BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3355c
Length=97
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610491|ref|NP_217872.1| hypothetical protein Rv3355c [Mycob... 182 1e-44
gi|306799328|ref|ZP_07437630.1| hypothetical protein TMFG_02924 ... 181 4e-44
gi|297733013|ref|ZP_06962131.1| hypothetical protein MtubKR_1807... 177 4e-43
gi|15610482|ref|NP_217863.1| hypothetical protein Rv3346c [Mycob... 150 9e-35
gi|167966765|ref|ZP_02549042.1| hypothetical protein MtubH3_0133... 144 3e-33
gi|240169075|ref|ZP_04747734.1| hypothetical protein MkanA1_0716... 143 8e-33
gi|118617102|ref|YP_905434.1| hypothetical protein MUL_1429 [Myc... 143 9e-33
gi|294995885|ref|ZP_06801576.1| hypothetical protein Mtub2_15628... 139 1e-31
gi|41409560|ref|NP_962396.1| hypothetical protein MAP3462c [Myco... 139 1e-31
gi|336459686|gb|EGO38620.1| Protein of unknown function (DUF3017... 138 3e-31
gi|118464798|ref|YP_883458.1| hypothetical protein MAV_4322 [Myc... 138 3e-31
gi|254820264|ref|ZP_05225265.1| hypothetical protein MintA_10066... 137 6e-31
gi|296168836|ref|ZP_06850509.1| conserved hypothetical protein [... 135 2e-30
gi|15827283|ref|NP_301546.1| hypothetical protein ML0675 [Mycoba... 132 2e-29
gi|333991833|ref|YP_004524447.1| hypothetical protein JDM601_319... 127 6e-28
gi|73487016|gb|AAZ76629.1| 3355 protein [Mycobacterium wolinskyi] 123 9e-27
gi|73487003|gb|AAZ76619.1| 3355 protein [Mycobacterium goodii] 122 1e-26
gi|34733388|gb|AAQ81634.1| 3355 [Mycobacterium smegmatis] 119 1e-25
gi|120402558|ref|YP_952387.1| hypothetical protein Mvan_1551 [My... 115 2e-24
gi|342861568|ref|ZP_08718215.1| hypothetical protein MCOL_21886 ... 115 2e-24
gi|108798176|ref|YP_638373.1| hypothetical protein Mmcs_1205 [My... 114 6e-24
gi|40807667|gb|AAR92233.1| 3355 [Mycobacterium fortuitum] 111 4e-23
gi|73487008|gb|AAZ76623.1| 3355 protein [Mycobacterium houstonense] 110 6e-23
gi|90658426|gb|ABD97112.1| 3355 [Mycobacterium senegalense] 109 2e-22
gi|90901925|gb|ABE01849.1| 3355 protein [Mycobacterium porcinum] 105 2e-21
gi|90658420|gb|ABD97107.1| 3355 [Mycobacterium peregrinum] 105 2e-21
gi|145225454|ref|YP_001136132.1| hypothetical protein Mflv_4878 ... 93.2 1e-17
gi|169630770|ref|YP_001704419.1| hypothetical protein MAB_3691c ... 92.0 2e-17
gi|297625894|ref|YP_003687657.1| hypothetical protein PFREUD_068... 67.0 9e-10
gi|111023198|ref|YP_706170.1| hypothetical protein RHA1_ro06235 ... 62.8 2e-08
gi|73486999|gb|AAZ76616.1| 3355 protein [Mycobacterium boenickei] 62.8 2e-08
gi|73487012|gb|AAZ76626.1| 3355 protein [Mycobacterium neworlean... 61.2 4e-08
gi|296394296|ref|YP_003659180.1| hypothetical protein Srot_1889 ... 60.8 6e-08
gi|226365703|ref|YP_002783486.1| hypothetical protein ROP_62940 ... 60.1 1e-07
gi|333921644|ref|YP_004495225.1| hypothetical protein AS9A_3989 ... 58.9 2e-07
gi|302524133|ref|ZP_07276475.1| predicted protein [Streptomyces ... 57.4 7e-07
gi|262201702|ref|YP_003272910.1| hypothetical protein Gbro_1758 ... 55.8 2e-06
gi|296138671|ref|YP_003645914.1| hypothetical protein Tpau_0942 ... 55.1 4e-06
gi|326381930|ref|ZP_08203623.1| hypothetical protein SCNU_03262 ... 51.6 4e-05
gi|312140783|ref|YP_004008119.1| integral membrane protein [Rhod... 51.2 5e-05
gi|134103080|ref|YP_001108741.1| hypothetical protein SACE_6650 ... 51.2 6e-05
gi|325001993|ref|ZP_08123105.1| hypothetical protein PseP1_24666... 50.4 8e-05
gi|256380486|ref|YP_003104146.1| hypothetical protein Amir_6499 ... 50.4 8e-05
gi|257054571|ref|YP_003132403.1| hypothetical protein Svir_05010... 50.4 9e-05
gi|72162968|ref|YP_290625.1| integral membrane protein [Thermobi... 49.7 2e-04
gi|343926624|ref|ZP_08766122.1| hypothetical protein GOALK_067_0... 49.7 2e-04
gi|317508479|ref|ZP_07966147.1| hypothetical protein HMPREF9336_... 49.3 2e-04
gi|319948748|ref|ZP_08022868.1| hypothetical protein ES5_05178 [... 48.9 3e-04
gi|227832339|ref|YP_002834046.1| hypothetical protein cauri_0511... 47.8 5e-04
gi|262183801|ref|ZP_06043222.1| hypothetical protein CaurA7_0740... 47.8 6e-04
>gi|15610491|ref|NP_217872.1| hypothetical protein Rv3355c [Mycobacterium tuberculosis H37Rv]
gi|15842951|ref|NP_337988.1| hypothetical protein MT3463 [Mycobacterium tuberculosis CDC1551]
