BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3352c
Length=123
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610488|ref|NP_217869.1| oxidoreductase [Mycobacterium tuber... 239 1e-61
gi|306777693|ref|ZP_07416030.1| oxidoreductase [Mycobacterium tu... 238 3e-61
gi|340628334|ref|YP_004746786.1| putative oxidoreductase [Mycoba... 199 9e-50
gi|240169077|ref|ZP_04747736.1| oxidoreductase [Mycobacterium ka... 178 3e-43
gi|183981201|ref|YP_001849492.1| oxidoreductase [Mycobacterium m... 155 2e-36
gi|342861566|ref|ZP_08718213.1| oxidoreductase [Mycobacterium co... 155 2e-36
gi|118617104|ref|YP_905436.1| oxidoreductase [Mycobacterium ulce... 154 5e-36
gi|296168838|ref|ZP_06850511.1| MitR protein [Mycobacterium para... 150 7e-35
gi|289760164|ref|ZP_06519542.1| LOW QUALITY PROTEIN: oxidoreduct... 148 3e-34
gi|15607205|ref|NP_214577.1| oxidoreductase [Mycobacterium tuber... 148 3e-34
gi|340625096|ref|YP_004743548.1| putative oxidoreductase [Mycoba... 148 3e-34
gi|289747832|ref|ZP_06507210.1| oxidoreductase [Mycobacterium tu... 148 3e-34
gi|289441429|ref|ZP_06431173.1| oxidoreductase [Mycobacterium tu... 148 3e-34
gi|254548993|ref|ZP_05139440.1| oxidoreductase [Mycobacterium tu... 148 3e-34
gi|289572640|ref|ZP_06452867.1| oxidoreductase [Mycobacterium tu... 147 7e-34
gi|240172438|ref|ZP_04751097.1| putative oxidoreductase [Mycobac... 140 9e-32
gi|296165021|ref|ZP_06847576.1| MitR protein [Mycobacterium para... 139 2e-31
gi|306805844|ref|ZP_07442512.1| oxidoreductase [Mycobacterium tu... 137 5e-31
gi|254818567|ref|ZP_05223568.1| FAD binding domain-containing pr... 135 2e-30
gi|342860205|ref|ZP_08716857.1| FAD binding domain-containing pr... 134 3e-30
gi|41406179|ref|NP_959015.1| hypothetical protein MAP0081 [Mycob... 133 1e-29
gi|336459403|gb|EGO38345.1| FAD/FMN-dependent dehydrogenase [Myc... 133 1e-29
gi|183980145|ref|YP_001848436.1| oxidoreductase [Mycobacterium m... 132 2e-29
gi|118462287|ref|YP_879387.1| FAD binding domain-containing prot... 131 3e-29
gi|297193507|ref|ZP_06910905.1| lipoprotein [Streptomyces pristi... 116 1e-24
gi|302552451|ref|ZP_07304793.1| lipoprotein [Streptomyces virido... 107 8e-22
gi|290959341|ref|YP_003490523.1| berberine bridge protein [Strep... 107 9e-22
gi|29830624|ref|NP_825258.1| lipoprotein [Streptomyces avermitil... 105 2e-21
gi|337763465|emb|CCB72173.1| Lipoprotein [Streptomyces cattleya ... 102 1e-20
gi|325843483|ref|ZP_08167993.1| FAD binding domain protein [Turi... 100 5e-20
gi|293374554|ref|ZP_06620874.1| FAD binding domain protein [Turi... 100 5e-20
gi|345008298|ref|YP_004810652.1| FAD linked oxidase domain-conta... 100 9e-20
gi|32141227|ref|NP_733628.1| lipoprotein [Streptomyces coelicolo... 99.0 2e-19
gi|288921010|ref|ZP_06415302.1| FAD linked oxidase domain protei... 99.0 2e-19
gi|289770287|ref|ZP_06529665.1| lipoprotein [Streptomyces livida... 96.7 1e-18
gi|182419630|ref|ZP_02950875.1| berberine family protein [Clostr... 96.3 1e-18
gi|312200911|ref|YP_004020972.1| FAD linked oxidase domain prote... 95.9 2e-18
gi|297158512|gb|ADI08224.1| lipoprotein [Streptomyces bingchengg... 94.4 6e-18
gi|229011107|ref|ZP_04168300.1| FAD linked oxidase domain protei... 94.4 6e-18
gi|229132645|ref|ZP_04261492.1| FAD linked oxidase domain protei... 94.4 6e-18
gi|148378268|ref|YP_001252809.1| FAD-dependent oxidoreductase [C... 94.4 6e-18
gi|163939622|ref|YP_001644506.1| FAD linked oxidase domain-conta... 94.0 6e-18
gi|302387530|ref|YP_003823352.1| FAD linked oxidase domain prote... 94.0 6e-18
gi|302543624|ref|ZP_07295966.1| twin-arginine translocation path... 94.0 7e-18
gi|332308842|ref|YP_004436692.1| FAD linked oxidase domain prote... 92.0 2e-17
gi|288923063|ref|ZP_06417215.1| FAD linked oxidase domain protei... 92.0 3e-17
gi|299537322|ref|ZP_07050622.1| reticuline oxidase [Lysinibacill... 91.7 3e-17
gi|308050451|ref|YP_003914017.1| FAD linked oxidase domain prote... 91.3 5e-17
gi|302556394|ref|ZP_07308736.1| lipoprotein [Streptomyces virido... 90.9 6e-17
gi|229822144|ref|YP_002883670.1| FAD linked oxidase domain-conta... 89.7 1e-16
>gi|15610488|ref|NP_217869.1| oxidoreductase [Mycobacterium tuberculosis H37Rv]
gi|15842948|ref|NP_337985.1| hypothetical protein MT3460 [Mycobacterium tuberculosis CDC1551]
gi|31794535|ref|NP_857028.1| oxidoreductase [Mycobacterium bovis AF2122/97]
57 more sequence titles
Length=123
Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/123 (99%), Positives = 123/123 (100%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
+SAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV
Sbjct 1 MSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV
Sbjct 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
Query 121 LVG 123
LVG
Sbjct 121 LVG 123
>gi|306777693|ref|ZP_07416030.1| oxidoreductase [Mycobacterium tuberculosis SUMu001]
