BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3360
Length=122
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610496|ref|NP_217877.1| hypothetical protein Rv3360 [Mycoba... 248 3e-64
gi|306809366|ref|ZP_07446034.1| hypothetical protein TMGG_03839 ... 245 1e-63
gi|167967344|ref|ZP_02549621.1| hypothetical protein MtubH3_0462... 232 2e-59
gi|296165924|ref|ZP_06848398.1| FHA domain protein [Mycobacteriu... 166 1e-39
gi|183981195|ref|YP_001849486.1| transmembrane ATP-binding prote... 160 5e-38
gi|240169069|ref|ZP_04747728.1| ABC transporter, ATP-binding pro... 156 8e-37
gi|342861573|ref|ZP_08718220.1| ABC transporter ATP-binding prot... 156 8e-37
gi|183981196|ref|YP_001849487.1| transmembrane ATP-binding prote... 156 1e-36
gi|336459682|gb|EGO38616.1| ABC-type multidrug transport system,... 155 1e-36
gi|41409564|ref|NP_962400.1| hypothetical protein MAP3466 [Mycob... 155 2e-36
gi|118617100|ref|YP_905432.1| transmembrane ATP-binding protein ... 153 6e-36
gi|108798172|ref|YP_638369.1| FHA domain-containing protein [Myc... 153 9e-36
gi|41409563|ref|NP_962399.1| hypothetical protein MAP3465 [Mycob... 152 1e-35
gi|126433830|ref|YP_001069521.1| ABC transporter-like protein [M... 152 2e-35
gi|296168833|ref|ZP_06850506.1| ABC superfamily ATP binding cass... 151 2e-35
gi|118471926|ref|YP_886019.1| ABC transporter ATP-binding protei... 151 3e-35
gi|254822556|ref|ZP_05227557.1| hypothetical protein MintA_21684... 150 8e-35
gi|254776754|ref|ZP_05218270.1| ABC transporter, ATP-binding pro... 148 2e-34
gi|118463443|ref|YP_883462.1| ABC transporter ATP-binding protei... 148 2e-34
gi|145225458|ref|YP_001136136.1| ABC transporter-like protein [M... 146 8e-34
gi|120402553|ref|YP_952382.1| ABC transporter--like protein [Myc... 143 6e-33
gi|289443210|ref|ZP_06432954.1| conserved transmembrane ATP-bind... 142 2e-32
gi|298525245|ref|ZP_07012654.1| conserved hypothetical protein [... 142 2e-32
gi|15608885|ref|NP_216263.1| transmembrane ATP-binding protein A... 142 2e-32
gi|344219569|gb|AEN00200.1| transmembrane ATP-binding protein AB... 142 2e-32
gi|15841211|ref|NP_336248.1| ABC transporter, ATP-binding protei... 142 2e-32
gi|289757857|ref|ZP_06517235.1| transmembrane ATP-binding protei... 141 3e-32
gi|336457706|gb|EGO36706.1| ABC-type multidrug transport system,... 139 2e-31
gi|41407555|ref|NP_960391.1| hypothetical protein MAP1457 [Mycob... 138 2e-31
gi|254775457|ref|ZP_05216973.1| ABC transporter, ATP-binding pro... 138 2e-31
gi|296164688|ref|ZP_06847254.1| ABC superfamily ATP binding cass... 137 4e-31
gi|333991836|ref|YP_004524450.1| transmembrane ATP-binding prote... 135 2e-30
gi|254821141|ref|ZP_05226142.1| ABC transporter related protein ... 133 8e-30
gi|240172661|ref|ZP_04751320.1| transmembrane ATP-binding protei... 130 5e-29
gi|254820360|ref|ZP_05225361.1| hypothetical protein MintA_10546... 130 5e-29
gi|240169068|ref|ZP_04747727.1| transmembrane ATP-binding protei... 128 3e-28
gi|342861397|ref|ZP_08718045.1| ABC transporter ATP-binding prot... 127 4e-28
gi|118618514|ref|YP_906846.1| transmembrane ATP-binding protein ... 127 5e-28
gi|183982622|ref|YP_001850913.1| transmembrane ATP-binding prote... 127 6e-28
gi|118465124|ref|YP_882196.1| ABC transporter ATP-binding protei... 127 6e-28
gi|240169070|ref|ZP_04747729.1| transmembrane ATP-binding protei... 124 4e-27
gi|118466082|ref|YP_883461.1| ABC transporter ATP-binding protei... 124 4e-27
gi|254820267|ref|ZP_05225268.1| hypothetical protein MintA_10081... 123 1e-26
gi|254776752|ref|ZP_05218268.1| hypothetical protein MaviaA2_190... 122 2e-26
gi|41407429|ref|NP_960265.1| hypothetical protein MAP1331c [Myco... 122 2e-26
gi|296164507|ref|ZP_06847078.1| ABC superfamily ATP binding cass... 120 5e-26
gi|336459683|gb|EGO38617.1| ABC-type multidrug transport system,... 110 9e-23
gi|342861572|ref|ZP_08718219.1| ABC transporter ATP-binding prot... 100 1e-19
gi|342860792|ref|ZP_08717442.1| ABC transporter ATP-binding prot... 99.8 1e-19
gi|254820993|ref|ZP_05225994.1| hypothetical protein MintA_13745... 97.8 5e-19
>gi|15610496|ref|NP_217877.1| hypothetical protein Rv3360 [Mycobacterium tuberculosis H37Rv]
gi|15842956|ref|NP_337993.1| hypothetical protein MT3468 [Mycobacterium tuberculosis CDC1551]
gi|31794543|ref|NP_857036.1| hypothetical protein Mb3395 [Mycobacterium bovis AF2122/97]
73 more sequence titles
Length=122
Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI
Sbjct 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS 120
DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS
Sbjct 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS 120
Query 121 PI 122
PI
Sbjct 121 PI 122
>gi|306809366|ref|ZP_07446034.1| hypothetical protein TMGG_03839 [Mycobacterium tuberculosis SUMu007]
gi|306969471|ref|ZP_07482132.1| hypothetical protein TMIG_03634 [Mycobacterium tuberculosis SUMu009]
gi|308344340|gb|EFP33191.1| hypothetical protein TMGG_03839 [Mycobacterium tuberculosis SUMu007]