gi|31794538|ref|NP_857031.1| hypothetical protein Mb3390c [Mycobacterium bovis AF2122/97]
62 more sequence titles
Length=97
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/97 (100%), Positives = 97/97 (100%), Gaps = 0/97 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE
Sbjct 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
>gi|306799328|ref|ZP_07437630.1| hypothetical protein TMFG_02924 [Mycobacterium tuberculosis SUMu006]
gi|308340464|gb|EFP29315.1| hypothetical protein TMFG_02924 [Mycobacterium tuberculosis SUMu006]
Length=97
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 96/97 (99%), Positives = 96/97 (99%), Gaps = 0/97 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MTVRAV RRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE
Sbjct 1 MTVRAVLRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
>gi|297733013|ref|ZP_06962131.1| hypothetical protein MtubKR_18075 [Mycobacterium tuberculosis
KZN R506]
gi|308232432|ref|ZP_07664081.1| hypothetical protein TMAG_03303 [Mycobacterium tuberculosis SUMu001]
gi|308370237|ref|ZP_07666895.1| hypothetical protein TMBG_03825 [Mycobacterium tuberculosis SUMu002]
12 more sequence titles
Length=95
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/95 (99%), Positives = 95/95 (100%), Gaps = 0/95 (0%)
Query 3 VRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERA 62
+RAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERA
Sbjct 1 MRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERA 60
Query 63 GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct 61 GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 95
>gi|15610482|ref|NP_217863.1| hypothetical protein Rv3346c [Mycobacterium tuberculosis H37Rv]
gi|15842943|ref|NP_337980.1| hypothetical protein MT3450 [Mycobacterium tuberculosis CDC1551]
gi|31794529|ref|NP_857022.1| hypothetical protein Mb3378c [Mycobacterium bovis AF2122/97]
66 more sequence titles
Length=85
Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/97 (86%), Positives = 83/97 (86%), Gaps = 12/97 (12%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MTVRAV RRTVGAQWPIL AG NFWRRGALLIGIGVGVAAVLRLVLSEE
Sbjct 1 MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE 48
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct 49 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 85
>gi|167966765|ref|ZP_02549042.1| hypothetical protein MtubH3_01338 [Mycobacterium tuberculosis
H37Ra]
gi|297733003|ref|ZP_06962121.1| hypothetical protein MtubKR_18025 [Mycobacterium tuberculosis
KZN R506]
gi|340628329|ref|YP_004746781.1| hypothetical protein MCAN_33721 [Mycobacterium canettii CIPT
140010059]
gi|340006519|emb|CCC45703.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=83
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/95 (85%), Positives = 81/95 (86%), Gaps = 12/95 (12%)
Query 3 VRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERA 62
+RAV RRTVGAQWPIL AG NFWRRGALLIGIGVGVAAVLRLVLSEERA
Sbjct 1 MRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEERA 48
Query 63 GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct 49 GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 83
>gi|240169075|ref|ZP_04747734.1| hypothetical protein MkanA1_07164 [Mycobacterium kansasii ATCC
12478]
Length=97
Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/97 (79%), Positives = 78/97 (81%), Gaps = 0/97 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT RA+ T AQWPILLVG IF V FVL GANFWRRGALLIGIGVGVAA LRL LS+E
Sbjct 1 MTARAILAHTFRAQWPILLVGLIFTVAFVLVGANFWRRGALLIGIGVGVAAALRLALSDE 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
AGLLVVRSKG DF T V AAMVYIASTIDPLGTG
Sbjct 61 LAGLLVVRSKGTDFTTMAVVGAAMVYIASTIDPLGTG 97
>gi|118617102|ref|YP_905434.1| hypothetical protein MUL_1429 [Mycobacterium ulcerans Agy99]
gi|183981199|ref|YP_001849490.1| hypothetical protein MMAR_1177 [Mycobacterium marinum M]
gi|118569212|gb|ABL03963.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
gi|183174525|gb|ACC39635.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=97
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/97 (78%), Positives = 81/97 (84%), Gaps = 0/97 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MTVR R + AQWPILLVG IFAV F LAGANFWRRG+LLIGIGVGVAA LRLVLS++
