BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3353c
Length=86
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842949|ref|NP_337986.1| hypothetical protein MT3461 [Mycoba... 170 6e-41
gi|289444991|ref|ZP_06434735.1| oxidoreductase [Mycobacterium tu... 169 1e-40
gi|31794536|ref|NP_857029.1| hypothetical protein Mb3388c [Mycob... 169 2e-40
gi|340628335|ref|YP_004746787.1| hypothetical protein MCAN_33791... 167 5e-40
gi|240169077|ref|ZP_04747736.1| oxidoreductase [Mycobacterium ka... 115 3e-24
gi|118617104|ref|YP_905436.1| oxidoreductase [Mycobacterium ulce... 94.0 8e-18
gi|296168838|ref|ZP_06850511.1| MitR protein [Mycobacterium para... 89.4 2e-16
gi|183981201|ref|YP_001849492.1| oxidoreductase [Mycobacterium m... 87.4 6e-16
gi|342860205|ref|ZP_08716857.1| FAD binding domain-containing pr... 84.3 5e-15
gi|342861566|ref|ZP_08718213.1| oxidoreductase [Mycobacterium co... 83.6 8e-15
gi|289747832|ref|ZP_06507210.1| oxidoreductase [Mycobacterium tu... 80.1 9e-14
gi|289760164|ref|ZP_06519542.1| LOW QUALITY PROTEIN: oxidoreduct... 80.1 9e-14
gi|306805844|ref|ZP_07442512.1| oxidoreductase [Mycobacterium tu... 80.1 1e-13
gi|15607205|ref|NP_214577.1| oxidoreductase [Mycobacterium tuber... 80.1 1e-13
gi|340625096|ref|YP_004743548.1| putative oxidoreductase [Mycoba... 80.1 1e-13
gi|289441429|ref|ZP_06431173.1| oxidoreductase [Mycobacterium tu... 80.1 1e-13
gi|183980145|ref|YP_001848436.1| oxidoreductase [Mycobacterium m... 76.3 1e-12
gi|296165021|ref|ZP_06847576.1| MitR protein [Mycobacterium para... 70.5 8e-11
gi|254818567|ref|ZP_05223568.1| FAD binding domain-containing pr... 67.4 7e-10
gi|118462287|ref|YP_879387.1| FAD binding domain-containing prot... 64.3 6e-09
gi|336459403|gb|EGO38345.1| FAD/FMN-dependent dehydrogenase [Myc... 64.3 6e-09
gi|41406179|ref|NP_959015.1| hypothetical protein MAP0081 [Mycob... 53.1 1e-05
gi|254548993|ref|ZP_05139440.1| oxidoreductase [Mycobacterium tu... 51.2 5e-05
gi|294630134|ref|ZP_06708694.1| twin-arginine translocation path... 47.0 8e-04
gi|240172438|ref|ZP_04751097.1| putative oxidoreductase [Mycobac... 45.4 0.003
gi|32141227|ref|NP_733628.1| lipoprotein [Streptomyces coelicolo... 43.1 0.012
gi|289770287|ref|ZP_06529665.1| lipoprotein [Streptomyces livida... 42.4 0.024
gi|302524094|ref|ZP_07276436.1| predicted protein [Streptomyces ... 42.0 0.034
gi|290959341|ref|YP_003490523.1| berberine bridge protein [Strep... 40.8 0.062
gi|271962989|ref|YP_003337185.1| histidine kinase [Streptosporan... 40.4 0.079
gi|4731337|gb|AAD28454.1|AF127374_9 MitR [Streptomyces lavendulae] 40.4 0.080
gi|297193507|ref|ZP_06910905.1| lipoprotein [Streptomyces pristi... 40.0 0.12
gi|29830624|ref|NP_825258.1| lipoprotein [Streptomyces avermitil... 38.5 0.36
gi|302552451|ref|ZP_07304793.1| lipoprotein [Streptomyces virido... 38.5 0.36
gi|290955746|ref|YP_003486928.1| berberine bridge protein [Strep... 38.5 0.37
gi|297158512|gb|ADI08224.1| lipoprotein [Streptomyces bingchengg... 38.1 0.39
gi|337763465|emb|CCB72173.1| Lipoprotein [Streptomyces cattleya ... 38.1 0.44
gi|294631960|ref|ZP_06710520.1| MitR protein [Streptomyces sp. e... 37.4 0.66
gi|300787189|ref|YP_003767480.1| hypothetical protein AMED_5316 ... 37.4 0.82
gi|171466599|gb|ACB46474.1| FAD-dependent oxidoreductase [Actino... 37.0 0.86
gi|112791722|gb|ABI22120.1| oxidoreductase [Streptomyces lavendu... 37.0 0.88
gi|284032270|ref|YP_003382201.1| FAD linked oxidase domain-conta... 37.0 1.1
gi|298247398|ref|ZP_06971203.1| FAD linked oxidase domain protei... 37.0 1.1
gi|336317656|ref|ZP_08572507.1| FAD/FMN-dependent dehydrogenase ... 36.6 1.2
gi|254383653|ref|ZP_04999002.1| twin-arginine translocation path... 36.2 1.5
gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine ... 35.4 3.0
gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histid... 35.4 3.0
gi|300782708|ref|YP_003762999.1| FAD-binding dehydrogenase [Amyc... 35.0 3.3
gi|321478604|gb|EFX89561.1| hypothetical protein DAPPUDRAFT_9510... 34.7 4.8
gi|337769470|emb|CCB78183.1| Twin-arginine translocation pathway... 34.7 4.8
>gi|15842949|ref|NP_337986.1| hypothetical protein MT3461 [Mycobacterium tuberculosis CDC1551]
gi|254233958|ref|ZP_04927283.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|298526834|ref|ZP_07014243.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
7 more sequence titles
Length=114
Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 60
MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF
Sbjct 29 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 88
Query 61 NSNYSGLNPAAVVTVASQADVRKAVS 86
NSNYSGLNPAAVVTVASQADVRKAVS
Sbjct 89 NSNYSGLNPAAVVTVASQADVRKAVS 114
>gi|289444991|ref|ZP_06434735.1| oxidoreductase [Mycobacterium tuberculosis T46]
gi|289759508|ref|ZP_06518886.1| oxidoreductase [Mycobacterium tuberculosis T85]
gi|308379487|ref|ZP_07486471.2| oxidoreductase [Mycobacterium tuberculosis SUMu010]
gi|289417910|gb|EFD15150.1| oxidoreductase [Mycobacterium tuberculosis T46]
gi|289715072|gb|EFD79084.1| oxidoreductase [Mycobacterium tuberculosis T85]
gi|308356831|gb|EFP45682.1| oxidoreductase [Mycobacterium tuberculosis SUMu010]
Length=87
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 60
MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF
Sbjct 2 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 61
Query 61 NSNYSGLNPAAVVTVASQADVRKAVS 86
NSNYSGLNPAAVVTVASQADVRKAVS
Sbjct 62 NSNYSGLNPAAVVTVASQADVRKAVS 87
>gi|31794536|ref|NP_857029.1| hypothetical protein Mb3388c [Mycobacterium bovis AF2122/97]
gi|57117097|ref|NP_217870.2| hypothetical protein Rv3353c [Mycobacterium tuberculosis H37Rv]
gi|121639280|ref|YP_979504.1| hypothetical protein BCG_3425c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
44 more sequence titles
Length=86
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/86 (100%), Positives = 86/86 (100%), Gaps = 0/86 (0%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 60
MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF
Sbjct 1 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 60
Query 61 NSNYSGLNPAAVVTVASQADVRKAVS 86
NSNYSGLNPAAVVTVASQADVRKAVS
Sbjct 61 NSNYSGLNPAAVVTVASQADVRKAVS 86
>gi|340628335|ref|YP_004746787.1| hypothetical protein MCAN_33791 [Mycobacterium canettii CIPT
140010059]
gi|340006525|emb|CCC45710.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=86
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/86 (99%), Positives = 86/86 (100%), Gaps = 0/86 (0%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 60
MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF
Sbjct 1 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 60
Query 61 NSNYSGLNPAAVVTVASQADVRKAVS 86
NSNYSGLNPAAVVTVASQADV+KAVS
Sbjct 61 NSNYSGLNPAAVVTVASQADVQKAVS 86
>gi|240169077|ref|ZP_04747736.1| oxidoreductase [Mycobacterium kansasii ATCC 12478]
Length=477
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/86 (73%), Positives = 69/86 (81%), Gaps = 0/86 (0%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 60
+SRQ FLRGAVGA ATSAVF + A A P GW LASSIGG+VLLP +G +FTSGKQIF
Sbjct 2 ISRQAFLRGAVGALATSAVFGHVRAAADPSSGWTGLASSIGGRVLLPDSGGSFTSGKQIF 61
Query 61 NSNYSGLNPAAVVTVASQADVRKAVS 86
NS Y+G NPAAVVTV SQADV KAV+
Sbjct 62 NSLYNGSNPAAVVTVTSQADVEKAVA 87
>gi|118617104|ref|YP_905436.1| oxidoreductase [Mycobacterium ulcerans Agy99]
gi|118569214|gb|ABL03965.1| oxidoreductase [Mycobacterium ulcerans Agy99]
Length=480
Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/89 (63%), Positives = 67/89 (76%), Gaps = 3/89 (3%)
Query 1 MSRQTFLRGAVGAPATSA---VFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGK 57