gi|308352997|gb|EFP41848.1| hypothetical protein TMIG_03634 [Mycobacterium tuberculosis SUMu009]
Length=122
Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/122 (99%), Positives = 121/122 (99%), Gaps = 0/122 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIA AHLLLRFDRGNWIAI
Sbjct 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIAHAHLLLRFDRGNWIAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS 120
DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS
Sbjct 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS 120
Query 121 PI 122
PI
Sbjct 121 PI 122
>gi|167967344|ref|ZP_02549621.1| hypothetical protein MtubH3_04622 [Mycobacterium tuberculosis
H37Ra]
gi|254552462|ref|ZP_05142909.1| hypothetical protein Mtube_18760 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|323717981|gb|EGB27168.1| hypothetical protein TMMG_04027 [Mycobacterium tuberculosis CDC1551A]
Length=115
Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/115 (99%), Positives = 115/115 (100%), Gaps = 0/115 (0%)
Query 8 VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG 67
+LTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG
Sbjct 1 MLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG 60
Query 68 MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGSPI 122
MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGSPI
Sbjct 61 MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGSPI 115
>gi|296165924|ref|ZP_06848398.1| FHA domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898721|gb|EFG78253.1| FHA domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=132
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/118 (70%), Positives = 94/118 (80%), Gaps = 0/118 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
M+ PVLTVRSDRS+ FAAGRDVVVGSDLRAD+RVAHPL+ARAHLLLRFD G W+A+
Sbjct 1 MTEAAEPVLTVRSDRSKGSFAAGRDVVVGSDLRADLRVAHPLVARAHLLLRFDHGKWVAL 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRP 118
DN S +G++V+GQRV VDI DG TINIGKP GP ITFE+GHH G +G L T S P
Sbjct 61 DNKSLNGVYVNGQRVPLVDIEDGQTINIGKPDGPRITFEIGHHTGTVGMLPPTTESIP 118
>gi|183981195|ref|YP_001849486.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
marinum M]
gi|183174521|gb|ACC39631.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium
marinum M]
Length=841
Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/119 (67%), Positives = 97/119 (82%), Gaps = 1/119 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
M+R PVLTVRS SQ+ FAAG DV+VGSDL AD+RVAHPLI RAHLLLRF++G+W+AI
Sbjct 1 MTRAQRPVLTVRSGPSQRSFAAGPDVIVGSDLHADLRVAHPLIDRAHLLLRFEQGSWVAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPG 119
DN+SQSG++VDG+RV +DI DGL +N+G+ GP ITFEVGHHQG+IG L P + PG
Sbjct 61 DNNSQSGIYVDGRRVPLIDIRDGLAMNLGRADGPRITFEVGHHQGVIGLLP-PPETMPG 118
>gi|240169069|ref|ZP_04747728.1| ABC transporter, ATP-binding protein [Mycobacterium kansasii
ATCC 12478]
Length=813
Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/114 (67%), Positives = 96/114 (85%), Gaps = 1/114 (0%)
Query 8 VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG 67
+LTVRSDRSQ+ FA G D +VGSDLRAD+RVAHPL+A+AH+++RF++GNWIAIDN S++G
Sbjct 1 MLTVRSDRSQRSFAPGADAIVGSDLRADLRVAHPLVAQAHVVVRFEQGNWIAIDN-SRTG 59
Query 68 MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGSP 121
MFVDG+RV VDI DGL +N+G+P GP I+FEVGHH+GIIG L +T PG P
Sbjct 60 MFVDGRRVPLVDIRDGLVVNLGRPDGPRISFEVGHHRGIIGLLPQTGFPPPGGP 113
>gi|342861573|ref|ZP_08718220.1| ABC transporter ATP-binding protein [Mycobacterium colombiense
CECT 3035]
gi|342131062|gb|EGT84351.1| ABC transporter ATP-binding protein [Mycobacterium colombiense
CECT 3035]
Length=846
Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/111 (70%), Positives = 91/111 (82%), Gaps = 0/111 (0%)
Query 8 VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG 67
+LT RSDRS+ FAAGRDVVVGSDLRAD+RVAHPLIARAH+LLRFD+G W A+DN+S +G
Sbjct 1 MLTARSDRSEGSFAAGRDVVVGSDLRADLRVAHPLIARAHVLLRFDQGRWRAVDNNSLNG 60
Query 68 MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRP 118
+++DGQRV VDI+DG TINIGKP GP ITF+VG H G +G L T S P
Sbjct 61 VYLDGQRVPVVDIHDGQTINIGKPDGPRITFKVGQHTGSVGLLPPTTKSFP 111
Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/87 (29%), Positives = 37/87 (43%), Gaps = 7/87 (8%)
Query 23 GRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYD 82
GR +G L D+ V L +R H L D +S +G FV+G RV + D
Sbjct 213 GRTAWIGRALNNDIVVPDVLASRHHAFLNPTATGAEIRDANSSNGTFVNGVRVGSAALSD 272
Query 83 GLTINIGKPTGPWITFEVGHHQGIIGR 109
G + IG ++ H G++ R
Sbjct 273 GDVVTIGN-------VDLVFHNGVLVR 292
>gi|183981196|ref|YP_001849487.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
marinum M]
gi|183174522|gb|ACC39632.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium
marinum M]
Length=873
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/117 (64%), Positives = 92/117 (79%), Gaps = 0/117 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
M +P PP LTVR D S++ FAAG DVVVG DLRADMR+ HPLI+RAHLLLRFD+G W+AI