Sbjct 1 MTVRDFAGRALRAQWPILLVGLIFAVAFALAGANFWRRGSLLIGIGVGVAAALRLVLSDD 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
RAGLL VRSK DF+T +V AAMVYIASTIDPLGTG
Sbjct 61 RAGLLTVRSKATDFITMTSVGAAMVYIASTIDPLGTG 97
>gi|294995885|ref|ZP_06801576.1| hypothetical protein Mtub2_15628 [Mycobacterium tuberculosis
210]
Length=79
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/91 (85%), Positives = 77/91 (85%), Gaps = 12/91 (13%)
Query 7 FRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV 66
RRTVGAQWPIL AG NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV
Sbjct 1 MRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV 48
Query 67 VRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
VRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct 49 VRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 79
>gi|41409560|ref|NP_962396.1| hypothetical protein MAP3462c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254776750|ref|ZP_05218266.1| hypothetical protein MaviaA2_19076 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41398391|gb|AAS06012.1| hypothetical protein MAP_3462c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=93
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/97 (79%), Positives = 80/97 (83%), Gaps = 4/97 (4%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT R + R AQWPILLVG IFAV L GANFWRRG+LL+GIGVGVAA+LRLVLSEE
Sbjct 1 MTARTLMR----AQWPILLVGLIFAVALALVGANFWRRGSLLLGIGVGVAALLRLVLSEE 56
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
RAGLLVVR KGIDFVTT V AAMVYIA TIDPLGTG
Sbjct 57 RAGLLVVRGKGIDFVTTAMVGAAMVYIAWTIDPLGTG 93
>gi|336459686|gb|EGO38620.1| Protein of unknown function (DUF3017) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=93
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/97 (78%), Positives = 80/97 (83%), Gaps = 4/97 (4%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT R + R AQWPIL+VG IFAV L GANFWRRG+LL+GIGVGVAA+LRLVLSEE
Sbjct 1 MTARTLMR----AQWPILVVGLIFAVALALVGANFWRRGSLLLGIGVGVAALLRLVLSEE 56
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
RAGLLVVR KGIDFVTT V AAMVYIA TIDPLGTG
Sbjct 57 RAGLLVVRGKGIDFVTTAMVGAAMVYIAWTIDPLGTG 93
>gi|118464798|ref|YP_883458.1| hypothetical protein MAV_4322 [Mycobacterium avium 104]
gi|118166085|gb|ABK66982.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=93
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/97 (78%), Positives = 80/97 (83%), Gaps = 4/97 (4%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT R + R AQWPILLVG IFAV L GANFWRRG+LL+GIGVGVAA+LRLVLSEE
Sbjct 1 MTARTLMR----AQWPILLVGLIFAVALALVGANFWRRGSLLLGIGVGVAALLRLVLSEE 56
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
RAG+LVVR KGIDFVTT V AAMVYIA TIDPLGTG
Sbjct 57 RAGVLVVRGKGIDFVTTAMVGAAMVYIAWTIDPLGTG 93
>gi|254820264|ref|ZP_05225265.1| hypothetical protein MintA_10066 [Mycobacterium intracellulare
ATCC 13950]
Length=93
Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/96 (79%), Positives = 78/96 (82%), Gaps = 4/96 (4%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT R V R AQWPILLVG IFA VL GANFWRRG+LLIGIGVGVAA+LRLVLSEE
Sbjct 1 MTARTVLR----AQWPILLVGLIFAAALVLVGANFWRRGSLLIGIGVGVAALLRLVLSEE 56
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RAGLLVVR KGIDF+TT V AAM YIA TIDPLGT
Sbjct 57 RAGLLVVRGKGIDFITTAAVGAAMDYIAWTIDPLGT 92
>gi|296168836|ref|ZP_06850509.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896495|gb|EFG76144.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=93
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/97 (76%), Positives = 78/97 (81%), Gaps = 4/97 (4%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT R+V R AQWPILLVG FA L GANFWRRG+LLIGIGVG+AA LRLVLS+E
Sbjct 1 MTARSVAR----AQWPILLVGLTFATALALVGANFWRRGSLLIGIGVGLAAALRLVLSDE 56
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
R+GLL VRSKGIDFVTT VA AMVYIA TIDPLGTG
Sbjct 57 RSGLLAVRSKGIDFVTTAAVATAMVYIAWTIDPLGTG 93
>gi|15827283|ref|NP_301546.1| hypothetical protein ML0675 [Mycobacterium leprae TN]
gi|221229761|ref|YP_002503177.1| hypothetical protein MLBr_00675 [Mycobacterium leprae Br4923]
gi|2326686|emb|CAB10997.1| hypothetical protein MLCB1779.16c [Mycobacterium leprae]
gi|13092832|emb|CAC30184.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219932868|emb|CAR70769.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=91
