BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3355c

Length=97
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610491|ref|NP_217872.1|  hypothetical protein Rv3355c [Mycob...   182    1e-44
gi|306799328|ref|ZP_07437630.1|  hypothetical protein TMFG_02924 ...   181    4e-44
gi|297733013|ref|ZP_06962131.1|  hypothetical protein MtubKR_1807...   177    4e-43
gi|15610482|ref|NP_217863.1|  hypothetical protein Rv3346c [Mycob...   150    9e-35
gi|167966765|ref|ZP_02549042.1|  hypothetical protein MtubH3_0133...   144    3e-33
gi|240169075|ref|ZP_04747734.1|  hypothetical protein MkanA1_0716...   143    8e-33
gi|118617102|ref|YP_905434.1|  hypothetical protein MUL_1429 [Myc...   143    9e-33
gi|294995885|ref|ZP_06801576.1|  hypothetical protein Mtub2_15628...   139    1e-31
gi|41409560|ref|NP_962396.1|  hypothetical protein MAP3462c [Myco...   139    1e-31
gi|336459686|gb|EGO38620.1|  Protein of unknown function (DUF3017...   138    3e-31
gi|118464798|ref|YP_883458.1|  hypothetical protein MAV_4322 [Myc...   138    3e-31
gi|254820264|ref|ZP_05225265.1|  hypothetical protein MintA_10066...   137    6e-31
gi|296168836|ref|ZP_06850509.1|  conserved hypothetical protein [...   135    2e-30
gi|15827283|ref|NP_301546.1|  hypothetical protein ML0675 [Mycoba...   132    2e-29
gi|333991833|ref|YP_004524447.1|  hypothetical protein JDM601_319...   127    6e-28
gi|73487016|gb|AAZ76629.1|  3355 protein [Mycobacterium wolinskyi]     123    9e-27
gi|73487003|gb|AAZ76619.1|  3355 protein [Mycobacterium goodii]        122    1e-26
gi|34733388|gb|AAQ81634.1|  3355 [Mycobacterium smegmatis]             119    1e-25
gi|120402558|ref|YP_952387.1|  hypothetical protein Mvan_1551 [My...   115    2e-24
gi|342861568|ref|ZP_08718215.1|  hypothetical protein MCOL_21886 ...   115    2e-24
gi|108798176|ref|YP_638373.1|  hypothetical protein Mmcs_1205 [My...   114    6e-24
gi|40807667|gb|AAR92233.1|  3355 [Mycobacterium fortuitum]             111    4e-23
gi|73487008|gb|AAZ76623.1|  3355 protein [Mycobacterium houstonense]   110    6e-23
gi|90658426|gb|ABD97112.1|  3355 [Mycobacterium senegalense]           109    2e-22
gi|90901925|gb|ABE01849.1|  3355 protein [Mycobacterium porcinum]      105    2e-21
gi|90658420|gb|ABD97107.1|  3355 [Mycobacterium peregrinum]            105    2e-21
gi|145225454|ref|YP_001136132.1|  hypothetical protein Mflv_4878 ...  93.2    1e-17
gi|169630770|ref|YP_001704419.1|  hypothetical protein MAB_3691c ...  92.0    2e-17
gi|297625894|ref|YP_003687657.1|  hypothetical protein PFREUD_068...  67.0    9e-10
gi|111023198|ref|YP_706170.1|  hypothetical protein RHA1_ro06235 ...  62.8    2e-08
gi|73486999|gb|AAZ76616.1|  3355 protein [Mycobacterium boenickei]    62.8    2e-08
gi|73487012|gb|AAZ76626.1|  3355 protein [Mycobacterium neworlean...  61.2    4e-08
gi|296394296|ref|YP_003659180.1|  hypothetical protein Srot_1889 ...  60.8    6e-08
gi|226365703|ref|YP_002783486.1|  hypothetical protein ROP_62940 ...  60.1    1e-07
gi|333921644|ref|YP_004495225.1|  hypothetical protein AS9A_3989 ...  58.9    2e-07
gi|302524133|ref|ZP_07276475.1|  predicted protein [Streptomyces ...  57.4    7e-07
gi|262201702|ref|YP_003272910.1|  hypothetical protein Gbro_1758 ...  55.8    2e-06
gi|296138671|ref|YP_003645914.1|  hypothetical protein Tpau_0942 ...  55.1    4e-06
gi|326381930|ref|ZP_08203623.1|  hypothetical protein SCNU_03262 ...  51.6    4e-05
gi|312140783|ref|YP_004008119.1|  integral membrane protein [Rhod...  51.2    5e-05
gi|134103080|ref|YP_001108741.1|  hypothetical protein SACE_6650 ...  51.2    6e-05
gi|325001993|ref|ZP_08123105.1|  hypothetical protein PseP1_24666...  50.4    8e-05
gi|256380486|ref|YP_003104146.1|  hypothetical protein Amir_6499 ...  50.4    8e-05
gi|257054571|ref|YP_003132403.1|  hypothetical protein Svir_05010...  50.4    9e-05
gi|72162968|ref|YP_290625.1|  integral membrane protein [Thermobi...  49.7    2e-04
gi|343926624|ref|ZP_08766122.1|  hypothetical protein GOALK_067_0...  49.7    2e-04
gi|317508479|ref|ZP_07966147.1|  hypothetical protein HMPREF9336_...  49.3    2e-04
gi|319948748|ref|ZP_08022868.1|  hypothetical protein ES5_05178 [...  48.9    3e-04
gi|227832339|ref|YP_002834046.1|  hypothetical protein cauri_0511...  47.8    5e-04
gi|262183801|ref|ZP_06043222.1|  hypothetical protein CaurA7_0740...  47.8    6e-04