+SRQTFLRGA A A +F + A A P GW++LASSIGG+VLLP+NG +FTSGK
Sbjct 2 ISRQTFLRGAAAATAAGLGSALFGSARAVAEPVSGWSALASSIGGRVLLPSNGASFTSGK 61
Query 58 QIFNSNYSGLNPAAVVTVASQADVRKAVS 86
Q+FNS Y+ NPAAVVTV SQADV KAV+
Sbjct 62 QVFNSLYNNSNPAAVVTVTSQADVEKAVA 90
>gi|296168838|ref|ZP_06850511.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896497|gb|EFG76146.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=488
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/86 (60%), Positives = 60/86 (70%), Gaps = 0/86 (0%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 60
+SRQTFLRGAVG AT AV T A A GW LASSIGG V+LP N F + K++F
Sbjct 17 ISRQTFLRGAVGMLATGAVLGTARAAADAAAGWDGLASSIGGTVVLPTNAAQFATSKKVF 76
Query 61 NSNYSGLNPAAVVTVASQADVRKAVS 86
NS Y +PAAVVTV+SQADV+K V+
Sbjct 77 NSFYDNSSPAAVVTVSSQADVQKVVA 102
>gi|183981201|ref|YP_001849492.1| oxidoreductase [Mycobacterium marinum M]
gi|183174527|gb|ACC39637.1| oxidoreductase [Mycobacterium marinum M]
Length=480
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/68 (67%), Positives = 55/68 (81%), Gaps = 0/68 (0%)
Query 19 VFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQ 78
+F + A A P GW++LASSIGG+VLLP+NG +FTSGKQ+FNS Y+ NPAAVVTV SQ
Sbjct 23 LFGSARAVAEPVSGWSALASSIGGRVLLPSNGASFTSGKQVFNSLYNNSNPAAVVTVTSQ 82
Query 79 ADVRKAVS 86
ADV KAV+
Sbjct 83 ADVEKAVA 90
>gi|342860205|ref|ZP_08716857.1| FAD binding domain-containing protein [Mycobacterium colombiense
CECT 3035]
gi|342132583|gb|EGT85812.1| FAD binding domain-containing protein [Mycobacterium colombiense
CECT 3035]
Length=477
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/90 (58%), Positives = 64/90 (72%), Gaps = 8/90 (8%)
Query 1 MSRQTFLRGAVGAPATSAVF--PTILA--RATPGDGWASLASSIGGQVLLPANGRAFTSG 56
SRQTFLRGAVGA AT AV P + A RAT GW L+S++GG+VLLP + F
Sbjct 5 FSRQTFLRGAVGALATGAVLGAPRVAADPRAT---GWEGLSSALGGKVLLP-DSPQFAGA 60
Query 57 KQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
KQ+FN+NY+GL PAAVVT S ADV+KA++
Sbjct 61 KQVFNTNYNGLTPAAVVTPTSAADVQKAMA 90
>gi|342861566|ref|ZP_08718213.1| oxidoreductase [Mycobacterium colombiense CECT 3035]
gi|342131055|gb|EGT84344.1| oxidoreductase [Mycobacterium colombiense CECT 3035]
Length=456
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/68 (65%), Positives = 53/68 (78%), Gaps = 0/68 (0%)
Query 19 VFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQ 78
+F T A A P GW+ LASSIGG VLLPANG F++GKQ+FNS Y+ NPAAVV V+SQ
Sbjct 1 MFGTGPAAADPATGWSGLASSIGGSVLLPANGSQFSTGKQVFNSFYNNSNPAAVVRVSSQ 60
Query 79 ADVRKAVS 86
ADV+KAV+
Sbjct 61 ADVQKAVA 68
>gi|289747832|ref|ZP_06507210.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
gi|289688360|gb|EFD55848.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
gi|326905823|gb|EGE52756.1| hypothetical protein TBPG_03789 [Mycobacterium tuberculosis W-148]
gi|339293135|gb|AEJ45246.1| oxidoreductase [Mycobacterium tuberculosis CCDC5079]
gi|339296784|gb|AEJ48894.1| oxidoreductase [Mycobacterium tuberculosis CCDC5180]
Length=486
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/87 (53%), Positives = 63/87 (73%), Gaps = 1/87 (1%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPG-DGWASLASSIGGQVLLPANGRAFTSGKQI 59
+SRQTFLRGA GA A AVF ++ A A P GW +L+S++GG+VL P +G F + KQ+
Sbjct 5 ISRQTFLRGAAGALAAGAVFGSVRATADPAASGWEALSSALGGKVLQPDDGPQFATAKQV 64
Query 60 FNSNYSGLNPAAVVTVASQADVRKAVS 86
FN+NY+G PA +VT SQ DV+KA++
Sbjct 65 FNTNYNGYTPAVIVTPTSQLDVQKAMA 91
>gi|289760164|ref|ZP_06519542.1| LOW QUALITY PROTEIN: oxidoreductase [Mycobacterium tuberculosis
T85]
gi|289715728|gb|EFD79740.1| LOW QUALITY PROTEIN: oxidoreductase [Mycobacterium tuberculosis
T85]
Length=480
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/87 (53%), Positives = 63/87 (73%), Gaps = 1/87 (1%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPG-DGWASLASSIGGQVLLPANGRAFTSGKQI 59