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/91 (79%), Positives = 75/91 (83%), Gaps = 0/91 (0%)
Query 7 FRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV 66
R + +QWPILLVG IFA FVL GANFWRRGALLIGIGVGVA VLRLVLS+ERAGLL+
Sbjct 1 MRAALRSQWPILLVGMIFAGAFVLVGANFWRRGALLIGIGVGVATVLRLVLSDERAGLLM 60
Query 67 VRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
VR K ID VTT V AMVYIASTIDPLGTG
Sbjct 61 VRGKVIDLVTTALVGMAMVYIASTIDPLGTG 91
>gi|333991833|ref|YP_004524447.1| hypothetical protein JDM601_3192 [Mycobacterium sp. JDM601]
gi|333487800|gb|AEF37192.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=96
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/93 (76%), Positives = 76/93 (82%), Gaps = 0/93 (0%)
Query 4 RAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAG 63
RA RR V AQWPI+LVG IF FVLAGANFWRRGALLIGIG VAA LRLVLSEERAG
Sbjct 3 RADVRRLVAAQWPIMLVGLIFVAAFVLAGANFWRRGALLIGIGTAVAAALRLVLSEERAG 62
Query 64 LLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
LLV+R +G+DF T T A AMVYIA+T+DPLGT
Sbjct 63 LLVLRDRGLDFATMTTAATAMVYIAATVDPLGT 95
>gi|73487016|gb|AAZ76629.1| 3355 protein [Mycobacterium wolinskyi]
Length=97
Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/96 (67%), Positives = 76/96 (80%), Gaps = 0/96 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT++ R+ QWPIL+VG IF F L A +WRRGAL+IGIGVGVAA LRL L+++
Sbjct 1 MTLKEFARKVFAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGVAAALRLALTDD 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RAGLLVVR KGIDFVTT TV+AA++YIA TIDPLGT
Sbjct 61 RAGLLVVRGKGIDFVTTATVSAAVLYIAWTIDPLGT 96
>gi|73487003|gb|AAZ76619.1| 3355 protein [Mycobacterium goodii]
Length=97
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/96 (67%), Positives = 74/96 (78%), Gaps = 0/96 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT R R+ QWPIL+VG IF F L A +WRRGAL+IGIGVGVAA LRL L++E
Sbjct 1 MTPREFVRKVFAGQWPILVVGLIFVAAFALVVAGYWRRGALVIGIGVGVAAALRLALTDE 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct 61 RAGLLVVRSRAIDFATTATVSAAVLYIAWTIDPLGT 96
>gi|34733388|gb|AAQ81634.1| 3355 [Mycobacterium smegmatis]
Length=97
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/96 (65%), Positives = 74/96 (78%), Gaps = 0/96 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT + R+ QWPIL+VG IF F L A +WRRGAL+IGIGVGVAA LRL L+++
Sbjct 1 MTPKEFARKVFAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGVAAALRLALTDD 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct 61 RAGLLVVRSRAIDFATTATVSAAVLYIAWTIDPLGT 96
>gi|120402558|ref|YP_952387.1| hypothetical protein Mvan_1551 [Mycobacterium vanbaalenii PYR-1]
gi|119955376|gb|ABM12381.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=97
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/97 (60%), Positives = 72/97 (75%), Gaps = 0/97 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MTV+ R+ QWPILLVG F+L A +WRRGAL++ IGV VA+ LRL L E+
Sbjct 1 MTVKQFARKVFAGQWPILLVGLFLVAAFILVAAGYWRRGALVMAIGVAVASGLRLALPED 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
RAGLLVVR++ +DF+TT TV+AAM+YIA TIDPLGT
Sbjct 61 RAGLLVVRTRTVDFLTTATVSAAMLYIAWTIDPLGTS 97
>gi|342861568|ref|ZP_08718215.1| hypothetical protein MCOL_21886 [Mycobacterium colombiense CECT
3035]
gi|342131057|gb|EGT84346.1| hypothetical protein MCOL_21886 [Mycobacterium colombiense CECT
3035]
Length=78
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/77 (80%), Positives = 66/77 (86%), Gaps = 0/77 (0%)
Query 20 VGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVT 79
+G IFA L GANFWRRG+LLIGIGVGVAA+LRLVLSE+RAGLLVVR KGIDF+TT T
Sbjct 1 MGLIFAAALALVGANFWRRGSLLIGIGVGVAALLRLVLSEDRAGLLVVRGKGIDFMTTAT 60
Query 80 VAAAMVYIASTIDPLGT 96
V AAM YIA TIDPLGT
Sbjct 61 VGAAMFYIAWTIDPLGT 77
>gi|108798176|ref|YP_638373.1| hypothetical protein Mmcs_1205 [Mycobacterium sp. MCS]
gi|119867272|ref|YP_937224.1| hypothetical protein Mkms_1222 [Mycobacterium sp. KMS]
gi|126433834|ref|YP_001069525.1| hypothetical protein Mjls_1232 [Mycobacterium sp. JLS]
gi|108768595|gb|ABG07317.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119693361|gb|ABL90434.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126233634|gb|ABN97034.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=97