>gi|15610491|ref|NP_217872.1| hypothetical protein Rv3355c [Mycobacterium tuberculosis H37Rv]
 gi|15842951|ref|NP_337988.1| hypothetical protein MT3463 [Mycobacterium tuberculosis CDC1551]
 gi|31794538|ref|NP_857031.1| hypothetical protein Mb3390c [Mycobacterium bovis AF2122/97]
 62 more sequence titles
 Length=97

 Score =  182 bits (463),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%), Gaps = 0/97 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE
Sbjct  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97


>gi|306799328|ref|ZP_07437630.1| hypothetical protein TMFG_02924 [Mycobacterium tuberculosis SUMu006]
 gi|308340464|gb|EFP29315.1| hypothetical protein TMFG_02924 [Mycobacterium tuberculosis SUMu006]
Length=97

 Score =  181 bits (458),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 96/97 (99%), Positives = 96/97 (99%), Gaps = 0/97 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MTVRAV RRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE
Sbjct  1   MTVRAVLRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97


>gi|297733013|ref|ZP_06962131.1| hypothetical protein MtubKR_18075 [Mycobacterium tuberculosis 
KZN R506]
 gi|308232432|ref|ZP_07664081.1| hypothetical protein TMAG_03303 [Mycobacterium tuberculosis SUMu001]
 gi|308370237|ref|ZP_07666895.1| hypothetical protein TMBG_03825 [Mycobacterium tuberculosis SUMu002]
 12 more sequence titles
 Length=95

 Score =  177 bits (450),  Expect = 4e-43, Method: Compositional matrix adjust.
 Identities = 94/95 (99%), Positives = 95/95 (100%), Gaps = 0/95 (0%)

Query  3   VRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERA  62
           +RAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERA
Sbjct  1   MRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERA  60

Query  63  GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct  61  GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  95


>gi|15610482|ref|NP_217863.1| hypothetical protein Rv3346c [Mycobacterium tuberculosis H37Rv]
 gi|15842943|ref|NP_337980.1| hypothetical protein MT3450 [Mycobacterium tuberculosis CDC1551]
 gi|31794529|ref|NP_857022.1| hypothetical protein Mb3378c [Mycobacterium bovis AF2122/97]
 66 more sequence titles
 Length=85

 Score =  150 bits (378),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 83/97 (86%), Positives = 83/97 (86%), Gaps = 12/97 (12%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MTVRAV RRTVGAQWPIL            AG NFWRRGALLIGIGVGVAAVLRLVLSEE
Sbjct  1   MTVRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEE  48

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct  49  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  85


>gi|167966765|ref|ZP_02549042.1| hypothetical protein MtubH3_01338 [Mycobacterium tuberculosis 
H37Ra]
 gi|297733003|ref|ZP_06962121.1| hypothetical protein MtubKR_18025 [Mycobacterium tuberculosis 
KZN R506]
 gi|340628329|ref|YP_004746781.1| hypothetical protein MCAN_33721 [Mycobacterium canettii CIPT 
140010059]
 gi|340006519|emb|CCC45703.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=83

 Score =  144 bits (364),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 80/95 (85%), Positives = 81/95 (86%), Gaps = 12/95 (12%)

Query  3   VRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERA  62
           +RAV RRTVGAQWPIL            AG NFWRRGALLIGIGVGVAAVLRLVLSEERA
Sbjct  1   MRAVLRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEERA  48

Query  63  GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct  49  GLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  83


>gi|240169075|ref|ZP_04747734.1| hypothetical protein MkanA1_07164 [Mycobacterium kansasii ATCC 
12478]
Length=97

 Score =  143 bits (361),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 76/97 (79%), Positives = 78/97 (81%), Gaps = 0/97 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT RA+   T  AQWPILLVG IF V FVL GANFWRRGALLIGIGVGVAA LRL LS+E
Sbjct  1   MTARAILAHTFRAQWPILLVGLIFTVAFVLVGANFWRRGALLIGIGVGVAAALRLALSDE  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
            AGLLVVRSKG DF T   V AAMVYIASTIDPLGTG
Sbjct  61  LAGLLVVRSKGTDFTTMAVVGAAMVYIASTIDPLGTG  97


>gi|118617102|ref|YP_905434.1| hypothetical protein MUL_1429 [Mycobacterium ulcerans Agy99]
 gi|183981199|ref|YP_001849490.1| hypothetical protein MMAR_1177 [Mycobacterium marinum M]
 gi|118569212|gb|ABL03963.1| conserved hypothetical membrane protein [Mycobacterium ulcerans 
Agy99]
 gi|183174525|gb|ACC39635.1| conserved hypothetical membrane protein [Mycobacterium marinum 
M]
Length=97

 Score =  143 bits (360),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 75/97 (78%), Positives = 81/97 (84%), Gaps = 0/97 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MTVR    R + AQWPILLVG IFAV F LAGANFWRRG+LLIGIGVGVAA LRLVLS++
Sbjct  1   MTVRDFAGRALRAQWPILLVGLIFAVAFALAGANFWRRGSLLIGIGVGVAAALRLVLSDD  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           RAGLL VRSK  DF+T  +V AAMVYIASTIDPLGTG
Sbjct  61  RAGLLTVRSKATDFITMTSVGAAMVYIASTIDPLGTG  97


>gi|294995885|ref|ZP_06801576.1| hypothetical protein Mtub2_15628 [Mycobacterium tuberculosis 
210]
Length=79

 Score =  139 bits (351),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 77/91 (85%), Positives = 77/91 (85%), Gaps = 12/91 (13%)

