BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv3365c Length=876 Score E Sequences producing significant alignments: (Bits) Value gi|15610501|ref|NP_217882.1| hypothetical protein Rv3365c [Mycob... 1731 0.0 gi|289571602|ref|ZP_06451829.1| conserved hypothetical protein [... 1730 0.0 gi|148824574|ref|YP_001289328.1| hypothetical protein TBFG_13401... 1730 0.0 gi|289747186|ref|ZP_06506564.1| conserved hypothetical protein [... 1727 0.0 gi|339296191|gb|AEJ48302.1| hypothetical protein CCDC5079_3113 [... 1566 0.0 gi|308232434|ref|ZP_07416043.2| hypothetical protein TMAG_03313 ... 1553 0.0 gi|240169063|ref|ZP_04747722.1| putative regultory protein [Myco... 1231 0.0 gi|289752082|ref|ZP_06511460.1| conserved hypothetical protein [... 1198 0.0 gi|183981187|ref|YP_001849478.1| putative regultory protein [Myc... 1101 0.0 gi|118618275|ref|YP_906607.1| putative regultory protein [Mycoba... 1097 0.0 gi|342861578|ref|ZP_08718225.1| hypothetical protein MCOL_21936 ... 1078 0.0 gi|41409570|ref|NP_962406.1| hypothetical protein MAP3472c [Myco... 1054 0.0 gi|296165859|ref|ZP_06848345.1| periplasmic sensor sensor histid... 905 0.0 gi|118465732|ref|YP_883467.1| hypothetical protein MAV_4331 [Myc... 901 0.0 gi|289444979|ref|ZP_06434723.1| conserved hypothetical protein [... 886 0.0 gi|333991840|ref|YP_004524454.1| regultory protein [Mycobacteriu... 876 0.0 gi|254776760|ref|ZP_05218276.1| hypothetical protein MaviaA2_191... 859 0.0 gi|254822694|ref|ZP_05227695.1| hypothetical protein MintA_22384... 840 0.0 gi|289759522|ref|ZP_06518900.1| conserved hypothetical protein [... 800 0.0 gi|108798160|ref|YP_638357.1| periplasmic sensor signal transduc... 776 0.0 gi|120402544|ref|YP_952373.1| integral membrane sensor signal tr... 739 0.0 gi|118470327|ref|YP_886014.1| periplasmic sensor signal transduc... 723 0.0 gi|315445818|ref|YP_004078697.1| signal transduction histidine k... 599 8e-169 gi|289759520|ref|ZP_06518898.1| conserved hypothetical protein [... 525 2e-146 gi|289752075|ref|ZP_06511453.1| signal transduction histidine ki... 504 3e-140 gi|54026939|ref|YP_121181.1| putative histidine kinase [Nocardia... 417 5e-114 gi|111020664|ref|YP_703636.1| hypothetical protein RHA1_ro03675 ... 372 2e-100 gi|229488551|ref|ZP_04382417.1| periplasmic sensor signal transd... 371 3e-100 gi|226362904|ref|YP_002780684.1| hypothetical protein ROP_34920 ... 367 4e-99 gi|226308031|ref|YP_002767991.1| hypothetical protein RER_45440 ... 366 1e-98 gi|226364836|ref|YP_002782618.1| hypothetical protein ROP_54260 ... 346 1e-92 gi|289759521|ref|ZP_06518899.1| conserved hypothetical protein [... 326 1e-86 gi|54022634|ref|YP_116876.1| putative histidine kinase [Nocardia... 302 2e-79 gi|84494306|ref|ZP_00993425.1| putative histidine kinase [Janiba... 298 3e-78 gi|54023642|ref|YP_117884.1| putative histidine kinase [Nocardia... 281 3e-73 gi|256374611|ref|YP_003098271.1| sensor with HAMP domain [Actino... 276 2e-71 gi|256379423|ref|YP_003103083.1| sensor with HAMP domain [Actino... 271 4e-70 gi|111024847|ref|YP_707267.1| sensor kinase [Rhodococcus jostii ... 267 8e-69 gi|337768358|emb|CCB77071.1| Membrane protein [Streptomyces catt... 266 1e-68 gi|296268958|ref|YP_003651590.1| histidine kinase [Thermobispora... 266 2e-68 gi|345009558|ref|YP_004811912.1| integral membrane sensor signal... 265 4e-68 gi|297559789|ref|YP_003678763.1| integral membrane sensor signal... 264 7e-68 gi|21223899|ref|NP_629678.1| membrane protein [Streptomyces coel... 263 8e-68 gi|302542260|ref|ZP_07294602.1| periplasmic sensor signal transd... 262 2e-67 gi|134097168|ref|YP_001102829.1| sensor signal transduction hist... 262 2e-67 gi|294631591|ref|ZP_06710151.1| periplasmic sensor signal transd... 262 2e-67 gi|333024217|ref|ZP_08452281.1| putative histidine kinase [Strep... 262 3e-67 gi|311898506|dbj|BAJ30914.1| putative two-component system senso... 261 3e-67 gi|300789294|ref|YP_003769585.1| two-component system histidine ... 261 4e-67 gi|296268954|ref|YP_003651586.1| ATP-binding region ATPase domai... 261 5e-67 >gi|15610501|ref|NP_217882.1| hypothetical protein Rv3365c [Mycobacterium tuberculosis H37Rv] gi|15842961|ref|NP_337998.1| hypothetical protein MT3474 [Mycobacterium tuberculosis CDC1551] gi|31794548|ref|NP_857041.1| hypothetical protein Mb3400c [Mycobacterium bovis AF2122/97] 26 more sequence titles Length=876 Score = 1731 bits (4484), Expect = 0.0, Method: Compositional matrix adjust. Identities = 875/876 (99%), Positives = 876/876 (100%), Gaps = 0/876 (0%) Query 1 VTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 +TMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV Sbjct 1 MTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 Query 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK Sbjct 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 Query 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID Sbjct 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 Query 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL Sbjct 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 Query 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT Sbjct 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 Query 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT Sbjct 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 Query 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF Sbjct 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 Query 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT 480 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT Sbjct 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT 480 Query 481 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS 540 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS Sbjct 481 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS 540 Query 541 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 600 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG Sbjct 541 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 600 Query 601 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA 660 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA Sbjct 601 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA 660 Query 661 ADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQP 720 ADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQP Sbjct 661 ADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQP 720 Query 721 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA 780 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA Sbjct 721 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA 780 Query 781 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA 840 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA Sbjct 781 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA 840 Query 841 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ 876 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ Sbjct 841 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ 876 >gi|289571602|ref|ZP_06451829.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289545356|gb|EFD49004.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length=876 Score = 1730 bits (4480), Expect = 0.0, Method: Compositional matrix adjust. Identities = 874/876 (99%), Positives = 875/876 (99%), Gaps = 0/876 (0%) Query 1 VTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 +TMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV Sbjct 1 MTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 Query 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK Sbjct 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 Query 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID Sbjct 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 Query 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL Sbjct 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 Query 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT Sbjct 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 Query 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT Sbjct 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 Query 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF Sbjct 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 Query 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT 480 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHL ARLRRNSANLLVLAGAQIT Sbjct 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLVARLRRNSANLLVLAGAQIT 480 Query 481 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS 540 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS Sbjct 481 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS 540 Query 541 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 600 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG Sbjct 541 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 600 Query 601 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA 660 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA Sbjct 601 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA 660 Query 661 ADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQP 720 ADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQP Sbjct 661 ADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQP 720 Query 721 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA 780 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA Sbjct 721 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA 780 Query 781 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA 840 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA Sbjct 781 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA 840 Query 841 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ 876 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ Sbjct 841 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ 876 >gi|148824574|ref|YP_001289328.1| hypothetical protein TBFG_13401 [Mycobacterium tuberculosis F11] gi|253800412|ref|YP_003033413.1| hypothetical protein TBMG_03416 [Mycobacterium tuberculosis KZN 1435] gi|254552467|ref|ZP_05142914.1| hypothetical protein Mtube_18785 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] 