BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv3360

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610496|ref|NP_217877.1|  hypothetical protein Rv3360 [Mycoba...   248    3e-64
gi|306809366|ref|ZP_07446034.1|  hypothetical protein TMGG_03839 ...   245    1e-63
gi|167967344|ref|ZP_02549621.1|  hypothetical protein MtubH3_0462...   232    2e-59
gi|296165924|ref|ZP_06848398.1|  FHA domain protein [Mycobacteriu...   166    1e-39
gi|183981195|ref|YP_001849486.1|  transmembrane ATP-binding prote...   160    5e-38
gi|240169069|ref|ZP_04747728.1|  ABC transporter, ATP-binding pro...   156    8e-37
gi|342861573|ref|ZP_08718220.1|  ABC transporter ATP-binding prot...   156    8e-37
gi|183981196|ref|YP_001849487.1|  transmembrane ATP-binding prote...   156    1e-36
gi|336459682|gb|EGO38616.1|  ABC-type multidrug transport system,...   155    1e-36
gi|41409564|ref|NP_962400.1|  hypothetical protein MAP3466 [Mycob...   155    2e-36
gi|118617100|ref|YP_905432.1|  transmembrane ATP-binding protein ...   153    6e-36
gi|108798172|ref|YP_638369.1|  FHA domain-containing protein [Myc...   153    9e-36
gi|41409563|ref|NP_962399.1|  hypothetical protein MAP3465 [Mycob...   152    1e-35
gi|126433830|ref|YP_001069521.1|  ABC transporter-like protein [M...   152    2e-35
gi|296168833|ref|ZP_06850506.1|  ABC superfamily ATP binding cass...   151    2e-35
gi|118471926|ref|YP_886019.1|  ABC transporter ATP-binding protei...   151    3e-35
gi|254822556|ref|ZP_05227557.1|  hypothetical protein MintA_21684...   150    8e-35
gi|254776754|ref|ZP_05218270.1|  ABC transporter, ATP-binding pro...   148    2e-34
gi|118463443|ref|YP_883462.1|  ABC transporter ATP-binding protei...   148    2e-34
gi|145225458|ref|YP_001136136.1|  ABC transporter-like protein [M...   146    8e-34
gi|120402553|ref|YP_952382.1|  ABC transporter--like protein [Myc...   143    6e-33
gi|289443210|ref|ZP_06432954.1|  conserved transmembrane ATP-bind...   142    2e-32
gi|298525245|ref|ZP_07012654.1|  conserved hypothetical protein [...   142    2e-32
gi|15608885|ref|NP_216263.1|  transmembrane ATP-binding protein A...   142    2e-32
gi|344219569|gb|AEN00200.1|  transmembrane ATP-binding protein AB...   142    2e-32
gi|15841211|ref|NP_336248.1|  ABC transporter, ATP-binding protei...   142    2e-32
gi|289757857|ref|ZP_06517235.1|  transmembrane ATP-binding protei...   141    3e-32
gi|336457706|gb|EGO36706.1|  ABC-type multidrug transport system,...   139    2e-31
gi|41407555|ref|NP_960391.1|  hypothetical protein MAP1457 [Mycob...   138    2e-31
gi|254775457|ref|ZP_05216973.1|  ABC transporter, ATP-binding pro...   138    2e-31
gi|296164688|ref|ZP_06847254.1|  ABC superfamily ATP binding cass...   137    4e-31
gi|333991836|ref|YP_004524450.1|  transmembrane ATP-binding prote...   135    2e-30
gi|254821141|ref|ZP_05226142.1|  ABC transporter related protein ...   133    8e-30
gi|240172661|ref|ZP_04751320.1|  transmembrane ATP-binding protei...   130    5e-29
gi|254820360|ref|ZP_05225361.1|  hypothetical protein MintA_10546...   130    5e-29
gi|240169068|ref|ZP_04747727.1|  transmembrane ATP-binding protei...   128    3e-28
gi|342861397|ref|ZP_08718045.1|  ABC transporter ATP-binding prot...   127    4e-28
gi|118618514|ref|YP_906846.1|  transmembrane ATP-binding protein ...   127    5e-28
gi|183982622|ref|YP_001850913.1|  transmembrane ATP-binding prote...   127    6e-28
gi|118465124|ref|YP_882196.1|  ABC transporter ATP-binding protei...   127    6e-28
gi|240169070|ref|ZP_04747729.1|  transmembrane ATP-binding protei...   124    4e-27
gi|118466082|ref|YP_883461.1|  ABC transporter ATP-binding protei...   124    4e-27
gi|254820267|ref|ZP_05225268.1|  hypothetical protein MintA_10081...   123    1e-26
gi|254776752|ref|ZP_05218268.1|  hypothetical protein MaviaA2_190...   122    2e-26
gi|41407429|ref|NP_960265.1|  hypothetical protein MAP1331c [Myco...   122    2e-26
gi|296164507|ref|ZP_06847078.1|  ABC superfamily ATP binding cass...   120    5e-26
gi|336459683|gb|EGO38617.1|  ABC-type multidrug transport system,...   110    9e-23
gi|342861572|ref|ZP_08718219.1|  ABC transporter ATP-binding prot...   100    1e-19
gi|342860792|ref|ZP_08717442.1|  ABC transporter ATP-binding prot...  99.8    1e-19
gi|254820993|ref|ZP_05225994.1|  hypothetical protein MintA_13745...  97.8    5e-19


>gi|15610496|ref|NP_217877.1| hypothetical protein Rv3360 [Mycobacterium tuberculosis H37Rv]
 gi|15842956|ref|NP_337993.1| hypothetical protein MT3468 [Mycobacterium tuberculosis CDC1551]
 gi|31794543|ref|NP_857036.1| hypothetical protein Mb3395 [Mycobacterium bovis AF2122/97]
 73 more sequence titles
 Length=122

 Score =  248 bits (632),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI
Sbjct  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS  120
            DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS
Sbjct  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS  120