Query  7   FRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV  66
            RRTVGAQWPIL            AG NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV
Sbjct  1   MRRTVGAQWPIL------------AGVNFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV  48

Query  67  VRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           VRSKGIDFVTTVTVAAAMVYIASTIDPLGTG
Sbjct  49  VRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  79


>gi|41409560|ref|NP_962396.1| hypothetical protein MAP3462c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|254776750|ref|ZP_05218266.1| hypothetical protein MaviaA2_19076 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41398391|gb|AAS06012.1| hypothetical protein MAP_3462c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=93

 Score =  139 bits (351),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 76/97 (79%), Positives = 80/97 (83%), Gaps = 4/97 (4%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT R + R    AQWPILLVG IFAV   L GANFWRRG+LL+GIGVGVAA+LRLVLSEE
Sbjct  1   MTARTLMR----AQWPILLVGLIFAVALALVGANFWRRGSLLLGIGVGVAALLRLVLSEE  56

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           RAGLLVVR KGIDFVTT  V AAMVYIA TIDPLGTG
Sbjct  57  RAGLLVVRGKGIDFVTTAMVGAAMVYIAWTIDPLGTG  93


>gi|336459686|gb|EGO38620.1| Protein of unknown function (DUF3017) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=93

 Score =  138 bits (347),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 75/97 (78%), Positives = 80/97 (83%), Gaps = 4/97 (4%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT R + R    AQWPIL+VG IFAV   L GANFWRRG+LL+GIGVGVAA+LRLVLSEE
Sbjct  1   MTARTLMR----AQWPILVVGLIFAVALALVGANFWRRGSLLLGIGVGVAALLRLVLSEE  56

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           RAGLLVVR KGIDFVTT  V AAMVYIA TIDPLGTG
Sbjct  57  RAGLLVVRGKGIDFVTTAMVGAAMVYIAWTIDPLGTG  93


>gi|118464798|ref|YP_883458.1| hypothetical protein MAV_4322 [Mycobacterium avium 104]
 gi|118166085|gb|ABK66982.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=93

 Score =  138 bits (347),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 75/97 (78%), Positives = 80/97 (83%), Gaps = 4/97 (4%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT R + R    AQWPILLVG IFAV   L GANFWRRG+LL+GIGVGVAA+LRLVLSEE
Sbjct  1   MTARTLMR----AQWPILLVGLIFAVALALVGANFWRRGSLLLGIGVGVAALLRLVLSEE  56

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           RAG+LVVR KGIDFVTT  V AAMVYIA TIDPLGTG
Sbjct  57  RAGVLVVRGKGIDFVTTAMVGAAMVYIAWTIDPLGTG  93


>gi|254820264|ref|ZP_05225265.1| hypothetical protein MintA_10066 [Mycobacterium intracellulare 
ATCC 13950]
Length=93

 Score =  137 bits (345),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 75/96 (79%), Positives = 78/96 (82%), Gaps = 4/96 (4%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT R V R    AQWPILLVG IFA   VL GANFWRRG+LLIGIGVGVAA+LRLVLSEE
Sbjct  1   MTARTVLR----AQWPILLVGLIFAAALVLVGANFWRRGSLLIGIGVGVAALLRLVLSEE  56

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RAGLLVVR KGIDF+TT  V AAM YIA TIDPLGT
Sbjct  57  RAGLLVVRGKGIDFITTAAVGAAMDYIAWTIDPLGT  92


>gi|296168836|ref|ZP_06850509.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295896495|gb|EFG76144.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=93

 Score =  135 bits (340),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 73/97 (76%), Positives = 78/97 (81%), Gaps = 4/97 (4%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT R+V R    AQWPILLVG  FA    L GANFWRRG+LLIGIGVG+AA LRLVLS+E
Sbjct  1   MTARSVAR----AQWPILLVGLTFATALALVGANFWRRGSLLIGIGVGLAAALRLVLSDE  56

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           R+GLL VRSKGIDFVTT  VA AMVYIA TIDPLGTG
Sbjct  57  RSGLLAVRSKGIDFVTTAAVATAMVYIAWTIDPLGTG  93


>gi|15827283|ref|NP_301546.1| hypothetical protein ML0675 [Mycobacterium leprae TN]
 gi|221229761|ref|YP_002503177.1| hypothetical protein MLBr_00675 [Mycobacterium leprae Br4923]
 gi|2326686|emb|CAB10997.1| hypothetical protein MLCB1779.16c [Mycobacterium leprae]
 gi|13092832|emb|CAC30184.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932868|emb|CAR70769.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=91

 Score =  132 bits (332),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 71/91 (79%), Positives = 75/91 (83%), Gaps = 0/91 (0%)

Query  7   FRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV  66
            R  + +QWPILLVG IFA  FVL GANFWRRGALLIGIGVGVA VLRLVLS+ERAGLL+
Sbjct  1   MRAALRSQWPILLVGMIFAGAFVLVGANFWRRGALLIGIGVGVATVLRLVLSDERAGLLM  60

Query  67  VRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           VR K ID VTT  V  AMVYIASTIDPLGTG
Sbjct  61  VRGKVIDLVTTALVGMAMVYIASTIDPLGTG  91


>gi|333991833|ref|YP_004524447.1| hypothetical protein JDM601_3192 [Mycobacterium sp. JDM601]
 gi|333487800|gb|AEF37192.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=96

 Score =  127 bits (319),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 70/93 (76%), Positives = 76/93 (82%), Gaps = 0/93 (0%)

Query  4   RAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAG  63
           RA  RR V AQWPI+LVG IF   FVLAGANFWRRGALLIGIG  VAA LRLVLSEERAG
Sbjct  3   RADVRRLVAAQWPIMLVGLIFVAAFVLAGANFWRRGALLIGIGTAVAAALRLVLSEERAG  62