+SRQTFLRGA GA A AVF ++ A A P GW +L+S++GG+VL P +G F + KQ+
Sbjct 5 ISRQTFLRGAAGALAAGAVFGSVRATADPAASGWEALSSALGGKVLQPDDGPQFATAKQV 64
Query 60 FNSNYSGLNPAAVVTVASQADVRKAVS 86
FN+NY+G PA +VT SQ DV+KA++
Sbjct 65 FNTNYNGYTPAVIVTPTSQLDVQKAMA 91
>gi|306805844|ref|ZP_07442512.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
gi|306970241|ref|ZP_07482902.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
gi|308347734|gb|EFP36585.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
gi|308352358|gb|EFP41209.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
Length=479
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/87 (53%), Positives = 63/87 (73%), Gaps = 1/87 (1%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPG-DGWASLASSIGGQVLLPANGRAFTSGKQI 59
+SRQTFLRGA GA A AVF ++ A A P GW +L+S++GG+VL P +G F + KQ+
Sbjct 5 ISRQTFLRGAAGALAAGAVFGSVRATADPAASGWEALSSALGGKVLQPDDGPQFATAKQV 64
Query 60 FNSNYSGLNPAAVVTVASQADVRKAVS 86
FN+NY+G PA +VT SQ DV+KA++
Sbjct 65 FNTNYNGYTPAVIVTPTSQLDVQKAMA 91
>gi|15607205|ref|NP_214577.1| oxidoreductase [Mycobacterium tuberculosis H37Rv]
gi|15839441|ref|NP_334478.1| mitR protein [Mycobacterium tuberculosis CDC1551]
gi|31791240|ref|NP_853733.1| oxidoreductase [Mycobacterium bovis AF2122/97]
49 more sequence titles
Length=479
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/87 (53%), Positives = 63/87 (73%), Gaps = 1/87 (1%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPG-DGWASLASSIGGQVLLPANGRAFTSGKQI 59
+SRQTFLRGA GA A AVF ++ A A P GW +L+S++GG+VL P +G F + KQ+
Sbjct 5 ISRQTFLRGAAGALAAGAVFGSVRATADPAASGWEALSSALGGKVLQPDDGPQFATAKQV 64
Query 60 FNSNYSGLNPAAVVTVASQADVRKAVS 86
FN+NY+G PA +VT SQ DV+KA++
Sbjct 65 FNTNYNGYTPAVIVTPTSQLDVQKAMA 91
>gi|340625096|ref|YP_004743548.1| putative oxidoreductase [Mycobacterium canettii CIPT 140010059]
gi|340003286|emb|CCC42403.1| putative oxidoreductase [Mycobacterium canettii CIPT 140010059]
Length=479
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/87 (53%), Positives = 63/87 (73%), Gaps = 1/87 (1%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPG-DGWASLASSIGGQVLLPANGRAFTSGKQI 59
+SRQTFLRGA GA A AVF ++ A A P GW +L+S++GG+VL P +G F + KQ+
Sbjct 5 ISRQTFLRGAAGALAAGAVFGSVRATADPAASGWEALSSALGGKVLQPDDGPQFATAKQV 64
Query 60 FNSNYSGLNPAAVVTVASQADVRKAVS 86
FN+NY+G PA +VT SQ DV+KA++
Sbjct 65 FNTNYNGYTPAVIVTPTSQLDVQKAMA 91
>gi|289441429|ref|ZP_06431173.1| oxidoreductase [Mycobacterium tuberculosis T46]
gi|289567950|ref|ZP_06448177.1| oxidoreductase [Mycobacterium tuberculosis T17]
gi|289748527|ref|ZP_06507905.1| oxidoreductase [Mycobacterium tuberculosis T92]
gi|289756123|ref|ZP_06515501.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
gi|289414348|gb|EFD11588.1| oxidoreductase [Mycobacterium tuberculosis T46]
gi|289541703|gb|EFD45352.1| oxidoreductase [Mycobacterium tuberculosis T17]
gi|289689114|gb|EFD56543.1| oxidoreductase [Mycobacterium tuberculosis T92]
gi|289696710|gb|EFD64139.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
Length=479
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/87 (53%), Positives = 63/87 (73%), Gaps = 1/87 (1%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPG-DGWASLASSIGGQVLLPANGRAFTSGKQI 59
+SRQTFLRGA GA A AVF ++ A A P GW +L+S++GG+VL P +G F + KQ+
Sbjct 5 ISRQTFLRGAAGALAAGAVFGSVRATADPAASGWEALSSALGGKVLQPDDGPQFATAKQV 64
Query 60 FNSNYSGLNPAAVVTVASQADVRKAVS 86
FN+NY+G PA +VT SQ DV+KA++
Sbjct 65 FNTNYNGYTPAVIVTPTSQLDVQKAMA 91
>gi|183980145|ref|YP_001848436.1| oxidoreductase [Mycobacterium marinum M]
gi|183173471|gb|ACC38581.1| oxidoreductase [Mycobacterium marinum M]
Length=479
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/87 (53%), Positives = 61/87 (71%), Gaps = 1/87 (1%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPG-DGWASLASSIGGQVLLPANGRAFTSGKQI 59