Query  121  PI  122
            PI
Sbjct  121  PI  122


>gi|306809366|ref|ZP_07446034.1| hypothetical protein TMGG_03839 [Mycobacterium tuberculosis SUMu007]
 gi|306969471|ref|ZP_07482132.1| hypothetical protein TMIG_03634 [Mycobacterium tuberculosis SUMu009]
 gi|308344340|gb|EFP33191.1| hypothetical protein TMGG_03839 [Mycobacterium tuberculosis SUMu007]
 gi|308352997|gb|EFP41848.1| hypothetical protein TMIG_03634 [Mycobacterium tuberculosis SUMu009]
Length=122

 Score =  245 bits (626),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 121/122 (99%), Positives = 121/122 (99%), Gaps = 0/122 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIA AHLLLRFDRGNWIAI
Sbjct  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIAHAHLLLRFDRGNWIAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS  120
            DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS
Sbjct  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS  120

Query  121  PI  122
            PI
Sbjct  121  PI  122


>gi|167967344|ref|ZP_02549621.1| hypothetical protein MtubH3_04622 [Mycobacterium tuberculosis 
H37Ra]
 gi|254552462|ref|ZP_05142909.1| hypothetical protein Mtube_18760 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 gi|323717981|gb|EGB27168.1| hypothetical protein TMMG_04027 [Mycobacterium tuberculosis CDC1551A]
Length=115

 Score =  232 bits (591),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 114/115 (99%), Positives = 115/115 (100%), Gaps = 0/115 (0%)

Query  8    VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG  67
            +LTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG
Sbjct  1    MLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG  60

Query  68   MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGSPI  122
            MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGSPI
Sbjct  61   MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGSPI  115


>gi|296165924|ref|ZP_06848398.1| FHA domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898721|gb|EFG78253.1| FHA domain protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=132

 Score =  166 bits (420),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 82/118 (70%), Positives = 94/118 (80%), Gaps = 0/118 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            M+    PVLTVRSDRS+  FAAGRDVVVGSDLRAD+RVAHPL+ARAHLLLRFD G W+A+
Sbjct  1    MTEAAEPVLTVRSDRSKGSFAAGRDVVVGSDLRADLRVAHPLVARAHLLLRFDHGKWVAL  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRP  118
            DN S +G++V+GQRV  VDI DG TINIGKP GP ITFE+GHH G +G L  T  S P
Sbjct  61   DNKSLNGVYVNGQRVPLVDIEDGQTINIGKPDGPRITFEIGHHTGTVGMLPPTTESIP  118


>gi|183981195|ref|YP_001849486.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
marinum M]
 gi|183174521|gb|ACC39631.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium 
marinum M]
Length=841

 Score =  160 bits (406),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 79/119 (67%), Positives = 97/119 (82%), Gaps = 1/119 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            M+R   PVLTVRS  SQ+ FAAG DV+VGSDL AD+RVAHPLI RAHLLLRF++G+W+AI
Sbjct  1    MTRAQRPVLTVRSGPSQRSFAAGPDVIVGSDLHADLRVAHPLIDRAHLLLRFEQGSWVAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPG  119
            DN+SQSG++VDG+RV  +DI DGL +N+G+  GP ITFEVGHHQG+IG L   P + PG
Sbjct  61   DNNSQSGIYVDGRRVPLIDIRDGLAMNLGRADGPRITFEVGHHQGVIGLLP-PPETMPG  118


>gi|240169069|ref|ZP_04747728.1| ABC transporter, ATP-binding protein [Mycobacterium kansasii 
ATCC 12478]
Length=813

 Score =  156 bits (395),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 76/114 (67%), Positives = 96/114 (85%), Gaps = 1/114 (0%)

Query  8    VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG  67
            +LTVRSDRSQ+ FA G D +VGSDLRAD+RVAHPL+A+AH+++RF++GNWIAIDN S++G
Sbjct  1    MLTVRSDRSQRSFAPGADAIVGSDLRADLRVAHPLVAQAHVVVRFEQGNWIAIDN-SRTG  59

Query  68   MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGSP  121
            MFVDG+RV  VDI DGL +N+G+P GP I+FEVGHH+GIIG L +T    PG P
Sbjct  60   MFVDGRRVPLVDIRDGLVVNLGRPDGPRISFEVGHHRGIIGLLPQTGFPPPGGP  113


>gi|342861573|ref|ZP_08718220.1| ABC transporter ATP-binding protein [Mycobacterium colombiense 
CECT 3035]
 gi|342131062|gb|EGT84351.1| ABC transporter ATP-binding protein [Mycobacterium colombiense 
CECT 3035]
Length=846

 Score =  156 bits (395),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 77/111 (70%), Positives = 91/111 (82%), Gaps = 0/111 (0%)

Query  8    VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG  67
            +LT RSDRS+  FAAGRDVVVGSDLRAD+RVAHPLIARAH+LLRFD+G W A+DN+S +G
Sbjct  1    MLTARSDRSEGSFAAGRDVVVGSDLRADLRVAHPLIARAHVLLRFDQGRWRAVDNNSLNG  60

Query  68   MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRP  118
            +++DGQRV  VDI+DG TINIGKP GP ITF+VG H G +G L  T  S P
Sbjct  61   VYLDGQRVPVVDIHDGQTINIGKPDGPRITFKVGQHTGSVGLLPPTTKSFP  111


 Score = 34.3 bits (77),  Expect = 6.6, Method: Compositional matrix adjust.
 Identities = 25/87 (29%), Positives = 37/87 (43%), Gaps = 7/87 (8%)

Query  23   GRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYD  82
            GR   +G  L  D+ V   L +R H  L          D +S +G FV+G RV    + D
Sbjct  213  GRTAWIGRALNNDIVVPDVLASRHHAFLNPTATGAEIRDANSSNGTFVNGVRVGSAALSD  272

Query  83   GLTINIGKPTGPWITFEVGHHQGIIGR  109
            G  + IG         ++  H G++ R
Sbjct  273  GDVVTIGN-------VDLVFHNGVLVR  292


>gi|183981196|ref|YP_001849487.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
marinum M]
 gi|183174522|gb|ACC39632.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium 
marinum M]
Length=873