Query  64  LLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           LLV+R +G+DF T  T A AMVYIA+T+DPLGT
Sbjct  63  LLVLRDRGLDFATMTTAATAMVYIAATVDPLGT  95


>gi|73487016|gb|AAZ76629.1| 3355 protein [Mycobacterium wolinskyi]
Length=97

 Score =  123 bits (309),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 64/96 (67%), Positives = 76/96 (80%), Gaps = 0/96 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT++   R+    QWPIL+VG IF   F L  A +WRRGAL+IGIGVGVAA LRL L+++
Sbjct  1   MTLKEFARKVFAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGVAAALRLALTDD  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RAGLLVVR KGIDFVTT TV+AA++YIA TIDPLGT
Sbjct  61  RAGLLVVRGKGIDFVTTATVSAAVLYIAWTIDPLGT  96


>gi|73487003|gb|AAZ76619.1| 3355 protein [Mycobacterium goodii]
Length=97

 Score =  122 bits (307),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 64/96 (67%), Positives = 74/96 (78%), Gaps = 0/96 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT R   R+    QWPIL+VG IF   F L  A +WRRGAL+IGIGVGVAA LRL L++E
Sbjct  1   MTPREFVRKVFAGQWPILVVGLIFVAAFALVVAGYWRRGALVIGIGVGVAAALRLALTDE  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRAIDFATTATVSAAVLYIAWTIDPLGT  96


>gi|34733388|gb|AAQ81634.1| 3355 [Mycobacterium smegmatis]
Length=97

 Score =  119 bits (299),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 62/96 (65%), Positives = 74/96 (78%), Gaps = 0/96 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT +   R+    QWPIL+VG IF   F L  A +WRRGAL+IGIGVGVAA LRL L+++
Sbjct  1   MTPKEFARKVFAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGVAAALRLALTDD  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRAIDFATTATVSAAVLYIAWTIDPLGT  96


>gi|120402558|ref|YP_952387.1| hypothetical protein Mvan_1551 [Mycobacterium vanbaalenii PYR-1]
 gi|119955376|gb|ABM12381.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=97

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 58/97 (60%), Positives = 72/97 (75%), Gaps = 0/97 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MTV+   R+    QWPILLVG      F+L  A +WRRGAL++ IGV VA+ LRL L E+
Sbjct  1   MTVKQFARKVFAGQWPILLVGLFLVAAFILVAAGYWRRGALVMAIGVAVASGLRLALPED  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           RAGLLVVR++ +DF+TT TV+AAM+YIA TIDPLGT 
Sbjct  61  RAGLLVVRTRTVDFLTTATVSAAMLYIAWTIDPLGTS  97


>gi|342861568|ref|ZP_08718215.1| hypothetical protein MCOL_21886 [Mycobacterium colombiense CECT 
3035]
 gi|342131057|gb|EGT84346.1| hypothetical protein MCOL_21886 [Mycobacterium colombiense CECT 
3035]
Length=78

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 61/77 (80%), Positives = 66/77 (86%), Gaps = 0/77 (0%)

Query  20  VGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVT  79
           +G IFA    L GANFWRRG+LLIGIGVGVAA+LRLVLSE+RAGLLVVR KGIDF+TT T
Sbjct  1   MGLIFAAALALVGANFWRRGSLLIGIGVGVAALLRLVLSEDRAGLLVVRGKGIDFMTTAT  60

Query  80  VAAAMVYIASTIDPLGT  96
           V AAM YIA TIDPLGT
Sbjct  61  VGAAMFYIAWTIDPLGT  77


>gi|108798176|ref|YP_638373.1| hypothetical protein Mmcs_1205 [Mycobacterium sp. MCS]
 gi|119867272|ref|YP_937224.1| hypothetical protein Mkms_1222 [Mycobacterium sp. KMS]
 gi|126433834|ref|YP_001069525.1| hypothetical protein Mjls_1232 [Mycobacterium sp. JLS]
 gi|108768595|gb|ABG07317.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119693361|gb|ABL90434.1| conserved hypothetical protein [Mycobacterium sp. KMS]
 gi|126233634|gb|ABN97034.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=97

 Score =  114 bits (284),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 59/96 (62%), Positives = 71/96 (74%), Gaps = 0/96 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MTV+   R+    QWPIL+VG IF   F L  A +WRRGAL++ IGVGVAA LR+ L++E
Sbjct  1   MTVKDFARKVFAGQWPILVVGLIFVAAFALVIAGYWRRGALVLAIGVGVAAGLRISLTDE  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RAGLL VRS+ IDF TT TV+A M Y+A TIDPLGT
Sbjct  61  RAGLLAVRSRAIDFATTSTVSAIMFYVAWTIDPLGT  96


>gi|40807667|gb|AAR92233.1| 3355 [Mycobacterium fortuitum]
Length=97

 Score =  111 bits (277),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 64/96 (67%), Positives = 75/96 (79%), Gaps = 0/96 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MTV+   R+    QWPIL+VG IF   FVL  A +WRRGAL+IGIGVG AA LRL L++E
Sbjct  1   MTVQEFVRKVFAGQWPILVVGLIFIAAFVLVVAGYWRRGALIIGIGVGAAAALRLALTDE  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRTIDFATTATVSAAVLYIAWTIDPLGT  96