11 more sequence titles Length=876 Score = 1730 bits (4480), Expect = 0.0, Method: Compositional matrix adjust. Identities = 874/876 (99%), Positives = 875/876 (99%), Gaps = 0/876 (0%) Query 1 VTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 +TMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV Sbjct 1 MTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 Query 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK Sbjct 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 Query 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID Sbjct 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 Query 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL Sbjct 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 Query 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 FGMSAALGAGSPDTKNLQQQMVTRM IMSDPAVALVNNPELLHSIQITRDIAEQVITDTT Sbjct 241 FGMSAALGAGSPDTKNLQQQMVTRMTIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 Query 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT Sbjct 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 Query 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF Sbjct 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 Query 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT 480 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT Sbjct 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT 480 Query 481 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS 540 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS Sbjct 481 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS 540 Query 541 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 600 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG Sbjct 541 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 600 Query 601 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA 660 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA Sbjct 601 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA 660 Query 661 ADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQP 720 ADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQP Sbjct 661 ADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQP 720 Query 721 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA 780 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA Sbjct 721 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA 780 Query 781 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA 840 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA Sbjct 781 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA 840 Query 841 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ 876 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ Sbjct 841 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ 876 >gi|289747186|ref|ZP_06506564.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|294995867|ref|ZP_06801558.1| hypothetical protein Mtub2_15513 [Mycobacterium tuberculosis 210] gi|298526846|ref|ZP_07014255.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|289687714|gb|EFD55202.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|298496640|gb|EFI31934.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326905206|gb|EGE52139.1| hypothetical protein TBPG_03142 [Mycobacterium tuberculosis W-148] gi|339299794|gb|AEJ51904.1| hypothetical protein CCDC5180_3067 [Mycobacterium tuberculosis CCDC5180] Length=876 Score = 1727 bits (4473), Expect = 0.0, Method: Compositional matrix adjust. Identities = 873/876 (99%), Positives = 875/876 (99%), Gaps = 0/876 (0%) Query 1 VTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 +TMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV Sbjct 1 MTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 Query 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK Sbjct 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 Query 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID Sbjct 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 Query 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL Sbjct 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 Query 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT Sbjct 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 Query 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT Sbjct 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 Query 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF Sbjct 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 Query 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT 480 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT Sbjct 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT 480 Query 481 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS 540 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS Sbjct 481 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS 540 Query 541 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 600 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG Sbjct 541 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 600 Query 601 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA 660 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA Sbjct 601 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA 660 Query 661 ADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQP 720 ADPTDVPAAIGPLPPVTLLPRRTPGS GIADVPAQPM+QRRRELKTPWWEDRFQQEPKQP Sbjct 661 ADPTDVPAAIGPLPPVTLLPRRTPGSRGIADVPAQPMRQRRRELKTPWWEDRFQQEPKQP 720 Query 721 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA 780 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA Sbjct 721 PAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAA 780 Query 781 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA 840 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA Sbjct 781 AEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAA 840 Query 841 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ 876 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ Sbjct 841 AVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ 876 >gi|339296191|gb|AEJ48302.1| hypothetical protein CCDC5079_3113 [Mycobacterium tuberculosis CCDC5079] Length=792 Score = 1566 bits (4056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 790/792 (99%), Positives = 791/792 (99%), Gaps = 0/792 (0%) Query 85 MIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLL 144 MIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLL Sbjct 1 MIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLL 60 Query 145 NGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGAR 204 NGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGAR Sbjct 61 NGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGAR 120 Query 205 GQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTR 264 GQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTR Sbjct 121 GQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTR 180 Query 265 MAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVL 324 MAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVL Sbjct 181 MAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVL 240 Query 325 VLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYT 384 VLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYT Sbjct 241 VLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYT 300 Query 385 TEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERN 444 TEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERN Sbjct 301 TEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERN 360 Query 445 EEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYR 504 EEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYR Sbjct 361 EEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYR 420 Query 505 RVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDS 564 RVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDS Sbjct 421 RVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDS 480 Query 565 GLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGT 624 GLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGT Sbjct 481 GLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGT 540 Query 625 TAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPPVTLLPRRTP 684 TAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPPVTLLPRRTP Sbjct 541 TAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPPVTLLPRRTP 600 Query 685 GSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPAPPAGPVDDD 744 GS GIADVPAQPM+QRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPAPPAGPVDDD Sbjct 601 GSRGIADVPAQPMRQRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPAPPAGPVDDD 660 Query 745 VIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGAR 804 VIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGAR Sbjct 661 VIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGAR 720 Query 805 LVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRS 864 LVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRS Sbjct 721 LVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRS 780 Query 865 HARESSQGPNQQ 876 HARESSQGPNQQ Sbjct 781 HARESSQGPNQQ 792 >gi|308232434|ref|ZP_07416043.2| hypothetical protein TMAG_03313 [Mycobacterium tuberculosis SUMu001] gi|308370239|ref|ZP_07420768.2| hypothetical protein TMBG_03835 [Mycobacterium tuberculosis SUMu002] gi|308371319|ref|ZP_07424572.2| hypothetical protein TMCG_02515 [Mycobacterium tuberculosis SUMu003] 17 more sequence titles Length=784 Score = 1553 bits (4021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 784/784 (100%), Positives = 784/784 (100%), Gaps = 0/784 (0%) Query 93 MSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQALLD 152 MSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQALLD Sbjct 1 MSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQALLD 60 Query 153 KVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEI 212 KVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEI Sbjct 61 KVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEI 120 Query 213 LVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSDPA 272 LVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSDPA Sbjct 121 LVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSDPA 180 Query 273 VALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATA 332 VALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATA Sbjct 181 VALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATA 240 Query 333 IVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVA 392 IVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVA Sbjct 241 IVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVA 300 Query 393 HAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLD 452 HAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLD Sbjct 301 HAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLD 360 Query 453 SLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVP 512 SLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVP Sbjct 361 SLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVP 420 Query 513 DCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDAD 572 DCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDAD Sbjct 421 DCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDAD 480 Query 573 RRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPL 632 RRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPL Sbjct 481 RRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPL 540 Query 633 AVLEGTAPAQPPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPPVTLLPRRTPGSSGIADV 692 AVLEGTAPAQPPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPPVTLLPRRTPGSSGIADV Sbjct 541 AVLEGTAPAQPPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPPVTLLPRRTPGSSGIADV 600 Query 693 PAQPMQQRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLS 752 PAQPMQQRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLS Sbjct 601 PAQPMQQRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLS 660 Query 753 EMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAAVP 812 EMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAAVP Sbjct 661 EMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAAVP 720 Query 813 EGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHARESSQG 872 EGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHARESSQG Sbjct 721 EGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHARESSQG 780 Query 873 PNQQ 876 PNQQ Sbjct 781 PNQQ 784 >gi|240169063|ref|ZP_04747722.1| putative regultory protein [Mycobacterium kansasii ATCC 12478] Length=908 Score = 1231 bits (3185), Expect = 0.0, Method: Compositional matrix adjust. Identities = 663/924 (72%), Positives = 736/924 (80%), Gaps = 70/924 (7%) Query 1 VTMFARPTIPVAAAASDI-SAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAM 59 VTMFARPT PVAA ++ A +PAR RP +WS NWPV WKV IA++PL++A Sbjct 7 VTMFARPTTPVAAVPPEVRGAQRRPAR----HRPAAWSLSNWPVGWKVVAIAVVPLLLAT 62 Query 60 VLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTAR 119 V LR++AAMA++ LRLVAARA +IPAITKYMSALDVA+LASSTG DVEGA+KNFTAR Sbjct 63 VFGVLRIDAAMANSGNLRLVAARANVIPAITKYMSALDVALLASSTGRDVEGAKKNFTAR 122 Query 120 KYELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVI 179 KYELQTRLADTDVI DVRSGVNTLLNGGQALLDKVL +SIGLRDR+T YAPLLLTA++ I Sbjct 123 KYELQTRLADTDVIPDVRSGVNTLLNGGQALLDKVLENSIGLRDRITTYAPLLLTAEDAI 182 Query 180 DASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPST 239 +ASVRVDSEQIR QVQGLSRAVGARGQMTMQEILVTRGADL EPQLR++M+TLAGTEPST Sbjct 183 NASVRVDSEQIRAQVQGLSRAVGARGQMTMQEILVTRGADLPEPQLRTSMITLAGTEPST 242 Query 240 LFGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDT 299 LFGMS LG GSPD KNLQQQ++TRMAIMSDPA LV+NPELL SI++T IAEQVI Sbjct 243 LFGMSEVLGVGSPDAKNLQQQLLTRMAIMSDPASELVDNPELLRSIKVTDGIAEQVIKGA 302 Query 300 TEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAH 359 T +VT SVQ+QAT RRDAA+RDAVLVLAAIA A+VVVL+VAR LV P+RVLRDGALKVAH Sbjct 303 TASVTNSVQAQATARRDAAVRDAVLVLAAIAIALVVVLLVARALVRPLRVLRDGALKVAH 362 Query 360 TDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEM 419 TDL+GEIA VRAG EP P+PLAVYTTEEIGQVAHAVDELHT+ALLLAG+E RLRLLVN+M Sbjct 363 TDLEGEIARVRAGAEPQPQPLAVYTTEEIGQVAHAVDELHTQALLLAGDEARLRLLVNDM 422 Query 420 FETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQI 479 FETMSRRSRSLVDQQLS+ID+LERNE+DP RLDSLFRLDHLAARLRRNSANLLVLAGA+I Sbjct 423 FETMSRRSRSLVDQQLSLIDRLERNEQDPDRLDSLFRLDHLAARLRRNSANLLVLAGAEI 482 Query 480 TRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYS 539 +R+ REPVPL TV+SAAVSEVEDYRRV + V DC V+G AAG VIHLLAELIDNAL YS Sbjct 483 SRERREPVPLPTVVSAAVSEVEDYRRVAVGGVADCKVIGGAAGSVIHLLAELIDNALSYS 542 Query 540 SPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVV 599 PTT VRV+A GS G VLLR++D GLGMTD+DRR+ANMRL++GGEVTPD+ARHMGLFVV Sbjct 543 PPTTTVRVSAVRGSAGGVLLRVADCGLGMTDSDRRIANMRLQSGGEVTPDNARHMGLFVV 602 Query 600 GRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEG------TAPAQPPKPRVFAIKP 653 GRLA RHGIRVGLRGP TGE G GTTAEVYLP+AVL G A A P PR F IKP Sbjct 603 GRLAARHGIRVGLRGPSTGEAGNGTTAEVYLPVAVLAGGESPASQAGAPAPTPRPFIIKP 662 Query 654 PCPEPAAADPTDVPA----AIGPLPPVTLLPRRTPGSSGIADVPAQPMQQR---RRELKT 706 P PEP AADP + A P+PPVTLLPRR PGSSGI D+PA P Q+ RRELKT Sbjct 663 PTPEP-AADPAATSSYQNGADKPVPPVTLLPRRKPGSSGITDIPAPPAGQQPRARRELKT 721 Query 707 PWWEDRF------QQEPKQPPAPEPRPAPPPAKPAP------------------------ 736 PWWE R Q++ +Q PA PP K A Sbjct 722 PWWETRHDARHDAQRDAQQTPAQT-----PPTKQATASDTSAFFAQRSTAAAARPADPPP 776 Query 737 ----PAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRT 792 PAGPVDDDVIY+RMLSEM+GDP ELA SPDLDW+SVWD GWSAAA+A DKPV+SRT Sbjct 777 KPSVPAGPVDDDVIYQRMLSEMMGDPRELAASPDLDWRSVWDRGWSAAAQAQDKPVESRT 836 Query 793 DYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASI 852 D+GLPVR PGARLVPGAA PE PG G HP R P AAAVRDPDAVRASI Sbjct 837 DHGLPVRTPGARLVPGAAEPE------PGV------GPHPDRQPPAAAAVRDPDAVRASI 884 Query 853 SSHFGGVRTGRSHARESSQGPNQQ 876 SHFGGV TGR+HAR +SQ +QQ Sbjct 885 GSHFGGVHTGRAHARTTSQEADQQ 908 >gi|289752082|ref|ZP_06511460.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289692669|gb|EFD60098.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=676 Score = 1198 bits (3100), Expect = 0.0, Method: Compositional matrix adjust. Identities = 613/613 (100%), Positives = 613/613 (100%), Gaps = 0/613 (0%) Query 1 VTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 VTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV Sbjct 64 VTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 123 Query 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK Sbjct 124 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 183 Query 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID Sbjct 184 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 243 Query 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL Sbjct 244 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 303 Query 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT Sbjct 304 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 363 Query 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT Sbjct 364 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 423 Query 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF Sbjct 424 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 483 Query 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT 480 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT Sbjct 484 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQIT 543 Query 481 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS 540 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS Sbjct 544 RDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSS 603 Query 541 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 600 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG Sbjct 604 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 663 Query 601 RLAGRHGIRVGLR 613 RLAGRHGIRVGLR Sbjct 664 RLAGRHGIRVGLR 676 >gi|183981187|ref|YP_001849478.1| putative regultory protein [Mycobacterium marinum M] gi|183174513|gb|ACC39623.1| conserved hypothetical regultory protein [Mycobacterium marinum M] Length=911 Score = 1101 bits (2848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 630/914 (69%), Positives = 718/914 (79%), Gaps = 41/914 (4%) Query 1 VTMFARPTIPVAAAASDISAP-AQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAM 59 +TMFARPT PV AA AP A A P +RPP+WS NWPV WKV IA++PL++AM Sbjct 1 MTMFARPTTPVEAAPG---APVASGAESAPPKRPPAWSLGNWPVGWKVVAIAVVPLLLAM 57 Query 60 VLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTAR 119 VL GLR+ MA++SGLRL ARA++IPAITKYMSALDVA+LASSTG DVEG +KNF AR Sbjct 58 VLGGLRIHGGMANSSGLRLADARADVIPAITKYMSALDVALLASSTGRDVEGPKKNFAAR 117 Query 120 KYELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVI 179 K ELQTRLA+T+V++DVRSGVN++LNGGQALLD+ LA++I LRDRVTAY PLLLTA++ I Sbjct 118 KNELQTRLANTNVLSDVRSGVNSVLNGGQALLDQTLANTISLRDRVTAYVPLLLTAEDAI 177 Query 180 DASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPST 239 +ASVRVD+EQIR +VQGLSRAVGARGQMT+QEILVTRGA+ E QLR++M+TLAGTEPST Sbjct 178 NASVRVDNEQIRAEVQGLSRAVGARGQMTLQEILVTRGAEAPEAQLRNSMITLAGTEPST 237 Query 240 LFGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDT 299 LFGM+ LG GSPD K L QQMVTRMAI+SDP L NP+LL SIQITR IAEQVI D Sbjct 238 LFGMTEVLGVGSPDAKTLHQQMVTRMAIISDPDSVLAGNPQLLQSIQITRGIAEQVINDA 297 Query 300 TEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAH 359 TE+VTK+VQ++A+ RRDAAIRD V VL AI A+VVVL+VAR LV P+R LRDGALKVAH Sbjct 298 TESVTKAVQARASARRDAAIRDTVFVLGAILVAVVVVLLVARALVRPLRQLRDGALKVAH 357 Query 360 TDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEM 419 TDL+GEIA VRAG EPIPEPL VYTTEEIGQVAHAVDELH + L+LAG+E RLR LVN+M Sbjct 358 TDLEGEIAKVRAGAEPIPEPLPVYTTEEIGQVAHAVDELHAQVLVLAGDEARLRSLVNDM 417 Query 420 FETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQI 479 FETMSRRSRSLVDQQLS+ID LERNEEDP RLD+LFRLDHLAARLRRNSANLLVLAGAQI Sbjct 418 FETMSRRSRSLVDQQLSLIDGLERNEEDPERLDTLFRLDHLAARLRRNSANLLVLAGAQI 477 Query 480 TRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYS 539 +RDHREPVPL TVISAAVSEVEDYRRV+ V DC V+GAAAG VIHLLAELIDNAL YS Sbjct 478 SRDHREPVPLLTVISAAVSEVEDYRRVETGGVADCTVIGAAAGAVIHLLAELIDNALNYS 537 Query 540 SPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVV 599 PT PVRV+A GSEG VLLRI+DSGLGMT++DRRMANMRL AG EVTP +ARHMGLFVV Sbjct 538 PPTAPVRVSAVRGSEGGVLLRIADSGLGMTESDRRMANMRLHAGVEVTPANARHMGLFVV 597 Query 600 GRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVL-----EGTAPAQPPKPRVFAIK-- 652 GRLA RHGIRVGLRGP TGE G GTTAEVYLP VL G A QPP+ R ++ Sbjct 598 GRLAARHGIRVGLRGPSTGEAGGGTTAEVYLPRTVLVDGQRPGPAAGQPPQRRAVVVRPP 657 Query 653 ----PPCPEPAAADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPA-----QPMQQRRRE 703 P P+ A + PT A+ PLPPV+LLPRR PGSSGIADVP Q +RRRE Sbjct 658 SSEPAPAPDAAGSAPTGDSTAVPPLPPVSLLPRRNPGSSGIADVPGQQPEQQQPPRRRRE 717 Query 704 LKTPWWEDR------FQQEPKQ----------PPAP-----EPRPAPPPAKPAPPAGPVD 742 LKTPWWE Q P+Q PA EP P+ P P+ A P Sbjct 718 LKTPWWETAQPAGQPEQAAPQQSDTAAFFARRSPAAGAGPDEPAPSVKPGPPSALADPAR 777 Query 743 DDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPG 802 DD IY++MLSEM DPHELA+S DLDW+SVWD GWSAAAEA D PVQSRTD+GLPVR PG Sbjct 778 DDSIYQKMLSEMTSDPHELANSADLDWRSVWDRGWSAAAEAQDTPVQSRTDHGLPVRTPG 837 Query 803 ARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTG 862 ARLVPGAA + P+++ AS+ GL P + +H AA+RDP+AVRAS+SSHFGGV TG Sbjct 838 ARLVPGAADSDEPNQDEADRPPASDRGLPPDQPAQHTAAMRDPNAVRASMSSHFGGVHTG 897 Query 863 RSHARESSQGPNQQ 876 R+HA +SQ P+QQ Sbjct 898 RAHAHRASQEPDQQ 911 >gi|118618275|ref|YP_906607.1| putative regultory protein [Mycobacterium ulcerans Agy99] gi|118570385|gb|ABL05136.1| conserved hypothetical regultory protein [Mycobacterium ulcerans Agy99] Length=911 Score = 1097 bits (2838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 627/914 (69%), Positives = 717/914 (79%), Gaps = 41/914 (4%) Query 1 VTMFARPTIPVAAAASDISAP-AQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAM 59 +TMFAR T PV AA AP A A P +RPP+WS NWPV WKV IA++PL++AM Sbjct 1 MTMFARLTTPVEAAPG---APVASGAESAPPKRPPAWSLGNWPVGWKVVAIAVVPLLLAM 57 Query 60 VLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTAR 119 VL GLR+ MA++SGLRL ARA++IPAITKYMSALDVA+LASSTG DVEG +KNF AR Sbjct 58 VLGGLRIHGGMANSSGLRLADARADVIPAITKYMSALDVALLASSTGRDVEGPKKNFAAR 117 Query 120 KYELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVI 179 K ELQTRLA+T+V++DVRSGVN++LNGGQALLD+ LA++ LRDRVTAY PLLLTA++ I Sbjct 118 KNELQTRLANTNVLSDVRSGVNSVLNGGQALLDQTLANTSSLRDRVTAYVPLLLTAEDAI 177 Query 180 DASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPST 239 +ASVRVD+EQIR +VQGLSRAVGARGQMT+QEILVTRG + E QLR++M+TLAGT PST Sbjct 178 NASVRVDNEQIRAEVQGLSRAVGARGQMTLQEILVTRGVEAPEAQLRNSMITLAGTGPST 237 Query 240 LFGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDT 299 LFGM+ LG GSPD K L QQMVTRMAI+SDP L NP+LL SIQITR IAEQVI D Sbjct 238 LFGMTEVLGVGSPDAKTLHQQMVTRMAIISDPDSVLAGNPQLLQSIQITRGIAEQVINDA 297 Query 300 TEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAH 359 TE+VTK+VQ++A+ RRDAAIRD VLVL AI A+VVVL+VAR LV P+R LRDGALKVAH Sbjct 298 TESVTKAVQARASARRDAAIRDTVLVLGAILVAVVVVLLVARALVRPLRQLRDGALKVAH 357 Query 360 TDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEM 419 TDL+GEIA VR G EPIPEPL VYTTEEIGQVAHAVDELH + L+LAG+E RLR LVN+M Sbjct 358 TDLEGEIAKVREGAEPIPEPLPVYTTEEIGQVAHAVDELHAQVLVLAGDEARLRSLVNDM 417 Query 420 FETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQI 479 FETMSRRSRSLVDQQLS+ID LERNEEDP RLD+LFRLDHLAARLRRNSANLLVLAGAQI Sbjct 418 FETMSRRSRSLVDQQLSLIDGLERNEEDPDRLDTLFRLDHLAARLRRNSANLLVLAGAQI 477 Query 480 TRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYS 539 +RDHREPVPL TVISAAVSEVEDYRRV+ V DC V+GAAAG VIHLLAELIDNAL YS Sbjct 478 SRDHREPVPLLTVISAAVSEVEDYRRVETGGVADCTVIGAAAGAVIHLLAELIDNALNYS 537 Query 540 SPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVV 599 PT PVRV+A GSEG VLLRI+DSGLGMT++DRRMANMRL +GGEVTP +ARHMGLFVV Sbjct 538 PPTAPVRVSAVRGSEGGVLLRIADSGLGMTESDRRMANMRLHSGGEVTPANARHMGLFVV 597 Query 600 GRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVL-----EGTAPAQPPKPRVFAIK-- 652 GRLA RHGIRVGLRGP TGE G GTTAEVYLP VL G+A QPP+ F ++ Sbjct 598 GRLAARHGIRVGLRGPSTGEAGGGTTAEVYLPRTVLVDGQRPGSAAGQPPQRSAFVVRPP 657 Query 653 ----PPCPEPAAADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPA-----QPMQQRRRE 703 P P+ A + PT A+ PLPPV+LLPRR PGSSGIADVP Q +RRRE Sbjct 658 SSEPAPAPDAAGSAPTGDSTAVPPLPPVSLLPRRNPGSSGIADVPGQQPEQQQPPRRRRE 717 Query 704 LKTPWWEDR------FQQEPKQ----------PPAP-----EPRPAPPPAKPAPPAGPVD 742 LKTPWWE Q P+Q PA EP P+ P P+ PA PV Sbjct 718 LKTPWWETAQPAGRPEQAAPQQSDTAAFFARRSPAAGAGPDEPAPSVKPGPPSVPADPVR 777 Query 743 DDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPG 802 DD IY++MLSEM DPHELA+S DLDW+SVWD GWSAAAEA + PVQSRTD+GLPVR PG Sbjct 778 DDSIYQKMLSEMTSDPHELANSADLDWRSVWDRGWSAAAEAQETPVQSRTDHGLPVRTPG 837 Query 803 ARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTG 862 ARLVPGAA + P ++ AS+ GL P + +H AA+RDP+AVRAS+SSHFGGV TG Sbjct 838 ARLVPGAADSDEPTQDEADRPPASDRGLPPDQPAQHTAAMRDPNAVRASMSSHFGGVHTG 897 Query 863 RSHARESSQGPNQQ 876 R+HA +SQ P+QQ Sbjct 898 RAHAHRASQEPDQQ 911 >gi|342861578|ref|ZP_08718225.1| hypothetical protein MCOL_21936 [Mycobacterium colombiense CECT 3035] gi|342131067|gb|EGT84356.1| hypothetical protein MCOL_21936 [Mycobacterium colombiense CECT 3035] Length=933 Score = 1078 bits (2788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 595/938 (64%), Positives = 705/938 (76%), Gaps = 70/938 (7%) Query 3 MFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLA 62 MF RPT PV A + +AP A P +RPP+WS NWPVRWKV I L+PLV+A V Sbjct 1 MFTRPTNPVEADVVE-TAPKPGAGAAPTKRPPTWSLSNWPVRWKVLAIVLVPLVLATVFG 59 Query 63 GLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARKYE 122 LR+ AMA+ +GLRL A RA+++P ITKYMSALDVA+LASSTG DV+GA+KN+ ARK E Sbjct 60 VLRIHGAMANAAGLRLAATRADVVPVITKYMSALDVALLASSTGRDVDGAKKNYEARKGE 119 Query 123 LQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDAS 182 LQ RL DTDV DVRSGVN LL+GGQ L+ K ++GLR+RVT YAP+LLTA++VI+AS Sbjct 120 LQARLDDTDVSDDVRSGVNNLLDGGQMLVSKAADPALGLRERVTLYAPILLTAEDVINAS 179 Query 183 VRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFG 242 VRVD E+IR Q QGLSRAVGARGQMTMQ+ILVTRGADL EPQLR++M TLAGTEPSTLFG Sbjct 180 VRVDDEKIRAQAQGLSRAVGARGQMTMQKILVTRGADLPEPQLRTSMATLAGTEPSTLFG 239 Query 243 MSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEA 302 MS LGAGSP+ K LQQQMV+RMAIMSDPA LV+NP+LL SIQ T DIA+QVI +TT + Sbjct 240 MSEVLGAGSPEAKTLQQQMVSRMAIMSDPASVLVDNPDLLRSIQTTDDIADQVIKNTTGS 299 Query 303 VTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDL 362 VT++V ++A +RR AAI D VLVL AI A+ VVL+VAR LV P+R+LRDGALKVAHTDL Sbjct 300 VTRTVHARAAERRSAAILDMVLVLGAIVIALAVVLLVARALVRPLRILRDGALKVAHTDL 359 Query 363 DGEIAAVRAGD-EPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFE 421 + E+A V+AG EPIP PL VYTTEEIGQVAHAVDELHT+ALLLAG+E RLRLLVN+MFE Sbjct 360 EEEVALVKAGGAEPIPTPLPVYTTEEIGQVAHAVDELHTQALLLAGDEARLRLLVNDMFE 419 Query 422 TMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITR 481 TMSRRSR+LVDQQL++ID+LERNE+DP RLDSLFRLDHLAARLRRNSANLLVLAGAQ+ R Sbjct 420 TMSRRSRTLVDQQLALIDRLERNEDDPERLDSLFRLDHLAARLRRNSANLLVLAGAQLAR 479 Query 482 DHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSP 541 D R+PVPL+TVI+AAVSEVEDYRRV++A +P+C ++G+AAGG IHL AELIDNALRYS P Sbjct 480 DQRDPVPLATVINAAVSEVEDYRRVELAGLPECELIGSAAGGAIHLFAELIDNALRYSPP 539 Query 542 TTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGR 601 TT R++A+ G +G V++RI+D+GLGM D DRRMANMRL+AGG+VTPD+ARHMGLFVVGR Sbjct 540 TTSARISASRGGDGGVVVRIADAGLGMNDTDRRMANMRLQAGGDVTPDNARHMGLFVVGR 599 Query 602 LAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPR-VFAIKPPCPEPAA 660 +A HGIRVGLRGP E G+GTTAE+YLP VL G A A P PR + A+ P + A+ Sbjct 600 IASLHGIRVGLRGPAANESGSGTTAEIYLPPTVLAGRAVADSPAPRHIRAVSSPSAKLAS 659 Query 661 A-----------DPTDVPA-AIGPLPPVTLLPRRTPGSSGIADVPAQPM-------QQRR 701 A D T PA A G P VTLLPRR PGSSGI +VPA P +++R Sbjct 660 ATAAPAEDAGRDDGTLEPADATG--PSVTLLPRRNPGSSGITEVPAVPAPAAEEQPRRQR 717 Query 702 RELKTPWWED------------------------------------RFQQEPKQPPAPEP 725 REL TPWWE+ R ++ + + + Sbjct 718 RELATPWWENAAAPARAPEPKPAPEPEPAPAQPARAASDTSAFFSARAREADSRTQSRQD 777 Query 726 RPAP---PPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAE 782 RPAP P P PAGP DDDVIYRRMLSEM+GDPH+L +SPDLDW+SVWD GW+ AA Sbjct 778 RPAPVASIPPAPKAPAGPADDDVIYRRMLSEMLGDPHDLVNSPDLDWQSVWDRGWTLAAA 837 Query 783 AADKPVQSR-TDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPG-RAPRHAA 840 A DKPV+ TD+GLPVR PGARLVPG A G +R+ P G P R P+HAA Sbjct 838 AEDKPVEEHTTDHGLPVRTPGARLVPGGA--NGGERDEPAEPDQGLNGRSPSHREPQHAA 895 Query 841 A---VRDPDAVRASISSHFGGVRTGRSHARESSQGPNQ 875 A RDP+AVRAS S+HFGGVRTGRSHARE+ QG ++ Sbjct 896 AGPLARDPEAVRASFSNHFGGVRTGRSHARETDQGSDE 933 >gi|41409570|ref|NP_962406.1| hypothetical protein MAP3472c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398401|gb|AAS06022.1| hypothetical protein MAP_3472c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459774|gb|EGO38689.1| signal transduction histidine kinase [Mycobacterium avium subsp. paratuberculosis S397] Length=944 Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/937 (64%), Positives = 686/937 (74%), Gaps = 106/937 (11%) Query 29 PQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPA 88 P +RPP+WS NWPVRWKV I L+PL++A V LR+ AMA+ +GLRL AARA+++PA Sbjct 25 PAKRPPAWSLSNWPVRWKVLAIVLVPLMLATVFGVLRIHGAMANAAGLRLAAARADVVPA 84 Query 89 ITKYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQ 148 ITKYMSALDVA+LA S G D EGA+KN+ ARK ELQTRL DTDV DVR+GVN LL+ GQ Sbjct 85 ITKYMSALDVALLAGSAGRDAEGAKKNYEARKNELQTRLGDTDVTDDVRAGVNNLLDAGQ 144 Query 149 ALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMT 208 L++KV S+GLR+RVT YAP+LLTA+NVI+ASVRVD E+IR Q QGLSRAVGARGQMT Sbjct 145 MLVNKVAEGSLGLRERVTFYAPILLTAENVINASVRVDDERIRAQAQGLSRAVGARGQMT 204 Query 209 MQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIM 268 MQ+ILVTRGA+L EPQLR++M TLAGTEPSTLFGMS LGAGSP+ K LQQQMV+RMAIM Sbjct 205 MQKILVTRGAELPEPQLRTSMATLAGTEPSTLFGMSEVLGAGSPEAKTLQQQMVSRMAIM 264 Query 269 SDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAA 328 SDPA LV+NP+LL SIQ T DIA+QVI +TT +VTKSV +QA +RR++AI D LVLAA Sbjct 265 SDPASVLVDNPDLLRSIQTTDDIADQVIKNTTASVTKSVHAQAAERRNSAILDTALVLAA 324 Query 329 IATAIVVVLV--VARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGD-EPIPEPLAVYTT 385 I A+ VVL+ R LV P+R LRDGALKVAHTDL+ EIA V+AG EPIP PL VYTT Sbjct 325 IVIALAVVLLVA--RALVRPLRTLRDGALKVAHTDLEEEIAHVKAGGAEPIPAPLPVYTT 382 Query 386 EEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNE 445 EEIGQVAHAVDELHT+ALLLAG+E RLRLLVN+MFETMSRRSRSLVDQQL++ID+LERNE Sbjct 383 EEIGQVAHAVDELHTQALLLAGDEARLRLLVNDMFETMSRRSRSLVDQQLALIDRLERNE 