFPRNAGRMLAIMHALDGALATVAPAATAFPWRLQSALVQWYV  410

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
             T   G  A A  WL+ AH AVQ +SVGGYVNYLEAN + ++YFG NLSRL+ VR+KYDP
Sbjct  411  ET--SGDPAAATNWLASAHQAVQQYSVGGYVNYLEANQSPARYFGPNLSRLSAVRQKYDP  468

Query  181  DRIMYSGLDF  190
             R+M+SGL++
Sbjct  469  GRVMFSGLNY  478


>gi|240172438|ref|ZP_04751097.1| putative oxidoreductase [Mycobacterium kansasii ATCC 12478]
Length=470

 Score =  189 bits (481),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 100/190 (53%), Positives = 130/190 (69%), Gaps = 2/190 (1%)

Query  1    VLASCPARSGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDV  60
            +LA+CPA SG AVA+AI SAVG QP+G E+ T   +DLVRYLA  +    P G+V GSDV
Sbjct  283  ILATCPAGSGGAVANAITSAVGAQPTGTENHTFNYLDLVRYLAVNNLNPSPLGYVGGSDV  342

Query  61   IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYV  120
              T NPA A  I AA+  +P  AGR  A++ +L G +  + P  +AFPW R  A+VQWYV
Sbjct  343  FPTVNPAVAAGIAAAVDAFPRDAGRMLAIMHALDGTLASVAPGATAFPWRRHGALVQWYV  402

Query  121  NTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
               + G  A A  WL+ AH AVQ +SVGGYVNYLEA+   S+YFG NL+RL+ +R+KYDP
Sbjct  403  E--NAGSPAAATGWLNTAHQAVQRYSVGGYVNYLEASQPPSRYFGPNLARLSAIRQKYDP  460

Query  181  DRIMYSGLDF  190
             R+M+SG++ 
Sbjct  461  GRVMFSGMNL  470


>gi|284032270|ref|YP_003382201.1| FAD linked oxidase domain-containing protein [Kribbella flavida 
DSM 17836]
 gi|283811563|gb|ADB33402.1| FAD linked oxidase domain protein [Kribbella flavida DSM 17836]
Length=512

 Score =  120 bits (302),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 77/178 (44%), Positives = 100/178 (57%), Gaps = 9/178 (5%)

Query  9    SGAAVADAIKSAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDVIGTTNPAA  68
            S  + A  ++S VG + S         M+ VRYL GG TT P  G++AGSDV+    P  
Sbjct  327  SATSAAAELESFVGAKGSARTITVKTHMEAVRYLGGG-TTSPRSGWLAGSDVL--RGPMD  383

Query  69   AQAIVAAIGTWPPAAGR---ASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVN---T  122
            A AI   +G    AA     A+A++D LGG   +    GSA+PW     V+QWY      
Sbjct  384  AGAIDGLLGVVKAAARAKLVATAILDPLGGQAANQPAGGSAWPWRSALGVIQWYAELPGQ  443

Query  123  PSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEANAAASQYFGANLSRLTTVRRKYDP  180
            PS  Q+  A  ++SD H AV  FS GGYVNYLEA  A S Y+G++L RL TV++KYDP
Sbjct  444  PSTAQLRAAQGFVSDGHRAVARFSAGGYVNYLEAGRAVSSYYGSSLPRLRTVKQKYDP  501


>gi|271962989|ref|YP_003337185.1| histidine kinase [Streptosporangium roseum DSM 43021]
 gi|270506164|gb|ACZ84442.1| histidine kinase [Streptosporangium roseum DSM 43021]
Length=487

 Score = 65.9 bits (159),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 45/123 (37%), Positives = 65/123 (53%), Gaps = 13/123 (10%)

Query  65   NPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPS  124
            + A A+A+VA +       G  + L+D+LGGAVG + PE +AFP       VQ+Y +   
Sbjct  369  SEAGARALVAEVAR----PGNHTVLLDALGGAVGRVRPEATAFPHRAALYSVQYYAHR--  422