 Score =  156 bits (394),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 74/117 (64%), Positives = 92/117 (79%), Gaps = 0/117 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            M +P PP LTVR D S++ FAAG DVVVG DLRADMR+ HPLI+RAHLLLRFD+G W+AI
Sbjct  1    MPQPAPPALTVRCDGSERTFAAGHDVVVGRDLRADMRITHPLISRAHLLLRFDQGRWLAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR  117
            DN+S +G FV+G+RV  V+IYDG ++NIG P GP ++FEVG H G+ GR  +T S R
Sbjct  61   DNNSLNGTFVNGRRVPMVEIYDGQSLNIGNPDGPLLSFEVGRHVGMAGRPPQTESMR  117


>gi|336459682|gb|EGO38616.1| ABC-type multidrug transport system, ATPase component [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=409

 Score =  155 bits (393),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 74/107 (70%), Positives = 89/107 (84%), Gaps = 0/107 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            M+R   PVLT RSDRS+  FAAGRDVVVGSDLRAD+RVAHPLIARAH+LLRF++G W A+
Sbjct  1    MTRSAQPVLTARSDRSEGSFAAGRDVVVGSDLRADLRVAHPLIARAHVLLRFEQGRWRAV  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGII  107
            DN++ +G++VDG+RV  VDI DG TINIGKP GP ITFE+G H G +
Sbjct  61   DNNTLNGVYVDGRRVPAVDIQDGQTINIGKPDGPRITFEIGQHTGAV  107


>gi|41409564|ref|NP_962400.1| hypothetical protein MAP3466 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398395|gb|AAS06016.1| hypothetical protein MAP_3466 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=822

 Score =  155 bits (392),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 74/107 (70%), Positives = 89/107 (84%), Gaps = 0/107 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            M+R   PVLT RSDRS+  FAAGRDVVVGSDLRAD+RVAHPLIARAH+LLRF++G W A+
Sbjct  4    MTRSAQPVLTARSDRSEGSFAAGRDVVVGSDLRADLRVAHPLIARAHVLLRFEQGRWRAV  63

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGII  107
            DN++ +G++VDG+RV  VDI DG TINIGKP GP ITFE+G H G +
Sbjct  64   DNNTLNGVYVDGRRVPAVDIQDGQTINIGKPDGPRITFEIGQHTGAV  110


>gi|118617100|ref|YP_905432.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
ulcerans Agy99]
 gi|118569210|gb|ABL03961.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium 
ulcerans Agy99]
Length=842

 Score =  153 bits (387),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 76/119 (64%), Positives = 94/119 (79%), Gaps = 1/119 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            M+R   PVLTVRS  SQ+ FAAG DV+VGSDL AD+RVAHPLI RAHLLLRF++G+W+ I
Sbjct  2    MTRAQQPVLTVRSGPSQRSFAAGPDVIVGSDLHADLRVAHPLIDRAHLLLRFEQGSWVPI  61

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPG  119
            DN+SQS ++VD +RV  +DI DGL +N+G+  GP ITFEVGHHQG+IG L   P + PG
Sbjct  62   DNNSQSRIYVDARRVPLIDIRDGLAMNLGRADGPRITFEVGHHQGVIGLLP-PPETMPG  119


>gi|108798172|ref|YP_638369.1| FHA domain-containing protein [Mycobacterium sp. MCS]
 gi|119867268|ref|YP_937220.1| ABC transporter-like protein [Mycobacterium sp. KMS]
 gi|108768591|gb|ABG07313.1| FHA domain containing protein [Mycobacterium sp. MCS]
 gi|119693357|gb|ABL90430.1| ABC transporter related protein [Mycobacterium sp. KMS]
Length=866

 Score =  153 bits (386),  Expect = 9e-36, Method: Compositional matrix adjust.
 Identities = 73/113 (65%), Positives = 89/113 (79%), Gaps = 0/113 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MSRP PP LTVR + S + FA G DVV+G DLRAD+R+AHPLI+RAHL+LRFD+G W+AI
Sbjct  1    MSRPSPPALTVRYEGSTRTFAPGNDVVIGRDLRADVRIAHPLISRAHLVLRFDQGRWVAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRT  113
            DN S +GMFV+G+RV  VDI DG ++NIG P GP +TFEVG HQG  GR  +T
Sbjct  61   DNGSLNGMFVNGRRVPAVDIRDGQSLNIGNPDGPQLTFEVGRHQGSAGRPPQT  113


>gi|41409563|ref|NP_962399.1| hypothetical protein MAP3465 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41398394|gb|AAS06015.1| hypothetical protein MAP_3465 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=873

 Score =  152 bits (384),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 73/115 (64%), Positives = 89/115 (78%), Gaps = 0/115 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MS P PP LTV  + S++ FAAG DVVVG DLRADMR+ HPLI+RAHLLLR+D+G W+AI
Sbjct  3    MSAPAPPALTVHHEGSERTFAAGHDVVVGRDLRADMRITHPLISRAHLLLRYDQGKWLAI  62

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS  115
            DN S +G FV+G+RV  V+I+DG  INIG P GP +TF+VG HQG+ GR  RT S
Sbjct  63   DNGSLNGTFVNGRRVPVVEIHDGCAINIGNPDGPLLTFDVGRHQGMAGRPPRTES  117


>gi|126433830|ref|YP_001069521.1| ABC transporter-like protein [Mycobacterium sp. JLS]
 gi|126233630|gb|ABN97030.1| ABC transporter related protein [Mycobacterium sp. JLS]
Length=866

 Score =  152 bits (384),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 72/113 (64%), Positives = 89/113 (79%), Gaps = 0/113 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MSRP PP LTVR + S + FA G DVV+G DLRAD+R+AHPLI+RAHL+LRFD+G W+AI
Sbjct  1    MSRPSPPALTVRYEGSTRTFAPGNDVVIGRDLRADVRIAHPLISRAHLVLRFDQGRWVAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRT  113
            DN S +GMFV+G+RV  VD+ DG ++NIG P GP +TFEVG HQG  GR  +T
Sbjct  61   DNGSLNGMFVNGRRVPAVDLRDGQSLNIGNPDGPQLTFEVGRHQGSAGRPPQT  113


>gi|296168833|ref|ZP_06850506.1| ABC superfamily ATP binding cassette transporter, ABC protein 
[Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896492|gb|EFG76141.1| ABC superfamily ATP binding cassette transporter, ABC protein 
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length=149