gi|306973809|ref|ZP_07486470.1| oxidoreductase [Mycobacterium tuberculosis SUMu010]
gi|308213963|gb|EFO73362.1| oxidoreductase [Mycobacterium tuberculosis SUMu001]
gi|308356830|gb|EFP45681.1| oxidoreductase [Mycobacterium tuberculosis SUMu010]
Length=123
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 121/123 (99%), Positives = 122/123 (99%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
+SAATDLYAVHQALAGESRAIPTGSCPTVGVAG TLGGGLGADSRHAGLTCDALKSATVV
Sbjct 1 MSAATDLYAVHQALAGESRAIPTGSCPTVGVAGFTLGGGLGADSRHAGLTCDALKSATVV 60
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV
Sbjct 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
Query 121 LVG 123
LVG
Sbjct 121 LVG 123
>gi|340628334|ref|YP_004746786.1| putative oxidoreductase [Mycobacterium canettii CIPT 140010059]
gi|340006524|emb|CCC45709.1| putative oxidoreductase [Mycobacterium canettii CIPT 140010059]
Length=122
Score = 199 bits (507), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/123 (98%), Positives = 122/123 (99%), Gaps = 1/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
+SAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV
Sbjct 1 MSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LPGGDAVSASADD AELFWALRGGGGG+FGVTTSMTFARFPTADCDVVRVDFAPSAAAQV
Sbjct 61 LPGGDAVSASADD-AELFWALRGGGGGSFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 119
Query 121 LVG 123
LVG
Sbjct 120 LVG 122
>gi|240169077|ref|ZP_04747736.1| oxidoreductase [Mycobacterium kansasii ATCC 12478]
Length=477
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/121 (88%), Positives = 112/121 (93%), Gaps = 0/121 (0%)
Query 3 AATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLP 62
AATDLYAV QALAG RAIPTGSCPTVGV GLTLGGG+GADSRHAGLTCDAL+SATVVLP
Sbjct 139 AATDLYAVQQALAGAGRAIPTGSCPTVGVGGLTLGGGMGADSRHAGLTCDALRSATVVLP 198
Query 63 GGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQVLV 122
GG+ V+ASADDH +LFWALRGGGGGNFGVTTSMTFA FPTAD DVVRVDFAPS+AAQVL
Sbjct 199 GGETVTASADDHPDLFWALRGGGGGNFGVTTSMTFATFPTADSDVVRVDFAPSSAAQVLT 258
Query 123 G 123
G
Sbjct 259 G 259
>gi|183981201|ref|YP_001849492.1| oxidoreductase [Mycobacterium marinum M]
gi|183174527|gb|ACC39637.1| oxidoreductase [Mycobacterium marinum M]
Length=480
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/123 (78%), Positives = 103/123 (84%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V A L VHQ LAG RAIPTGSCPTVGV GL LGGG+GADSRHAGLTCDAL+SATVV
Sbjct 140 VPAGVSLTDVHQVLAGAGRAIPTGSCPTVGVGGLALGGGMGADSRHAGLTCDALRSATVV 199
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G+ V+ASA+DH +LFWALRGGGGGNFGVTT+MTF FP AD DVVRVDF PS+AAQV
Sbjct 200 LPSGETVTASAEDHPDLFWALRGGGGGNFGVTTAMTFETFPVADSDVVRVDFTPSSAAQV 259
Query 121 LVG 123
L G
Sbjct 260 LAG 262
>gi|342861566|ref|ZP_08718213.1| oxidoreductase [Mycobacterium colombiense CECT 3035]
gi|342131055|gb|EGT84344.1| oxidoreductase [Mycobacterium colombiense CECT 3035]
Length=456
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/123 (75%), Positives = 109/123 (89%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT++YAVHQ+LAG RA+PTG+CPTVG+AGL LGGG+GAD+R AGLTCDAL+SATVV
Sbjct 116 VTPATNVYAVHQSLAGAGRAVPTGTCPTVGMAGLALGGGVGADARRAGLTCDALQSATVV 175
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP GD V+ASA+D+ +LFWALRGGGGGNFGVTTSMTFA F TAD D+VR+DF PS+A QV
Sbjct 176 LPSGDVVTASANDNPDLFWALRGGGGGNFGVTTSMTFATFATADSDLVRLDFPPSSAVQV 235
Query 121 LVG 123
L G
Sbjct 236 LTG 238
>gi|118617104|ref|YP_905436.1| oxidoreductase [Mycobacterium ulcerans Agy99]
gi|118569214|gb|ABL03965.1| oxidoreductase [Mycobacterium ulcerans Agy99]
Length=480
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/123 (77%), Positives = 103/123 (84%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V A L VHQ LAG RAIPTGSCPTVGV GL LGGG+GADSRHAGLTC+AL+SATVV
Sbjct 140 VPAGVSLTDVHQVLAGAGRAIPTGSCPTVGVGGLALGGGMGADSRHAGLTCNALRSATVV 199
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G+ V+ASA+DH +LFWALRGGGGGNFGVTT+MTF FP AD DVVRVDF PS+AAQV
Sbjct 200 LPSGETVTASAEDHPDLFWALRGGGGGNFGVTTAMTFETFPVADSDVVRVDFTPSSAAQV 259
Query 121 LVG 123
L G
Sbjct 260 LAG 262
>gi|296168838|ref|ZP_06850511.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896497|gb|EFG76146.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=488
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/123 (74%), Positives = 105/123 (86%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LYA+HQAL G RAIP+G+CPTVGVAGL LGGG+G D+RH GLTCDAL+SATVV
Sbjct 150 VTPATTLYAIHQALTGAGRAIPSGTCPTVGVAGLALGGGIGPDTRHVGLTCDALQSATVV 209
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP GD V+ASA+D+ +LFWALRGGGGGNFGVTTSMTF+ F T DVVR+DF P++A QV
Sbjct 210 LPSGDVVTASANDNPDLFWALRGGGGGNFGVTTSMTFSTFATTSNDVVRLDFPPASATQV 269
Query 121 LVG 123
LVG
Sbjct 270 LVG 272
>gi|289760164|ref|ZP_06519542.1| LOW QUALITY PROTEIN: oxidoreductase [Mycobacterium tuberculosis