442 Query 446 EDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRR 505 ++P RLD+LFRLDHLAARLRRNSANLLVLAGA++ RD R+PVPL+TVI+AAVSEVEDYRR Sbjct 443 DNPERLDNLFRLDHLAARLRRNSANLLVLAGAKLARDQRDPVPLATVINAAVSEVEDYRR 502 Query 506 VDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSG 565 V+IA +P+C+++GAAAGG IHL AELIDNALRYS PTT RV+A+ G +G V++RI+DSG Sbjct 503 VEIAGLPECSLLGAAAGGAIHLFAELIDNALRYSPPTTSARVSASRGGDGGVVVRIADSG 562 Query 566 LGMTDADRRMANMRLRAGGEVTPD----SARHMGLFVVGRLAGRHGIRVGLRGPVTGEQG 621 LGM DADRR+ANMRL+AGG+ PD +ARH+GLFVVGR+A HG+RVGLRGP E G Sbjct 563 LGMNDADRRIANMRLQAGGDANPDPHPENARHLGLFVVGRIAAWHGMRVGLRGPAANESG 622 Query 622 TGTTAEVYLPLAVLEGTAPAQPPKPRVF------------AIKPPCPEPAAADPTDVPAA 669 +GTTAEVYLP VL G A+P PR AI P E D T PAA Sbjct 623 SGTTAEVYLPPTVLAGRVVAEPSGPRHIRAVSSPSAKLASAIAAPAEEGGRHDGTQQPAA 682 Query 670 IG-------PLPPVTLLPRRTPGSSGI-------ADVPAQPMQQRRRELKTPWWEDRFQQ 715 G PPVTLLPRR PGSSGI A +++RREL TPWWE Sbjct 683 RGTRNAGDASTPPVTLLPRRNPGSSGIADVAAVPAPPAEPQPRRQRRELATPWWE----- 737 Query 716 EPKQPPAPEPRPAPP---------------PAKPA------------------------- 735 +P PRPAP PA+ A Sbjct 738 -----ASPAPRPAPERAPEPAPEPQQPAPRPARAASDTSAFFAARPRTETPPEAPPKPPP 792 Query 736 ----------PPA---GPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAE 782 PPA GP DDDVIYRRMLSEM+GDPH+L +SPDLDW+SVWD GW+ AA Sbjct 793 KPKPKPEASIPPAASTGPADDDVIYRRMLSEMLGDPHDLVNSPDLDWQSVWDRGWTLAAA 852 Query 783 AADKPVQSR-TDYGLPVREPGARLVPGAA--VPEGPDREHPGAALASNGGLHPGRAPRHA 839 A DKPV+S TD+GLPVR PGARLVPG A PD E PG NG R P+HA Sbjct 853 AEDKPVESHTTDHGLPVRTPGARLVPGGAHGAAAEPDDE-PGL----NGRSPAPRRPQHA 907 Query 840 AAVRDPDAVRASISSHFGGVRTGRSHARESSQGPNQQ 876 A RDP+AVRAS SSHFGGVRTGRSHARESS+GP+QQ Sbjct 908 AVTRDPEAVRASFSSHFGGVRTGRSHARESSEGPDQQ 944 >gi|296165859|ref|ZP_06848345.1| periplasmic sensor sensor histidine kinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898786|gb|EFG78306.1| periplasmic sensor sensor histidine kinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=664 Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/669 (73%), Positives = 561/669 (84%), Gaps = 11/669 (1%) Query 3 MFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLA 62 MFARP AAA S A PA GK RPP+WS NWPVRWKV I L+PLV+A V Sbjct 1 MFARPA--EAAAESPQPRDAGPAPGK---RPPTWSLSNWPVRWKVLAIVLVPLVLATVFG 55 Query 63 GLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARKYE 122 LR+E AMA++ GLRL A RA+++P ITKYMSALDVA+LA STG DVEGA+KNF ARK+E Sbjct 56 ALRIEGAMANSGGLRLAATRADVVPVITKYMSALDVALLAGSTGRDVEGAKKNFEARKHE 115 Query 123 LQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDAS 182 L+TRL DTDV +VRSGV TLL+GGQ L++KV + +GLR+RVT YAP+LLTA++VI+AS Sbjct 116 LETRLNDTDVTPEVRSGVGTLLDGGQLLVNKVSDNGLGLRERVTLYAPILLTAEDVINAS 175 Query 183 VRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFG 242 VRVD E+IR Q GLSRAVGARGQMTMQ+ILVTRGADL EPQLR++M+TLAGTEPSTLFG Sbjct 176 VRVDDEKIRAQTAGLSRAVGARGQMTMQKILVTRGADLPEPQLRTSMITLAGTEPSTLFG 235 Query 243 MSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEA 302 MS LGAGSP+ K LQQQ+VTRMAIMSDPA ALV+NP+LL SIQ T DIAEQVITD T + Sbjct 236 MSEVLGAGSPEAKTLQQQLVTRMAIMSDPASALVDNPDLLRSIQATDDIAEQVITDATAS 295 Query 303 VTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDL 362 VTKSV +QA D+RDAAI D V+VL+AI A+V+VL+VAR LV P+RVLRDGALKVAHTDL Sbjct 296 VTKSVHAQAADKRDAAIIDTVVVLSAIVVALVIVLLVARALVRPLRVLRDGALKVAHTDL 355 Query 363 DGEIAAVRAGD-EPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFE 421 + EIA V+AG EP P+PL VYTTEEIGQVAHAVDELHT+ALLLAG+E RLRLLVN+MFE Sbjct 356 EEEIARVKAGGAEPTPQPLPVYTTEEIGQVAHAVDELHTQALLLAGDEARLRLLVNDMFE 415 Query 422 TMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITR 481 TMSRRSRSLVDQQLS+ID+LERNEEDP RLDSLFRLDHLAARLRRNSANLLVLAGAQ+ R Sbjct 416 TMSRRSRSLVDQQLSLIDRLERNEEDPERLDSLFRLDHLAARLRRNSANLLVLAGAQLAR 475 Query 482 DHREPVPLSTVISAAVSEVEDYRRVDIARVP-DCAVVGAAAGGVIHLLAELIDNALRYSS 540 D R+PVPLSTV++AAVSEVEDYRRV+IA +P + ++GAAAGG IHL AELIDNALRYS Sbjct 476 DQRDPVPLSTVLNAAVSEVEDYRRVEIAGLPENSTLIGAAAGGAIHLFAELIDNALRYSP 535 Query 541 PTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVG 600 P+TPVRV+AA G + V++RI+D+GLGM DADRR+ANMRL+AGGEV+PD+ARHMGLFVVG Sbjct 536 PSTPVRVSAARGGDAGVVVRIADAGLGMNDADRRIANMRLQAGGEVSPDNARHMGLFVVG 595 Query 601 RLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAA 660 R+A RHGIRVGLRGP E+G+GTTAE+YLP A+LEG QP R+ A+ P + AA Sbjct 596 RIAARHGIRVGLRGPAANEEGSGTTAEIYLPPAILEGA--GQPRAARIRAVSSPSAQLAA 653 Query 661 ADPTDVPAA 669 A T VP A Sbjct 654 A--TAVPPA 660 >gi|118465732|ref|YP_883467.1| hypothetical protein MAV_4331 [Mycobacterium avium 104] gi|118167019|gb|ABK67916.1| conserved hypothetical protein [Mycobacterium avium 104] Length=947 Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/713 (68%), Positives = 565/713 (80%), Gaps = 31/713 (4%) Query 29 PQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPA 88 P +RPP+WS NWPVRWKV I L+PL++A V LR+ AMA+ +GLRL AARA+++PA Sbjct 27 PAKRPPAWSLSNWPVRWKVLAIVLVPLMLATVFGVLRIHGAMANAAGLRLAAARADVVPA 86 Query 89 ITKYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQ 148 ITKYMSALDVA+LA S G D EGA+KN+ ARK ELQTRL DTDV DVR+GVN LL+ GQ Sbjct 87 ITKYMSALDVALLAGSAGRDAEGAKKNYEARKNELQTRLGDTDVTDDVRAGVNNLLDTGQ 146 Query 149 ALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMT 208 L++KV S+GLR+RVT YAP+LLTA+NVI+ASVRVD E+IR Q QGLSRAVGARGQMT Sbjct 147 MLVNKVAEGSLGLRERVTFYAPILLTAENVINASVRVDDERIRAQAQGLSRAVGARGQMT 206 Query 209 MQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIM 268 MQ+ILVTRGA+L EPQLR++M TLAGTEPSTLFGMS LGAGSP+ K LQQQMV+RMAIM Sbjct 207 MQKILVTRGAELPEPQLRTSMATLAGTEPSTLFGMSEVLGAGSPEAKTLQQQMVSRMAIM 266 Query 269 SDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAA 328 SDPA LV+NP+LL SIQ T DIA+QVI +TT +VTKSV +QA +RR++AI D LVLAA Sbjct 267 SDPASVLVDNPDLLRSIQTTDDIADQVIKNTTASVTKSVHAQAAERRNSAILDTALVLAA 326 Query 329 IATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGD-EPIPEPLAVYTTEE 387 I A+ VVL+VAR LV P+R LRDGALKVAHTDL+ EIA V+AG EPIP PL VYTTEE Sbjct 327 IVIALAVVLLVARALVRPLRTLRDGALKVAHTDLEEEIAHVKAGGAEPIPAPLPVYTTEE 386 Query 388 IGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEED 447 IGQVAHAVDELHT+ALLLAG+E RLRLLVN+MFETMSRRSRSLVDQQL++ID+LERNE++ Sbjct 387 IGQVAHAVDELHTQALLLAGDEARLRLLVNDMFETMSRRSRSLVDQQLALIDRLERNEDN 446 Query 448 PARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVD 507 P RLD+LFRLDHLAARLRRNSANLLVLAGA++ RD R+PVPL+TVI+AAVSEVEDYRRV+ Sbjct 447 PERLDNLFRLDHLAARLRRNSANLLVLAGAKLARDQRDPVPLATVINAAVSEVEDYRRVE 506 Query 508 IARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLG 567 IA +P+C+++GAAAGG IHL AELIDNALRYS PTT RV+A+ G +G V++RI+DSGLG Sbjct 507 IAGLPECSLLGAAAGGAIHLFAELIDNALRYSPPTTSARVSASRGGDGGVVVRIADSGLG 566 Query 568 MTDADRRMANMRLRAGGEVTPD----SARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTG 623 M DADRR+ANMRL+AGG+ PD +ARH+GLFVVGR+A HG+RVGLRGP E G+G Sbjct 567 MNDADRRIANMRLQAGGDANPDPHPENARHLGLFVVGRIAAWHGMRVGLRGPAANESGSG 626 Query 624 TTAEVYLPLAVLEGTAPAQPPKPRVF------------AIKPPCPEPAAADPTDVPAAIG 671 TTAEVYLP VL G A+P PR AI P E D T PAA G Sbjct 627 TTAEVYLPPTVLAGRVVAEPSGPRHIRAVSSPSAKLASAIAAPAEEGGRHDGTQQPAARG 686 Query 672 -------PLPPVTLLPRRTPGSSGI-------ADVPAQPMQQRRRELKTPWWE 710 PPVTLLPRR PGSSGI A +++RREL TPWWE Sbjct 687 TRNTGDASTPPVTLLPRRNPGSSGIADVAAVPAPPAEPQPRRQRRELATPWWE 739 Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/146 (69%), Positives = 111/146 (77%), Gaps = 8/146 (5%) Query 734 PAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSR-T 792 PA GP DDDVIYRRMLSEM+GDPH+L +SPDLDW+SVWD GW+ AA A DKPV+S T Sbjct 807 PAASTGPADDDVIYRRMLSEMLGDPHDLVNSPDLDWQSVWDRGWTLAAAAEDKPVESHTT 866 Query 793 DYGLPVREPGARLVPGAA--VPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRA 850 D+GLPVR PGARLVPG A PD E PG NG R P+HAA RDP+AVRA Sbjct 867 DHGLPVRTPGARLVPGGAHGAAAEPDDE-PGL----NGRSPAPRRPQHAAVARDPEAVRA 921 Query 851 SISSHFGGVRTGRSHARESSQGPNQQ 876 S SSHFGGVRTGRSHARESS+GP+QQ Sbjct 922 SFSSHFGGVRTGRSHARESSEGPDQQ 947 >gi|289444979|ref|ZP_06434723.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289417898|gb|EFD15138.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] Length=481 Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/455 (99%), Positives = 455/455 (100%), Gaps = 0/455 (0%) Query 1 VTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 +TMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV Sbjct 1 MTMFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMV 60 Query 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK Sbjct 61 LAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARK 120 Query 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID Sbjct 121 YELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVID 180 Query 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL Sbjct 181 ASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 Query 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT Sbjct 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 Query 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT Sbjct 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 Query 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF Sbjct 361 DLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMF 420 Query 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLF 455 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLF Sbjct 421 ETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLF 455 >gi|333991840|ref|YP_004524454.1| regultory protein [Mycobacterium sp. JDM601] gi|333487808|gb|AEF37200.1| putative regultory protein [Mycobacterium sp. JDM601] Length=945 Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/926 (57%), Positives = 630/926 (69%), Gaps = 90/926 (9%) Query 31 QRPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAIT 90 +RP WS RNWPVRWKV IALLP+++A V GLR+ A++ + LRLVA RAEMIPAIT Sbjct 30 KRPSRWSVRNWPVRWKVLAIALLPMLLAGVFGGLRISGALSEANRLRLVADRAEMIPAIT 89 Query 91 KYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQAL 150 YMSAL A++A+S+ D EGA+KNF R YELQ+RL+ TDV DVRSGV TL+ GQ L Sbjct 90 NYMSALGDALVAASSDGDAEGARKNFENRMYELQSRLSHTDVATDVRSGVGTLIERGQGL 149 Query 151 LDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQ 210 LD V +GLR+ VT YAP+LLTA++ I+ SVR+DSE+IR Q +GLSRAVGARGQM MQ Sbjct 150 