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/96 (62%), Positives = 71/96 (74%), Gaps = 0/96 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MTV+ R+ QWPIL+VG IF F L A +WRRGAL++ IGVGVAA LR+ L++E
Sbjct 1 MTVKDFARKVFAGQWPILVVGLIFVAAFALVIAGYWRRGALVLAIGVGVAAGLRISLTDE 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RAGLL VRS+ IDF TT TV+A M Y+A TIDPLGT
Sbjct 61 RAGLLAVRSRAIDFATTSTVSAIMFYVAWTIDPLGT 96
>gi|40807667|gb|AAR92233.1| 3355 [Mycobacterium fortuitum]
Length=97
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/96 (67%), Positives = 75/96 (79%), Gaps = 0/96 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MTV+ R+ QWPIL+VG IF FVL A +WRRGAL+IGIGVG AA LRL L++E
Sbjct 1 MTVQEFVRKVFAGQWPILVVGLIFIAAFVLVVAGYWRRGALIIGIGVGAAAALRLALTDE 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct 61 RAGLLVVRSRTIDFATTATVSAAVLYIAWTIDPLGT 96
>gi|73487008|gb|AAZ76623.1| 3355 protein [Mycobacterium houstonense]
Length=97
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/96 (66%), Positives = 74/96 (78%), Gaps = 0/96 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT + R+ V QWPILLVG IF F L A +WRRGAL+IGIGVG AA LRL L+++
Sbjct 1 MTAKEFVRKVVAGQWPILLVGLIFVAAFALVVAGYWRRGALVIGIGVGAAAALRLALTDD 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct 61 RAGLLVVRSRPIDFTTTATVSAAVLYIAWTIDPLGT 96
>gi|90658426|gb|ABD97112.1| 3355 [Mycobacterium senegalense]
Length=97
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/96 (65%), Positives = 75/96 (79%), Gaps = 0/96 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT + R+ V QWPIL+VG IF FVL A +WRRGAL+IGIGVG AA LRL L+++
Sbjct 1 MTAKXFVRKVVAGQWPILVVGLIFIAAFVLVVAGYWRRGALIIGIGVGAAAALRLALTDD 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RAGLLVVRS+ IDF TT TV+AA++YIA +IDPLGT
Sbjct 61 RAGLLVVRSRTIDFATTATVSAAVLYIAWSIDPLGT 96
>gi|90901925|gb|ABE01849.1| 3355 protein [Mycobacterium porcinum]
Length=97
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/96 (63%), Positives = 73/96 (77%), Gaps = 0/96 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MT + ++ V QWPIL+VG IF F L A +WRRGAL+IGIGVG AA LRL L+++
Sbjct 1 MTAKEFVQKVVAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGAAAALRLALTDD 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RAGLLVVRS+ IDF TT TV+A ++YIA TIDPLGT
Sbjct 61 RAGLLVVRSRTIDFATTATVSAVVLYIAWTIDPLGT 96
>gi|90658420|gb|ABD97107.1| 3355 [Mycobacterium peregrinum]
Length=97
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/96 (64%), Positives = 72/96 (75%), Gaps = 0/96 (0%)
Query 1 MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE 60
MTV R+ QWPIL+VG IF F L A +WRRGAL+IGIGVG AA LRL L+++
Sbjct 1 MTVNEFVRKVFAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGAAAALRLALTDD 60
Query 61 RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RAGLLVVRS+ IDF TT TV+A ++YIA TIDPLGT
Sbjct 61 RAGLLVVRSRTIDFTTTATVSAIVLYIAWTIDPLGT 96
>gi|145225454|ref|YP_001136132.1| hypothetical protein Mflv_4878 [Mycobacterium gilvum PYR-GCK]
gi|315445807|ref|YP_004078686.1| hypothetical protein Mspyr1_42940 [Mycobacterium sp. Spyr1]
gi|145217940|gb|ABP47344.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315264110|gb|ADU00852.1| hypothetical protein Mspyr1_42940 [Mycobacterium sp. Spyr1]
Length=95
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/89 (59%), Positives = 64/89 (72%), Gaps = 0/89 (0%)
Query 8 RRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVV 67
R+ +G QWPIL+V F L A +WRRGAL++ IGV VAA LR L E+R GLL V
Sbjct 6 RKILGGQWPILVVALFLVAAFALVAAGYWRRGALVMAIGVAVAAALRTALPEDRVGLLAV 65
Query 68 RSKGIDFVTTVTVAAAMVYIASTIDPLGT 96
RS+ +D VTT +V+AAM+YIA TIDPLGT
Sbjct 66 RSRTVDIVTTASVSAAMLYIAWTIDPLGT 94
>gi|169630770|ref|YP_001704419.1| hypothetical protein MAB_3691c [Mycobacterium abscessus ATCC
19977]
gi|169242737|emb|CAM63765.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=109
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/90 (58%), Positives = 64/90 (72%), Gaps = 0/90 (0%)
Query 8 RRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVV 67
+R QWPIL+V ++F L A+ WRRGAL++GI VG+AA LRLVL+++ AGLL V
Sbjct 20 QRFAREQWPILVVSAVFLAALGLVIADRWRRGALVVGIAVGIAAALRLVLTDDTAGLLAV 79
Query 68 RSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
RSK D VAAAMVY+A TIDPLGTG