T85]
gi|289715728|gb|EFD79740.1| LOW QUALITY PROTEIN: oxidoreductase [Mycobacterium tuberculosis
T85]
Length=480
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/123 (72%), Positives = 100/123 (82%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LYA+HQ LA R IPTG+CPTVGVAG LGGGLGA+SRHAGL CD L SA+VV
Sbjct 141 VTPATGLYAMHQVLAAAGRGIPTGTCPTVGVAGHALGGGLGANSRHAGLLCDQLTSASVV 200
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA DH +LFWALRGGGGGNFGVTTS+TFA FP+ D DVV ++F P + AQV
Sbjct 201 LPSGQAVTASATDHPDLFWALRGGGGGNFGVTTSLTFATFPSGDLDVVNLNFPPQSFAQV 260
Query 121 LVG 123
LVG
Sbjct 261 LVG 263
>gi|15607205|ref|NP_214577.1| oxidoreductase [Mycobacterium tuberculosis H37Rv]
gi|15839441|ref|NP_334478.1| mitR protein [Mycobacterium tuberculosis CDC1551]
gi|31791240|ref|NP_853733.1| oxidoreductase [Mycobacterium bovis AF2122/97]
49 more sequence titles
Length=479
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/123 (72%), Positives = 100/123 (82%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LYA+HQ LA R IPTG+CPTVGVAG LGGGLGA+SRHAGL CD L SA+VV
Sbjct 141 VTPATGLYAMHQVLAAAGRGIPTGTCPTVGVAGHALGGGLGANSRHAGLLCDQLTSASVV 200
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA DH +LFWALRGGGGGNFGVTTS+TFA FP+ D DVV ++F P + AQV
Sbjct 201 LPSGQAVTASATDHPDLFWALRGGGGGNFGVTTSLTFATFPSGDLDVVNLNFPPQSFAQV 260
Query 121 LVG 123
LVG
Sbjct 261 LVG 263
>gi|340625096|ref|YP_004743548.1| putative oxidoreductase [Mycobacterium canettii CIPT 140010059]
gi|340003286|emb|CCC42403.1| putative oxidoreductase [Mycobacterium canettii CIPT 140010059]
Length=479
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/123 (72%), Positives = 100/123 (82%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LYA+HQ LA R IPTG+CPTVGVAG LGGGLGA+SRHAGL CD L SA+VV
Sbjct 141 VTPATGLYAMHQVLAAAGRGIPTGTCPTVGVAGHALGGGLGANSRHAGLLCDQLTSASVV 200
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA DH +LFWALRGGGGGNFGVTTS+TFA FP+ D DVV ++F P + AQV
Sbjct 201 LPSGQAVTASATDHPDLFWALRGGGGGNFGVTTSLTFATFPSGDLDVVNLNFPPQSFAQV 260
Query 121 LVG 123
LVG
Sbjct 261 LVG 263
>gi|289747832|ref|ZP_06507210.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
gi|289688360|gb|EFD55848.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
gi|326905823|gb|EGE52756.1| hypothetical protein TBPG_03789 [Mycobacterium tuberculosis W-148]
gi|339293135|gb|AEJ45246.1| oxidoreductase [Mycobacterium tuberculosis CCDC5079]
gi|339296784|gb|AEJ48894.1| oxidoreductase [Mycobacterium tuberculosis CCDC5180]
Length=486
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/123 (72%), Positives = 100/123 (82%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LYA+HQ LA R IPTG+CPTVGVAG LGGGLGA+SRHAGL CD L SA+VV
Sbjct 141 VTPATGLYAMHQVLAAAGRGIPTGTCPTVGVAGHALGGGLGANSRHAGLLCDQLTSASVV 200
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA DH +LFWALRGGGGGNFGVTTS+TFA FP+ D DVV ++F P + AQV
Sbjct 201 LPSGQAVTASATDHPDLFWALRGGGGGNFGVTTSLTFATFPSGDLDVVNLNFPPQSFAQV 260
Query 121 LVG 123
LVG
Sbjct 261 LVG 263
>gi|289441429|ref|ZP_06431173.1| oxidoreductase [Mycobacterium tuberculosis T46]
gi|289567950|ref|ZP_06448177.1| oxidoreductase [Mycobacterium tuberculosis T17]
gi|289748527|ref|ZP_06507905.1| oxidoreductase [Mycobacterium tuberculosis T92]
gi|289756123|ref|ZP_06515501.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
gi|289414348|gb|EFD11588.1| oxidoreductase [Mycobacterium tuberculosis T46]
gi|289541703|gb|EFD45352.1| oxidoreductase [Mycobacterium tuberculosis T17]
gi|289689114|gb|EFD56543.1| oxidoreductase [Mycobacterium tuberculosis T92]
gi|289696710|gb|EFD64139.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
Length=479
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/123 (72%), Positives = 100/123 (82%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LYA+HQ LA R IPTG+CPTVGVAG LGGGLGA+SRHAGL CD L SA+VV
Sbjct 141 VTPATGLYAMHQVLAAAGRGIPTGTCPTVGVAGHALGGGLGANSRHAGLLCDQLTSASVV 200
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA DH +LFWALRGGGGGNFGVTTS+TFA FP+ D DVV ++F P + AQV
Sbjct 201 LPSGQAVTASATDHPDLFWALRGGGGGNFGVTTSLTFATFPSGDLDVVNLNFPPQSFAQV 260
Query 121 LVG 123
LVG
Sbjct 261 LVG 263
>gi|254548993|ref|ZP_05139440.1| oxidoreductase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=434
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/123 (72%), Positives = 100/123 (82%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LYA+HQ LA R IPTG+CPTVGVAG LGGGLGA+SRHAGL CD L SA+VV
Sbjct 96 VTPATGLYAMHQVLAAAGRGIPTGTCPTVGVAGHALGGGLGANSRHAGLLCDQLTSASVV 155
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA DH +LFWALRGGGGGNFGVTTS+TFA FP+ D DVV ++F P + AQV
Sbjct 156 LPSGQAVTASATDHPDLFWALRGGGGGNFGVTTSLTFATFPSGDLDVVNLNFPPQSFAQV 215
Query 121 LVG 123
LVG
Sbjct 216 LVG 218
>gi|289572640|ref|ZP_06452867.1| oxidoreductase [Mycobacterium tuberculosis K85]