+SRQ FLRGA GA A AVF ++ A A P GW L+S++GG+VL P +G F + KQ+
Sbjct 5 ISRQAFLRGAAGALAAGAVFGSVRAAAEPNPSGWEGLSSALGGKVLRPDDGPQFATAKQV 64
Query 60 FNSNYSGLNPAAVVTVASQADVRKAVS 86
FN+NY+ PAAVVT S ADV+KA++
Sbjct 65 FNTNYNDFTPAAVVTPTSAADVQKAMA 91
>gi|296165021|ref|ZP_06847576.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295899669|gb|EFG79120.1| MitR protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=477
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/87 (56%), Positives = 62/87 (72%), Gaps = 2/87 (2%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPG-DGWASLASSIGGQVLLPANGRAFTSGKQI 59
SRQT LRGA GA A VF + A A P GW L+++IGGQVLLP +G F + KQ+
Sbjct 5 FSRQTLLRGAAGALAARTVFGSARATAAPNPTGWEGLSTAIGGQVLLPDSG-GFGAAKQV 63
Query 60 FNSNYSGLNPAAVVTVASQADVRKAVS 86
FN+NY+GL PAA+VT +S ADV+KA++
Sbjct 64 FNTNYNGLTPAAIVTPSSPADVQKAMA 90
>gi|254818567|ref|ZP_05223568.1| FAD binding domain-containing protein [Mycobacterium intracellulare
ATCC 13950]
Length=477
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/87 (56%), Positives = 62/87 (72%), Gaps = 2/87 (2%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPG-DGWASLASSIGGQVLLPANGRAFTSGKQI 59
+SRQTFLRGAVGA A AV + A A P GW L++++GG+VLLP + F S KQ+
Sbjct 5 ISRQTFLRGAVGALAAGAVLGSPRAFADPRPSGWEGLSTALGGKVLLP-DSPQFASAKQV 63
Query 60 FNSNYSGLNPAAVVTVASQADVRKAVS 86
FN+NY+G PAAVVT S ADV+KA++
Sbjct 64 FNTNYNGSTPAAVVTPTSAADVQKAMA 90
>gi|118462287|ref|YP_879387.1| FAD binding domain-containing protein [Mycobacterium avium 104]
gi|254773134|ref|ZP_05214650.1| FAD binding domain-containing protein [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118163574|gb|ABK64471.1| FAD binding domain protein [Mycobacterium avium 104]
Length=478
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/88 (46%), Positives = 54/88 (62%), Gaps = 4/88 (4%)
Query 1 MSRQTFLR--GAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQ 58
+SRQTFLR A P + A P GW L++++GG+VLLP + F KQ
Sbjct 5 ISRQTFLRGAVGALAAGAMLGAPRVGADPRP-SGWEGLSTALGGKVLLP-DSPQFAGAKQ 62
Query 59 IFNSNYSGLNPAAVVTVASQADVRKAVS 86
+FN+NY+G PAAVVT S ADV+KA++
Sbjct 63 VFNTNYNGSTPAAVVTPTSAADVQKAMA 90
>gi|336459403|gb|EGO38345.1| FAD/FMN-dependent dehydrogenase [Mycobacterium avium subsp. paratuberculosis
S397]
Length=478
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/88 (46%), Positives = 54/88 (62%), Gaps = 4/88 (4%)
Query 1 MSRQTFLR--GAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQ 58
+SRQTFLR A P + A P GW L++++GG+VLLP + F KQ
Sbjct 5 ISRQTFLRGAVGALAAGAVLGAPRVGADPRP-SGWEGLSTALGGKVLLP-DSPQFAGAKQ 62
Query 59 IFNSNYSGLNPAAVVTVASQADVRKAVS 86
+FN+NY+G PAAVVT S ADV+KA++
Sbjct 63 VFNTNYNGSTPAAVVTPTSAADVQKAMA 90
>gi|41406179|ref|NP_959015.1| hypothetical protein MAP0081 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41394527|gb|AAS02398.1| hypothetical protein MAP_0081 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=438
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/51 (51%), Positives = 39/51 (77%), Gaps = 1/51 (1%)
Query 36 LASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
+++++GG+VLLP + F KQ+FN+NY+G PAAVVT S ADV+KA++
Sbjct 1 MSTALGGKVLLP-DSPQFAGAKQVFNTNYNGSTPAAVVTPTSAADVQKAMA 50
>gi|254548993|ref|ZP_05139440.1| oxidoreductase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=434
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (73%), Gaps = 0/44 (0%)
Query 43 QVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
+VL P +G F + KQ+FN+NY+G PA +VT SQ DV+KA++
Sbjct 3 EVLQPDDGPQFATAKQVFNTNYNGYTPAVIVTPTSQLDVQKAMA 46
>gi|294630134|ref|ZP_06708694.1| twin-arginine translocation pathway signal [Streptomyces sp.
e14]
gi|292833467|gb|EFF91816.1| twin-arginine translocation pathway signal [Streptomyces sp.