Sbjct 1 MPQPAPPALTVRCDGSERTFAAGHDVVVGRDLRADMRITHPLISRAHLLLRFDQGRWLAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR 117
DN+S +G FV+G+RV V+IYDG ++NIG P GP ++FEVG H G+ GR +T S R
Sbjct 61 DNNSLNGTFVNGRRVPMVEIYDGQSLNIGNPDGPLLSFEVGRHVGMAGRPPQTESMR 117
>gi|336459682|gb|EGO38616.1| ABC-type multidrug transport system, ATPase component [Mycobacterium
avium subsp. paratuberculosis S397]
Length=409
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/107 (70%), Positives = 89/107 (84%), Gaps = 0/107 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
M+R PVLT RSDRS+ FAAGRDVVVGSDLRAD+RVAHPLIARAH+LLRF++G W A+
Sbjct 1 MTRSAQPVLTARSDRSEGSFAAGRDVVVGSDLRADLRVAHPLIARAHVLLRFEQGRWRAV 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGII 107
DN++ +G++VDG+RV VDI DG TINIGKP GP ITFE+G H G +
Sbjct 61 DNNTLNGVYVDGRRVPAVDIQDGQTINIGKPDGPRITFEIGQHTGAV 107
>gi|41409564|ref|NP_962400.1| hypothetical protein MAP3466 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398395|gb|AAS06016.1| hypothetical protein MAP_3466 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=822
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/107 (70%), Positives = 89/107 (84%), Gaps = 0/107 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
M+R PVLT RSDRS+ FAAGRDVVVGSDLRAD+RVAHPLIARAH+LLRF++G W A+
Sbjct 4 MTRSAQPVLTARSDRSEGSFAAGRDVVVGSDLRADLRVAHPLIARAHVLLRFEQGRWRAV 63
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGII 107
DN++ +G++VDG+RV VDI DG TINIGKP GP ITFE+G H G +
Sbjct 64 DNNTLNGVYVDGRRVPAVDIQDGQTINIGKPDGPRITFEIGQHTGAV 110
>gi|118617100|ref|YP_905432.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
ulcerans Agy99]
gi|118569210|gb|ABL03961.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium
ulcerans Agy99]
Length=842
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/119 (64%), Positives = 94/119 (79%), Gaps = 1/119 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
M+R PVLTVRS SQ+ FAAG DV+VGSDL AD+RVAHPLI RAHLLLRF++G+W+ I
Sbjct 2 MTRAQQPVLTVRSGPSQRSFAAGPDVIVGSDLHADLRVAHPLIDRAHLLLRFEQGSWVPI 61
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPG 119
DN+SQS ++VD +RV +DI DGL +N+G+ GP ITFEVGHHQG+IG L P + PG
Sbjct 62 DNNSQSRIYVDARRVPLIDIRDGLAMNLGRADGPRITFEVGHHQGVIGLLP-PPETMPG 119
>gi|108798172|ref|YP_638369.1| FHA domain-containing protein [Mycobacterium sp. MCS]
gi|119867268|ref|YP_937220.1| ABC transporter-like protein [Mycobacterium sp. KMS]
gi|108768591|gb|ABG07313.1| FHA domain containing protein [Mycobacterium sp. MCS]
gi|119693357|gb|ABL90430.1| ABC transporter related protein [Mycobacterium sp. KMS]
Length=866
Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 73/113 (65%), Positives = 89/113 (79%), Gaps = 0/113 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MSRP PP LTVR + S + FA G DVV+G DLRAD+R+AHPLI+RAHL+LRFD+G W+AI
Sbjct 1 MSRPSPPALTVRYEGSTRTFAPGNDVVIGRDLRADVRIAHPLISRAHLVLRFDQGRWVAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRT 113
DN S +GMFV+G+RV VDI DG ++NIG P GP +TFEVG HQG GR +T
Sbjct 61 DNGSLNGMFVNGRRVPAVDIRDGQSLNIGNPDGPQLTFEVGRHQGSAGRPPQT 113
>gi|41409563|ref|NP_962399.1| hypothetical protein MAP3465 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398394|gb|AAS06015.1| hypothetical protein MAP_3465 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=873
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/115 (64%), Positives = 89/115 (78%), Gaps = 0/115 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MS P PP LTV + S++ FAAG DVVVG DLRADMR+ HPLI+RAHLLLR+D+G W+AI
Sbjct 3 MSAPAPPALTVHHEGSERTFAAGHDVVVGRDLRADMRITHPLISRAHLLLRYDQGKWLAI 62
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS 115
DN S +G FV+G+RV V+I+DG INIG P GP +TF+VG HQG+ GR RT S
Sbjct 63 DNGSLNGTFVNGRRVPVVEIHDGCAINIGNPDGPLLTFDVGRHQGMAGRPPRTES 117
>gi|126433830|ref|YP_001069521.1| ABC transporter-like protein [Mycobacterium sp. JLS]
gi|126233630|gb|ABN97030.1| ABC transporter related protein [Mycobacterium sp. JLS]
Length=866
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/113 (64%), Positives = 89/113 (79%), Gaps = 0/113 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MSRP PP LTVR + S + FA G DVV+G DLRAD+R+AHPLI+RAHL+LRFD+G W+AI
Sbjct 1 MSRPSPPALTVRYEGSTRTFAPGNDVVIGRDLRADVRIAHPLISRAHLVLRFDQGRWVAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRT 113
DN S +GMFV+G+RV VD+ DG ++NIG P GP +TFEVG HQG GR +T
Sbjct 61 DNGSLNGMFVNGRRVPAVDLRDGQSLNIGNPDGPQLTFEVGRHQGSAGRPPQT 113
>gi|296168833|ref|ZP_06850506.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896492|gb|EFG76141.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length=149
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/115 (66%), Positives = 90/115 (79%), Gaps = 0/115 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MS P PPVLTVR D S++ FAAG DVVVG DLRADMR+ HPLI+RAHLLLRFD+G W+AI
Sbjct 1 MSAPAPPVLTVRFDGSERTFAAGHDVVVGRDLRADMRITHPLISRAHLLLRFDQGRWLAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS 115