Query  125  DGQVATANKWLSDAHHAVQ-HFSVGGYVNYLEANAAA--SQYFGANLSRLTTVRRKYDPD  181
                A A  W   AH +++ HF    YVNY++A      S Y+GAN  RL  V+  +DP 
Sbjct  423  ----AGAASWARTAHASMRPHFGDHAYVNYVDAELRGWRSAYYGANAERLARVKAAHDPG  478

Query  182  RIM  184
            R+ 
Sbjct  479  RLF  481


>gi|340528688|gb|AEK43893.1| hypothetical protein RAM_27080 [Amycolatopsis mediterranei S699]
Length=474

 Score = 62.8 bits (151),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 42/106 (40%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query  83   AGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQW-YVNTPSDGQVATANKWLSDAHHA  141
            A R   LIDS GGA+  +    +AFP     A  Q+ +  TP DG  A A + L      
Sbjct  351  APRVGTLIDSAGGAIARVGARETAFPHRSALASFQFLHGATPEDGGEAEARRALGAVRDG  410

Query  142  V-QHFSVGGYVNYLEANAA--ASQYFGANLSRLTTVRRKYDPDRIM  184
            +   F   GYVNYL+      A  Y+G NL+RL  V RKYDPD + 
Sbjct  411  LGPEFGATGYVNYLDPEMPDWARAYYGVNLARLRAVARKYDPDGLF  456


>gi|300787189|ref|YP_003767480.1| hypothetical protein AMED_5316 [Amycolatopsis mediterranei U32]
 gi|299796703|gb|ADJ47078.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length=480

 Score = 62.8 bits (151),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 42/106 (40%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query  83   AGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQW-YVNTPSDGQVATANKWLSDAHHA  141
            A R   LIDS GGA+  +    +AFP     A  Q+ +  TP DG  A A + L      
Sbjct  357  APRVGTLIDSAGGAIARVGARETAFPHRSALASFQFLHGATPEDGGEAEARRALGAVRDG  416

Query  142  V-QHFSVGGYVNYLEANAA--ASQYFGANLSRLTTVRRKYDPDRIM  184
            +   F   GYVNYL+      A  Y+G NL+RL  V RKYDPD + 
Sbjct  417  LGPEFGATGYVNYLDPEMPDWARAYYGVNLARLRAVARKYDPDGLF  462


>gi|312200911|ref|YP_004020972.1| FAD linked oxidase domain protein [Frankia sp. EuI1c]
 gi|311232247|gb|ADP85102.1| FAD linked oxidase domain protein [Frankia sp. EuI1c]
Length=533

 Score = 62.4 bits (150),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 39/111 (36%), Positives = 58/111 (53%), Gaps = 6/111 (5%)

Query  80   PPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPSDG---QVATANKWLS  136
            P A      ++DS GGA+  + P  +AF      A VQ++ + P+      V  A+ W+ 
Sbjct  415  PLAKASGGIILDSWGGAISKVSPSETAFVHRDAIASVQYFASYPAGATAENVRAAHGWVR  474

Query  137  DAHHAVQ-HFSVGGYVNYLEANAA--ASQYFGANLSRLTTVRRKYDPDRIM  184
            D   AV  + S   Y NY++ + A  A  Y+GANL RLT ++R YDPD + 
Sbjct  475  DTAAAVAPYVSDQAYQNYIDPDLANWAQAYYGANLPRLTAIKRHYDPDNLF  525


>gi|302524094|ref|ZP_07276436.1| predicted protein [Streptomyces sp. AA4]
 gi|302432989|gb|EFL04805.1| predicted protein [Streptomyces sp. AA4]
Length=487

 Score = 62.0 bits (149),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 58/176 (33%), Positives = 80/176 (46%), Gaps = 27/176 (15%)

Query  19   SAVGVQPSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDVIGTTNPAAAQAIVAAIGT  78
            S   V PS    KTL     + Y +G       + FVA S +I  T+P     I      
Sbjct  323  SGFSVTPSSRTMKTLGYGAAMNYFSGSSER---QTFVASSRII--TDPVDGGKIADL---  374

Query  79   WPPAAGRASA--LIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQ------VAT  130
               A+G      LID LGGAVG + P  +AFP  +  A +Q Y    +  Q      V+T
Sbjct  375  ---ASGHKGMDLLIDGLGGAVGQIAPTATAFPHRKALASIQVYAPATASSQDSARKSVST  431