Sbjct 80 RSKTFDVGALGAVAAAMVYLALTIDPLGTG 109
>gi|297625894|ref|YP_003687657.1| hypothetical protein PFREUD_06850 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921659|emb|CBL56216.1| Hypothetical protein PFREUD_06850 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length=107
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/82 (44%), Positives = 48/82 (59%), Gaps = 0/82 (0%)
Query 13 AQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGI 72
AQWP+LL + F G + A WRRGA+L+G G+G+A VLRL L AGLLVVR +
Sbjct 24 AQWPLLLCLAFFVAGMAVTAAAHWRRGAVLMGAGLGLAGVLRLFLPPRLAGLLVVRRRWF 83
Query 73 DFVTTVTVAAAMVYIASTIDPL 94
D + + M +A + PL
Sbjct 84 DVLVGIVGGTTMCVLAILVPPL 105
>gi|111023198|ref|YP_706170.1| hypothetical protein RHA1_ro06235 [Rhodococcus jostii RHA1]
gi|110822728|gb|ABG98012.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=94
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/61 (53%), Positives = 41/61 (68%), Gaps = 0/61 (0%)
Query 36 WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLG 95
WRRGA + G+ +AAV RL++ ER GLL VRSK D V V A+V++A +IDPLG
Sbjct 33 WRRGAFVFGVATLLAAVFRLMMPSERVGLLAVRSKPFDVGALVAVGGAIVWLAVSIDPLG 92
Query 96 T 96
T
Sbjct 93 T 93
>gi|73486999|gb|AAZ76616.1| 3355 protein [Mycobacterium boenickei]
Length=72
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/45 (67%), Positives = 38/45 (85%), Gaps = 0/45 (0%)
Query 53 LRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
+RL L+++RAGLLVVRS+ IDF TT TV+A ++YIA TIDPLGT
Sbjct 28 VRLALTDDRAGLLVVRSRTIDFATTATVSAVVLYIAWTIDPLGTS 72
>gi|73487012|gb|AAZ76626.1| 3355 protein [Mycobacterium neworleansense]
Length=66
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/62 (62%), Positives = 47/62 (76%), Gaps = 1/62 (1%)
Query 35 FWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPL 94
+WRRGA G AA+ L L+++RAGLLVVRS+ IDF TT TV+AA++YIA TIDPL
Sbjct 5 YWRRGAXSSDRGGAAAALR-LALTDDRAGLLVVRSRTIDFATTATVSAAVLYIAWTIDPL 63
Query 95 GT 96
GT
Sbjct 64 GT 65
>gi|296394296|ref|YP_003659180.1| hypothetical protein Srot_1889 [Segniliparus rotundus DSM 44985]
gi|296181443|gb|ADG98349.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=112
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/64 (54%), Positives = 43/64 (68%), Gaps = 0/64 (0%)
Query 34 NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDP 93
+ WRRG +IG V VAAVLR VL RAGLL VRS+ D V AA+++++ TI+P
Sbjct 47 DRWRRGGAVIGFAVIVAAVLRAVLPTNRAGLLAVRSRVFDVAVLALVGAAILWVSWTINP 106
Query 94 LGTG 97
LGTG
Sbjct 107 LGTG 110
>gi|226365703|ref|YP_002783486.1| hypothetical protein ROP_62940 [Rhodococcus opacus B4]
gi|226244193|dbj|BAH54541.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=94
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/61 (50%), Positives = 39/61 (64%), Gaps = 0/61 (0%)
Query 36 WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLG 95
WRRGA + G+ +AA RL + ER GLL VRS+ D V V A+V++A +IDPLG
Sbjct 33 WRRGAFVFGVATLLAAAFRLTMPSERVGLLAVRSRAFDVGALVAVGGAIVWLAVSIDPLG 92
Query 96 T 96
T
Sbjct 93 T 93
>gi|333921644|ref|YP_004495225.1| hypothetical protein AS9A_3989 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483865|gb|AEF42425.1| hypothetical protein AS9A_3989 [Amycolicicoccus subflavus DQS3-9A1]
Length=100
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/89 (41%), Positives = 55/89 (62%), Gaps = 0/89 (0%)
Query 9 RTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVR 68
RTV A P+ ++ + + +L ++ WRRGA ++GI +AA RL+L E +AGLLVVR
Sbjct 12 RTVMAHIPLAIIAAFLLLALILVVSDRWRRGAFVVGIATLLAAWFRLILPEVQAGLLVVR 71
Query 69 SKGIDFVTTVTVAAAMVYIASTIDPLGTG 97
S+ D + +V++ +IDPLGTG
Sbjct 72 SRPFDVGALTLMGGTIVWLTLSIDPLGTG 100
>gi|302524133|ref|ZP_07276475.1| predicted protein [Streptomyces sp. AA4]
gi|302433028|gb|EFL04844.1| predicted protein [Streptomyces sp. AA4]
Length=103
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/76 (45%), Positives = 47/76 (62%), Gaps = 0/76 (0%)
Query 16 PILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFV 75
P ++ + AV V A WR GA L+G+ + VA LR VL EERAGLL +R K +D V
Sbjct 19 PFAVILLLLAVAVVRAVQYHWREGAALVGVALFVAGALRAVLPEERAGLLAIRGKIVDIV 78
Query 76 TTVTVAAAMVYIASTI 91
T + AA+++I+ TI
Sbjct 79 TYGALCAAVLFISLTI 94
>gi|262201702|ref|YP_003272910.1| hypothetical protein Gbro_1758 [Gordonia bronchialis DSM 43247]