 Score =  151 bits (382),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 75/115 (66%), Positives = 90/115 (79%), Gaps = 0/115 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MS P PPVLTVR D S++ FAAG DVVVG DLRADMR+ HPLI+RAHLLLRFD+G W+AI
Sbjct  1    MSAPAPPVLTVRFDGSERTFAAGHDVVVGRDLRADMRITHPLISRAHLLLRFDQGRWLAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS  115
            DN S +G FV+G+RV  V+I+DG  +NIG P GP + FEVG HQG+ GR  +T S
Sbjct  61   DNGSLNGTFVNGRRVPVVEIHDGQCLNIGNPDGPQLLFEVGRHQGMAGRPPQTES  115


>gi|118471926|ref|YP_886019.1| ABC transporter ATP-binding protein [Mycobacterium smegmatis 
str. MC2 155]
 gi|118173213|gb|ABK74109.1| ABC transporter, ATP-binding protein [Mycobacterium smegmatis 
str. MC2 155]
Length=899

 Score =  151 bits (382),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 70/109 (65%), Positives = 87/109 (80%), Gaps = 0/109 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MSRP PP LTVR + S + FA G DVV+G DLRAD+R+AHPLI+RAHL+LRFD+G W+AI
Sbjct  1    MSRPSPPALTVRYEGSTRTFAPGSDVVIGRDLRADVRIAHPLISRAHLVLRFDQGRWVAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGR  109
            DN S +GM+V+G+RVS VD+ DG  +NIG P GP ++FEVG HQG  GR
Sbjct  61   DNGSLNGMYVNGRRVSSVDLQDGQVLNIGNPDGPQLSFEVGRHQGSAGR  109


>gi|254822556|ref|ZP_05227557.1| hypothetical protein MintA_21684 [Mycobacterium intracellulare 
ATCC 13950]
Length=783

 Score =  150 bits (378),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 71/101 (71%), Positives = 86/101 (86%), Gaps = 0/101 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            M+RP  P+LT RS+ SQ  F AGRDVVVG+DLRAD+RVAHPLIARAHLLLRFDRG W+A+
Sbjct  1    MTRPAQPLLTARSEHSQGSFTAGRDVVVGNDLRADLRVAHPLIARAHLLLRFDRGRWLAV  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVG  101
            DN++ +G+++DG+RV  VDI DG +INIGKP GP ITFEVG
Sbjct  61   DNNTLNGVYLDGRRVPVVDIRDGQSINIGKPDGPRITFEVG  101


>gi|254776754|ref|ZP_05218270.1| ABC transporter, ATP-binding protein [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=812

 Score =  148 bits (374),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 85/100 (85%), Gaps = 0/100 (0%)

Query  8    VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG  67
            +LT RSDRS+  FAAGRDVVVGSDLRAD+RVAHPLIARAH+LLRF++G W A+DN++ +G
Sbjct  1    MLTARSDRSEGSFAAGRDVVVGSDLRADLRVAHPLIARAHVLLRFEQGRWRAVDNNTLNG  60

Query  68   MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGII  107
            ++VDG+RV  VDI DG TINIGKP GP ITFE+G H G +
Sbjct  61   VYVDGRRVPAVDIQDGQTINIGKPDGPRITFEIGQHTGAV  100


>gi|118463443|ref|YP_883462.1| ABC transporter ATP-binding protein [Mycobacterium avium 104]
 gi|118164730|gb|ABK65627.1| ABC transporter, ATP-binding protein [Mycobacterium avium 104]
Length=812

 Score =  148 bits (374),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 85/100 (85%), Gaps = 0/100 (0%)

Query  8    VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG  67
            +LT RSDRS+  FAAGRDVVVGSDLRAD+RVAHPLIARAH+LLRF++G W A+DN++ +G
Sbjct  1    MLTARSDRSEGSFAAGRDVVVGSDLRADLRVAHPLIARAHVLLRFEQGRWRAVDNNTLNG  60

Query  68   MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGII  107
            ++VDG+RV  VDI DG TINIGKP GP ITFE+G H G +
Sbjct  61   VYVDGRRVPAVDIQDGQTINIGKPDGPRITFEIGQHTGAV  100


>gi|145225458|ref|YP_001136136.1| ABC transporter-like protein [Mycobacterium gilvum PYR-GCK]
 gi|315445811|ref|YP_004078690.1| ABC-type multidrug transporter, ATPase component [Mycobacterium 
sp. Spyr1]
 gi|145217944|gb|ABP47348.1| ABC transporter related protein [Mycobacterium gilvum PYR-GCK]
 gi|315264114|gb|ADU00856.1| ABC-type multidrug transport system, ATPase component [Mycobacterium 
sp. Spyr1]
Length=869

 Score =  146 bits (369),  Expect = 8e-34, Method: Compositional matrix adjust.
 Identities = 75/122 (62%), Positives = 88/122 (73%), Gaps = 4/122 (3%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MSRP  P LTVR D S   FAAG DVVVG DLRAD+R+AHPLI+RAHL+LRFD+G WIAI
Sbjct  1    MSRPGSPALTVRYDGSTHTFAAGNDVVVGRDLRADVRIAHPLISRAHLVLRFDQGRWIAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS  120
            DN S +GM+V+G+RV   DI DG  ++IG P GP +TFEVG HQG  G    TP S    
Sbjct  61   DNGSLNGMYVNGRRVPAADISDGGQLHIGNPDGPLLTFEVGRHQGSAG----TPPSTTAV  116

Query  121  PI  122
            P+
Sbjct  117  PV  118


>gi|120402553|ref|YP_952382.1| ABC transporter--like protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955371|gb|ABM12376.1| ABC transporter-related protein [Mycobacterium vanbaalenii PYR-1]
Length=861

 Score =  143 bits (361),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 68/108 (63%), Positives = 83/108 (77%), Gaps = 0/108 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MSRP  P LTVR D S + FAAG DVVVG DLRAD+R+AHPLI+RAHL+LRFD+G W+AI
Sbjct  1    MSRPATPALTVRYDGSTRSFAAGNDVVVGRDLRADIRIAHPLISRAHLVLRFDQGRWLAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIG  108
            DN S +GM+V+G+RV   +I DG  ++IG P GP + FEVG HQG  G
Sbjct  61   DNGSLNGMYVNGRRVPAAEITDGTQVHIGNPDGPLLVFEVGRHQGSAG  108