e14]
Length=521
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/54 (38%), Positives = 36/54 (67%), Gaps = 1/54 (1%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
W++LA ++ G ++ P + +T+ +Q++N+ + GL PAAV VA D+R A+S
Sbjct 57 WSALAHTLDGTLIRPGDS-GWTTARQLYNTRFDGLRPAAVAYVAHTDDIRTALS 109
>gi|240172438|ref|ZP_04751097.1| putative oxidoreductase [Mycobacterium kansasii ATCC 12478]
Length=470
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (45%), Positives = 35/47 (75%), Gaps = 1/47 (2%)
Query 40 IGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
+GG+++ P + + F + KQ+FN+NY+G PA +VT S ADV+KA++
Sbjct 37 VGGRLVRPDDPQ-FAAAKQVFNTNYNGSTPAVIVTPTSAADVQKAMA 82
>gi|32141227|ref|NP_733628.1| lipoprotein [Streptomyces coelicolor A3(2)]
gi|24427856|emb|CAD55473.1| putative lipoprotein [Streptomyces coelicolor A3(2)]
Length=527
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/66 (37%), Positives = 37/66 (57%), Gaps = 5/66 (7%)
Query 21 PTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQAD 80
PT A AT W +LA S+ G ++ P + R +T+ Q++N+ + L P AV A D
Sbjct 54 PTPKAPAT----WTALAKSLDGPLIRPGD-RTWTTAHQLYNTRFDTLKPTAVAYAAHPDD 108
Query 81 VRKAVS 86
+R A+S
Sbjct 109 IRTALS 114
>gi|289770287|ref|ZP_06529665.1| lipoprotein [Streptomyces lividans TK24]
gi|289700486|gb|EFD67915.1| lipoprotein [Streptomyces lividans TK24]
Length=527
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/54 (36%), Positives = 32/54 (60%), Gaps = 1/54 (1%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
W +LA S+ G ++ P + R +T+ Q++N+ + L P AV A D+R A+S
Sbjct 62 WTALAKSLDGPLIGPGD-RTWTTAHQLYNTRFDTLKPTAVAYAAHPDDIRTALS 114
>gi|302524094|ref|ZP_07276436.1| predicted protein [Streptomyces sp. AA4]
gi|302432989|gb|EFL04805.1| predicted protein [Streptomyces sp. AA4]
Length=487
Score = 42.0 bits (97), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/109 (33%), Positives = 49/109 (45%), Gaps = 25/109 (22%)
Query 1 MSRQTFLR-------GAVGAPATSAVFPTI-----LARAT-----------PGDGWASLA 37
+ R+TFLR GAV A T+ PT+ RA+ P D W +L
Sbjct 5 VGRRTFLRAAGLTAVGAVAAACTAKPGPTVPQTSPTTRASVPPSTSAKPSGPPD-WNALR 63
Query 38 SSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
+ G ++LP +G F + K+ FN + G NPAAV DV+ V
Sbjct 64 GKLSGDLVLPGDG-GFATAKRAFNPLFDGRNPAAVAKCVKPEDVQACVE 111
>gi|290959341|ref|YP_003490523.1| berberine bridge protein [Streptomyces scabiei 87.22]
gi|260648867|emb|CBG71981.1| putative berberine bridge enzyme [Streptomyces scabiei 87.22]
Length=514
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/60 (32%), Positives = 37/60 (62%), Gaps = 2/60 (3%)
Query 23 ILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVR 82
I++R + D W++LA + G + P + +A+++ +Q++N+ + L P AV VA D+R
Sbjct 43 IVSRTSAAD-WSALARDLDGPLYRPGD-KAWSTARQLYNTRFDTLKPTAVAYVAHADDIR 100
>gi|271962989|ref|YP_003337185.1| histidine kinase [Streptosporangium roseum DSM 43021]
gi|270506164|gb|ACZ84442.1| histidine kinase [Streptosporangium roseum DSM 43021]
Length=487
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/85 (30%), Positives = 47/85 (56%), Gaps = 4/85 (4%)
Query 2 SRQTFLRGAVGAPATSAVFPTILARATPG-DGWASLASSIGGQVLLPANGRAFTSGKQIF 60
R+TFLR +G A + + A A P W +LA + G+++ P + ++ + +++F
Sbjct 6 DRRTFLR--IGGMAALTLGAGMSASAGPSRSDWNALAGGLDGRLIRPGDA-SYDTARRLF 62
Query 61 NSNYSGLNPAAVVTVASQADVRKAV 85
N ++ G+ PA V A+ +DV + V
Sbjct 63 NPSFDGVRPAGVAYCATPSDVAECV 87
>gi|4731337|gb|AAD28454.1|AF127374_9 MitR [Streptomyces lavendulae]
Length=514
Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/60 (29%), Positives = 35/60 (59%), Gaps = 1/60 (1%)
Query 27 ATPGDGWASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
A+ G WASL + G+++LPA+ + +++++ + G+ P AV ++ DVR ++
Sbjct 41 ASRGVDWASLRRHLSGELVLPADT-GYERARKLYSGQFDGIRPQAVAYCRTEEDVRTTLA 99
>gi|297193507|ref|ZP_06910905.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486]
gi|297151813|gb|EDY62126.2| lipoprotein [Streptomyces pristinaespiralis ATCC 25486]
Length=522
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/47 (35%), Positives = 31/47 (66%), Gaps = 1/47 (2%)
Query 40 IGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
+ GQ++ P + A+ S +Q++N+ + L PAAV VA + DV++ ++
Sbjct 62 LDGQLIRPGDA-AYASARQLYNTRFDSLKPAAVAYVAGEDDVKECLA 107