DN S +G FV+G+RV V+I+DG +NIG P GP + FEVG HQG+ GR +T S
Sbjct 61 DNGSLNGTFVNGRRVPVVEIHDGQCLNIGNPDGPQLLFEVGRHQGMAGRPPQTES 115
>gi|118471926|ref|YP_886019.1| ABC transporter ATP-binding protein [Mycobacterium smegmatis
str. MC2 155]
gi|118173213|gb|ABK74109.1| ABC transporter, ATP-binding protein [Mycobacterium smegmatis
str. MC2 155]
Length=899
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/109 (65%), Positives = 87/109 (80%), Gaps = 0/109 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MSRP PP LTVR + S + FA G DVV+G DLRAD+R+AHPLI+RAHL+LRFD+G W+AI
Sbjct 1 MSRPSPPALTVRYEGSTRTFAPGSDVVIGRDLRADVRIAHPLISRAHLVLRFDQGRWVAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGR 109
DN S +GM+V+G+RVS VD+ DG +NIG P GP ++FEVG HQG GR
Sbjct 61 DNGSLNGMYVNGRRVSSVDLQDGQVLNIGNPDGPQLSFEVGRHQGSAGR 109
>gi|254822556|ref|ZP_05227557.1| hypothetical protein MintA_21684 [Mycobacterium intracellulare
ATCC 13950]
Length=783
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/101 (71%), Positives = 86/101 (86%), Gaps = 0/101 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
M+RP P+LT RS+ SQ F AGRDVVVG+DLRAD+RVAHPLIARAHLLLRFDRG W+A+
Sbjct 1 MTRPAQPLLTARSEHSQGSFTAGRDVVVGNDLRADLRVAHPLIARAHLLLRFDRGRWLAV 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVG 101
DN++ +G+++DG+RV VDI DG +INIGKP GP ITFEVG
Sbjct 61 DNNTLNGVYLDGRRVPVVDIRDGQSINIGKPDGPRITFEVG 101
>gi|254776754|ref|ZP_05218270.1| ABC transporter, ATP-binding protein [Mycobacterium avium subsp.
avium ATCC 25291]
Length=812
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/100 (70%), Positives = 85/100 (85%), Gaps = 0/100 (0%)
Query 8 VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG 67
+LT RSDRS+ FAAGRDVVVGSDLRAD+RVAHPLIARAH+LLRF++G W A+DN++ +G
Sbjct 1 MLTARSDRSEGSFAAGRDVVVGSDLRADLRVAHPLIARAHVLLRFEQGRWRAVDNNTLNG 60
Query 68 MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGII 107
++VDG+RV VDI DG TINIGKP GP ITFE+G H G +
Sbjct 61 VYVDGRRVPAVDIQDGQTINIGKPDGPRITFEIGQHTGAV 100
>gi|118463443|ref|YP_883462.1| ABC transporter ATP-binding protein [Mycobacterium avium 104]
gi|118164730|gb|ABK65627.1| ABC transporter, ATP-binding protein [Mycobacterium avium 104]
Length=812
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/100 (70%), Positives = 85/100 (85%), Gaps = 0/100 (0%)
Query 8 VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG 67
+LT RSDRS+ FAAGRDVVVGSDLRAD+RVAHPLIARAH+LLRF++G W A+DN++ +G
Sbjct 1 MLTARSDRSEGSFAAGRDVVVGSDLRADLRVAHPLIARAHVLLRFEQGRWRAVDNNTLNG 60
Query 68 MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGII 107
++VDG+RV VDI DG TINIGKP GP ITFE+G H G +
Sbjct 61 VYVDGRRVPAVDIQDGQTINIGKPDGPRITFEIGQHTGAV 100
>gi|145225458|ref|YP_001136136.1| ABC transporter-like protein [Mycobacterium gilvum PYR-GCK]
gi|315445811|ref|YP_004078690.1| ABC-type multidrug transporter, ATPase component [Mycobacterium
sp. Spyr1]
gi|145217944|gb|ABP47348.1| ABC transporter related protein [Mycobacterium gilvum PYR-GCK]
gi|315264114|gb|ADU00856.1| ABC-type multidrug transport system, ATPase component [Mycobacterium
sp. Spyr1]
Length=869
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/122 (62%), Positives = 88/122 (73%), Gaps = 4/122 (3%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MSRP P LTVR D S FAAG DVVVG DLRAD+R+AHPLI+RAHL+LRFD+G WIAI
Sbjct 1 MSRPGSPALTVRYDGSTHTFAAGNDVVVGRDLRADVRIAHPLISRAHLVLRFDQGRWIAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS 120
DN S +GM+V+G+RV DI DG ++IG P GP +TFEVG HQG G TP S
Sbjct 61 DNGSLNGMYVNGRRVPAADISDGGQLHIGNPDGPLLTFEVGRHQGSAG----TPPSTTAV 116
Query 121 PI 122
P+
Sbjct 117 PV 118
>gi|120402553|ref|YP_952382.1| ABC transporter--like protein [Mycobacterium vanbaalenii PYR-1]
gi|119955371|gb|ABM12376.1| ABC transporter-related protein [Mycobacterium vanbaalenii PYR-1]
Length=861
Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/108 (63%), Positives = 83/108 (77%), Gaps = 0/108 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MSRP P LTVR D S + FAAG DVVVG DLRAD+R+AHPLI+RAHL+LRFD+G W+AI
Sbjct 1 MSRPATPALTVRYDGSTRSFAAGNDVVVGRDLRADIRIAHPLISRAHLVLRFDQGRWLAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIG 108
DN S +GM+V+G+RV +I DG ++IG P GP + FEVG HQG G
Sbjct 61 DNGSLNGMYVNGRRVPAAEITDGTQVHIGNPDGPLLVFEVGRHQGSAG 108
>gi|289443210|ref|ZP_06432954.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium
tuberculosis T46]
gi|289416129|gb|EFD13369.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium
tuberculosis T46]
Length=865
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)
Query 1 MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA 59
MS+P PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct 3 MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA 62
Query 60 IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR 117
IDN S +G++++ +RV VDIYD ++IG P GP + FEVG H+G GR +T S R
Sbjct 63 IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR 120