>gi|73487008|gb|AAZ76623.1| 3355 protein [Mycobacterium houstonense]
Length=97

 Score =  110 bits (275),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 63/96 (66%), Positives = 74/96 (78%), Gaps = 0/96 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT +   R+ V  QWPILLVG IF   F L  A +WRRGAL+IGIGVG AA LRL L+++
Sbjct  1   MTAKEFVRKVVAGQWPILLVGLIFVAAFALVVAGYWRRGALVIGIGVGAAAALRLALTDD  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RAGLLVVRS+ IDF TT TV+AA++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRPIDFTTTATVSAAVLYIAWTIDPLGT  96


>gi|90658426|gb|ABD97112.1| 3355 [Mycobacterium senegalense]
Length=97

 Score =  109 bits (272),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 62/96 (65%), Positives = 75/96 (79%), Gaps = 0/96 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT +   R+ V  QWPIL+VG IF   FVL  A +WRRGAL+IGIGVG AA LRL L+++
Sbjct  1   MTAKXFVRKVVAGQWPILVVGLIFIAAFVLVVAGYWRRGALIIGIGVGAAAALRLALTDD  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RAGLLVVRS+ IDF TT TV+AA++YIA +IDPLGT
Sbjct  61  RAGLLVVRSRTIDFATTATVSAAVLYIAWSIDPLGT  96


>gi|90901925|gb|ABE01849.1| 3355 protein [Mycobacterium porcinum]
Length=97

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 60/96 (63%), Positives = 73/96 (77%), Gaps = 0/96 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MT +   ++ V  QWPIL+VG IF   F L  A +WRRGAL+IGIGVG AA LRL L+++
Sbjct  1   MTAKEFVQKVVAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGAAAALRLALTDD  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RAGLLVVRS+ IDF TT TV+A ++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRTIDFATTATVSAVVLYIAWTIDPLGT  96


>gi|90658420|gb|ABD97107.1| 3355 [Mycobacterium peregrinum]
Length=97

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 61/96 (64%), Positives = 72/96 (75%), Gaps = 0/96 (0%)

Query  1   MTVRAVFRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEE  60
           MTV    R+    QWPIL+VG IF   F L  A +WRRGAL+IGIGVG AA LRL L+++
Sbjct  1   MTVNEFVRKVFAGQWPILVVGLIFIAAFALVVAGYWRRGALVIGIGVGAAAALRLALTDD  60

Query  61  RAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RAGLLVVRS+ IDF TT TV+A ++YIA TIDPLGT
Sbjct  61  RAGLLVVRSRTIDFTTTATVSAIVLYIAWTIDPLGT  96


>gi|145225454|ref|YP_001136132.1| hypothetical protein Mflv_4878 [Mycobacterium gilvum PYR-GCK]
 gi|315445807|ref|YP_004078686.1| hypothetical protein Mspyr1_42940 [Mycobacterium sp. Spyr1]
 gi|145217940|gb|ABP47344.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315264110|gb|ADU00852.1| hypothetical protein Mspyr1_42940 [Mycobacterium sp. Spyr1]
Length=95

 Score = 93.2 bits (230),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 52/89 (59%), Positives = 64/89 (72%), Gaps = 0/89 (0%)

Query  8   RRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVV  67
           R+ +G QWPIL+V       F L  A +WRRGAL++ IGV VAA LR  L E+R GLL V
Sbjct  6   RKILGGQWPILVVALFLVAAFALVAAGYWRRGALVMAIGVAVAAALRTALPEDRVGLLAV  65

Query  68  RSKGIDFVTTVTVAAAMVYIASTIDPLGT  96
           RS+ +D VTT +V+AAM+YIA TIDPLGT
Sbjct  66  RSRTVDIVTTASVSAAMLYIAWTIDPLGT  94


>gi|169630770|ref|YP_001704419.1| hypothetical protein MAB_3691c [Mycobacterium abscessus ATCC 
19977]
 gi|169242737|emb|CAM63765.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=109

 Score = 92.0 bits (227),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 52/90 (58%), Positives = 64/90 (72%), Gaps = 0/90 (0%)

Query  8    RRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVV  67
            +R    QWPIL+V ++F     L  A+ WRRGAL++GI VG+AA LRLVL+++ AGLL V
Sbjct  20   QRFAREQWPILVVSAVFLAALGLVIADRWRRGALVVGIAVGIAAALRLVLTDDTAGLLAV  79

Query  68   RSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
            RSK  D      VAAAMVY+A TIDPLGTG
Sbjct  80   RSKTFDVGALGAVAAAMVYLALTIDPLGTG  109


>gi|297625894|ref|YP_003687657.1| hypothetical protein PFREUD_06850 [Propionibacterium freudenreichii 
subsp. shermanii CIRM-BIA1]
 gi|296921659|emb|CBL56216.1| Hypothetical protein PFREUD_06850 [Propionibacterium freudenreichii 
subsp. shermanii CIRM-BIA1]
Length=107

 Score = 67.0 bits (162),  Expect = 9e-10, Method: Compositional matrix adjust.
 Identities = 36/82 (44%), Positives = 48/82 (59%), Gaps = 0/82 (0%)

Query  13   AQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGI  72
            AQWP+LL  + F  G  +  A  WRRGA+L+G G+G+A VLRL L    AGLLVVR +  
Sbjct  24   AQWPLLLCLAFFVAGMAVTAAAHWRRGAVLMGAGLGLAGVLRLFLPPRLAGLLVVRRRWF  83

Query  73   DFVTTVTVAAAMVYIASTIDPL  94
            D +  +     M  +A  + PL
Sbjct  84   DVLVGIVGGTTMCVLAILVPPL  105


>gi|111023198|ref|YP_706170.1| hypothetical protein RHA1_ro06235 [Rhodococcus jostii RHA1]
 gi|110822728|gb|ABG98012.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=94

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 41/61 (68%), Gaps = 0/61 (0%)