LDAVSTAGLGLREEVTGYAPILLTAEDAINGSVRLDSERIRAQTEGLSRAVGARGQMMMQ 209 Query 211 EILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSD 270 E+LV RG ++ +P+LRS+M+TLAGTEPSTLFGM+ LG SPD K LQQQ+VTRMAIMSD Sbjct 210 ELLVNRGGEVPDPELRSSMMTLAGTEPSTLFGMTEVLGVDSPDAKALQQQLVTRMAIMSD 269 Query 271 PAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIA 330 P L NNP L SI+ T IA ++I + T AVT++V+ +A DRR AAIRD LVLAA Sbjct 270 PEQVLPNNPVLRDSIRTTDQIAARLIAENTGAVTRAVEERAADRRAAAIRDIALVLAATI 329 Query 331 TAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQ 390 ++ V +VAR+LV P+R LR+ AL+VAH+DL+ EIA VRAGDE P PL VYTTEE+GQ Sbjct 330 ATLLAVWLVARSLVRPLRTLRNSALRVAHSDLEHEIARVRAGDEREPAPLPVYTTEEVGQ 389 Query 391 VAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPAR 450 VAHAVDELH +ALLLAG+E RLR LVNEMFETMSRR+RSLVDQQL++ID+LERNE+DP R Sbjct 390 VAHAVDELHAQALLLAGDEARLRRLVNEMFETMSRRNRSLVDQQLALIDRLERNEDDPDR 449 Query 451 LDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIAR 510 L+SLFRLDHLAAR+RRN ANLLVLAGA++ + PL+T+ISAA SEVE Y+RV Sbjct 450 LESLFRLDHLAARMRRNGANLLVLAGARVPHERGRATPLATLISAAASEVEGYQRVRTVL 509 Query 511 VPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTD 570 VPD V+GAAA +HLLAELIDNALRYS+PT PVRV A + ++G V++ + D GLGMTD Sbjct 510 VPDVTVIGAAAADCVHLLAELIDNALRYSAPTEPVRVVAGLENDGGVVVEVVDVGLGMTD 569 Query 571 ADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGT-GTTAEVY 629 +D RMANMRL AGGE +P++ARHMGLFV+ RLA RHGI V L QG+ G TAEVY Sbjct 570 SDLRMANMRLAAGGEFSPENARHMGLFVISRLAHRHGIEVRL---FPASQGSRGITAEVY 626 Query 630 LP---LAVLEGTAPAQPP------KPRVFA-IKPPCP------EPAAA-------DPTDV 666 LP L+ E PA PP P + +P P EPA A +P + Sbjct 627 LPPHLLSYRETEEPAPPPYHAGPSHPEAYEHYQPDEPQLSETYEPAGAHERYEAHEPYED 686 Query 667 PAAIGPLPPVTLLPRRTPGSSGIADVPA-QPMQ--------QRRRELKTPWWE------D 711 GP P V+LLPRRTPGSSGI +PA P++ + RREL PWWE D Sbjct 687 SPESGPGPVVSLLPRRTPGSSGITGMPAGSPVRPPAEDEAGRERRELPQPWWEADEQAAD 746 Query 712 RFQQEPKQPPAPEPRPAPPPAKPAPPAGPV-------------------DDDVIYRRMLS 752 R +EP + EP P + PA + D D IY+RMLS Sbjct 747 RL-REPAEDAFAEPEPVIEKSSPADTSAYFGARARVRGATGDAGRNTGSDTDTIYQRMLS 805 Query 753 EMVG-DPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAAV 811 E +G DP+E DLDW+SVWD GWS AAE + PV + T++GLPVREPGARLVPG+A Sbjct 806 ESLGNDPYEPGLRADLDWQSVWDRGWSVAAEVENMPVAAHTEHGLPVREPGARLVPGSAE 865 Query 812 PEGPDR---------EHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTG 862 E P + G +ASNGG P A RDP A+R+SISSHFGGVR Sbjct 866 AEPPPAGSGPPAQRLDDTGEPVASNGG------PAREAPERDPAAIRSSISSHFGGVRAA 919 Query 863 RSHARESS------------QGPNQQ 876 RSHARES+ QG NQQ Sbjct 920 RSHARESNFEHDFENDLDTDQGQNQQ 945 >gi|254776760|ref|ZP_05218276.1| hypothetical protein MaviaA2_19136 [Mycobacterium avium subsp. avium ATCC 25291] Length=643 Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/619 (72%), Positives = 523/619 (85%), Gaps = 5/619 (0%) Query 29 PQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPA 88 P +RPP+WS NWPVRWKV I L+PL++A V LR+ AMA+ +GLRL AARA+++PA Sbjct 25 PAKRPPAWSLSNWPVRWKVLAIVLVPLMLATVFGVLRIHGAMANAAGLRLAAARADVVPA 84 Query 89 ITKYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQ 148 ITKYMSALDVA+LA S G D EGA+KN+ ARK ELQTRL DTDV DVR+GVN LL+ GQ Sbjct 85 ITKYMSALDVALLAGSAGRDAEGAKKNYEARKNELQTRLGDTDVTDDVRAGVNNLLDAGQ 144 Query 149 ALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMT 208 L++KV S+GLR+RVT YAP+LLTA+NVI+ASVRVD E+IR Q QGLSRAVGARGQMT Sbjct 145 MLVNKVAEGSLGLRERVTFYAPILLTAENVINASVRVDDERIRAQAQGLSRAVGARGQMT 204 Query 209 MQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIM 268 MQ+ILVTRGA+L EPQLR++M TLAGTEPSTLFGMS LGAGSP+ K LQQQMV+RMAIM Sbjct 205 MQKILVTRGAELPEPQLRTSMATLAGTEPSTLFGMSEVLGAGSPEAKTLQQQMVSRMAIM 264 Query 269 SDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAA 328 SDPA LV+NP+LL SIQ T DIA+QVI TT +VTKSV +QA +RR++AI D LVLAA Sbjct 265 SDPASVLVDNPDLLRSIQTTDDIADQVIKSTTASVTKSVHAQAAERRNSAILDTALVLAA 324 Query 329 IATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGD-EPIPEPLAVYTTEE 387 I A+ VVL+VAR LV P+R LRDGALKVAHTDL+ EIA V+AG EPIP PL VYTTEE Sbjct 325 IVIALAVVLLVARALVRPLRTLRDGALKVAHTDLEEEIAHVKAGGAEPIPAPLPVYTTEE 384 Query 388 IGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEED 447 IGQVAHAVDELHT+ALLLAG+E RLRLLVN+MFETMSRRSRSLVDQQL++ID+LERNE++ Sbjct 385 IGQVAHAVDELHTQALLLAGDEARLRLLVNDMFETMSRRSRSLVDQQLALIDRLERNEDN 444 Query 448 PARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVD 507 P RLD+LFRLDHLAARLRRNSANLLVLAGA++ RD R+PVPL+TVI+AAVSEVEDYRRV+ Sbjct 445 PERLDNLFRLDHLAARLRRNSANLLVLAGAKLARDQRDPVPLATVINAAVSEVEDYRRVE 504 Query 508 IARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLG 567 IA +P+C+++GAAAGG IHL AELIDNALRYS PTT RV+A+ G +G V++RI+DSGLG Sbjct 505 IAGLPECSLLGAAAGGAIHLFAELIDNALRYSPPTTSARVSASRGGDGGVVVRIADSGLG 564 Query 568 MTDADRRMANMRLRAGGEVTPD----SARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTG 623 M DADRR+ANMRL+AGG+ PD +ARH+GLFVVGR+A HG+RVGLRGP E G+G Sbjct 565 MNDADRRIANMRLQAGGDANPDPHPENARHLGLFVVGRIAAWHGMRVGLRGPAANESGSG 624 Query 624 TTAEVYLPLAVLEGTAPAQ 642 TTAEVYLP VL G A+ Sbjct 625 TTAEVYLPPTVLAGRVVAE 643 >gi|254822694|ref|ZP_05227695.1| hypothetical protein MintA_22384 [Mycobacterium intracellulare ATCC 13950] Length=658 Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/629 (72%), Positives = 527/629 (84%), Gaps = 2/629 (0%) Query 31 QRPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAIT 90 +RPP+WS NWPV WKV I L+PL++ V LR++ AM S + L+L A RA+++P IT Sbjct 29 KRPPAWSLSNWPVGWKVLAIVLVPLILVTVFGVLRIDTAMDSAARLKLAATRADVVPVIT 88 Query 91 KYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQAL 150 KYMSALDVA+ A S G DVEGA+KN+ ARK ELQ RLADTDV DVRSGVNTLL+ GQ L Sbjct 89 KYMSALDVALQAGSAGRDVEGAKKNYEARKGELQGRLADTDVTDDVRSGVNTLLDAGQML 148 Query 151 LDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQ 210 + K +GLR+RVT YAP+LLTA++VI+ASVRVD E IR Q QGLSRAVGARGQMTMQ Sbjct 149 VSKASDSGLGLRERVTLYAPILLTAEDVINASVRVDDEHIRAQAQGLSRAVGARGQMTMQ 208 Query 211 EILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSD 270 +IL+TRGA+L EPQLR++M TLAGTEPSTLFGMS LGAGSP+ K LQQQMV RMAIMSD Sbjct 209 KILITRGAELPEPQLRTSMATLAGTEPSTLFGMSEVLGAGSPEAKTLQQQMVARMAIMSD 268 Query 271 PAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIA 330 PA LV+N +LL S+Q T DIA+QVI + T +VTK+V +QA DRR AAI D VLVLAAI Sbjct 269 PASVLVDNADLLRSVQATDDIADQVIKNVTASVTKAVHAQAADRRSAAILDTVLVLAAIV 328 Query 331 TAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGD-EPIPEPLAVYTTEEIG 389 A+VVVL+VAR LV P+R+LRDGALKVAHTDL+ E+A V+AG EPIP PL VYTTEEIG Sbjct 329 IALVVVLLVARALVRPLRILRDGALKVAHTDLEEEVARVKAGGAEPIPTPLPVYTTEEIG 388 Query 390 QVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPA 449 QVAHAVDELHT+ALLLAG+E RLRLLVN+MFETMSRRSRSLVDQQL++ID+LERNEE+P Sbjct 389 QVAHAVDELHTQALLLAGDEARLRLLVNDMFETMSRRSRSLVDQQLALIDRLERNEENPE 448 Query 450 RLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIA 509 RLDSLFRLDHLAARLRRNSANLLVLAGAQ+ RD R+PVPL+TVI+AAVSEVEDYRRV+IA Sbjct 449 RLDSLFRLDHLAARLRRNSANLLVLAGAQLARDQRDPVPLATVINAAVSEVEDYRRVEIA 508 Query 510 RVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMT 569 +P+CA+VGAAAGG IHL AELIDNALRYS PTT VRV+A+ G +G V++RI+DSGLGM Sbjct 509 GLPECALVGAAAGGAIHLFAELIDNALRYSPPTTSVRVSASRGGDGGVVVRIADSGLGMN 568 Query 570 DADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVY 629 DADRR+ANMRL+AGG+V+PD+ARHMGLFVVGR+AGRHGIRVGLRGP E G+GTTAE+Y Sbjct 569 DADRRIANMRLQAGGDVSPDNARHMGLFVVGRIAGRHGIRVGLRGPAANETGSGTTAEIY 628 Query 630 LPLAVLEGTAPAQPPKPR-VFAIKPPCPE 657 LP VL G A A+ PR + A+ P + Sbjct 629 LPPTVLTGLAAAESAAPRHIRAVSSPSAK 657 >gi|289759522|ref|ZP_06518900.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289715086|gb|EFD79098.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length=418 Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/410 (99%), Positives = 410/410 (100%), Gaps = 0/410 (0%) Query 3 MFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLA 62 MFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLA Sbjct 1 MFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLA 60 Query 63 GLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARKYE 122 GLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARKYE Sbjct 61 GLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARKYE 120 Query 123 LQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDAS 182 LQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDAS Sbjct 121 LQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDAS 180 Query 183 VRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFG 242 VRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFG Sbjct 181 VRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFG 240 Query 243 MSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEA 302 MSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEA Sbjct 241 MSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEA 300 Query 303 VTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDL 362 VTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDL Sbjct 301 VTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDL 360 Query 363 DGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRL 412 DGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETR+ Sbjct 361 DGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRI 410 >gi|108798160|ref|YP_638357.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|119867256|ref|YP_937208.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. KMS] gi|126433819|ref|YP_001069510.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] gi|108768579|gb|ABG07301.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium sp. MCS] gi|119693345|gb|ABL90418.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. KMS] gi|126233619|gb|ABN97019.