>gi|289443210|ref|ZP_06432954.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium 
tuberculosis T46]
 gi|289416129|gb|EFD13369.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium 
tuberculosis T46]
Length=865

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)

Query  1    MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA  59
            MS+P  PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct  3    MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA  62

Query  60   IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR  117
            IDN S +G++++ +RV  VDIYD   ++IG P GP + FEVG H+G  GR  +T S R
Sbjct  63   IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR  120


>gi|298525245|ref|ZP_07012654.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495039|gb|EFI30333.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=864

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)

Query  1    MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA  59
            MS+P  PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct  4    MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA  63

Query  60   IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR  117
            IDN S +G++++ +RV  VDIYD   ++IG P GP + FEVG H+G  GR  +T S R
Sbjct  64   IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR  121


>gi|15608885|ref|NP_216263.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
tuberculosis H37Rv]
 gi|31792935|ref|NP_855428.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
bovis AF2122/97]
 gi|121637655|ref|YP_977878.1| putative transmembrane ATP-binding protein ABC transporter [Mycobacterium 
bovis BCG str. Pasteur 1173P2]
 41 more sequence titles
 Length=865

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)

Query  1    MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA  59
            MS+P  PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct  3    MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA  62

Query  60   IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR  117
            IDN S +G++++ +RV  VDIYD   ++IG P GP + FEVG H+G  GR  +T S R
Sbjct  63   IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR  120


>gi|344219569|gb|AEN00200.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
tuberculosis CTRI-2]
Length=865

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)

Query  1    MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA  59
            MS+P  PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct  3    MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA  62

Query  60   IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR  117
            IDN S +G++++ +RV  VDIYD   ++IG P GP + FEVG H+G  GR  +T S R
Sbjct  63   IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR  120


>gi|15841211|ref|NP_336248.1| ABC transporter, ATP-binding protein [Mycobacterium tuberculosis 
CDC1551]
 gi|148822954|ref|YP_001287708.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
tuberculosis F11]
 gi|167968638|ref|ZP_02550915.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium 
tuberculosis H37Ra]
 8 more sequence titles
 Length=863

 Score =  142 bits (358),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)

Query  1    MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA  59
            MS+P  PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct  1    MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA  60

Query  60   IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR  117
            IDN S +G++++ +RV  VDIYD   ++IG P GP + FEVG H+G  GR  +T S R
Sbjct  61   IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR  118


>gi|289757857|ref|ZP_06517235.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
tuberculosis T85]
 gi|289713421|gb|EFD77433.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
tuberculosis T85]
Length=201

 Score =  141 bits (356),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 72/118 (62%), Positives = 91/118 (78%), Gaps = 1/118 (0%)

Query  1    MSRPH-PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIA  59
            MS+P  PPVLTVR + S++ FAAG DVVVG DLRAD+RVAHPLI+RAHLLLRFD+G W+A
Sbjct  1    MSQPAAPPVLTVRYEGSERTFAAGHDVVVGRDLRADVRVAHPLISRAHLLLRFDQGRWVA  60

Query  60   IDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPSSR  117
            IDN S +G++++ +RV  VDIYD   ++IG P GP + FEVG H+G  GR  +T S R
Sbjct  61   IDNGSLNGLYLNNRRVPVVDIYDAQRVHIGNPDGPALDFEVGRHRGSAGRPPQTTSIR  118


>gi|336457706|gb|EGO36706.1| ABC-type multidrug transport system, ATPase component [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=460

 Score =  139 bits (349),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 68/126 (54%), Positives = 90/126 (72%), Gaps = 4/126 (3%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MS P  P LTVR D +++ FAAG DVV+G DLRAD+RVAHPLI+R HL++R+++G W+AI
Sbjct  1    MSPPATPALTVRYDGAERTFAAGNDVVIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----S  116
            DN S +G++V+ +RV  VDI DG  +N+G P GP ++FEVG HQG  GR   T S    S
Sbjct  61   DNGSLNGLYVNNRRVPMVDINDGTRVNMGNPDGPALSFEVGRHQGSAGRPPLTTSIPIVS  120

Query  117  RPGSPI  122
             P  P+
Sbjct  121  TPSGPM  126


>gi|41407555|ref|NP_960391.1| hypothetical protein MAP1457 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395908|gb|AAS03774.1| hypothetical protein MAP_1457 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=854

 Score =  138 bits (348),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 68/126 (54%), Positives = 90/126 (72%), Gaps = 4/126 (3%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MS P  P LTVR D +++ FAAG DVV+G DLRAD+RVAHPLI+R HL++R+++G W+AI
Sbjct  4    MSPPATPALTVRYDGAERTFAAGNDVVIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAI  63

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----S  116
            DN S +G++V+ +RV  VDI DG  +N+G P GP ++FEVG HQG  GR   T S    S
Sbjct  64   DNGSLNGLYVNNRRVPMVDINDGTRVNMGNPDGPALSFEVGRHQGSAGRPPLTTSIPIVS  123

Query  117  RPGSPI  122
             P  P+
Sbjct  124  TPSGPM  129


>gi|254775457|ref|ZP_05216973.1| ABC transporter, ATP-binding protein [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=872

 Score =  138 bits (348),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 68/126 (54%), Positives = 90/126 (72%), Gaps = 4/126 (3%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            MS P  P LTVR D +++ FAAG DVV+G DLRAD+RVAHPLI+R HL++R+++G W+AI
Sbjct  1    MSPPATPALTVRYDGAERTFAAGNDVVIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----S  116
            DN S +G++V+ +RV  VDI DG  +N+G P GP ++FEVG HQG  GR   T S    S
Sbjct  61   DNGSLNGLYVNNRRVPMVDINDGTRVNMGNPDGPALSFEVGRHQGSAGRPPLTTSIPIVS  120

Query  117  RPGSPI  122
             P  P+
Sbjct  121  TPSGPM  126


>gi|296164688|ref|ZP_06847254.1| ABC superfamily ATP binding cassette transporter, ABC protein 
[Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899996|gb|EFG79436.1| ABC superfamily ATP binding cassette transporter, ABC protein 
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length=887