Query  131  ANKWLSDAHHAVQHFSVGGYVNYLEANAA--ASQYFGANLSRLTTVRRKYDPDRIM  184
                L+DA       + GGYVNY++ +     S Y+G N +RL  V +KYDP+ + 
Sbjct  432  VVAGLADAG------ARGGYVNYIDPDLPDWKSAYYGDNAARLDQVAKKYDPNGVF  481


>gi|290959341|ref|YP_003490523.1| berberine bridge protein [Streptomyces scabiei 87.22]
 gi|260648867|emb|CBG71981.1| putative berberine bridge enzyme [Streptomyces scabiei 87.22]
Length=514

 Score = 58.5 bits (140),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 35/104 (34%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query  84   GRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATANKWLSDAHHAV-  142
            G  S  + +LGG V  + P  +AF   R   + Q+  +  S    ATA  WL  AH ++ 
Sbjct  405  GAGSIALTALGGQVNRVSPTATAFVHRRSRMLAQYLASWKSGTSGATAQSWLDKAHKSMA  464

Query  143  QHFSVGGYVNYLEANAA--ASQYFGANLSRLTTVRRKYDPDRIM  184
            +H S   Y NY +         Y+G  + RLTT+++KYDP+R  
Sbjct  465  RHASGAAYQNYTDPTLTDWKKAYYGDAVPRLTTLKKKYDPNRFF  508


>gi|311900287|dbj|BAJ32695.1| putative oxidoreductase [Kitasatospora setae KM-6054]
Length=515

 Score = 58.2 bits (139),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query  89   LIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPSDG--QVATANKWLSDAHHAVQHFS  146
            L+DSLGGAVG++ P+G+AFP     A  Q Y    S    +V  A   + D     +  +
Sbjct  409  LLDSLGGAVGEIAPDGTAFPHRGSLASAQVYAAATSANADRVRAAVDEIRDG--LARLGA  466

Query  147  VGGYVNYLEANAA--ASQYFGANLSRLTTVRRKYDPDRIM  184
             G YVNY++A        Y+G NL RL  V R+YDPD + 
Sbjct  467  PGAYVNYIDATLPDWGRAYYGDNLPRLREVARRYDPDGVF  506


>gi|345008298|ref|YP_004810652.1| FAD linked oxidase domain-containing protein [Streptomyces violaceusniger 
Tu 4113]
 gi|344034647|gb|AEM80372.1| FAD linked oxidase domain protein [Streptomyces violaceusniger 
Tu 4113]
Length=538

 Score = 57.4 bits (137),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 32/101 (32%), Positives = 55/101 (55%), Gaps = 3/101 (2%)

Query  87   SALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATANKWLSDAHHAVQHFS  146
            S  + +LGGAV  + P  ++F   R   + Q+  +  + G     N WL  AH A++ ++
Sbjct  432  SIALTALGGAVNRVSPTTTSFVHRRSRFLAQYTASWAASGSGTAGNAWLDGAHTAMRRYA  491

Query  147  VG-GYVNYLEANAAA--SQYFGANLSRLTTVRRKYDPDRIM  184
             G  Y NY +A+     S Y+G+   +LT ++++YDPDR+ 
Sbjct  492  SGAAYQNYTDASLKDWRSAYYGSAADKLTRLKKRYDPDRLF  532


>gi|229083655|ref|ZP_04215980.1| FAD linked oxidase domain protein [Bacillus cereus Rock3-44]
 gi|228699673|gb|EEL52333.1| FAD linked oxidase domain protein [Bacillus cereus Rock3-44]
Length=446

 Score = 57.0 bits (136),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 40/145 (28%), Positives = 69/145 (48%), Gaps = 8/145 (5%)

Query  39   VRYLAGGHTTYPPEGFVAGSDVIGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVG  98
            V++   G+    PE F      +    P A   I+    +  P    AS    SL GAV 
Sbjct  290  VKFFNSGNI---PEKFKRSGSYVYKPIPLAGIQILKHFLSHAPNPS-ASVWHQSLVGAVE  345