Query  36  WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLG  95
           WRRGA + G+   +AAV RL++  ER GLL VRSK  D    V V  A+V++A +IDPLG
Sbjct  33  WRRGAFVFGVATLLAAVFRLMMPSERVGLLAVRSKPFDVGALVAVGGAIVWLAVSIDPLG  92

Query  96  T  96
           T
Sbjct  93  T  93


>gi|73486999|gb|AAZ76616.1| 3355 protein [Mycobacterium boenickei]
Length=72

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 30/45 (67%), Positives = 38/45 (85%), Gaps = 0/45 (0%)

Query  53  LRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           +RL L+++RAGLLVVRS+ IDF TT TV+A ++YIA TIDPLGT 
Sbjct  28  VRLALTDDRAGLLVVRSRTIDFATTATVSAVVLYIAWTIDPLGTS  72


>gi|73487012|gb|AAZ76626.1| 3355 protein [Mycobacterium neworleansense]
Length=66

 Score = 61.2 bits (147),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 38/62 (62%), Positives = 47/62 (76%), Gaps = 1/62 (1%)

Query  35  FWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPL  94
           +WRRGA     G   AA+  L L+++RAGLLVVRS+ IDF TT TV+AA++YIA TIDPL
Sbjct  5   YWRRGAXSSDRGGAAAALR-LALTDDRAGLLVVRSRTIDFATTATVSAAVLYIAWTIDPL  63

Query  95  GT  96
           GT
Sbjct  64  GT  65


>gi|296394296|ref|YP_003659180.1| hypothetical protein Srot_1889 [Segniliparus rotundus DSM 44985]
 gi|296181443|gb|ADG98349.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=112

 Score = 60.8 bits (146),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 34/64 (54%), Positives = 43/64 (68%), Gaps = 0/64 (0%)

Query  34   NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDP  93
            + WRRG  +IG  V VAAVLR VL   RAGLL VRS+  D      V AA+++++ TI+P
Sbjct  47   DRWRRGGAVIGFAVIVAAVLRAVLPTNRAGLLAVRSRVFDVAVLALVGAAILWVSWTINP  106

Query  94   LGTG  97
            LGTG
Sbjct  107  LGTG  110


>gi|226365703|ref|YP_002783486.1| hypothetical protein ROP_62940 [Rhodococcus opacus B4]
 gi|226244193|dbj|BAH54541.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=94

 Score = 60.1 bits (144),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 30/61 (50%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  36  WRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDPLG  95
           WRRGA + G+   +AA  RL +  ER GLL VRS+  D    V V  A+V++A +IDPLG
Sbjct  33  WRRGAFVFGVATLLAAAFRLTMPSERVGLLAVRSRAFDVGALVAVGGAIVWLAVSIDPLG  92

Query  96  T  96
           T
Sbjct  93  T  93


>gi|333921644|ref|YP_004495225.1| hypothetical protein AS9A_3989 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333483865|gb|AEF42425.1| hypothetical protein AS9A_3989 [Amycolicicoccus subflavus DQS3-9A1]
Length=100

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/89 (41%), Positives = 55/89 (62%), Gaps = 0/89 (0%)

Query  9   RTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVR  68
           RTV A  P+ ++ +   +  +L  ++ WRRGA ++GI   +AA  RL+L E +AGLLVVR
Sbjct  12  RTVMAHIPLAIIAAFLLLALILVVSDRWRRGAFVVGIATLLAAWFRLILPEVQAGLLVVR  71

Query  69  SKGIDFVTTVTVAAAMVYIASTIDPLGTG  97
           S+  D      +   +V++  +IDPLGTG
Sbjct  72  SRPFDVGALTLMGGTIVWLTLSIDPLGTG  100


>gi|302524133|ref|ZP_07276475.1| predicted protein [Streptomyces sp. AA4]
 gi|302433028|gb|EFL04844.1| predicted protein [Streptomyces sp. AA4]
Length=103

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 34/76 (45%), Positives = 47/76 (62%), Gaps = 0/76 (0%)

Query  16  PILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFV  75
           P  ++  + AV  V A    WR GA L+G+ + VA  LR VL EERAGLL +R K +D V
Sbjct  19  PFAVILLLLAVAVVRAVQYHWREGAALVGVALFVAGALRAVLPEERAGLLAIRGKIVDIV  78

Query  76  TTVTVAAAMVYIASTI  91
           T   + AA+++I+ TI
Sbjct  79  TYGALCAAVLFISLTI  94


>gi|262201702|ref|YP_003272910.1| hypothetical protein Gbro_1758 [Gordonia bronchialis DSM 43247]
 gi|262085049|gb|ACY21017.1| hypothetical protein Gbro_1758 [Gordonia bronchialis DSM 43247]
Length=107

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 35/88 (40%), Positives = 49/88 (56%), Gaps = 0/88 (0%)

Query  9    RTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVR  68
            R+   Q P LLV +      +L   + WRRG+ + G  + V AVLR  +   RAGLL VR
Sbjct  19   RSYLVQIPYLLVMAGVVAAALLVLFDRWRRGSFVFGTALLVGAVLRACIPSSRAGLLQVR  78

Query  69   SKGIDFVTTVTVAAAMVYIASTIDPLGT  96
             K  D V   +V   M+++A++ID LGT
Sbjct  79   GKFFDVVAMASVGVLMLWLATSIDSLGT  106


>gi|296138671|ref|YP_003645914.1| hypothetical protein Tpau_0942 [Tsukamurella paurometabola DSM 
20162]
 gi|296026805|gb|ADG77575.1| hypothetical protein Tpau_0942 [Tsukamurella paurometabola DSM 
20162]
Length=104