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium sp. JLS] Length=851 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/850 (54%), Positives = 574/850 (68%), Gaps = 31/850 (3%) Query 29 PQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPA 88 P +RP WSP NWPVRWKV I L+PLV+A V G R+ A + LRL A RAE+IP Sbjct 16 PPKRPSRWSPANWPVRWKVLAIVLVPLVLAGVFGGARIAANVDQAGELRLAAERAELIPD 75 Query 89 ITKYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQ 148 I YM+A++ V+A++ G E A + K L+ +LA TDV+ DVR V LL+ GQ Sbjct 76 INGYMAAMENVVVAATQGQQTESALAEYDTAKATLRQQLAATDVVPDVRLAVTNLLDLGQ 135 Query 149 ALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMT 208 L++KV A+++ LR RV YAPLLLTA+ I S R D + ++ + + LSRA+GARGQM Sbjct 136 DLVNKVTANAVDLRQRVITYAPLLLTAETAITGSARGDDQDVQMRAEALSRAIGARGQMA 195 Query 209 MQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIM 268 MQ++LVTRG ++ EP+LR+AM+T+AGTEPST+ GM+ LG S + L+ +M RM+++ Sbjct 196 MQQMLVTRGGEVPEPELRTAMITVAGTEPSTVSGMAELLGGASGEANTLRSEMFKRMSMI 255 Query 269 SDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAA 328 S+PAV L NPELL S +T DIA+++I DTT+A+ +V S A +R +AIRDAVL+L Sbjct 256 SNPAVVLTGNPELLQSQAVTADIADRMIADTTDAIPAAVTSAADAQRSSAIRDAVLILLV 315 Query 329 IATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIP-EPLAVYTTEE 387 A+V+VL+VAR+LV P+R LRD ALKVAH DL E+ VRAG EP P P+ VYTTEE Sbjct 316 FVAALVLVLLVARSLVRPLRRLRDSALKVAHEDLPEELDRVRAGAEPGPVPPIPVYTTEE 375 Query 388 IGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEED 447 IGQVAHAVDELH +A+LLAGE++RL+L +++MFET+SRRSRSLVDQQLS+ID+LER+E+D Sbjct 376 IGQVAHAVDELHEQAVLLAGEQSRLQLQISDMFETLSRRSRSLVDQQLSLIDRLERDEDD 435 Query 448 PARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVD 507 P RL+SLFRLDHLAAR+RRN ANLLVL+GA I RD EPVP++ VI+AA SEVEDY RV Sbjct 436 PERLESLFRLDHLAARMRRNGANLLVLSGASIPRDQAEPVPVAAVINAAASEVEDYTRVV 495 Query 508 IARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLG 567 A VPD ++G AAG ++HLLAEL+DNALRYS PT+ VRV+A G +++ + D+GLG Sbjct 496 TAGVPDSRIIGGAAGDLVHLLAELLDNALRYSPPTSQVRVSAMHTGNGGLVIEVGDTGLG 555 Query 568 MTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAE 627 M +AD R+AN RL++GGEVTP +ARHMGLFVVGRLA +HG V LR V E +GTT Sbjct 556 MAEADLRIANARLQSGGEVTPYTARHMGLFVVGRLAAQHGFVVRLRSTVVDEPNSGTTVG 615 Query 628 VYLPLAVLEGTAPAQPPK-------PRVFAIKPPCPEPAAADPTDVPAAIGPLPPVTLLP 680 VY+P +L T + P + PEPA A G LP Sbjct 616 VYVPAELLAYTDTGRQPHLPPTAPPQAAAPARHHRPEPAGDLNGHSDLAAGG------LP 669 Query 681 RRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQPPA--PEPRPAPPPAKPAPPA 738 +R PG+SGIA + RR + P F Q A RP P P P A Sbjct 670 QRNPGASGIAGTAGE-QTDPRRAVPAPTNTSSFFASRAQAAANGAHERPEPEPVA-NPNA 727 Query 739 GPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPV 798 G DD IY+ MLSE + DP +L S DLDWKSVWDHGWSAAA A + PV+ RTD GLPV Sbjct 728 GA--DDAIYQSMLSEWLVDPTDLGKSTDLDWKSVWDHGWSAAAAADEAPVRERTDEGLPV 785 Query 799 REPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGG 858 R+PGARLVPG A G D E A+ A + PR RDP+A+RAS+SSHFGG Sbjct 786 RDPGARLVPGGA-HRGDDSEEQVASAAGD-----DTPPR-----RDPEAIRASMSSHFGG 834 Query 859 VRTGRSHARE 868 V GR+H+RE Sbjct 835 VHAGRAHSRE 844 >gi|120402544|ref|YP_952373.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] gi|119955362|gb|ABM12367.1| integral membrane sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] Length=860 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/881 (50%), Positives = 560/881 (64%), Gaps = 76/881 (8%) Query 31 QRPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAIT 90 +RP + NWPVR KV I ++PL++A V GLR+ ++ + LR A RA+M+PA+ Sbjct 8 KRPAPLALSNWPVRVKVLAIVVVPLLLACVFGGLRIYSSATEAAELRHAAQRADMVPAVV 67 Query 91 KYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQAL 150 YM+AL+ A++ ++ G D A F +R+ LQ L T V VR NTL++ GQ L Sbjct 68 DYMAALEAAMVTATEGGDARQALTVFESRRTGLQHLLDVTPVDDGVRLATNTLIDFGQNL 127 Query 151 LDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQ 210 +DK+ AD+I LR RV YAPLL+T++ I V D E++R+ LSRAVGARGQM MQ Sbjct 128 IDKISADAIDLRTRVMTYAPLLITSETAITGLVGADDERVRSDADTLSRAVGARGQMAMQ 187 Query 211 EILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSD 270 +LV GA+L EP LRSAMVT+AGTEP+T+ M LG + L+ +MV RMA++S+ Sbjct 188 RMLVNSGAELPEPLLRSAMVTIAGTEPATVTAMGGYLGGATEQASTLRSEMVKRMALLSE 247 Query 271 PAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIA 330 P ALV NPELL S +IT DIA +I TTE + +V QA D R AAIRDA LV AAI Sbjct 248 PTTALVGNPELLASQKITGDIAAGLIAQTTEDIPAAVARQADDARTAAIRDAALVGAAIL 307 Query 331 TAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIP-EPLAVYTTEEIG 389 A+++V +VAR++V P+R LRD ALKVAH DL E+ VR+ + P +P+ V+TTEE+G Sbjct 308 VALILVTLVARSMVRPLRTLRDSALKVAHEDLPREVEHVRSDGKEFPVQPIPVHTTEEVG 367 Query 390 QVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPA 449 QVAHAVDELH +A++LAGE+ RL+L V +MFET+SRR+RSLVDQQLS+ID+LER+EEDP Sbjct 368 QVAHAVDELHQQAVMLAGEQARLQLQVTDMFETLSRRNRSLVDQQLSLIDRLERDEEDPD 427 Query 450 RLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIA 509 RL+SLFRLDHLAAR+RRN +NL+VLAGAQI+R+ E VP++ +++AA SEVEDY R+ Sbjct 428 RLESLFRLDHLAARMRRNGSNLMVLAGAQISRERAESVPVTALVNAAASEVEDYTRIVTT 487 Query 510 RVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMT 569 +PD V G AG ++HLLAEL+DNALRYS PTT VRV+A +++ +SD+GLGMT Sbjct 488 GLPDGEVDGVVAGDLVHLLAELLDNALRYSPPTTEVRVSAVPTGNNGLVIEVSDTGLGMT 547 Query 570 DADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVY 629 ++D R+AN RL +GGEV P +ARHMGLFVVGRLA HG+ V LR V GE +GTTA VY Sbjct 548 ESDLRVANTRLESGGEVNPYTARHMGLFVVGRLAASHGLVVRLRSTVAGEPDSGTTAGVY 607 Query 630 LPLAVLEGTAPAQPPKPRVFAIKPPCPEPAAADP-------TDVPAAI-------GPLPP 675 +P +L TAPAQ + + P PA A +VPA + P Sbjct 608 IPARLLIHTAPAQ------YGGRDDEPVPADAHAGIATALALEVPAGVPREAPAAAAGPA 661 Query 676 VTLLPRRTPGSSGIADVPAQ-PMQQRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKP 734 LLP+R PG+SGI + PA+ P+ ++TP P P P PP + Sbjct 662 TDLLPQRRPGASGIVETPAETPVAP----IETPVATSVAVVTPAATPVAAVTPVAPPVE- 716 Query 735 APPA------------GPVDDD--------------VIYRRMLSEMVGDPHELAHSPDLD 768 PPA P + + IY++MLSE + DPHEL+HS DL+ Sbjct 717 TPPARSEVAAFFSPRPQPTETNGHARHAAADSDPDDAIYQKMLSEWLVDPHELSHSTDLN 776 Query 769 WKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNG 828 WKSVWDHGWSAA A PV T GLPVR PGARLVPG A G +AS G Sbjct 777 WKSVWDHGWSAAEAAEAAPVLDHTAEGLPVRRPGARLVPGHA---------NGEPVASAG 827 Query 829 GLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHARES 869 RDP+AVR SI SHFGGV GR A+E+ Sbjct 828 --------------RDPEAVRNSIGSHFGGVHAGRLRAQET 854 >gi|118470327|ref|YP_886014.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium smegmatis str. MC2 155] gi|118171614|gb|ABK72510.1| periplasmic sensor signal transduction histidine kinase [Mycobacterium smegmatis str. MC2 155] Length=927 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/935 (47%), Positives = 570/935 (61%), Gaps = 116/935 (12%) Query 46 KVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASST 105 KV I L+PL++A GLR+ A++ + LRL A RAE+IP I YM+AL+ ++ASS Sbjct 4 KVLAIVLVPLILAATFGGLRIYASVTEAADLRLAADRAELIPDINNYMAALEGVLVASSG 63 Query 106 GHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRV 165 D + A F +RK ELQ R+ TDV+ DVR V T+L+ GQ L+D +A+++GLR R+ Sbjct 64 AGDGQAALATFDSRKSELQQRVDSTDVLGDVREAVGTMLDKGQTLVDASMANTVGLRQRI 123 Query 166 TAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQL 225 YAPLLLTA+ + S ++++T+ + L RA+GARGQMT+QE++V RGA+ EP L Sbjct 124 LDYAPLLLTAEAAVTGSTHSADQRVQTEAEALGRAIGARGQMTIQEMMVNRGAEEPEPVL 183 Query 226 RSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSI 285 R +M+T+AGTEPST+ ++ LG+ S D L+ +MV RMAIM++P + LV NP LL S+ Sbjct 184 RKSMITMAGTEPSTVAALTKVLGSASDDATTLRDEMVKRMAIMANPGIPLVGNPVLLESL 243 Query 286 QITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVG 345 + TR IAEQ+ITD T A+ +V+++A D R+ AIRD+VLV A+ +A+VVVL+VAR+LV Sbjct 244 ENTRKIAEQIITDNTSAIPAAVEAEAADARNDAIRDSVLVALAVISALVVVLLVARSLVR 303 Query 346 PMRVLRDGALKVAHTDLDGEIAAVRAGDEPIP-EPLAVYTTEEIGQVAHAVDELHTRALL 404 P+R LRDGALKVAH DL EI VRAG EP P PL VYT+EE+GQVAHAVDELH +A+ Sbjct 304 PLRTLRDGALKVAHEDLAKEIERVRAGGEPGPITPLPVYTSEEVGQVAHAVDELHEQAVF 363 Query 405 LAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARL 464 LAGE+ +L+L V +MFET+SRRSRSLVDQQLS+ID+LERNE+DP RL+SLFRLDHLAAR+ Sbjct 364 LAGEQAQLQLQVADMFETLSRRSRSLVDQQLSLIDELERNEDDPQRLNSLFRLDHLAARM 423 Query 465 RRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGV 524 RRN ANLLVL+GA++TR+ EPV ++TVI+AA SEVEDY RV + V D VVG+AAG + Sbjct 424 RRNGANLLVLSGAKVTREKSEPVAVATVINAAASEVEDYTRVVTSDVADADVVGSAAGDL 483 Query 525 IHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGG 584 IHLLAEL+DNALRYS PT+ VRV+A G++++ ++D GLGMT++D R+AN+RL++GG Sbjct 484 IHLLAELLDNALRYSPPTSQVRVSAVFAGNGALVIEVADVGLGMTESDLRVANIRLKSGG 543 Query 585 EVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTA-PAQP 643 EV P +ARHMGLFVVGRLA +HG+ V LR + E G+GTTA VY+P +L A A Sbjct 544 EVNPYTARHMGLFVVGRLADQHGLVVRLRSTIPDEPGSGTTAGVYVPAQLLVTEAGTAGT 603 Query 644 PKPRVFAIKPPCPEPAAADPTDVPAAIG-PLPPVT------------LLPRRTPGSSGIA 690 P F +P A PT P + VT LLP+R PG+SGI+ Sbjct 604 PAFDQFDAQPEDAATAPGHPTGYPNVVSLDTRFVTTGSEHDDDLAAGLLPQRNPGASGIS 663 Query 691 DVPA-----QPMQQRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPAPPAGPVD--- 742 ++P +P + + + W P+Q PAP+ AP P P D Sbjct 664 EMPGVFAEPEPAAEVSGDAQGEW--------PQQWPAPQEAAAPEEVAPQANGRPTDTSS 715 Query 743 ----------------------------------------------DDVIYRRMLSEMVG 756 DD + +R E G Sbjct 716 FFASRAQAAGGTQNGAQVNGVHLDGAHTNGAANGTADSFTGFFGSSDDQLDQR---EPAG 772 Query 757 DP---------HELAHSPDLDWKSV---WDHGW----SAAAEAADKPVQSRTDYGLPVRE 800 DP E A P +S W W S AA A D PV T+ GLP+R Sbjct 773 DPGDSIYQSMVSEFAIDPTTHARSADLDWQTVWEKGWSVAAAAQDAPVDRHTEEGLPMRT 832 Query 801 PGARLVPG-----AAVPEGPD-REHPGAALASNGGLHPGRAPRHAAAV------------ 842 PGARLVPG A G + H NG +H A A Sbjct 833 PGARLVPGGVAAAAGRTNGANGHHHSDLNGGVNGEIHGNDNGAEAVASANEADNGMFAAF 892 Query 843 --RDPDAVRASISSHFGGVRTGRSHARESSQGPNQ 875 RDP+AVRASISSHFGGV GRSHARE+ N+ Sbjct 893 KPRDPEAVRASISSHFGGVHAGRSHARETRGTDNE 927 >gi|315445818|ref|YP_004078697.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1] gi|315264121|gb|ADU00863.