Query  99   DMDPEGSAFPWCRQSAVVQWYVNT-PSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEAN  157
            D+ P  +A+ + R++ + Q Y++    D +     +W+ +   A+  +++G YVN+ + +
Sbjct  346  DITPSETAY-FHRKAIIAQEYISAWECDNEEEENIQWIKNLRKAMSPYTLGDYVNWPDID  404

Query  158  AAASQ--YFGANLSRLTTVRRKYDP  180
                Q  Y+G N S+L  V+ KYDP
Sbjct  405  IKDWQRTYYGTNFSKLRAVKTKYDP  429


>gi|154685342|ref|YP_001420503.1| YgaK [Bacillus amyloliquefaciens FZB42]
 gi|154351193|gb|ABS73272.1| YgaK [Bacillus amyloliquefaciens FZB42]
Length=455

 Score = 56.2 bits (134),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 33/102 (33%), Positives = 53/102 (52%), Gaps = 4/102 (3%)

Query  86   ASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATAN-KWLSDAHHAVQH  144
            AS    SLGGA G + P+ +AF + R + + Q Y+ T +  +    N +W+     ++  
Sbjct  340  ASVWQQSLGGAAGRIAPDQTAF-YYRNAIIAQEYITTWTSAEEERQNVRWIEGLRTSLSR  398

Query  145  FSVGGYVNY--LEANAAASQYFGANLSRLTTVRRKYDPDRIM  184
             ++G YVN+   E       Y+G N+ RL  V+ KYDP+ I 
Sbjct  399  ETMGDYVNWPDREIRNWLQTYYGENVHRLRQVKTKYDPENIF  440


>gi|290955746|ref|YP_003486928.1| berberine bridge protein [Streptomyces scabiei 87.22]
 gi|260645272|emb|CBG68358.1| putative berberine bridge enzyme [Streptomyces scabiei 87.22]
Length=451

 Score = 55.1 bits (131),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 41/129 (32%), Positives = 64/129 (50%), Gaps = 14/129 (10%)

Query  67   AAAQAIVAAIGTWPPAA---GRASALIDSLGGAVGDMDPEGSAFP----WCRQSAVVQWY  119
            A    ++ A+  WP +    G   AL  + GGA+  +    +AFP        S    W 
Sbjct  320  AGVDTMLTALRKWPGSGNPDGAGIALF-TWGGAINRVPVTETAFPHRDVLFLVSMDTSWS  378

Query  120  VNTPSDGQVATAN-KWLSDAHHAV-QHFSVGGYVNYLEANAAASQ--YFGANLSRLTTVR  175
             + P  G+V  AN  WL++ H A+  H     YVN+ + + + +Q  YFG NL RL  ++
Sbjct  379  TDDP--GEVRRANLDWLTELHAAMGAHARDASYVNFADPDLSGAQAAYFGPNLPRLREIK  436

Query  176  RKYDPDRIM  184
            R+YDP+R+ 
Sbjct  437  RRYDPERVF  445


>gi|337763465|emb|CCB72173.1| Lipoprotein [Streptomyces cattleya NRRL 8057]
Length=512

 Score = 55.1 bits (131),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 34/104 (33%), Positives = 54/104 (52%), Gaps = 8/104 (7%)

Query  84   GRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATANKWLSDAHHAVQ  143
            G  S  + +LGGAV  + P  +AF   R   + Q+  + P +     +  WL   HHA++
Sbjct  408  GAGSVALTALGGAVNRVAPTATAFVHRRSRFLAQYLASGPLE-----SAAWLPGIHHAMR  462

Query  144  HFSVGG-YVNYLEANAAASQ--YFGANLSRLTTVRRKYDPDRIM  184
             ++ G  Y NY++      +  Y+G  L RLT V+R+YDP R+ 
Sbjct  463  PYASGAAYQNYIDPTLTDWRRAYYGPALDRLTAVKRQYDPQRLF  506


>gi|297158512|gb|ADI08224.1| lipoprotein [Streptomyces bingchenggensis BCW-1]
Length=540

 Score = 55.1 bits (131),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 36/115 (32%), Positives = 56/115 (49%), Gaps = 3/115 (2%)