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 43/75 (58%), Gaps = 0/75 (0%)

Query  22   SIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVA  81
            ++  VG VL G  +WRRG  + G G G+AAVLR  L + R GLL VRS+  D       A
Sbjct  29   AVLTVGMVLVGLEYWRRGLAVFGAGTGLAAVLRATLPDRRQGLLRVRSRWFDTTVLAVAA  88

Query  82   AAMVYIASTIDPLGT  96
             A++ +  TI  LGT
Sbjct  89   VAILVVTWTISTLGT  103


>gi|326381930|ref|ZP_08203623.1| hypothetical protein SCNU_03262 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326199356|gb|EGD56537.1| hypothetical protein SCNU_03262 [Gordonia neofelifaecis NRRL 
B-59395]
Length=118

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 29/81 (36%), Positives = 46/81 (57%), Gaps = 0/81 (0%)

Query  16   PILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFV  75
            P  +V ++ AV  +L   + WRRGA + G  + + AV R  L   R GLL VRS+  D  
Sbjct  37   PYYIVLAVIAVAALLVLIDRWRRGAFVFGAAMLLGAVFRAFLPANRTGLLQVRSRAFDIS  96

Query  76   TTVTVAAAMVYIASTIDPLGT  96
                +  +++++A++ID LGT
Sbjct  97   AMAVLGGSVLWLATSIDSLGT  117


>gi|312140783|ref|YP_004008119.1| integral membrane protein [Rhodococcus equi 103S]
 gi|325675577|ref|ZP_08155261.1| hypothetical protein HMPREF0724_13043 [Rhodococcus equi ATCC 
33707]
 gi|311890122|emb|CBH49440.1| putative integral membrane protein [Rhodococcus equi 103S]
 gi|325553548|gb|EGD23226.1| hypothetical protein HMPREF0724_13043 [Rhodococcus equi ATCC 
33707]
Length=91

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 40/83 (49%), Positives = 54/83 (66%), Gaps = 0/83 (0%)

Query  14  QWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGID  73
            WP+L V  + A  FVL  A+ WRRGAL++G  + +AA+LR  LS +R GLL VR KG D
Sbjct  8   NWPLLAVVLVVAAAFVLVLADRWRRGALVLGGAMVLAALLRAALSPDRVGLLAVRGKGFD  67

Query  74  FVTTVTVAAAMVYIASTIDPLGT  96
                 V A ++ +A++IDPLGT
Sbjct  68  VAAMAVVGATIIALAASIDPLGT  90


>gi|134103080|ref|YP_001108741.1| hypothetical protein SACE_6650 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291008966|ref|ZP_06566939.1| hypothetical protein SeryN2_30963 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133915703|emb|CAM05816.1| hypothetical protein SACE_6650 [Saccharopolyspora erythraea NRRL 
2338]
Length=96

 Score = 51.2 bits (121),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 29/78 (38%), Positives = 48/78 (62%), Gaps = 0/78 (0%)

Query  14  QWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGID  73
            +P   V  +  +GF+      WR+G++LIG+ + +AAVLR +L+ E+AGLL +RS+ ID
Sbjct  14  HFPFAAVVLVALIGFLRIAMQHWRQGSVLIGVALVLAAVLRALLTNEQAGLLAIRSRAID  73

Query  74  FVTTVTVAAAMVYIASTI  91
            +    +   +V +A TI
Sbjct  74  ILLYGGLGVVIVVVAMTI  91


>gi|325001993|ref|ZP_08123105.1| hypothetical protein PseP1_24666 [Pseudonocardia sp. P1]
Length=80

 Score = 50.4 bits (119),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 27/67 (41%), Positives = 39/67 (59%), Gaps = 0/67 (0%)

Query  7   FRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV  66
            R  + A WP+L V +I  +G        WR G+  +G+ + VAAVLR+VL  +R GLL 
Sbjct  10  LRARLRAYWPLLTVLAIALIGLQRVATEHWREGSAALGVAMLVAAVLRVVLPPDRVGLLA  69

Query  67  VRSKGID  73
           VR + +D
Sbjct  70  VRGRYVD  76


>gi|256380486|ref|YP_003104146.1| hypothetical protein Amir_6499 [Actinosynnema mirum DSM 43827]
 gi|255924789|gb|ACU40300.1| hypothetical protein Amir_6499 [Actinosynnema mirum DSM 43827]
Length=99

 Score = 50.4 bits (119),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 30/85 (36%), Positives = 50/85 (59%), Gaps = 0/85 (0%)

Query  7   FRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV  66
           +R   G   P  LV  +  VG V      WR G +LIG+ + +AAVLR+++S+ +AGL+ 
Sbjct  6   WRGAAGQHLPFALVLGVTLVGLVRILQYNWREGVVLIGVALLIAAVLRVLVSDAQAGLIA  65

Query  67  VRSKGIDFVTTVTVAAAMVYIASTI  91
           +R +G+D +    +  A++ +A TI
Sbjct  66  IRGRGVDALLYSAMGLAVIVVAMTI  90


>gi|257054571|ref|YP_003132403.1| hypothetical protein Svir_05010 [Saccharomonospora viridis DSM 
43017]
 gi|256584443|gb|ACU95576.1| hypothetical protein Svir_05010 [Saccharomonospora viridis DSM 
43017]
Length=106

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 31/85 (37%), Positives = 47/85 (56%), Gaps = 0/85 (0%)

Query  7   FRRTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLV  66
            R +V    P   V ++ A G +      WR GA+LIG  + VAAVLR  LS ER GLL 
Sbjct  16  HRDSVLVHLPFAAVLALVAFGMLRIAMYHWREGAVLIGGALLVAAVLRAALSHERTGLLA  75