gi|262085049|gb|ACY21017.1| hypothetical protein Gbro_1758 [Gordonia bronchialis DSM 43247]
Length=107
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/88 (40%), Positives = 49/88 (56%), Gaps = 0/88 (0%)
Query 9 RTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVR 68
R+ Q P LLV + +L + WRRG+ + G + V AVLR + RAGLL VR
Sbjct 19 RSYLVQIPYLLVMAGVVAAALLVLFDRWRRGSFVFGTALLVGAVLRACIPSSRAGLLQVR 78
Query 69 SKGIDFVTTVTVAAAMVYIASTIDPLGT 96
K D V +V M+++A++ID LGT
Sbjct 79 GKFFDVVAMASVGVLMLWLATSIDSLGT 106
>gi|296138671|ref|YP_003645914.1| hypothetical protein Tpau_0942 [Tsukamurella paurometabola DSM
20162]
gi|296026805|gb|ADG77575.1| hypothetical protein Tpau_0942 [Tsukamurella paurometabola DSM
20162]
Length=104
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 43/75 (58%), Gaps = 0/75 (0%)
Query 22 SIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVA 81
++ VG VL G +WRRG + G G G+AAVLR L + R GLL VRS+ D A
Sbjct 29 AVLTVGMVLVGLEYWRRGLAVFGAGTGLAAVLRATLPDRRQGLLRVRSRWFDTTVLAVAA 88
Query 82 AAMVYIASTIDPLGT 96
A++ + TI LGT
Sbjct 89 VAILVVTWTISTLGT 103
>gi|326381930|ref|ZP_08203623.1| hypothetical protein SCNU_03262 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199356|gb|EGD56537.1| hypothetical protein SCNU_03262 [Gordonia neofelifaecis NRRL
B-59395]
Length=118
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/81 (36%), Positives = 46/81 (57%), Gaps = 0/81 (0%)
Query 16 PILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFV 75
P +V ++ AV +L + WRRGA + G + + AV R L R GLL VRS+ D
Sbjct 37 PYYIVLAVIAVAALLVLIDRWRRGAFVFGAAMLLGAVFRAFLPANRTGLLQVRSRAFDIS 96
Query 76 TTVTVAAAMVYIASTIDPLGT 96
+ +++++A++ID LGT
Sbjct 97 AMAVLGGSVLWLATSIDSLGT 117
>gi|312140783|ref|YP_004008119.1| integral membrane protein [Rhodococcus equi 103S]
gi|325675577|ref|ZP_08155261.1| hypothetical protein HMPREF0724_13043 [Rhodococcus equi ATCC
33707]
gi|311890122|emb|CBH49440.1| putative integral membrane protein [Rhodococcus equi 103S]
gi|325553548|gb|EGD23226.1| hypothetical protein HMPREF0724_13043 [Rhodococcus equi ATCC
33707]
Length=91
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/83 (49%), Positives = 54/83 (66%), Gaps = 0/83 (0%)
Query 14 QWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGID 73
WP+L V + A FVL A+ WRRGAL++G + +AA+LR LS +R GLL VR KG D
Sbjct 8 NWPLLAVVLVVAAAFVLVLADRWRRGALVLGGAMVLAALLRAALSPDRVGLLAVRGKGFD 67
Query 74 FVTTVTVAAAMVYIASTIDPLGT 96
V A ++ +A++IDPLGT
Sbjct 68 VAAMAVVGATIIALAASIDPLGT 90
>gi|134103080|ref|YP_001108741.1| hypothetical protein SACE_6650 [Saccharopolyspora erythraea NRRL
2338]
gi|291008966|ref|ZP_06566939.1| hypothetical protein SeryN2_30963 [Saccharopolyspora erythraea
NRRL 2338]
gi|133915703|emb|CAM05816.1| hypothetical protein SACE_6650 [Saccharopolyspora erythraea NRRL
2338]
Length=96
Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/78 (38%), Positives = 48/78 (62%), Gaps = 0/78 (0%)
Query 14 QWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGID 73
+P V + +GF+ WR+G++LIG+ + +AAVLR +L+ E+AGLL +RS+ ID
Sbjct 14 HFPFAAVVLVALIGFLRIAMQHWRQGSVLIGVALVLAAVLRALLTNEQAGLLAIRSRAID 73
Query 74 FVTTVTVAAAMVYIASTI 91
+ + +V +A TI
Sbjct 74 ILLYGGLGVVIVVVAMTI 91
>gi|325001993|ref|ZP_08123105.1| hypothetical protein PseP1_24666 [Pseudonocardia sp. P1]
Length=80
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/67 (41%), Positives = 39/67 (59%), Gaps = 0/67 (0%)
Query 7 FRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV 66
R + A WP+L V +I +G WR G+ +G+ + VAAVLR+VL +R GLL
Sbjct 10 LRARLRAYWPLLTVLAIALIGLQRVATEHWREGSAALGVAMLVAAVLRVVLPPDRVGLLA 69
Query 67 VRSKGID 73
VR + +D
Sbjct 70 VRGRYVD 76
>gi|256380486|ref|YP_003104146.1| hypothetical protein Amir_6499 [Actinosynnema mirum DSM 43827]
gi|255924789|gb|ACU40300.1| hypothetical protein Amir_6499 [Actinosynnema mirum DSM 43827]
Length=99
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 50/85 (59%), Gaps = 0/85 (0%)
Query 7 FRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV 66
+R G P LV + VG V WR G +LIG+ + +AAVLR+++S+ +AGL+
Sbjct 6 WRGAAGQHLPFALVLGVTLVGLVRILQYNWREGVVLIGVALLIAAVLRVLVSDAQAGLIA 65
Query 67 VRSKGIDFVTTVTVAAAMVYIASTI 91
+R +G+D + + A++ +A TI
Sbjct 66 IRGRGVDALLYSAMGLAVIVVAMTI 90