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 67/108 (63%), Positives = 82/108 (76%), Gaps = 0/108 (0%)

Query  8    VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG  67
            +LTVR + S++ FAAG DV +G DLRAD+RVAHPLI+R HL++RFD+G WIAIDN S +G
Sbjct  1    MLTVRYEGSERTFAAGNDVAIGRDLRADVRVAHPLISRTHLIVRFDQGRWIAIDNGSLNG  60

Query  68   MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS  115
            +FV+ QRV  VDI DG  +NIG P GP +TFEVG HQG  GR   T S
Sbjct  61   LFVNHQRVPTVDIQDGTRVNIGNPDGPALTFEVGRHQGTAGRPPLTTS  108


>gi|333991836|ref|YP_004524450.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
sp. JDM601]
 gi|333487804|gb|AEF37196.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
sp. JDM601]
Length=879

 Score =  135 bits (341),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 67/117 (58%), Positives = 87/117 (75%), Gaps = 3/117 (2%)

Query  8    VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG  67
            +LTVR D SQ  F+AG DVV+G DLRAD+R+ HPL++RAHLLLRF++G W+ IDN S +G
Sbjct  1    MLTVRYDGSQGTFSAGHDVVIGRDLRADIRIPHPLVSRAHLLLRFEQGRWLGIDNGSLNG  60

Query  68   MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS---SRPGSP  121
            ++V+GQRV  VDI DG  +N+G P GP ++FEVG HQG  GR  +T S    +PG P
Sbjct  61   IYVNGQRVPMVDIRDGQCVNLGNPDGPRLSFEVGRHQGQAGRPPQTVSIQVPQPGQP  117


>gi|254821141|ref|ZP_05226142.1| ABC transporter related protein [Mycobacterium intracellulare 
ATCC 13950]
Length=105

 Score =  133 bits (335),  Expect = 8e-30, Method: Compositional matrix adjust.
 Identities = 65/103 (64%), Positives = 82/103 (80%), Gaps = 0/103 (0%)

Query  8    VLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSG  67
            +LTV+S+ SQ+ FA G D+VVGSDLRADMRVAHPLIARAHLLLRFD   WIAIDN S SG
Sbjct  1    MLTVQSEWSQRSFAPGHDIVVGSDLRADMRVAHPLIARAHLLLRFDGAKWIAIDNGSPSG  60

Query  68   MFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRL  110
            +FV+G RV  VDI+D  ++N+ +P GP ++F +G H G +G+L
Sbjct  61   IFVNGHRVRAVDIHDRQSLNLARPDGPRLSFGIGRHDGAVGQL  103


>gi|240172661|ref|ZP_04751320.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
kansasii ATCC 12478]
Length=150

 Score =  130 bits (328),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 70/118 (60%), Positives = 87/118 (74%), Gaps = 2/118 (1%)

Query  6    PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQ  65
            PPVLTVR + +++ FAAG DVV+G DLRAD+RVA PLI+R HLLLRFD+G WIAIDN S 
Sbjct  17   PPVLTVRYNGAERTFAAGHDVVIGRDLRADVRVADPLISRVHLLLRFDQGRWIAIDNGSL  76

Query  66   SGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVG-HHQGIIGRLSRTPSSRPGSPI  122
            +G++V  +RV  VDI+DG  INIG P GP + FEVG   QG +GR   T ++ P  PI
Sbjct  77   NGLYVSNRRVPVVDIHDGQRINIGNPDGPALDFEVGRRQQGSVGRPPPT-TAMPVPPI  133


>gi|254820360|ref|ZP_05225361.1| hypothetical protein MintA_10546 [Mycobacterium intracellulare 
ATCC 13950]
Length=181

 Score =  130 bits (328),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 60/116 (52%), Positives = 86/116 (75%), Gaps = 4/116 (3%)

Query  11   VRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFV  70
            +R + +++ FAAG DVV+G DLRAD+RVAHPLI+R HL++R+D+G W+A+DN S +G++ 
Sbjct  1    MRYEGAERTFAAGNDVVIGRDLRADVRVAHPLISRTHLIVRYDQGRWVAVDNGSLNGLYA  60

Query  71   DGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----SRPGSPI  122
            + +RV  +DI DG+ +N+G P GP +TFEVG HQG  GR   T S    S PG+P+
Sbjct  61   NNRRVPVIDIQDGMRVNVGNPDGPALTFEVGRHQGSAGRPPLTTSIPIVSTPGAPL  116


>gi|240169068|ref|ZP_04747727.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
kansasii ATCC 12478]
Length=846

 Score =  128 bits (322),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 66/113 (59%), Positives = 79/113 (70%), Gaps = 0/113 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            M+   PPVLTV     Q+ FAAG D++VGSDLRADM V+HP ++RAHLLLRFD G W+AI
Sbjct  1    MNTVAPPVLTVLGLGPQRTFAAGHDIIVGSDLRADMHVSHPSVSRAHLLLRFDHGRWMAI  60

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRT  113
            DN S  G FVD +RV  V+I+ G  INIG P GP +TFEVG  +   GR  RT
Sbjct  61   DNGSHEGTFVDHRRVHAVEIHPGQRINIGSPDGPCLTFEVGQPEVPAGRPPRT  113


>gi|342861397|ref|ZP_08718045.1| ABC transporter ATP-binding protein [Mycobacterium colombiense 
CECT 3035]
 gi|342131297|gb|EGT84578.1| ABC transporter ATP-binding protein [Mycobacterium colombiense 
CECT 3035]
Length=878

 Score =  127 bits (320),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 63/116 (55%), Positives = 83/116 (72%), Gaps = 4/116 (3%)

Query  11   VRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFV  70
            +R + +++ FA G DVV+G DLRADMRVAHPLI+R HL++R+D+G WIAIDN S +G++V
Sbjct  1    MRYEGAERTFAPGNDVVIGRDLRADMRVAHPLISRNHLIVRYDQGRWIAIDNGSLNGLYV  60