Query  67  VRSKGIDFVTTVTVAAAMVYIASTI  91
           +R++ +D ++   +   +++ A TI
Sbjct  76  IRTRTVDVLSYAGLGLLILFTALTI  100


>gi|72162968|ref|YP_290625.1| integral membrane protein [Thermobifida fusca YX]
 gi|71916700|gb|AAZ56602.1| putative integral membrane protein [Thermobifida fusca YX]
Length=175

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 31/75 (42%), Positives = 46/75 (62%), Gaps = 0/75 (0%)

Query  14   QWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGID  73
            Q P LLV +  + G V+  A  ++RG  +I   + + AVLR VL  ER G+L VRS+ +D
Sbjct  95   QVPYLLVLATMSAGIVVVAAAHFKRGPAIIAGSLLLGAVLRAVLPTERVGMLAVRSRWVD  154

Query  74   FVTTVTVAAAMVYIA  88
             VT VT+A  ++ +A
Sbjct  155  VVTFVTLAVLLIVLA  169


>gi|343926624|ref|ZP_08766122.1| hypothetical protein GOALK_067_00070 [Gordonia alkanivorans NBRC 
16433]
 gi|343763376|dbj|GAA13048.1| hypothetical protein GOALK_067_00070 [Gordonia alkanivorans NBRC 
16433]
Length=134

 Score = 49.7 bits (117),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 34/88 (39%), Positives = 47/88 (54%), Gaps = 0/88 (0%)

Query  9    RTVGAQWPILLVGSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVR  68
            R V  Q P LLV        +L   + WRRG+ + G  + V A+LR  +   +AGLL VR
Sbjct  46   RAVLVQIPYLLVMLGVLAAALLVMFDRWRRGSFVFGAALLVGALLRAFIPSSQAGLLQVR  105

Query  69   SKGIDFVTTVTVAAAMVYIASTIDPLGT  96
             K  D     TV   M+++A++ID LGT
Sbjct  106  GKLFDVSVMATVGGVMLWLATSIDSLGT  133


>gi|317508479|ref|ZP_07966147.1| hypothetical protein HMPREF9336_02519 [Segniliparus rugosus ATCC 
BAA-974]
 gi|316253227|gb|EFV12629.1| hypothetical protein HMPREF9336_02519 [Segniliparus rugosus ATCC 
BAA-974]
Length=115

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 27/63 (43%), Positives = 37/63 (59%), Gaps = 0/63 (0%)

Query  34   NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSKGIDFVTTVTVAAAMVYIASTIDP  93
            + WRRG  +IG  V   AV R  L   R GLL VR +  D +    V AA+++++ TI+P
Sbjct  50   DRWRRGGAVIGAAVLAGAVFRAALPTNRVGLLAVRGRLFDVLALALVGAAILWVSWTINP  109

Query  94   LGT  96
            LGT
Sbjct  110  LGT  112


>gi|319948748|ref|ZP_08022868.1| hypothetical protein ES5_05178 [Dietzia cinnamea P4]
 gi|319437581|gb|EFV92581.1| hypothetical protein ES5_05178 [Dietzia cinnamea P4]
Length=87

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 41/87 (48%), Positives = 56/87 (65%), Gaps = 4/87 (4%)

Query  13  AQWPILLV--GSIFAVGFVLAGANFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRSK  70
           AQWP+ LV  G + A+GFV+     WRRGA L+G+    AA LR VL +ERA LL VR K
Sbjct  3   AQWPLALVLAGVVVALGFVVL--ERWRRGAFLLGLVALAAATLRAVLPDERARLLGVRGK  60

Query  71  GIDFVTTVTVAAAMVYIASTIDPLGTG  97
             D    V + A ++++A+++D LGTG
Sbjct  61  KFDVAFYVGIGAVILWLATSVDSLGTG  87


>gi|227832339|ref|YP_002834046.1| hypothetical protein cauri_0511 [Corynebacterium aurimucosum 
ATCC 700975]
 gi|227453355|gb|ACP32108.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length=140

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 34/87 (40%), Positives = 48/87 (56%), Gaps = 7/87 (8%)

Query  14   QWPILLVGSIFAVGFVLAGA----NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRS  69
            QW  L +G +F V  V++G       WRR  LL+G  +   AV+RL     R G+L VRS
Sbjct  57   QW--LAIG-LFVVAVVVSGFYAVFEHWRRATLLLGGALMWLAVVRLTCDSSRVGVLAVRS  113

Query  70   KGIDFVTTVTVAAAMVYIASTIDPLGT  96
            +  D   T  + AAM ++A +ID LG+
Sbjct  114  RRFDACFTGILGAAMAFLAFSIDALGS  140


>gi|262183801|ref|ZP_06043222.1| hypothetical protein CaurA7_07408 [Corynebacterium aurimucosum 
ATCC 700975]
Length=104

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 34/87 (40%), Positives = 48/87 (56%), Gaps = 7/87 (8%)

Query  14   QWPILLVGSIFAVGFVLAGA----NFWRRGALLIGIGVGVAAVLRLVLSEERAGLLVVRS  69
            QW  L +G +F V  V++G       WRR  LL+G  +   AV+RL     R G+L VRS
Sbjct  21   QW--LAIG-LFVVAVVVSGFYAVFEHWRRATLLLGGALMWLAVVRLTCDSSRVGVLAVRS  77

Query  70   KGIDFVTTVTVAAAMVYIASTIDPLGT  96
            +  D   T  + AAM ++A +ID LG+
Sbjct  78   RRFDACFTGILGAAMAFLAFSIDALGS  104



Lambda     K      H
   0.329    0.143    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130655526400


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40