>gi|298525245|ref|ZP_07012654.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298495039|gb|EFI30333.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=864
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)
Query 1 MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA 59
MS+P PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct 4 MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA 63
Query 60 IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR 117
IDN S +G++++ +RV VDIYD ++IG P GP + FEVG H+G GR +T S R
Sbjct 64 IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR 121
>gi|15608885|ref|NP_216263.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
tuberculosis H37Rv]
gi|31792935|ref|NP_855428.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
bovis AF2122/97]
gi|121637655|ref|YP_977878.1| putative transmembrane ATP-binding protein ABC transporter [Mycobacterium
bovis BCG str. Pasteur 1173P2]
41 more sequence titles
Length=865
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)
Query 1 MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA 59
MS+P PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct 3 MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA 62
Query 60 IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR 117
IDN S +G++++ +RV VDIYD ++IG P GP + FEVG H+G GR +T S R
Sbjct 63 IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR 120
>gi|344219569|gb|AEN00200.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
tuberculosis CTRI-2]
Length=865
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)
Query 1 MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA 59
MS+P PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct 3 MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA 62
Query 60 IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR 117
IDN S +G++++ +RV VDIYD ++IG P GP + FEVG H+G GR +T S R
Sbjct 63 IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR 120
>gi|15841211|ref|NP_336248.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis
CDC1551]
gi|148822954|ref|YP_001287708.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
tuberculosis F11]
gi|167968638|ref|ZP_02550915.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium
tuberculosis H37Ra]
8 more sequence titles
Length=863
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)
Query 1 MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA 59
MS+P PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct 1 MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA 60
Query 60 IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR 117
IDN S +G++++ +RV VDIYD ++IG P GP + FEVG H+G GR +T S R
Sbjct 61 IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR 118
>gi|289757857|ref|ZP_06517235.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
tuberculosis T85]
gi|289713421|gb|EFD77433.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
tuberculosis T85]
Length=201
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)
Query 1 MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA 59
MS+P PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct 1 MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA 60
Query 60 IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR 117
IDN S +G++++ +RV VDIYD ++IG P GP + FEVG H+G GR +T S R
Sbjct 61 IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR 118
>gi|336457706|gb|EGO36706.1| ABC-type multidrug transport system, ATPase component [Mycobacterium
avium subsp. paratuberculosis S397]
Length=460
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/126 (54%), Positives = 90/126 (72%), Gaps = 4/126 (3%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MS P P LTVR D +++ FAAG DVV+G DLRAD+RVAHPLI+R HL++R+++G W+AI
Sbjct 1 MSPPATPALTVRYDGAERTFAAGNDVVIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----S 116
DN S +G++V+ +RV VDI DG +N+G P GP ++FEVG HQG GR T S S
Sbjct 61 DNGSLNGLYVNNRRVPMVDINDGTRVNMGNPDGPALSFEVGRHQGSAGRPPLTTSIPIVS 120
Query 117 RPGSPI 122
P P+
Sbjct 121 TPSGPM 126
>gi|41407555|ref|NP_960391.1| hypothetical protein MAP1457 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395908|gb|AAS03774.1| hypothetical protein MAP_1457 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=854
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/126 (54%), Positives = 90/126 (72%), Gaps = 4/126 (3%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MS P P LTVR D +++ FAAG DVV+G DLRAD+RVAHPLI+R HL++R+++G W+AI
Sbjct 4 MSPPATPALTVRYDGAERTFAAGNDVVIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAI 63
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----S 116
DN S +G++V+ +RV VDI DG +N+G P GP ++FEVG HQG GR T S S
Sbjct 64 DNGSLNGLYVNNRRVPMVDINDGTRVNMGNPDGPALSFEVGRHQGSAGRPPLTTSIPIVS 123
Query 117 RPGSPI 122
P P+
Sbjct 124 TPSGPM 129
>gi|254775457|ref|ZP_05216973.1| ABC transporter, ATP-binding protein [Mycobacterium avium subsp.