Query  71   DGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----SRPGSPI  122
              +RV  VDI DGL +N+G P GP ++FEVG HQG  GR   T S    S P  P+
Sbjct  61   HNRRVPVVDIQDGLRVNMGNPDGPPLSFEVGRHQGTAGRPPLTTSIPIVSNPSEPL  116


>gi|118618514|ref|YP_906846.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
ulcerans Agy99]
 gi|118570624|gb|ABL05375.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium 
ulcerans Agy99]
Length=884

 Score =  127 bits (319),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 80/105 (77%), Gaps = 1/105 (0%)

Query  6    PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQ  65
            PPVLTVR + +++ FAAG DVV+G DLRAD+RVA PLI+R HLLLRFD+G WIAIDN S 
Sbjct  14   PPVLTVRYNGAERTFAAGHDVVIGRDLRADVRVADPLISRVHLLLRFDQGRWIAIDNGSL  73

Query  66   SGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVG-HHQGIIGR  109
            +G++++ +RV  VDI DG  +NIG P GP + F VG   QG +GR
Sbjct  74   NGLYINNRRVPVVDIQDGQRVNIGNPDGPALDFGVGRRQQGSVGR  118


>gi|183982622|ref|YP_001850913.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
marinum M]
 gi|183175948|gb|ACC41058.1| conserved transmembrane ATP-binding protein ABC transporter [Mycobacterium 
marinum M]
Length=877

 Score =  127 bits (319),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 80/105 (77%), Gaps = 1/105 (0%)

Query  6    PPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQ  65
            PPVLTVR + +++ FAAG DVV+G DLRAD+RVA PLI+R HLLLRFD+G WIAIDN S 
Sbjct  7    PPVLTVRYNGAERTFAAGHDVVIGRDLRADVRVADPLISRVHLLLRFDQGRWIAIDNGSL  66

Query  66   SGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVG-HHQGIIGR  109
            +G++++ +RV  VDI DG  +NIG P GP + F VG   QG +GR
Sbjct  67   NGLYINNRRVPVVDIQDGQRVNIGNPDGPALDFGVGRRQQGSVGR  111


>gi|118465124|ref|YP_882196.1| ABC transporter ATP-binding protein [Mycobacterium avium 104]
 gi|118166411|gb|ABK67308.1| ABC transporter, ATP-binding protein [Mycobacterium avium 104]
Length=862

 Score =  127 bits (318),  Expect = 6e-28, Method: Compositional matrix adjust.
 Identities = 61/116 (53%), Positives = 84/116 (73%), Gaps = 4/116 (3%)

Query  11   VRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFV  70
            +R D +++ FAAG DVV+G DLRAD+RVAHPLI+R HL++R+++G W+AIDN S +G++V
Sbjct  1    MRYDGAERTFAAGNDVVIGRDLRADLRVAHPLISRTHLIVRYEQGRWVAIDNGSLNGLYV  60

Query  71   DGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSRTPS----SRPGSPI  122
            + +RV  VDI DG  +N+G P GP ++FEVG HQG  GR   T S    S P  P+
Sbjct  61   NNRRVPMVDINDGTRVNMGNPDGPALSFEVGRHQGSAGRPPLTTSIPIVSTPSGPM  116


>gi|240169070|ref|ZP_04747729.1| transmembrane ATP-binding protein ABC transporter [Mycobacterium 
kansasii ATCC 12478]
Length=853

 Score =  124 bits (312),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 59/95 (63%), Positives = 74/95 (78%), Gaps = 0/95 (0%)

Query  26   VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT  85
            +VVG DLRADMR+ HPLI+RAHLLLRFD+G W+AIDN+S +G F +G+RV  VDI DG +
Sbjct  1    MVVGRDLRADMRITHPLISRAHLLLRFDQGRWLAIDNNSLNGTFCNGRRVPMVDIQDGQS  60

Query  86   INIGKPTGPWITFEVGHHQGIIGRLSRTPSSRPGS  120
            +NIG P GP +TFEVG H G+ GR  +T S R G+
Sbjct  61   VNIGNPDGPLLTFEVGRHVGMAGRPPQTESMRVGT  95


>gi|118466082|ref|YP_883461.1| ABC transporter ATP-binding protein [Mycobacterium avium 104]
 gi|118167369|gb|ABK68266.1| ABC transporter, ATP-binding protein [Mycobacterium avium 104]
Length=846

 Score =  124 bits (311),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 58/90 (65%), Positives = 72/90 (80%), Gaps = 0/90 (0%)

Query  26   VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT  85
            +VVG DLRADMR+ HPLI+RAHLLLR+D+G W+AIDN S +G FV+G+RV  V+I+DG  
Sbjct  1    MVVGRDLRADMRITHPLISRAHLLLRYDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGCA  60

Query  86   INIGKPTGPWITFEVGHHQGIIGRLSRTPS  115
            INIG P GP +TF+VG HQG+ GR  RT S
Sbjct  61   INIGNPDGPLLTFDVGRHQGMAGRPPRTES  90


>gi|254820267|ref|ZP_05225268.1| hypothetical protein MintA_10081 [Mycobacterium intracellulare 
ATCC 13950]
Length=116

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 58/90 (65%), Positives = 73/90 (82%), Gaps = 0/90 (0%)

Query  26   VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT  85
            +VVG DLRADMR+ HPLI+RAHLLLRFD+G W+AIDN S +G FV+G+RV  V+I+DG T
Sbjct  1    MVVGRDLRADMRITHPLISRAHLLLRFDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGQT  60

Query  86   INIGKPTGPWITFEVGHHQGIIGRLSRTPS  115
            +NIG P GP +TF+VG HQG+ GR  +T S
Sbjct  61   LNIGNPDGPLLTFDVGRHQGMAGRPPKTES  90


>gi|254776752|ref|ZP_05218268.1| hypothetical protein MaviaA2_19096 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=116

 Score =  122 bits (305),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 58/90 (65%), Positives = 72/90 (80%), Gaps = 0/90 (0%)

Query  26   VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT  85
            +VVG DLRADMR+ HPLI+RAHLLLR+D+G W+AIDN S +G FV+G+RV  V+I+DG  
Sbjct  1    MVVGRDLRADMRITHPLISRAHLLLRYDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGCA  60