>gi|29830624|ref|NP_825258.1| lipoprotein [Streptomyces avermitilis MA-4680]
gi|29607736|dbj|BAC71793.1| putative lipoprotein [Streptomyces avermitilis MA-4680]
Length=525
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVR 82
W +LA + G ++ P + R++ + Q++N+ + L PAAV VA D+R
Sbjct 61 WTALARDLDGALVRPGD-RSWPAAHQLYNTRFDSLKPAAVAYVAHADDLR 109
>gi|302552451|ref|ZP_07304793.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
gi|302470069|gb|EFL33162.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
Length=522
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/54 (32%), Positives = 33/54 (62%), Gaps = 1/54 (1%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
W++LA + G ++ P + A+ + Q++N+ + L PAAV V+ D+R A++
Sbjct 58 WSALARDLDGPLVRPGD-TAWQTAHQLYNTRFDTLKPAAVAYVSHPDDIRTALA 110
>gi|290955746|ref|YP_003486928.1| berberine bridge protein [Streptomyces scabiei 87.22]
gi|260645272|emb|CBG68358.1| putative berberine bridge enzyme [Streptomyces scabiei 87.22]
Length=451
Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/54 (36%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
W L + G V LP F FN Y+ + PA V++VAS ADV + ++
Sbjct 4 WQGLRERVDGTVRLPGEP-GFDENSSAFNKRYADIRPAGVLSVASVADVTRGIT 56
>gi|297158512|gb|ADI08224.1| lipoprotein [Streptomyces bingchenggensis BCW-1]
Length=540
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/54 (26%), Positives = 32/54 (60%), Gaps = 1/54 (1%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
W +L + G ++ P + +T+ +Q++N+ + L PAAV +A+ +D+ + +
Sbjct 70 WTALGKGLQGDLIRPGDA-DYTTARQLYNTRFDRLRPAAVAYIANTSDISECLD 122
>gi|337763465|emb|CCB72173.1| Lipoprotein [Streptomyces cattleya NRRL 8057]
Length=512
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/65 (25%), Positives = 36/65 (56%), Gaps = 1/65 (1%)
Query 22 TILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADV 81
T + R G W +L + G+++ P + + + ++++N+ + GL PAAV V+ D+
Sbjct 39 TAVPRPRAGADWTALQHGLHGKLIRPGDA-DYDTARRLYNTRFDGLRPAAVAYVSGAGDI 97
Query 82 RKAVS 86
+ ++
Sbjct 98 AECLA 102
>gi|294631960|ref|ZP_06710520.1| MitR protein [Streptomyces sp. e14]
gi|292835293|gb|EFF93642.1| MitR protein [Streptomyces sp. e14]
Length=498
Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/53 (36%), Positives = 30/53 (57%), Gaps = 1/53 (1%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAV 85
W L +++GG V+LP + A+ + KQ+ + L P AVV S DV+ A+
Sbjct 40 WEGLRAAVGGDVVLPGDA-AYGTAKQLAIGEFDSLAPQAVVYAESAEDVQTAI 91
>gi|300787189|ref|YP_003767480.1| hypothetical protein AMED_5316 [Amycolatopsis mediterranei U32]
gi|299796703|gb|ADJ47078.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length=480
Score = 37.4 bits (85), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/85 (32%), Positives = 36/85 (43%), Gaps = 7/85 (8%)
Query 1 MSRQTFLRGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIF 60
M R+ FLR + AV LA P D W L + G + P + + KQ F
Sbjct 1 MDRRAFLR------ISGAVLAASLAGWPPPDDWQRLRERLSGPLFRPGDP-GYPEAKQGF 53
Query 61 NSNYSGLNPAAVVTVASQADVRKAV 85
+ Y P AVV A DV+ A+
Sbjct 54 FTMYDDRVPVAVVGAARVEDVQAAI 78
>gi|171466599|gb|ACB46474.1| FAD-dependent oxidoreductase [Actinomadura kijaniata]
Length=505
Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/54 (30%), Positives = 30/54 (56%), Gaps = 1/54 (1%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
W L S+ G+++LP++ + +Q+ + + G+ PA V A+ DVR +S
Sbjct 36 WERLRRSLSGRLVLPSDA-DYDLARQLHRTTFDGVRPAGVAYCATVDDVRACLS 88
>gi|112791722|gb|ABI22120.1| oxidoreductase [Streptomyces lavendulae]
Length=512
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/61 (30%), Positives = 33/61 (55%), Gaps = 1/61 (1%)
Query 26 RATPGDGWASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAV 85
R + G W+ L+S + G ++LPA+ R + ++ + + P AV S+ DVR A+
Sbjct 37 RRSAGVDWSRLSSRLSGDLVLPADAR-YEQASRLAIGQFDAIRPQAVAYCQSEQDVRTAL 95
Query 86 S 86
+
Sbjct 96 A 96
>gi|284032270|ref|YP_003382201.1| FAD linked oxidase domain-containing protein [Kribbella flavida
DSM 17836]
gi|283811563|gb|ADB33402.1| FAD linked oxidase domain protein [Kribbella flavida DSM 17836]
Length=512
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (30%), Positives = 33/71 (47%), Gaps = 7/71 (9%)
Query 21 PTILARATPGDG------WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVT 74