avium ATCC 25291]
Length=872
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/126 (54%), Positives = 90/126 (72%), Gaps = 4/126 (3%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
MS P P LTVR D +++ FAAG DVV+G DLRAD+RVAHPLI+R HL++R+++G W+AI
Sbjct 1 MSPPATPALTVRYDGAERTFAAGNDVVIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----S 116
DN S +G++V+ +RV VDI DG +N+G P GP ++FEVG HQG GR T S S
Sbjct 61 DNGSLNGLYVNNRRVPMVDINDGTRVNMGNPDGPALSFEVGRHQGSAGRPPLTTSIPIVS 120
Query 117 RPGSPI 122
P P+
Sbjct 121 TPSGPM 126
>gi|296164688|ref|ZP_06847254.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295899996|gb|EFG79436.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length=887
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/108 (63%), Positives = 82/108 (76%), Gaps = 0/108 (0%)
Query 8 VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG 67
+LTVR + S++ FAAG DV +G DLRAD+RVAHPLI+R HL++RFD+G WIAIDN S +G
Sbjct 1 MLTVRYEGSERTFAAGNDVAIGRDLRADVRVAHPLISRTHLIVRFDQGRWIAIDNGSLNG 60
Query 68 MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS 115
+FV+ QRV VDI DG +NIG P GP +TFEVG HQG GR T S
Sbjct 61 LFVNHQRVPTVDIQDGTRVNIGNPDGPALTFEVGRHQGTAGRPPLTTS 108
>gi|333991836|ref|YP_004524450.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
sp. JDM601]
gi|333487804|gb|AEF37196.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
sp. JDM601]
Length=879
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/117 (58%), Positives = 87/117 (75%), Gaps = 3/117 (2%)
Query 8 VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG 67
+LTVR D SQ F+AG DVV+G DLRAD+R+ HPL++RAHLLLRF++G W+ IDN S +G
Sbjct 1 MLTVRYDGSQGTFSAGHDVVIGRDLRADIRIPHPLVSRAHLLLRFEQGRWLGIDNGSLNG 60
Query 68 MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS---SRPGSP 121
++V+GQRV VDI DG +N+G P GP ++FEVG HQG GR +T S +PG P
Sbjct 61 IYVNGQRVPMVDIRDGQCVNLGNPDGPRLSFEVGRHQGQAGRPPQTVSIQVPQPGQP 117
>gi|254821141|ref|ZP_05226142.1| ABC transporter related protein [Mycobacterium intracellulare
ATCC 13950]
Length=105
Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/103 (64%), Positives = 82/103 (80%), Gaps = 0/103 (0%)
Query 8 VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG 67
+LTV+S+ SQ+ FA G D+VVGSDLRADMRVAHPLIARAHLLLRFD WIAIDN S SG
Sbjct 1 MLTVQSEWSQRSFAPGHDIVVGSDLRADMRVAHPLIARAHLLLRFDGAKWIAIDNGSPSG 60
Query 68 MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRL 110
+FV+G RV VDI+D ++N+ +P GP ++F +G H G +G+L
Sbjct 61 IFVNGHRVRAVDIHDRQSLNLARPDGPRLSFGIGRHDGAVGQL 103
>gi|240172661|ref|ZP_04751320.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
kansasii ATCC 12478]
Length=150
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/118 (60%), Positives = 87/118 (74%), Gaps = 2/118 (1%)
Query 6 PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQ 65
PPVLTVR + +++ FAAG DVV+G DLRAD+RVA PLI+R HLLLRFD+G WIAIDN S
Sbjct 17 PPVLTVRYNGAERTFAAGHDVVIGRDLRADVRVADPLISRVHLLLRFDQGRWIAIDNGSL 76
Query 66 SGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVG-HHQGIIGRLSRTPSSRPGSPI 122
+G++V +RV VDI+DG INIG P GP + FEVG QG +GR T ++ P PI
Sbjct 77 NGLYVSNRRVPVVDIHDGQRINIGNPDGPALDFEVGRRQQGSVGRPPPT-TAMPVPPI 133
>gi|254820360|ref|ZP_05225361.1| hypothetical protein MintA_10546 [Mycobacterium intracellulare
ATCC 13950]
Length=181
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/116 (52%), Positives = 86/116 (75%), Gaps = 4/116 (3%)
Query 11 VRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFV 70
+R + +++ FAAG DVV+G DLRAD+RVAHPLI+R HL++R+D+G W+A+DN S +G++
Sbjct 1 MRYEGAERTFAAGNDVVIGRDLRADVRVAHPLISRTHLIVRYDQGRWVAVDNGSLNGLYA 60
Query 71 DGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----SRPGSPI 122
+ +RV +DI DG+ +N+G P GP +TFEVG HQG GR T S S PG+P+
Sbjct 61 NNRRVPVIDIQDGMRVNVGNPDGPALTFEVGRHQGSAGRPPLTTSIPIVSTPGAPL 116
>gi|240169068|ref|ZP_04747727.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
kansasii ATCC 12478]
Length=846
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/113 (59%), Positives = 79/113 (70%), Gaps = 0/113 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
M+ PPVLTV Q+ FAAG D++VGSDLRADM V+HP ++RAHLLLRFD G W+AI
Sbjct 1 MNTVAPPVLTVLGLGPQRTFAAGHDIIVGSDLRADMHVSHPSVSRAHLLLRFDHGRWMAI 60
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRT 113
DN S G FVD +RV V+I+ G INIG P GP +TFEVG + GR RT
Sbjct 61 DNGSHEGTFVDHRRVHAVEIHPGQRINIGSPDGPCLTFEVGQPEVPAGRPPRT 113
>gi|342861397|ref|ZP_08718045.1| ABC transporter ATP-binding protein [Mycobacterium colombiense
CECT 3035]
gi|342131297|gb|EGT84578.1| ABC transporter ATP-binding protein [Mycobacterium colombiense