gi|289537071|gb|EFD41649.1| oxidoreductase [Mycobacterium tuberculosis K85]
Length=442
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/123 (72%), Positives = 100/123 (82%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LYA+HQ LA R IPTG+CPTVGVAG LGGGLGA+SRHAGL CD L SA+VV
Sbjct 104 VTPATGLYAMHQVLAAAGRGIPTGTCPTVGVAGHALGGGLGANSRHAGLLCDQLTSASVV 163
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA DH +LFWALRGGGGGNFGVTTS+TFA FP+ D DVV ++F P + AQV
Sbjct 164 LPSGQAVTASATDHPDLFWALRGGGGGNFGVTTSLTFATFPSGDLDVVNLNFPPQSFAQV 223
Query 121 LVG 123
LVG
Sbjct 224 LVG 226
>gi|240172438|ref|ZP_04751097.1| putative oxidoreductase [Mycobacterium kansasii ATCC 12478]
Length=470
Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 87/123 (71%), Positives = 99/123 (81%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LYAVH+ALA R IPTG+CPTVG AG LGGGLGA+SRHAGL CD L SA+VV
Sbjct 132 VTPATGLYAVHEALAEVGRGIPTGTCPTVGAAGHALGGGLGANSRHAGLLCDQLTSASVV 191
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA + +LFWALRGGGGGNFGVTTS+TFA FPT D DVV ++F P + AQV
Sbjct 192 LPSGQAVTASAASNPDLFWALRGGGGGNFGVTTSLTFATFPTKDVDVVNLNFPPQSFAQV 251
Query 121 LVG 123
LVG
Sbjct 252 LVG 254
>gi|296165021|ref|ZP_06847576.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295899669|gb|EFG79120.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=477
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/123 (69%), Positives = 98/123 (80%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT L+A+HQ LAG R IPTG+CP+VG +G LGGGLGA+SRHAGL D L SA+VV
Sbjct 140 VTPATSLHAMHQTLAGAGRGIPTGTCPSVGASGHALGGGLGANSRHAGLLSDQLVSASVV 199
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LPGG AV+AS + +LFWALRGGGGGNFGVTTS+TFA FPT D DVV ++F P A AQV
Sbjct 200 LPGGQAVTASNASNPDLFWALRGGGGGNFGVTTSLTFATFPTTDLDVVNLNFPPEAFAQV 259
Query 121 LVG 123
LVG
Sbjct 260 LVG 262
>gi|306805844|ref|ZP_07442512.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
gi|306970241|ref|ZP_07482902.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
gi|308347734|gb|EFP36585.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
gi|308352358|gb|EFP41209.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
Length=479
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/123 (71%), Positives = 99/123 (81%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LYA+HQ LA R IPTG+CPTVGVAG LGGGLGA+SRHAGL CD L SA+VV
Sbjct 141 VTPATGLYAMHQVLAAAGRGIPTGTCPTVGVAGHALGGGLGANSRHAGLLCDQLTSASVV 200
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA DH +LFWALRGGGGGN GVTTS+TFA FP+ D DVV ++F P + AQV
Sbjct 201 LPSGQAVTASATDHPDLFWALRGGGGGNVGVTTSLTFATFPSGDLDVVNLNFPPQSFAQV 260
Query 121 LVG 123
LVG
Sbjct 261 LVG 263
>gi|254818567|ref|ZP_05223568.1| FAD binding domain-containing protein [Mycobacterium intracellulare
ATCC 13950]
Length=477
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/123 (67%), Positives = 96/123 (79%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LY +H+ LA R +PTG+CP+VG AG LGGGLGA SRHAGL CD L SA+VV
Sbjct 140 VTPATSLYTMHRTLAAAGRGVPTGTCPSVGAAGHALGGGLGAQSRHAGLLCDQLTSASVV 199
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA + +LFWALRGGGGGNFGVTTS+TFA FPT D DVV ++F P + AQV
Sbjct 200 LPNGQAVTASAASNPDLFWALRGGGGGNFGVTTSLTFATFPTKDVDVVNLNFPPESFAQV 259
Query 121 LVG 123
LVG
Sbjct 260 LVG 262
>gi|342860205|ref|ZP_08716857.1| FAD binding domain-containing protein [Mycobacterium colombiense
CECT 3035]
gi|342132583|gb|EGT85812.1| FAD binding domain-containing protein [Mycobacterium colombiense
CECT 3035]
Length=477
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/123 (66%), Positives = 96/123 (79%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LY +H+ LA R +PTG+CP+VG AG LGGG+GA SRHAGL CD L SA+VV
Sbjct 140 VTPATSLYTMHRTLAAVGRGVPTGTCPSVGAAGHALGGGMGAQSRHAGLLCDQLTSASVV 199
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA + +LFWALRGGGGGNFGVTTS+TFA FPT D DVV ++F P + AQV
Sbjct 200 LPNGQAVTASAASNPDLFWALRGGGGGNFGVTTSLTFATFPTKDVDVVNLNFPPQSFAQV 259
Query 121 LVG 123
LVG
Sbjct 260 LVG 262
>gi|41406179|ref|NP_959015.1| hypothetical protein MAP0081 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394527|gb|AAS02398.1| hypothetical protein MAP_0081 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=438
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/123 (66%), Positives = 95/123 (78%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LY +H+ LA R +PTG+CP+VG AG LGGG+GA SRHAGL CD L SA+VV
Sbjct 100 VTPATSLYTMHRTLAAVGRGVPTGTCPSVGAAGHALGGGMGAQSRHAGLLCDQLTSASVV 159
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA + +LFWALRGGGGGNFGVTTS+TFA FPT D D V ++F P + AQV
Sbjct 160 LPSGQAVTASAASNPDLFWALRGGGGGNFGVTTSLTFATFPTKDVDAVNLNFPPQSFAQV 219
Query 121 LVG 123
LVG
Sbjct 220 LVG 222
>gi|336459403|gb|EGO38345.1| FAD/FMN-dependent dehydrogenase [Mycobacterium avium subsp. paratuberculosis
S397]