P+ +A PG+ W LA + G++ P + Q+FN + + PA VV
Sbjct 50 PSEVASTGPGEAATAAPDWTGLARRLDGRLYRPGQ-TGYAGAHQLFNPRWDSVQPAGVVR 108
Query 75 VASQADVRKAV 85
S DVR+A+
Sbjct 109 AGSVDDVREAI 119
>gi|298247398|ref|ZP_06971203.1| FAD linked oxidase domain protein [Ktedonobacter racemifer DSM
44963]
gi|297550057|gb|EFH83923.1| FAD linked oxidase domain protein [Ktedonobacter racemifer DSM
44963]
Length=531
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/54 (26%), Positives = 28/54 (52%), Gaps = 1/54 (1%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAVS 86
W +L + G+++ P +G+ + Q+FN + + PA + AS DV+ +
Sbjct 62 WVNLGKGLKGELVRPGDGK-YDVAHQLFNPRFDNIKPAGIAYCASPEDVKACMD 114
>gi|336317656|ref|ZP_08572507.1| FAD/FMN-dependent dehydrogenase [Rheinheimera sp. A13L]
gi|335878003|gb|EGM75951.1| FAD/FMN-dependent dehydrogenase [Rheinheimera sp. A13L]
Length=503
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/85 (33%), Positives = 39/85 (46%), Gaps = 5/85 (5%)
Query 1 MSRQTFL---RGAVGAPATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGK 57
M R+ FL A A + F LA D W L +S GQ+L PA+ F
Sbjct 1 MDRRHFLTLSSAAALATVSGCQFSPALALPEATD-WQQLKASFSGQLLFPADA-GFNRFY 58
Query 58 QIFNSNYSGLNPAAVVTVASQADVR 82
+ NS Y + PA + A++ADV+
Sbjct 59 KAANSRYDSVIPAVIARCATRADVQ 83
>gi|254383653|ref|ZP_04999002.1| twin-arginine translocation pathway signal [Streptomyces sp.
Mg1]
gi|194342547|gb|EDX23513.1| twin-arginine translocation pathway signal [Streptomyces sp.
Mg1]
Length=507
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/53 (31%), Positives = 30/53 (57%), Gaps = 1/53 (1%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAV 85
W L +S+ G ++LP + + + +Q+ N+ + + P AVV + DVR A+
Sbjct 37 WERLGASLTGDLVLPGDAQ-YERARQLANAQFDNIYPQAVVYAETPGDVRTAM 88
>gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii
NCTC 11218]
Length=807
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (52%), Gaps = 1/60 (1%)
Query 6 FLRGAVGAPAT-SAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIFNSNY 64
FL G VG T SA+ +I + P +G+A LAS+ G + LP G +++ NY
Sbjct 234 FLEGVVGLDITVSAIVESIQHLSVPWNGYAVLASNTGTMMALPPQGEQDFGMQELTEHNY 293
>gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii
CIP 102972]
gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii
CIP 102972]
Length=807
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (52%), Gaps = 1/60 (1%)
Query 6 FLRGAVGAPAT-SAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIFNSNY 64
FL G VG T SA+ +I + P +G+A LAS+ G + LP G +++ NY
Sbjct 234 FLEGVVGLDITVSAIVESIQHLSVPWNGYAVLASNTGTMMALPPQGEQDFGMQELTEHNY 293
>gi|300782708|ref|YP_003762999.1| FAD-binding dehydrogenase [Amycolatopsis mediterranei U32]
gi|299792222|gb|ADJ42597.1| FAD-binding dehydrogenase [Amycolatopsis mediterranei U32]
gi|340524081|gb|AEK39286.1| FAD-binding dehydrogenase [Amycolatopsis mediterranei S699]
Length=501
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/73 (32%), Positives = 33/73 (46%), Gaps = 1/73 (1%)
Query 13 APATSAVFPTILARATPGDGWASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAV 72
AP PT T W L + G +L P + ++ + K FN + G NP AV
Sbjct 46 APVDPTSTPTATRLPTGPPNWDELRPRLTGGLLRPGS-ESYDTAKHGFNQLFDGNNPVAV 104
Query 73 VTVASQADVRKAV 85
TV+S DV+ +
Sbjct 105 ATVSSAKDVQACL 117
>gi|321478604|gb|EFX89561.1| hypothetical protein DAPPUDRAFT_95105 [Daphnia pulex]
Length=1228
Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 23/64 (36%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query 21 PTILARATPGDGWASLASSI-GGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQA 79
P IL+ P D W L S GG + NG A TS +FNS + L P + T+ + A
Sbjct 1152 PLILSGLDPEDEWVKLEKSFFGGLKVGGRNGDASTSKYPLFNSAAAVLYPTDLNTLTTDA 1211
Query 80 DVRK 83
++K
Sbjct 1212 KLQK 1215
>gi|337769470|emb|CCB78183.1| Twin-arginine translocation pathway signal [Streptomyces cattleya
NRRL 8057]
Length=507
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/53 (27%), Positives = 29/53 (55%), Gaps = 1/53 (1%)
Query 33 WASLASSIGGQVLLPANGRAFTSGKQIFNSNYSGLNPAAVVTVASQADVRKAV 85
W L +++GG ++LP + + + +Q+ N+ + ++P AV S DV +
Sbjct 37 WDQLRAALGGDLVLPGDA-GYDTARQLANAQFDTIHPQAVAYCDSARDVSTCI 88
Lambda K H
0.315 0.127 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131009627400
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40