Query  73   VAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATAN  132
            V A G      G  S  + +LGGAV  + P  +AF   R   + Q+  +  + G      
Sbjct  420  VEAYGRRTSGGGAVSIALTALGGAVNRVAPTATAFVHRRSRFLAQYTASWAAGGAGTAQL  479

Query  133  KWLSDAHHAV-QHFSVGGYVNYLEANAAA--SQYFGANLSRLTTVRRKYDPDRIM  184
             WL   H A+ +H S   Y NY +A+     + Y+G+   RLT ++++YDPDR+ 
Sbjct  480  SWLDGVHTAMRRHASGAAYQNYTDASLKDWRTAYYGSAADRLTKLKKRYDPDRLF  534


>gi|297193507|ref|ZP_06910905.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151813|gb|EDY62126.2| lipoprotein [Streptomyces pristinaespiralis ATCC 25486]
Length=522

 Score = 55.1 bits (131),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 32/101 (32%), Positives = 52/101 (52%), Gaps = 3/101 (2%)

Query  87   SALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATANKWLSDAHHAVQHFS  146
            S  + +LGGAV  +DP  ++F   R   + Q+          A    WL D H +++ ++
Sbjct  416  SIALTALGGAVNRVDPLATSFVHRRSRMLAQYIAAWRPGTGGAAQQSWLRDTHASLRRYA  475

Query  147  VGG-YVNYLEANAAASQ--YFGANLSRLTTVRRKYDPDRIM  184
             G  Y NY +   +  +  Y+G  L RLT ++R+YDPDR+ 
Sbjct  476  SGAAYQNYADPTLSDWRRAYYGPALDRLTRLKRRYDPDRVF  516


>gi|150018781|ref|YP_001311035.1| FAD linked oxidase domain-containing protein [Clostridium beijerinckii 
NCIMB 8052]
 gi|149905246|gb|ABR36079.1| FAD linked oxidase domain protein [Clostridium beijerinckii NCIMB 
8052]
Length=457

 Score = 54.3 bits (129),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 35/152 (24%), Positives = 69/152 (46%), Gaps = 5/152 (3%)

Query  36   MDLVRYLAGGHTTYPPEGFVAGSDVIGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGG  95
            +D+ R +  GH  Y      AG  V    + +  + I+  +      A  A+  +  LGG
Sbjct  293  LDVNRRIQDGHPLYEKYK-SAGRFVYKDYSRSEMKKIIELVEERAKGAVYAAVSLYGLGG  351

Query  96   AVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATAN-KWLSDAHHAVQHFSVGGYVNY-  153
            A+ + D   +AF + R +  +  + +   + + A  N +W+ +    +   + G Y+N+ 
Sbjct  352  AIMEKDKNDTAF-YYRDAKFIMGFQSVWEEAEYAPMNIEWVKEKLKYINSITTGSYINFP  410

Query  154  -LEANAAASQYFGANLSRLTTVRRKYDPDRIM  184
              + +    +Y+G NL +L  V+ KYDP  + 
Sbjct  411  CEDIDEYEKEYYGENLEKLREVKLKYDPYEVF  442


>gi|228906137|ref|ZP_04070026.1| FAD linked oxidase domain protein [Bacillus thuringiensis IBL 
200]
 gi|228853546|gb|EEM98314.1| FAD linked oxidase domain protein [Bacillus thuringiensis IBL 
200]
Length=422

 Score = 53.9 bits (128),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 37/150 (25%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query  39   VRYLAGGHTTYPPEGFVAGSDVIGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVG  98
            V +  GG+    PE F      +    P     I+    +  P    AS    SL GAV 
Sbjct  268  VEFFNGGNI---PENFKRSGSYVYKPIPLKGIQIMQYFLSHAPNKD-ASIWHQSLIGAVE  323

Query  99   DMDPEGSAFPWCRQSAVVQWYVNT-PSDGQVATANKWLSDAHHAVQHFSVGGYVNY--LE  155
            ++ P  +A+ + R++ + Q Y+ +   D +     +W+ D   ++  +++G YVN+  ++
Sbjct  324  NISPNETAY-FHRKAIIAQEYITSWKCDDEENRNIRWVKDLRESLDPYTLGDYVNWPDID  382