Length=478
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/123 (66%), Positives = 95/123 (78%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LY +H+ LA R +PTG+CP+VG AG LGGG+GA SRHAGL CD L SA+VV
Sbjct 140 VTPATSLYTMHRTLAAVGRGVPTGTCPSVGAAGHALGGGMGAQSRHAGLLCDQLTSASVV 199
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA + +LFWALRGGGGGNFGVTTS+TFA FPT D D V ++F P + AQV
Sbjct 200 LPSGQAVTASAASNPDLFWALRGGGGGNFGVTTSLTFATFPTKDVDAVNLNFPPQSFAQV 259
Query 121 LVG 123
LVG
Sbjct 260 LVG 262
>gi|183980145|ref|YP_001848436.1| oxidoreductase [Mycobacterium marinum M]
gi|183173471|gb|ACC38581.1| oxidoreductase [Mycobacterium marinum M]
Length=479
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/123 (68%), Positives = 95/123 (78%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ +T LY +HQ LAG R IPTG+CP+VG AG LGGGLGA SRHAGL CDAL SA VV
Sbjct 141 VTPSTGLYEMHQVLAGAGRGIPTGTCPSVGAAGHALGGGLGAHSRHAGLLCDALTSAAVV 200
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+ASA + +LFWALRGGGGGNFGVTTS+TFA F T D D V +DF P + AQV
Sbjct 201 LPSGQAVTASAASNPDLFWALRGGGGGNFGVTTSLTFATFATKDLDAVNLDFPPESFAQV 260
Query 121 LVG 123
L+G
Sbjct 261 LLG 263
>gi|118462287|ref|YP_879387.1| FAD binding domain-containing protein [Mycobacterium avium 104]
gi|254773134|ref|ZP_05214650.1| FAD binding domain-containing protein [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118163574|gb|ABK64471.1| FAD binding domain protein [Mycobacterium avium 104]
Length=478
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/123 (65%), Positives = 94/123 (77%), Gaps = 0/123 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V+ AT LY +H+ LA R +PTG+CP+VG AG LGGG+GA SRHAGL CD L SA+VV
Sbjct 140 VTPATSLYTMHRTLAAVGRGVPTGTCPSVGAAGHALGGGMGAQSRHAGLLCDQLTSASVV 199
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
LP G AV+AS + +LFWALRGGGGGNFGVTTS+TFA FPT D D V ++F P + AQV
Sbjct 200 LPSGQAVTASTASNPDLFWALRGGGGGNFGVTTSLTFATFPTKDVDAVNLNFPPQSFAQV 259
Query 121 LVG 123
LVG
Sbjct 260 LVG 262
>gi|297193507|ref|ZP_06910905.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486]
gi|297151813|gb|EDY62126.2| lipoprotein [Streptomyces pristinaespiralis ATCC 25486]
Length=522
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/121 (51%), Positives = 76/121 (63%), Gaps = 0/121 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
+ A L V+ LA R +P GSCPTVGV+GL LGGG G SR GLTCD+L ATVV
Sbjct 151 MGAGAKLIDVYNTLARHGRTVPAGSCPTVGVSGLALGGGHGVTSRAYGLTCDSLTEATVV 210
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
G A++A+AD++ +LFWALRG G GNFGV T + F PT D +++ A QV
Sbjct 211 TADGRALTANADENKDLFWALRGAGNGNFGVVTRLRFRTSPTPDTVTAYLNWPWQKAEQV 270
Query 121 L 121
L
Sbjct 271 L 271
>gi|302552451|ref|ZP_07304793.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
gi|302470069|gb|EFL33162.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
Length=522
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/121 (48%), Positives = 76/121 (63%), Gaps = 0/121 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V A + L V++ALA + IP GSCPTVGV+GLTLGGG G SR GLTCD+L AT++
Sbjct 157 VGAGSKLIDVYRALAAKGVTIPAGSCPTVGVSGLTLGGGHGVVSRAYGLTCDSLTQATLI 216
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
G ++A+A ++ +LFWALRG G GNFGV T + F P + + S AA V
Sbjct 217 TADGKQLTANARENKDLFWALRGAGNGNFGVVTELHFKTHPAPQGVSAYLSWPWSKAAAV 276
Query 121 L 121
+
Sbjct 277 V 277
>gi|290959341|ref|YP_003490523.1| berberine bridge protein [Streptomyces scabiei 87.22]
gi|260648867|emb|CBG71981.1| putative berberine bridge enzyme [Streptomyces scabiei 87.22]
Length=514
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/121 (48%), Positives = 75/121 (62%), Gaps = 0/121 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V A + L V++ALA + IP GSCPTVGV+GLTLGGG G SR GLTCD+L AT++
Sbjct 151 VGAGSKLIDVYRALAAKGVTIPAGSCPTVGVSGLTLGGGHGVTSRAYGLTCDSLTQATLI 210
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
G ++A+A + +LFWALRG G GNFGV T + F P + + S AA V
Sbjct 211 TADGKQLTANATTNKDLFWALRGAGNGNFGVVTELRFKTHPAPQGVTAYLTWPWSKAAAV 270
Query 121 L 121
+
Sbjct 271 V 271
>gi|29830624|ref|NP_825258.1| lipoprotein [Streptomyces avermitilis MA-4680]
gi|29607736|dbj|BAC71793.1| putative lipoprotein [Streptomyces avermitilis MA-4680]
Length=525
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/121 (48%), Positives = 75/121 (62%), Gaps = 0/121 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V A + L V++ALA + IP GSCPTVGV+GLTLGGG G SR GLTCD+L AT++
Sbjct 160 VGAGSKLIDVYRALAAKGVTIPAGSCPTVGVSGLTLGGGHGVVSRAYGLTCDSLTQATLI 219
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
G + A+A ++ +LFWALRG G GNFGV T + F P + + S AA V
Sbjct 220 TADGKQLVANATENKDLFWALRGAGNGNFGVVTELHFKTHPAPQGVSAYMTWPWSKAAAV 279
Query 121 L 121
+
Sbjct 280 V 280
>gi|337763465|emb|CCB72173.1| Lipoprotein [Streptomyces cattleya NRRL 8057]
Length=512