Query  86   INIGKPTGPWITFEVGHHQGIIGRLSRTPS  115
            INIG P GP +TF+VG HQG+ GR  RT S
Sbjct  61   INIGNPDGPLLTFDVGRHQGMAGRPPRTES  90


>gi|41407429|ref|NP_960265.1| hypothetical protein MAP1331c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395781|gb|AAS03648.1| hypothetical protein MAP_1331c [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=866

 Score =  122 bits (305),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 87/122 (72%), Gaps = 1/122 (0%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            ++RP PP+LT+R D SQ+ FAAG +VVVG  ++AD+R+  P I+RAHL+LRF++G W+AI
Sbjct  2    VTRPAPPILTIRHDGSQRSFAAGHEVVVGRHVQADVRIPDPRISRAHLILRFEQGRWLAI  61

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGIIGRLSR-TPSSRPG  119
            DN S +G +++G R+  VDI+DG +I++G P GP +TF +G  QG  G   R  PS   G
Sbjct  62   DNGSLNGTYLNGYRMPVVDIHDGQSIHVGNPHGPRLTFALGPQQGHAGHPGRPRPSHDSG  121

Query  120  SP  121
             P
Sbjct  122  PP  123


>gi|296164507|ref|ZP_06847078.1| ABC superfamily ATP binding cassette transporter, ABC protein 
[Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900107|gb|EFG79542.1| ABC superfamily ATP binding cassette transporter, ABC protein 
[Mycobacterium parascrofulaceum ATCC BAA-614]
Length=850

 Score =  120 bits (302),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 59/121 (49%), Positives = 85/121 (71%), Gaps = 3/121 (2%)

Query  1    MSRPHPPVLTVRSDRSQQCFAAGRDVVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAI  60
            ++R  PP+LT+R D S + FAAG +VVVG D RAD+R+A P I+RAHL+LRFD+G W+AI
Sbjct  2    VTRAAPPILTIRHDGSHRSFAAGHEVVVGRDARADVRIADPRISRAHLILRFDQGRWLAI  61

Query  61   DNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVGHHQGII---GRLSRTPSSR  117
            DN S +G +++G R+  +D++DG +I++G P GP +TF VG   G     GR  ++P   
Sbjct  62   DNGSLNGTYLNGYRMPVIDVHDGQSIHVGNPQGPRLTFAVGPRLGYSDRPGRARQSPEVG  121

Query  118  P  118
            P
Sbjct  122  P  122


>gi|336459683|gb|EGO38617.1| ABC-type multidrug transport system, ATPase component [Mycobacterium 
avium subsp. paratuberculosis S397]
Length=792

 Score =  110 bits (274),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 50/80 (63%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  36   MRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPW  95
            MR+ HPLI+RAHLLLR+D+G W+AIDN S +G FV+G+RV  V+I+DG  INIG P GP 
Sbjct  1    MRITHPLISRAHLLLRYDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGCAINIGNPDGPL  60

Query  96   ITFEVGHHQGIIGRLSRTPS  115
            +TF+VG HQG+ GR  RT S
Sbjct  61   LTFDVGRHQGMAGRPPRTES  80


>gi|342861572|ref|ZP_08718219.1| ABC transporter ATP-binding protein [Mycobacterium colombiense 
CECT 3035]
 gi|342131061|gb|EGT84350.1| ABC transporter ATP-binding protein [Mycobacterium colombiense 
CECT 3035]
Length=841

 Score =  100 bits (248),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 46/74 (63%), Positives = 59/74 (80%), Gaps = 0/74 (0%)

Query  42   LIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLTINIGKPTGPWITFEVG  101
            +I+RAHLLLRFD+G W+AIDN S +G FV+G+RV  V+I+DG T+NIG P GP +TF+VG
Sbjct  1    MISRAHLLLRFDQGKWLAIDNGSLNGTFVNGRRVPVVEIHDGQTLNIGNPDGPLLTFDVG  60

Query  102  HHQGIIGRLSRTPS  115
             HQG+ GR  RT S
Sbjct  61   RHQGMAGRPPRTES  74


>gi|342860792|ref|ZP_08717442.1| ABC transporter ATP-binding protein [Mycobacterium colombiense 
CECT 3035]
 gi|342131816|gb|EGT85073.1| ABC transporter ATP-binding protein [Mycobacterium colombiense 
CECT 3035]
Length=887

 Score = 99.8 bits (247),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 50/97 (52%), Positives = 69/97 (72%), Gaps = 1/97 (1%)

Query  26   VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT  85
            +VVG D++AD+R+A P I+RAHL+LRFD+G W+AIDN S +G +++G R+  VDI+DG +
Sbjct  1    MVVGRDVQADVRIADPRISRAHLILRFDQGRWLAIDNGSLNGTYLNGYRMPVVDIHDGQS  60

Query  86   INIGKPTGPWITFEVGHHQGIIGRLSRT-PSSRPGSP  121
            I+IG P GP +TF +G  QG  G   R  PS   G P
Sbjct  61   IHIGNPQGPRLTFAIGPQQGHAGHPQRIRPSHDSGPP  97


>gi|254820993|ref|ZP_05225994.1| hypothetical protein MintA_13745 [Mycobacterium intracellulare 
ATCC 13950]
Length=839

 Score = 97.8 bits (242),  Expect = 5e-19, Method: Compositional matrix adjust.
 Identities = 48/97 (50%), Positives = 70/97 (73%), Gaps = 1/97 (1%)

Query  26   VVVGSDLRADMRVAHPLIARAHLLLRFDRGNWIAIDNDSQSGMFVDGQRVSEVDIYDGLT  85
            +VVG D +AD+++A P I+RAHL+LRFD+G W+AIDN S +G +++G R+  +DI+DG +
Sbjct  1    MVVGRDAQADVQIADPRISRAHLILRFDQGRWLAIDNGSLNGTYLNGYRMPVIDIHDGQS  60

Query  86   INIGKPTGPWITFEVGHHQGIIGRLSRT-PSSRPGSP  121
            I++G P GP +TF +G  QG   R +RT PS   G P
Sbjct  61   IHVGNPRGPHLTFAIGPRQGQATRPARTRPSHDSGPP  97



Lambda     K      H
   0.322    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127525862838


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40