CECT 3035]
Length=878
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/116 (55%), Positives = 83/116 (72%), Gaps = 4/116 (3%)
Query 11 VRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFV 70
+R + +++ FA G DVV+G DLRADMRVAHPLI+R HL++R+D+G WIAIDN S +G++V
Sbjct 1 MRYEGAERTFAPGNDVVIGRDLRADMRVAHPLISRNHLIVRYDQGRWIAIDNGSLNGLYV 60
Query 71 DGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----SRPGSPI 122
+RV VDI DGL +N+G P GP ++FEVG HQG GR T S S P P+
Sbjct 61 HNRRVPVVDIQDGLRVNMGNPDGPPLSFEVGRHQGTAGRPPLTTSIPIVSNPSEPL 116
>gi|118618514|ref|YP_906846.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
ulcerans Agy99]
gi|118570624|gb|ABL05375.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium
ulcerans Agy99]
Length=884
Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 80/105 (77%), Gaps = 1/105 (0%)
Query 6 PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQ 65
PPVLTVR + +++ FAAG DVV+G DLRAD+RVA PLI+R HLLLRFD+G WIAIDN S
Sbjct 14 PPVLTVRYNGAERTFAAGHDVVIGRDLRADVRVADPLISRVHLLLRFDQGRWIAIDNGSL 73
Query 66 SGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVG-HHQGIIGR 109
+G++++ +RV VDI DG +NIG P GP + F VG QG +GR
Sbjct 74 NGLYINNRRVPVVDIQDGQRVNIGNPDGPALDFGVGRRQQGSVGR 118
>gi|183982622|ref|YP_001850913.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
marinum M]
gi|183175948|gb|ACC41058.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium
marinum M]
Length=877
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 80/105 (77%), Gaps = 1/105 (0%)
Query 6 PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQ 65
PPVLTVR + +++ FAAG DVV+G DLRAD+RVA PLI+R HLLLRFD+G WIAIDN S
Sbjct 7 PPVLTVRYNGAERTFAAGHDVVIGRDLRADVRVADPLISRVHLLLRFDQGRWIAIDNGSL 66
Query 66 SGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVG-HHQGIIGR 109
+G++++ +RV VDI DG +NIG P GP + F VG QG +GR
Sbjct 67 NGLYINNRRVPVVDIQDGQRVNIGNPDGPALDFGVGRRQQGSVGR 111
>gi|118465124|ref|YP_882196.1| ABC transporter ATP-binding protein [Mycobacterium avium 104]
gi|118166411|gb|ABK67308.1| ABC transporter, ATP-binding protein [Mycobacterium avium 104]
Length=862
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/116 (53%), Positives = 84/116 (73%), Gaps = 4/116 (3%)
Query 11 VRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFV 70
+R D +++ FAAG DVV+G DLRAD+RVAHPLI+R HL++R+++G W+AIDN S +G++V
Sbjct 1 MRYDGAERTFAAGNDVVIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAIDNGSLNGLYV 60
Query 71 DGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----SRPGSPI 122
+ +RV VDI DG +N+G P GP ++FEVG HQG GR T S S P P+
Sbjct 61 NNRRVPMVDINDGTRVNMGNPDGPALSFEVGRHQGSAGRPPLTTSIPIVSTPSGPM 116
>gi|240169070|ref|ZP_04747729.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium
kansasii ATCC 12478]
Length=853
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/95 (63%), Positives = 74/95 (78%), Gaps = 0/95 (0%)
Query 26 VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT 85
+VVG DLRADMR+ HPLI+RAHLLLRFD+G W+AIDN+S +G F +G+RV VDI DG +
Sbjct 1 MVVGRDLRADMRITHPLISRAHLLLRFDQGRWLAIDNNSLNGTFCNGRRVPMVDIQDGQS 60
Query 86 INIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS 120
+NIG P GP +TFEVG H G+ GR +T S R G+
Sbjct 61 VNIGNPDGPLLTFEVGRHVGMAGRPPQTESMRVGT 95
>gi|118466082|ref|YP_883461.1| ABC transporter ATP-binding protein [Mycobacterium avium 104]
gi|118167369|gb|ABK68266.1| ABC transporter, ATP-binding protein [Mycobacterium avium 104]
Length=846
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/90 (65%), Positives = 72/90 (80%), Gaps = 0/90 (0%)
Query 26 VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT 85
+VVG DLRADMR+ HPLI+RAHLLLR+D+G W+AIDN S +G FV+G+RV V+I+DG
Sbjct 1 MVVGRDLRADMRITHPLISRAHLLLRYDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGCA 60
Query 86 INIGKPTGPWITFEVGHHQGIIGRLSRTPS 115
INIG P GP +TF+VG HQG+ GR RT S
Sbjct 61 INIGNPDGPLLTFDVGRHQGMAGRPPRTES 90
>gi|254820267|ref|ZP_05225268.1| hypothetical protein MintA_10081 [Mycobacterium intracellulare
ATCC 13950]
Length=116
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/90 (65%), Positives = 73/90 (82%), Gaps = 0/90 (0%)
Query 26 VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT 85
+VVG DLRADMR+ HPLI+RAHLLLRFD+G W+AIDN S +G FV+G+RV V+I+DG T
Sbjct 1 MVVGRDLRADMRITHPLISRAHLLLRFDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGQT 60
Query 86 INIGKPTGPWITFEVGHHQGIIGRLSRTPS 115
+NIG P GP +TF+VG HQG+ GR +T S
Sbjct 61 LNIGNPDGPLLTFDVGRHQGMAGRPPKTES 90
>gi|254776752|ref|ZP_05218268.1| hypothetical protein MaviaA2_19096 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=116