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/105 (52%), Positives = 63/105 (60%), Gaps = 0/105 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V A L V+ L R IP GSCPTVGV+GLTLGGG G +R GLTCD+L A +V
Sbjct 149 VGAGAKLIDVYNTLGRRGRTIPAGSCPTVGVSGLTLGGGHGVAARAYGLTCDSLTGAALV 208
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADC 105
G V A A ++ELFWALRG G GNFGV T + + P C
Sbjct 209 TADGRTVQADARHNSELFWALRGAGNGNFGVVTELRYRTHPAPAC 253
>gi|325843483|ref|ZP_08167993.1| FAD binding domain protein [Turicibacter sp. HGF1]
gi|325489302|gb|EGC91678.1| FAD binding domain protein [Turicibacter sp. HGF1]
Length=443
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 50/114 (44%), Positives = 71/114 (63%), Gaps = 3/114 (2%)
Query 10 VHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSA 69
+++A+ G P G CPTVGVAG TLGGG G SR GL CD+L A V+ GD + A
Sbjct 108 LYEAVCGAGYPFPGGGCPTVGVAGFTLGGGWGYSSRLYGLGCDSLIEAEVIDYKGDKLVA 167
Query 70 SADDHAELFWALRGGGGGNFGVTTSMTFARFP--TADCDVVRVDFAPSAAAQVL 121
+ + +L+WAL+GGG GNFGV T +T+ + P A C +V +D+ + +V+
Sbjct 168 NHQMNPDLYWALKGGGSGNFGVVTKLTY-KLPEKMAMCTLVNIDYQRVSVEKVI 220
>gi|293374554|ref|ZP_06620874.1| FAD binding domain protein [Turicibacter sanguinis PC909]
gi|292646820|gb|EFF64810.1| FAD binding domain protein [Turicibacter sanguinis PC909]
Length=443
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 50/114 (44%), Positives = 71/114 (63%), Gaps = 3/114 (2%)
Query 10 VHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSA 69
+++A+ G P G CPTVGVAG TLGGG G SR GL CD+L A V+ GD + A
Sbjct 108 LYEAVCGAGYPFPGGGCPTVGVAGFTLGGGWGYSSRLYGLGCDSLIEAEVIDYKGDKLVA 167
Query 70 SADDHAELFWALRGGGGGNFGVTTSMTFARFP--TADCDVVRVDFAPSAAAQVL 121
+ + +L+WAL+GGG GNFGV T +T+ + P A C +V +D+ + +V+
Sbjct 168 NHQMNPDLYWALKGGGSGNFGVVTKLTY-KLPEKMAMCTLVNIDYQRVSVEKVI 220
>gi|345008298|ref|YP_004810652.1| FAD linked oxidase domain-containing protein [Streptomyces violaceusniger
Tu 4113]
gi|344034647|gb|AEM80372.1| FAD linked oxidase domain protein [Streptomyces violaceusniger
Tu 4113]
Length=538
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/115 (48%), Positives = 69/115 (60%), Gaps = 0/115 (0%)
Query 7 LYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDA 66
L V+ +L +P GSCP+VG++GLTLGGG G SR GLT D+L AT+V G A
Sbjct 173 LIGVYTSLGARGVTVPGGSCPSVGISGLTLGGGHGVVSRAYGLTADSLTGATIVTADGKA 232
Query 67 VSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQVL 121
+ S D A+LFWALRG G GNFGV T + F AD + + S AA+VL
Sbjct 233 LEVSKDREADLFWALRGAGNGNFGVVTELRFRTHEAADGVTCYMSWPWSKAAKVL 287
>gi|32141227|ref|NP_733628.1| lipoprotein [Streptomyces coelicolor A3(2)]
gi|24427856|emb|CAD55473.1| putative lipoprotein [Streptomyces coelicolor A3(2)]
Length=527
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/102 (51%), Positives = 65/102 (64%), Gaps = 1/102 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V A L V++ALA + +P GSCPTVG++GLTLGGG G SR GLTCD+L AT++
Sbjct 161 VGAGAKLIDVYRALAAKGVTVPAGSCPTVGISGLTLGGGHGVVSRAYGLTCDSLTRATLI 220
Query 61 LPGGDAVSASADD-HAELFWALRGGGGGNFGVTTSMTFARFP 101
G ++A A H +LFWALRG G GNFG+ T F P
Sbjct 221 TADGKEITADATGAHKDLFWALRGAGNGNFGIVTEFRFRTHP 262
>gi|288921010|ref|ZP_06415302.1| FAD linked oxidase domain protein [Frankia sp. EUN1f]
gi|288347585|gb|EFC81870.1| FAD linked oxidase domain protein [Frankia sp. EUN1f]
Length=583
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/121 (53%), Positives = 73/121 (61%), Gaps = 0/121 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V A L V+ L I GSCPTVG+AGLTLGGG+G R GLTCD L +A VV
Sbjct 175 VGAGAPLVDVYDQLIQAGAMIAAGSCPTVGIAGLTLGGGIGVLGRRHGLTCDQLLAAEVV 234
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
L G+ V A+ A+LFWALRGGGGGNFGV TS TFA P V + AAA+V
Sbjct 235 LASGEIVQVDAERDADLFWALRGGGGGNFGVVTSFTFATHPATPLTVFSYRWPWDAAAEV 294
Query 121 L 121
+
Sbjct 295 V 295
>gi|289770287|ref|ZP_06529665.1| lipoprotein [Streptomyces lividans TK24]
gi|289700486|gb|EFD67915.1| lipoprotein [Streptomyces lividans TK24]
Length=527
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 64/102 (63%), Gaps = 1/102 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V A L V++ALA + +P GSCPTVG++GLTLGG G SR GLTCD+L AT++
Sbjct 161 VGAGAKLIDVYRALAAKGVTVPAGSCPTVGISGLTLGGSPGVVSRAYGLTCDSLTRATLI 220
Query 61 LPGGDAVSASADD-HAELFWALRGGGGGNFGVTTSMTFARFP 101
G ++A A H +LFWALRG G GNFG+ T F P
Sbjct 221 TADGKEITADATGAHKDLFWALRGAGNGNFGIVTEFRFRTHP 262
>gi|182419630|ref|ZP_02950875.1| berberine family protein [Clostridium butyricum 5521]
gi|237665874|ref|ZP_04525862.1| FAD binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182376520|gb|EDT74097.1| berberine family protein [Clostridium butyricum 5521]
gi|237658821|gb|EEP56373.1| FAD binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
Length=448
Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/84 (52%), Positives = 55/84 (66%), Gaps = 0/84 (0%)