Query  156  ANAAASQYFGANLSRLTTVRRKYDPDRIMY  185
                 + Y+G+N  RL  V+  YDP  + +
Sbjct  383  IKNWETSYYGSNFHRLRKVKTMYDPCNVFH  412


>gi|293374554|ref|ZP_06620874.1| FAD binding domain protein [Turicibacter sanguinis PC909]
 gi|292646820|gb|EFF64810.1| FAD binding domain protein [Turicibacter sanguinis PC909]
Length=443

 Score = 53.9 bits (128),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (45%), Gaps = 15/150 (10%)

Query  37   DLVRYLAGGHTTYPPEGFVAGSDVIGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGA  96
            D  +Y +GG   Y     V   +++      A  ++  AI  +             +GGA
Sbjct  299  DFEKYRSGGRFIYRHYTEVELKEMLHLIEVRAEGSLYTAITFY------------GVGGA  346

Query  97   VGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATANK-WLSDAHHAVQHFSVGGYVNY-L  154
            V D+ P+ SA+ + R +  +  + +   + + A  N+ W+ +    +  ++ G ++N+ +
Sbjct  347  VSDVSPQESAY-YYRDAIFILGFQSVWEESKYAPTNRQWVEERFKILSTYTEGSFINFPI  405

Query  155  EANAAASQYFGANLSRLTTVRRKYDPDRIM  184
                   QY+G NL RL  V+ KYDPD   
Sbjct  406  AQQNYEKQYYGENLPRLKLVKAKYDPDNFF  435


>gi|126653149|ref|ZP_01725273.1| probable reticuline oxidase [Bacillus sp. B14905]
 gi|126590065|gb|EAZ84191.1| probable reticuline oxidase [Bacillus sp. B14905]
Length=451

 Score = 53.9 bits (128),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 39/144 (28%), Positives = 69/144 (48%), Gaps = 6/144 (4%)

Query  46   HTTYPP-EGFVA-GSDVIGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPE  103
              TYPP E F + G  V  +      + IV  + + P  +  A+    +LGGA+ ++  E
Sbjct  302  EATYPPFEKFKSTGRFVQRSYTLDELENIVKLVESPPDGSIYAAISFYALGGAINNISKE  361

Query  104  GSAFPWCRQSAVVQWYVNTPSDGQVATANK-WLSDAHHAVQHFSVGGYVNYLEANAA--A  160
             +AF + R +  +    +   + + A  N+ W+ +    +++ + G YVN+  +N     
Sbjct  362  ETAF-YFRDAKYIMGIQSVWVEDKYAKNNQEWVRERFEIIKNVTKGSYVNFPISNLKNFE  420

Query  161  SQYFGANLSRLTTVRRKYDPDRIM  184
             +YFG N  RL  V +KYDP  + 
Sbjct  421  KEYFGGNAQRLNQVNQKYDPFNVF  444


>gi|325843483|ref|ZP_08167993.1| FAD binding domain protein [Turicibacter sp. HGF1]
 gi|325489302|gb|EGC91678.1| FAD binding domain protein [Turicibacter sp. HGF1]
Length=443

 Score = 53.5 bits (127),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (45%), Gaps = 15/150 (10%)

Query  37   DLVRYLAGGHTTYPPEGFVAGSDVIGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGA  96
            D  +Y +GG   Y     V   +++      A  ++  AI  +             +GGA
Sbjct  299  DFEKYRSGGRFIYRHYTEVELKEMLHLIEVRAEGSLYTAITFY------------GVGGA  346

Query  97   VGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATANK-WLSDAHHAVQHFSVGGYVNY-L  154
            V D+ P+ SA+ + R +  +  + +   + + A  N+ W+ +    +  ++ G ++N+ +
Sbjct  347  VSDVSPQESAY-YYRDAIFILGFQSVWEESKYAPTNRQWVEERFKILSTYTEGSFINFPI  405

Query  155  EANAAASQYFGANLSRLTTVRRKYDPDRIM  184
                   QY+G NL RL  V+ KYDPD   
Sbjct  406  AQQNYEKQYYGENLPRLKLVKAKYDPDNFF  435