>gi|257054571|ref|YP_003132403.1| hypothetical protein Svir_05010 [Saccharomonospora viridis DSM
43017]
gi|256584443|gb|ACU95576.1| hypothetical protein Svir_05010 [Saccharomonospora viridis DSM
43017]
Length=106
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (37%), Positives = 47/85 (56%), Gaps = 0/85 (0%)
Query 7 FRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV 66
R +V P V ++ A G + WR GA+LIG + VAAVLR LS ER GLL
Sbjct 16 HRDSVLVHLPFAAVLALVAFGMLRIAMYHWREGAVLIGGALLVAAVLRAALSHERTGLLA 75
Query 67 VRSKGIDFVTTVTVAAAMVYIASTI 91
+R++ +D ++ + +++ A TI
Sbjct 76 IRTRTVDVLSYAGLGLLILFTALTI 100
>gi|72162968|ref|YP_290625.1| integral membrane protein [Thermobifida fusca YX]
gi|71916700|gb|AAZ56602.1| putative integral membrane protein [Thermobifida fusca YX]
Length=175
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (42%), Positives = 46/75 (62%), Gaps = 0/75 (0%)
Query 14 QWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGID 73
Q P LLV + + G V+ A ++RG +I + + AVLR VL ER G+L VRS+ +D
Sbjct 95 QVPYLLVLATMSAGIVVVAAAHFKRGPAIIAGSLLLGAVLRAVLPTERVGMLAVRSRWVD 154
Query 74 FVTTVTVAAAMVYIA 88
VT VT+A ++ +A
Sbjct 155 VVTFVTLAVLLIVLA 169
>gi|343926624|ref|ZP_08766122.1| hypothetical protein GOALK_067_00070 [Gordonia alkanivorans NBRC
16433]
gi|343763376|dbj|GAA13048.1| hypothetical protein GOALK_067_00070 [Gordonia alkanivorans NBRC
16433]
Length=134
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/88 (39%), Positives = 47/88 (54%), Gaps = 0/88 (0%)
Query 9 RTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVR 68
R V Q P LLV +L + WRRG+ + G + V A+LR + +AGLL VR
Sbjct 46 RAVLVQIPYLLVMLGVLAAALLVMFDRWRRGSFVFGAALLVGALLRAFIPSSQAGLLQVR 105
Query 69 SKGIDFVTTVTVAAAMVYIASTIDPLGT 96
K D TV M+++A++ID LGT
Sbjct 106 GKLFDVSVMATVGGVMLWLATSIDSLGT 133
>gi|317508479|ref|ZP_07966147.1| hypothetical protein HMPREF9336_02519 [Segniliparus rugosus ATCC
BAA-974]
gi|316253227|gb|EFV12629.1| hypothetical protein HMPREF9336_02519 [Segniliparus rugosus ATCC
BAA-974]
Length=115
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/63 (43%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 34 NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDP 93
+ WRRG +IG V AV R L R GLL VR + D + V AA+++++ TI+P
Sbjct 50 DRWRRGGAVIGAAVLAGAVFRAALPTNRVGLLAVRGRLFDVLALALVGAAILWVSWTINP 109
Query 94 LGT 96
LGT
Sbjct 110 LGT 112
>gi|319948748|ref|ZP_08022868.1| hypothetical protein ES5_05178 [Dietzia cinnamea P4]
gi|319437581|gb|EFV92581.1| hypothetical protein ES5_05178 [Dietzia cinnamea P4]
Length=87
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/87 (48%), Positives = 56/87 (65%), Gaps = 4/87 (4%)
Query 13 AQWPILLV--GSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSK 70
AQWP+ LV G + A+GFV+ WRRGA L+G+ AA LR VL +ERA LL VR K
Sbjct 3 AQWPLALVLAGVVVALGFVVL--ERWRRGAFLLGLVALAAATLRAVLPDERARLLGVRGK 60
Query 71 GIDFVTTVTVAAAMVYIASTIDPLGTG 97
D V + A ++++A+++D LGTG
Sbjct 61 KFDVAFYVGIGAVILWLATSVDSLGTG 87
>gi|227832339|ref|YP_002834046.1| hypothetical protein cauri_0511 [Corynebacterium aurimucosum
ATCC 700975]
gi|227453355|gb|ACP32108.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length=140
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/87 (40%), Positives = 48/87 (56%), Gaps = 7/87 (8%)
Query 14 QWPILLVGSIFAVGFVLAGA----NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRS 69
QW L +G +F V V++G WRR LL+G + AV+RL R G+L VRS
Sbjct 57 QW--LAIG-LFVVAVVVSGFYAVFEHWRRATLLLGGALMWLAVVRLTCDSSRVGVLAVRS 113
Query 70 KGIDFVTTVTVAAAMVYIASTIDPLGT 96
+ D T + AAM ++A +ID LG+
Sbjct 114 RRFDACFTGILGAAMAFLAFSIDALGS 140
>gi|262183801|ref|ZP_06043222.1| hypothetical protein CaurA7_07408 [Corynebacterium aurimucosum
ATCC 700975]
Length=104
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/87 (40%), Positives = 48/87 (56%), Gaps = 7/87 (8%)
Query 14 QWPILLVGSIFAVGFVLAGA----NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRS 69
QW L +G +F V V++G WRR LL+G + AV+RL R G+L VRS
Sbjct 21 QW--LAIG-LFVVAVVVSGFYAVFEHWRRATLLLGGALMWLAVVRLTCDSSRVGVLAVRS 77
Query 70 KGIDFVTTVTVAAAMVYIASTIDPLGT 96
+ D T + AAM ++A +ID LG+
Sbjct 78 RRFDACFTGILGAAMAFLAFSIDALGS 104
Lambda K H
0.329 0.143 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130655526400
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40