Query 14 LAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSASADD 73
L + P G CPTVG+AGLTLGGG G SR GL CD+L + G+ ++A+++
Sbjct 115 LCSKGYPFPGGGCPTVGIAGLTLGGGWGYSSRFLGLACDSLMEIEFIDYKGNLITANSNT 174
Query 74 HAELFWALRGGGGGNFGVTTSMTF 97
H +LFWA +G GGGNFGV SMTF
Sbjct 175 HEDLFWASKGCGGGNFGVVVSMTF 198
>gi|312200911|ref|YP_004020972.1| FAD linked oxidase domain protein [Frankia sp. EuI1c]
gi|311232247|gb|ADP85102.1| FAD linked oxidase domain protein [Frankia sp. EuI1c]
Length=533
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/121 (50%), Positives = 75/121 (62%), Gaps = 0/121 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V T L ++ LAG R++ GSCPTVG+AGLTLGGG+G R GLTCD L A VV
Sbjct 159 VGGGTRLIKLYTDLAGAGRSMAGGSCPTVGIAGLTLGGGIGVLGRLYGLTCDQLTGADVV 218
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
L G+ +S + A+LFWALRGGGGGN G+ T+ FA P + V + SAAA V
Sbjct 219 LASGERLSVDENHDADLFWALRGGGGGNVGIVTAFRFATRPARSLTLFSVRWPWSAAADV 278
Query 121 L 121
+
Sbjct 279 I 279
>gi|297158512|gb|ADI08224.1| lipoprotein [Streptomyces bingchenggensis BCW-1]
Length=540
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/116 (47%), Positives = 65/116 (57%), Gaps = 0/116 (0%)
Query 6 DLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGD 65
L V+ L +P GSCPTVG++GLTLGGG G SR GLT D L A++V G
Sbjct 174 KLIDVYTTLGASGVTVPGGSCPTVGISGLTLGGGHGVVSRAYGLTSDNLTGASIVTADGR 233
Query 66 AVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQVL 121
+ S D A+LFWALRG G GNFGV T + F AD + + S AA VL
Sbjct 234 TLQVSKDREADLFWALRGAGNGNFGVVTELRFRTHRAADGVTCYMTWPWSKAATVL 289
>gi|229011107|ref|ZP_04168300.1| FAD linked oxidase domain protein [Bacillus mycoides DSM 2048]
gi|228749990|gb|EEL99822.1| FAD linked oxidase domain protein [Bacillus mycoides DSM 2048]
Length=452
Score = 94.4 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/95 (45%), Positives = 58/95 (62%), Gaps = 0/95 (0%)
Query 10 VHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSA 69
++ ++ + P G+CPTVGV+G TLGGG G SR+ GL CD L ++ G ++A
Sbjct 114 IYDFISSKGYPFPGGTCPTVGVSGYTLGGGWGYSSRYFGLGCDNLIELELIDYKGKVITA 173
Query 70 SADDHAELFWALRGGGGGNFGVTTSMTFARFPTAD 104
+ H +LFWA RG GGGNFG+ S+TF P D
Sbjct 174 NETCHKDLFWACRGAGGGNFGIVVSLTFKLPPIVD 208
>gi|229132645|ref|ZP_04261492.1| FAD linked oxidase domain protein [Bacillus cereus BDRD-ST196]
gi|228650772|gb|EEL06760.1| FAD linked oxidase domain protein [Bacillus cereus BDRD-ST196]
Length=449
Score = 94.4 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/95 (45%), Positives = 58/95 (62%), Gaps = 0/95 (0%)
Query 10 VHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSA 69
++ ++ + P G+CPTVGV+G TLGGG G SR+ GL CD L ++ G ++A
Sbjct 111 IYDFISSKGYPFPGGTCPTVGVSGYTLGGGWGYSSRYFGLGCDNLIELELIDYKGKVITA 170
Query 70 SADDHAELFWALRGGGGGNFGVTTSMTFARFPTAD 104
+ H +LFWA RG GGGNFG+ S+TF P D
Sbjct 171 NETCHKDLFWACRGAGGGNFGIVVSLTFKLPPIVD 205
>gi|148378268|ref|YP_001252809.1| FAD-dependent oxidoreductase [Clostridium botulinum A str. ATCC
3502]
gi|148287752|emb|CAL81818.1| putative FAD-dependent oxidoreductase [Clostridium botulinum
A str. ATCC 3502]
Length=364
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/95 (46%), Positives = 60/95 (64%), Gaps = 0/95 (0%)
Query 10 VHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSA 69
V+ L P GSCPTVG++G+ LGGG G SR+ GLTCD+L ++ G ++A
Sbjct 105 VYNFLGASEYPFPGGSCPTVGISGVVLGGGWGYSSRYFGLTCDSLLELKMIDYRGCLLTA 164
Query 70 SADDHAELFWALRGGGGGNFGVTTSMTFARFPTAD 104
+ + +++L+WA RGGGGGNF + SMTF P D
Sbjct 165 NKNINSDLYWACRGGGGGNFRIVVSMTFKLPPKVD 199
>gi|163939622|ref|YP_001644506.1| FAD linked oxidase domain-containing protein [Bacillus weihenstephanensis
KBAB4]
gi|163861819|gb|ABY42878.1| FAD linked oxidase domain protein [Bacillus weihenstephanensis
KBAB4]
Length=449
Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/95 (45%), Positives = 58/95 (62%), Gaps = 0/95 (0%)
Query 10 VHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSA 69
++ ++ + P G+CPTVGV+G TLGGG G SR+ GL CD L ++ G ++A
Sbjct 111 IYDFISSKGYPFPGGTCPTVGVSGYTLGGGWGYSSRYFGLGCDNLIKLELIDYKGKVITA 170
Query 70 SADDHAELFWALRGGGGGNFGVTTSMTFARFPTAD 104
+ H +LFWA RG GGGNFG+ S+TF P D
Sbjct 171 NETCHKDLFWACRGAGGGNFGIVVSLTFKLPPIVD 205
>gi|302387530|ref|YP_003823352.1| FAD linked oxidase domain protein [Clostridium saccharolyticum
WM1]
gi|302198158|gb|ADL05729.1| FAD linked oxidase domain protein [Clostridium saccharolyticum
WM1]
Length=463
Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 48/110 (44%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query 10 VHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSA 69
+++ ++ + P G+CP+VGV+G LGGG G R+ GL CD+L +V G V+A
Sbjct 111 LYEFVSSKGYPFPGGTCPSVGVSGYALGGGFGLSCRYFGLGCDSLLEIRMVNYEGCMVNA 170
Query 70 SADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQ 119
S+ ++A+LFWA RG GGGNFGV SMTF R P V +D A Q