>gi|86738766|ref|YP_479166.1| twin-arginine translocation pathway signal [Frankia sp. CcI3]
 gi|86565628|gb|ABD09437.1| Twin-arginine translocation pathway signal [Frankia sp. CcI3]
Length=532

 Score = 53.5 bits (127),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 39/110 (36%), Positives = 52/110 (48%), Gaps = 6/110 (5%)

Query  81   PAAGRASALIDSLGGAVGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVA--TANK-WLSD  137
            P AG    ++DS GGA+  + P  +AF      A  Q+      D   A   AN+ WL  
Sbjct  414  PGAGPGGVILDSWGGAINRVGPGDTAFVHRNTLASAQFVAGYSVDASPADKEANQSWLRS  473

Query  138  AHHAVQHF-SVGGYVNYLEANAA--ASQYFGANLSRLTTVRRKYDPDRIM  184
               A   F S   Y NY++ +    A  Y+GANL RL  V+R YDPD + 
Sbjct  474  TVAATAPFMSSSAYQNYIDPDLTTWADAYYGANLPRLRQVKRAYDPDNLF  523


>gi|302387530|ref|YP_003823352.1| FAD linked oxidase domain protein [Clostridium saccharolyticum 
WM1]
 gi|302198158|gb|ADL05729.1| FAD linked oxidase domain protein [Clostridium saccharolyticum 
WM1]
Length=463

 Score = 53.5 bits (127),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 39/140 (28%), Positives = 66/140 (48%), Gaps = 6/140 (4%)

Query  49   YPP-EGFVAGSDV-IGTTNPAAAQAIVAAIGTWPPAAGRASALIDSLGGAVGDMDPEGSA  106
            YPP E F + S   +   +   +  I   I      +  AS    +LGG V ++D E +A
Sbjct  302  YPPYEKFKSASRFALRDFSNCESLKIAGLIKERAEGSVYASISFYALGGKVAEVDEEETA  361

Query  107  FPWCRQSAVVQWYVNTPSDGQVATANKWLSDAHHAVQHFSVGGYVNYLEAN--AAASQYF  164
            F + R++  + W ++T  D        W++D    ++  + G YVN+  A       +Y+
Sbjct  362  FFY-RKANYIVW-LDTVFDEHKCKNAAWIADRFRYLESVTKGSYVNFPYACLPCYLEEYY  419

Query  165  GANLSRLTTVRRKYDPDRIM  184
            G+++ RL  V+ KYDP  I 
Sbjct  420  GSHVCRLKKVKEKYDPFNIF  439


>gi|315647202|ref|ZP_07900315.1| FAD linked oxidase domain protein [Paenibacillus vortex V453]
 gi|315277404|gb|EFU40733.1| FAD linked oxidase domain protein [Paenibacillus vortex V453]
Length=473

 Score = 53.5 bits (127),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 40/161 (25%), Positives = 69/161 (43%), Gaps = 7/161 (4%)

Query  25   PSGVEHKTLRRMDLVRYLAGGHTTYPPEGFVAGSDVIGTTNPAAAQAIVAAIGTWPPAAG  84
            P  V  +T+  ++  ++ A G     P+  + G+       P   + I   +   P    
Sbjct  283  PVKVMVRTVPFIEATQFFAAGDLNLEPKFKITGAFGYKPLPPEGVRMIRDFLSKAP--NK  340

Query  85   RASALIDSLGGA---VGDMDPEGSAFPWCRQSAVVQWYVNTPSDGQVATANKWLSDAHHA  141
             A+    SLGGA   V  + P  +A+P  +   V +      +D +     +W+     A
Sbjct  341  HATVWCQSLGGAGSAVSRVSPTATAYPHRKAETVYELSARWRNDKEQQRNIQWVKRFRKA  400

Query  142  VQHFSVGGYVNY--LEANAAASQYFGANLSRLTTVRRKYDP  180
            ++ + VG YVN+  L        Y+G N +RL  V++KYDP
Sbjct  401  LRPYVVGDYVNFPDLGIKNWPKSYYGVNFARLKRVKQKYDP  441



Lambda     K      H
   0.320    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 397943428394


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40