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/90 (65%), Positives = 72/90 (80%), Gaps = 0/90 (0%)
Query 26 VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT 85
+VVG DLRADMR+ HPLI+RAHLLLR+D+G W+AIDN S +G FV+G+RV V+I+DG
Sbjct 1 MVVGRDLRADMRITHPLISRAHLLLRYDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGCA 60
Query 86 INIGKPTGPWITFEVGHHQGIIGRLSRTPS 115
INIG P GP +TF+VG HQG+ GR RT S
Sbjct 61 INIGNPDGPLLTFDVGRHQGMAGRPPRTES 90
>gi|41407429|ref|NP_960265.1| hypothetical protein MAP1331c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41395781|gb|AAS03648.1| hypothetical protein MAP_1331c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=866
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 87/122 (72%), Gaps = 1/122 (0%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
++RP PP+LT+R D SQ+ FAAG +VVVG ++AD+R+ P I+RAHL+LRF++G W+AI
Sbjct 2 VTRPAPPILTIRHDGSQRSFAAGHEVVVGRHVQADVRIPDPRISRAHLILRFEQGRWLAI 61
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSR-TPSSRPG 119
DN S +G +++G R+ VDI+DG +I++G P GP +TF +G QG G R PS G
Sbjct 62 DNGSLNGTYLNGYRMPVVDIHDGQSIHVGNPHGPRLTFALGPQQGHAGHPGRPRPSHDSG 121
Query 120 SP 121
P
Sbjct 122 PP 123
>gi|296164507|ref|ZP_06847078.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295900107|gb|EFG79542.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length=850
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/121 (49%), Positives = 85/121 (71%), Gaps = 3/121 (2%)
Query 1 MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI 60
++R PP+LT+R D S + FAAG +VVVG D RAD+R+A P I+RAHL+LRFD+G W+AI
Sbjct 2 VTRAAPPILTIRHDGSHRSFAAGHEVVVGRDARADVRIADPRISRAHLILRFDQGRWLAI 61
Query 61 DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGII---GRLSRTPSSR 117
DN S +G +++G R+ +D++DG +I++G P GP +TF VG G GR ++P
Sbjct 62 DNGSLNGTYLNGYRMPVIDVHDGQSIHVGNPQGPRLTFAVGPRLGYSDRPGRARQSPEVG 121
Query 118 P 118
P
Sbjct 122 P 122
>gi|336459683|gb|EGO38617.1| ABC-type multidrug transport system, ATPase component [Mycobacterium
avium subsp. paratuberculosis S397]
Length=792
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/80 (63%), Positives = 63/80 (79%), Gaps = 0/80 (0%)
Query 36 MRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPW 95
MR+ HPLI+RAHLLLR+D+G W+AIDN S +G FV+G+RV V+I+DG INIG P GP
Sbjct 1 MRITHPLISRAHLLLRYDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGCAINIGNPDGPL 60
Query 96 ITFEVGHHQGIIGRLSRTPS 115
+TF+VG HQG+ GR RT S
Sbjct 61 LTFDVGRHQGMAGRPPRTES 80
>gi|342861572|ref|ZP_08718219.1| ABC transporter ATP-binding protein [Mycobacterium colombiense
CECT 3035]
gi|342131061|gb|EGT84350.1| ABC transporter ATP-binding protein [Mycobacterium colombiense
CECT 3035]
Length=841
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/74 (63%), Positives = 59/74 (80%), Gaps = 0/74 (0%)
Query 42 LIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVG 101
+I+RAHLLLRFD+G W+AIDN S +G FV+G+RV V+I+DG T+NIG P GP +TF+VG
Sbjct 1 MISRAHLLLRFDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGQTLNIGNPDGPLLTFDVG 60
Query 102 HHQGIIGRLSRTPS 115
HQG+ GR RT S
Sbjct 61 RHQGMAGRPPRTES 74
>gi|342860792|ref|ZP_08717442.1| ABC transporter ATP-binding protein [Mycobacterium colombiense
CECT 3035]
gi|342131816|gb|EGT85073.1| ABC transporter ATP-binding protein [Mycobacterium colombiense
CECT 3035]
Length=887
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/97 (52%), Positives = 69/97 (72%), Gaps = 1/97 (1%)
Query 26 VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT 85
+VVG D++AD+R+A P I+RAHL+LRFD+G W+AIDN S +G +++G R+ VDI+DG +
Sbjct 1 MVVGRDVQADVRIADPRISRAHLILRFDQGRWLAIDNGSLNGTYLNGYRMPVVDIHDGQS 60
Query 86 INIGKPTGPWITFEVGHHQGIIGRLSRT-PSSRPGSP 121
I+IG P GP +TF +G QG G R PS G P
Sbjct 61 IHIGNPQGPRLTFAIGPQQGHAGHPQRIRPSHDSGPP 97
>gi|254820993|ref|ZP_05225994.1| hypothetical protein MintA_13745 [Mycobacterium intracellulare
ATCC 13950]
Length=839
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/97 (50%), Positives = 70/97 (73%), Gaps = 1/97 (1%)
Query 26 VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT 85
+VVG D +AD+++A P I+RAHL+LRFD+G W+AIDN S +G +++G R+ +DI+DG +
Sbjct 1 MVVGRDAQADVQIADPRISRAHLILRFDQGRWLAIDNGSLNGTYLNGYRMPVIDIHDGQS 60
Query 86 INIGKPTGPWITFEVGHHQGIIGRLSRT-PSSRPGSP 121
I++G P GP +TF +G QG R +RT PS G P
Sbjct 61 IHVGNPRGPHLTFAIGPRQGQATRPARTRPSHDSGPP 97
Lambda K H
0.322 0.139 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127525862838
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40