Sbjct 171 SSQENADLFWACRGAGGGNFGVIVSMTF-RLPHKVNKVTIIDIRYPHADQ 219
>gi|302543624|ref|ZP_07295966.1| twin-arginine translocation pathway signal protein [Streptomyces
hygroscopicus ATCC 53653]
gi|302461242|gb|EFL24335.1| twin-arginine translocation pathway signal protein [Streptomyces
himastatinicus ATCC 53653]
Length=528
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/116 (44%), Positives = 65/116 (57%), Gaps = 0/116 (0%)
Query 6 DLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGD 65
L V+ L +P GSCP+VG++GLTLGGG G +R GLT D L AT++ G
Sbjct 162 KLIDVYNQLGAHGVTVPGGSCPSVGISGLTLGGGHGVVTRAYGLTSDHLTGATLITAAGK 221
Query 66 AVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQVL 121
+ S D +LFWALRG GGGNFGV T + F D + + S AA+VL
Sbjct 222 TLQVSKDREPDLFWALRGAGGGNFGVVTELRFRTRKPGDGVTAYMSWPWSKAAKVL 277
>gi|332308842|ref|YP_004436692.1| FAD linked oxidase domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332176171|gb|AEE25424.1| FAD linked oxidase domain protein [Glaciecola sp. 4H-3-7+YE-5]
Length=706
Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/88 (47%), Positives = 56/88 (64%), Gaps = 0/88 (0%)
Query 14 LAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSASADD 73
L+ ++ +P G+CP VGV G TLGGG+G SR GL+CD + + ++ G + +
Sbjct 382 LSQHNKVVPLGTCPDVGVVGATLGGGIGFLSRKHGLSCDNVLAFNLITSDGQRRVVDSSE 441
Query 74 HAELFWALRGGGGGNFGVTTSMTFARFP 101
H+ELFWALRGGGG FGV T +TF P
Sbjct 442 HSELFWALRGGGGSQFGVITHITFVLHP 469
>gi|288923063|ref|ZP_06417215.1| FAD linked oxidase domain protein [Frankia sp. EUN1f]
gi|288345582|gb|EFC79959.1| FAD linked oxidase domain protein [Frankia sp. EUN1f]
Length=478
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/82 (59%), Positives = 55/82 (68%), Gaps = 1/82 (1%)
Query 20 AIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSASADDHAELFW 79
A+P G T GVAGLTLGGG+G R GL CDAL++A VV GD V SA +H +LFW
Sbjct 139 AVPGGVVSTTGVAGLTLGGGIGWLHRRYGLACDALRAAEVVTASGDVVRCSASEHEDLFW 198
Query 80 ALRGGGGGNFGVTTSMTFARFP 101
ALR GGGGNFGV S F +P
Sbjct 199 ALR-GGGGNFGVVASFEFEAYP 219
>gi|299537322|ref|ZP_07050622.1| reticuline oxidase [Lysinibacillus fusiformis ZC1]
gi|298727213|gb|EFI67788.1| reticuline oxidase [Lysinibacillus fusiformis ZC1]
Length=451
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/88 (50%), Positives = 55/88 (63%), Gaps = 0/88 (0%)
Query 10 VHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSA 69
V+ + P G+CPTVGV+G TLGGG G SR GL CD+L +V G + A
Sbjct 113 VYDFVGSNGYVFPGGTCPTVGVSGFTLGGGWGFSSRLYGLGCDSLLELELVDYEGRIIKA 172
Query 70 SADDHAELFWALRGGGGGNFGVTTSMTF 97
+ + +A+LFWA RG GGGNFGV SMTF
Sbjct 173 NKNCNADLFWACRGAGGGNFGVVISMTF 200
>gi|308050451|ref|YP_003914017.1| FAD linked oxidase domain protein [Ferrimonas balearica DSM 9799]
gi|307632641|gb|ADN76943.1| FAD linked oxidase domain protein [Ferrimonas balearica DSM 9799]
Length=461
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/82 (58%), Positives = 56/82 (69%), Gaps = 1/82 (1%)
Query 20 AIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSASADDHAELFW 79
A+P G T G+AGLTLGGG G +R G+T DAL++A VV GD V ASAD H +LFW
Sbjct 128 AVPVGINSTTGIAGLTLGGGFGWLTRRFGMTVDALRAARVVTVDGDVVEASADSHPDLFW 187
Query 80 ALRGGGGGNFGVTTSMTFARFP 101
ALR GGGGNFGV + F +P
Sbjct 188 ALR-GGGGNFGVVSRFDFQAYP 208
>gi|302556394|ref|ZP_07308736.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
gi|302474012|gb|EFL37105.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
Length=481
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/121 (49%), Positives = 71/121 (59%), Gaps = 0/121 (0%)
Query 1 VSAATDLYAVHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVV 60
V A L V+ +A +R +P GSC TVGVAG+TLGGG+G R GLTCD L A +V
Sbjct 143 VGAGAPLRDVYGGVAQANRCLPAGSCFTVGVAGVTLGGGIGVLQRRFGLTCDHLVGAEMV 202
Query 61 LPGGDAVSASADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQV 120
G ++ SA +LFWALRGGGGGNFG+ T TFA P V V F P +V
Sbjct 203 TADGRTLTVSAARTPDLFWALRGGGGGNFGIVTQFTFATDPAPALTVFVVGFPPGKVPEV 262
Query 121 L 121
L
Sbjct 263 L 263
>gi|229822144|ref|YP_002883670.1| FAD linked oxidase domain-containing protein [Beutenbergia cavernae
DSM 12333]
gi|229568057|gb|ACQ81908.1| FAD linked oxidase domain protein [Beutenbergia cavernae DSM
12333]
Length=446
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/114 (50%), Positives = 67/114 (59%), Gaps = 1/114 (0%)
Query 10 VHQALAGESRAIPTGSCPTVGVAGLTLGGGLGADSRHAGLTCDALKSATVVLPGGDAVSA 69
V AL AI +G +VGV GLTL GG+G R GL D+L +A VVL G V A
Sbjct 113 VAAALGPRGLAISSGDTASVGVGGLTLSGGIGWKVRKHGLALDSLVAAEVVLADGHVVRA 172
Query 70 SADDHAELFWALRGGGGGNFGVTTSMTFARFPTADCDVVRVDFAPSAAAQVLVG 123
SAD++ +LFWALR GGGGN G+ T+ F PT D R+ F S AA VL G
Sbjct 173 SADENPDLFWALR-GGGGNVGIVTAFDFVAHPTTDVVHGRITFPASEAADVLAG 225
Lambda K H
0.318 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131390282924
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40