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1] Length=789 Score = 599 bits (1544), Expect = 8e-169, Method: Compositional matrix adjust. Identities = 332/609 (55%), Positives = 425/609 (70%), Gaps = 1/609 (0%) Query 28 KPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIP 87 +P QRP W+P NWPVR KV + +PLV+A V GLR+ A+ L A RA+M+P Sbjct 6 RPDQRPSRWAPPNWPVRVKVLALVTVPLVLACVFGGLRISASTVEARELAHAADRAQMVP 65 Query 88 AITKYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGG 147 A+ YM+AL A++ + G + A F RK EL L DV VR NTLL G Sbjct 66 AVVDYMAALQNAMVTAGGGGNPAAALGEFDFRKAELSRVLEGADVDDSVRLATNTLLEYG 125 Query 148 QALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQM 207 Q LLD++ A + LR +V + PLL+TAQ + SV D + +RT+ LSRAVGARGQM Sbjct 126 QNLLDRIGAAEMDLRTQVMTFGPLLITAQTALTGSVGSDEDSVRTEADVLSRAVGARGQM 185 Query 208 TMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAI 267 MQ++LVTRG +L EP LRSAMVTLAGTEP+T+ M LG S L+ QMV RM++ Sbjct 186 AMQDMLVTRGGELPEPLLRSAMVTLAGTEPATVTAMGTFLGGASDRADALRSQMVRRMSL 245 Query 268 MSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLA 327 +SDPAV LV NPELL S +IT DIA+ +I + + V QA D R AAIRD+VLV A Sbjct 246 LSDPAVVLVGNPELLMSQKITADIAQSLINRIADEIPARVSRQADDARTAAIRDSVLVGA 305 Query 328 AIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRA-GDEPIPEPLAVYTTE 386 AI A+++VL VAR+LV P+R LRD AL+VAH DL E+ VR G E +P+ V+TTE Sbjct 306 AILVALILVLWVARSLVRPLRTLRDSALRVAHDDLGREVERVRDDGKEFAVDPIPVHTTE 365 Query 387 EIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEE 446 E+GQVAHAVDELH +AL+LAG + RL+L V +MFET+SRR+RSLV+QQLS+ID LER+EE Sbjct 366 EVGQVAHAVDELHQQALVLAGAQARLQLQVTDMFETLSRRNRSLVEQQLSLIDGLERDEE 425 Query 447 DPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRV 506 DP RL SLF+LDHLAAR+RRN ANLLVLAGA+I+ D EPV ++ +++AA SEVE+Y R+ Sbjct 426 DPDRLQSLFQLDHLAARMRRNGANLLVLAGARISHDRAEPVAVAAIVNAAASEVEEYPRI 485 Query 507 DIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGL 566 +PD V +AAG ++HLLAEL+DN LRYS P T VRV+A +++ +SD+GL Sbjct 486 VTGDLPDSEVAASAAGDLVHLLAELLDNGLRYSPPHTQVRVSAVPTGNNGLVIEVSDTGL 545 Query 567 GMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTA 626 GMT+AD R+ANMRL +GGEV P +ARHMGLFVV RLA +HG+ LR V G+ +GTTA Sbjct 546 GMTEADLRVANMRLESGGEVNPYTARHMGLFVVSRLAAQHGLVARLRSTVAGQPDSGTTA 605 Query 627 EVYLPLAVL 635 VY+P +L Sbjct 606 GVYIPARLL 614 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 71/128 (56%), Positives = 82/128 (65%), Gaps = 22/128 (17%) Query 743 DDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPG 802 DD IY++MLSE + DPHEL+HS DL+WKSVWD+GWSAA A PV+ RT GLPVR PG Sbjct 680 DDTIYQKMLSEWLVDPHELSHSSDLNWKSVWDNGWSAAEAADSAPVRHRTPEGLPVRRPG 739 Query 803 ARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTG 862 ARL+PG A E NG H VRDPDAVRAS+ HFGGV G Sbjct 740 ARLIPGHADTE-------------NG---------HPLPVRDPDAVRASLGGHFGGVHAG 777 Query 863 RSHARESS 870 R HARE++ Sbjct 778 RRHAREAA 785 >gi|289759520|ref|ZP_06518898.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289715084|gb|EFD79096.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length=261 Score = 525 bits (1351), Expect = 2e-146, Method: Compositional matrix adjust. Identities = 258/261 (99%), Positives = 260/261 (99%), Gaps = 0/261 (0%) Query 616 VTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPP 675 +TGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPP Sbjct 1 MTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPP 60 Query 676 VTLLPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPA 735 VTLLPRRTPGS GIADVPAQPM+QRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPA Sbjct 61 VTLLPRRTPGSRGIADVPAQPMRQRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPA 120 Query 736 PPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYG 795 PPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYG Sbjct 121 PPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYG 180 Query 796 LPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSH 855 LPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSH Sbjct 181 LPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSH 240 Query 856 FGGVRTGRSHARESSQGPNQQ 876 FGGVRTGRSHARESSQGPNQQ Sbjct 241 FGGVRTGRSHARESSQGPNQQ 261 >gi|289752075|ref|ZP_06511453.1| signal transduction histidine kinase [Mycobacterium tuberculosis T92] gi|289692662|gb|EFD60091.1| signal transduction histidine kinase [Mycobacterium tuberculosis T92] Length=259 Score = 504 bits (1297), Expect = 3e-140, Method: Compositional matrix adjust. Identities = 255/256 (99%), Positives = 256/256 (100%), Gaps = 0/256 (0%) Query 339 VARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDEL 398 +ARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDEL Sbjct 1 MARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDEL 60 Query 399 HTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLD 458 HTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLD Sbjct 61 HTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLD 120 Query 459 HLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVG 518 HLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVG Sbjct 121 HLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVG 180 Query 519 AAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANM 578 AAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANM Sbjct 181 AAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANM 240 Query 579 RLRAGGEVTPDSARHM 594 RLRAGGEVTPDSARHM Sbjct 241 RLRAGGEVTPDSARHM 256 >gi|54026939|ref|YP_121181.1| putative histidine kinase [Nocardia farcinica IFM 10152] gi|54018447|dbj|BAD59817.1| putative histidine kinase [Nocardia farcinica IFM 10152] Length=868 Score = 417 bits (1072), Expect = 5e-114, Method: Compositional matrix adjust. Identities = 318/895 (36%), Positives = 457/895 (52%), Gaps = 96/895 (10%) Query 36 WSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSA 95 +S NWPV KV + LLP+V+A A LR+ + + + L +A +I + ++ SA Sbjct 10 FSLSNWPVTRKVGIVLLLPVVLASTFAVLRINDELRTIADLDAATDQARIIRPMLEFASA 69 Query 96 LD-VAVLASSTGHDVEGA----QKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQAL 150 + +AV+ ++ + EGA F +LQT L DV + ++ + G+ + Sbjct 70 TEQLAVVTATVWENDEGAVDRAGTRFDQAAVDLQTVLRSGGAPEDVINELDEAVTTGRTM 129 Query 151 LDKVLADS---IGLR-DRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQ 206 + + + S IG + D+V A+ N I S ++ I+ L AR Sbjct 130 RNSLRSSSPVSIGQQADQVAAHI------GNAIARSTSLEEISIQRYFLQLGVTTNARRL 183 Query 207 MTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVT-RM 265 +T Q +L+ P +R ++T AG E L A L S N+ V R+ Sbjct 184 LTQQYLLIGSPGAERNPAVRPTVLTTAGGE-LVLLSQYAQLQPASALNANILIDAVNVRL 242 Query 266 AIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLV 325 + ++ ++ S++ + ++ +A+ + + D R +RD +V Sbjct 243 GAFAQNIENPASSQPVIDSLRTSVKAYDESTLSLVDAIDNRLADRTADVRGVVLRDIAIV 302 Query 326 LAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGD-EPIPEPLAVYT 384 + + + + L VAR+LV P+R LR GAL+VAH DL E+ VR+G P P + V+T Sbjct 303 VTTLLAGLALALAVARSLVLPIRRLRHGALQVAHVDLPNELEVVRSGGATPEPTRVDVHT 362 Query 385 TEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERN 444 TEEIGQ+A AVD++H AL LA E+ RLRL + MFET+SRRS+SLV+QQLS+I++LE + Sbjct 363 TEEIGQLARAVDDIHGAALHLAAEQARLRLQIGSMFETLSRRSQSLVEQQLSLIEELEHD 422 Query 445 EEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYR 504 E+D RL SLFRLDHLA R+RRN NLLVLAG + R H PVPLS ++ +AVS+VEDY+ Sbjct 423 EDDSQRLQSLFRLDHLATRMRRNGDNLLVLAGTALRRGHLPPVPLSDMLWSAVSQVEDYQ 482 Query 505 RVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDS 564 RV+I PD V G A + HLLAELIDNALRYS PTT V V+ A +G L+ I D Sbjct 483 RVEIGAAPDGVVPGEPAVDIEHLLAELIDNALRYSPPTTSVAVSVARSVDGGYLIEIIDR 542 Query 565 GLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGT 624 GLGM+ D + N L +GGEVT ++AR MGLFVVGRLA RH I V LR Q G Sbjct 543 GLGMSAEDLQTVNSHLASGGEVTVETARRMGLFVVGRLAKRHNITVNLRRTSAMTQQPGI 602 Query 625 TAEVYLPLAVLEGTAPAQPPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPPVTLLPRRTP 684 TA V+LP +++ P P+ PP PEP+ P+ P PP L+P +P Sbjct 603 TASVHLPGSLVTAVPPNDK-HPQELLAPPPMPEPSYDAPSQ------PTPPRILVPVPSP 655 Query 685 G---SSGIADVPAQPMQQRRRELKTPWWEDRFQQEP-KQPPAPEP-RPAPPPA------- 732 + ++ + QRR ++ +R P + P P P RP PPA Sbjct 656 ALPEHTSSFELSGSGLPQRRPAIRVAPAPEREAGRPGTEAPEPAPGRPLDPPAHTGSFPA 715 Query 733 ---------------------KPAPPAGPVDDDV-------------IYRRMLSEMVGDP 758 +PA PA P + IY+RM+SE + +P Sbjct 716 EPTKVDVWAEAEPDAYEAAGYEPAEPAQPAQTTMTGLRPVNAESPTPIYQRMVSEWLVEP 775 Query 759 HELAHSPDLDWKSV-WDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDR 817 + S D GW+AAAEA+ V RT+ GLP+R PGA+LVPG Sbjct 776 ASSGSEGEGGGWSSPGDIGWAAAAEASKPQVSGRTNGGLPIRRPGAQLVPG--------- 826 Query 818 EHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHARESSQG 872 G AP + + RDP+ +R S++ H GVR+GR+ A+ + G Sbjct 827 ---------------GLAPTNESNARDPEEIRNSLTRHLSGVRSGRADAQYNDGG 866 >gi|111020664|ref|YP_703636.1| hypothetical protein RHA1_ro03675 [Rhodococcus jostii RHA1] gi|110820194|gb|ABG95478.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=941 Score = 372 bits (954), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 245/643 (39%), Positives = 372/643 (58%), Gaps = 34/643 (5%) Query 32 RPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITK 91 R W W +RWKV + +P+ VAMVL GLRV+ +++ A + ++P I Sbjct 8 RAKFWDIEGWGLRWKVTAVLAVPVTVAMVLGGLRVQGELSNAVHFTEAADQIVVVPDIVA 67 Query 92 YMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQALL 151 +++ ++G + +++ A ++ + + ++ V S +N ++ G+ALL Sbjct 68 LEASMGTVTSGYASGTLTKQDREDAEALMNDVSEQARNPELDPAVASSINQTVSDGRALL 127 Query 152 DKVLADSIG-----LRDRVTAYAPLLLTAQNVIDASVR--VDSEQIRTQVQGLSRAVGAR 204 + L DS G L +R A+A + +D VR DSE + Q L+ A A+ Sbjct 128 N--LMDSPGVATDLLAERQRAFAADFIRE---VDDIVRPIEDSEVVDKGYQ-LTNAWQAQ 181 Query 205 GQMTMQEI-LVTRGADLAEPQLR----------SAMVTLAGTEPSTLFGMSAALGAGSPD 253 ++ Q + LV A P R SA++ AG E S L + G Sbjct 182 RRLFDQAMGLVIVKDVYAAPDGREKARTGDIPTSAVIAAAGAESSLLDVLDRYYPKGDAR 241 Query 254 TKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQI------TRDIAEQVITDTTEAVTKSV 307 + L+ + R A++ D +A +L +Q+ +RD+ +++ ++ + + +V Sbjct 242 LETLRNNINDRNALI-DQGLADAARGGMLPILQLRSSLIASRDVYQELTSEAAKDIASTV 300 Query 308 QSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIA 367 Q +A + R AA+RD +VL + A+V+ L+V+R+L+GP+R LR GALK A DL I Sbjct 301 QVRAAETRSAALRDTAIVLGTLLAALVLALLVSRSLIGPIRRLRYGALKAARRDLPEAIE 360 Query 368 AVRAGDEPIP---EPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMS 424 ++A D+P EP+AV+++EEIGQ+A AVD++H +AL LAGE+ +LRL +N+MFET++ Sbjct 361 QIKASDDPRALSFEPVAVHSSEEIGQLARAVDDIHGQALKLAGEQAQLRLQINDMFETLA 420 Query 425 RRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHR 484 RRS+SLVDQQL +I+ LE E+DP RL+SLFRLDHLAAR+RRN NLL+LAG ++ R Sbjct 421 RRSKSLVDQQLGLIENLEFEEKDPKRLESLFRLDHLAARMRRNGENLLILAGTRVRRSQA 480 Query 485 EPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTP 544 P+PL V+ AA+SEVEDY+RV + P+ A+ G V+HLLAEL+DN+LR S P T Sbjct 481 APIPLGDVLRAAISEVEDYQRVQMGATPEGALSGTVVTDVVHLLAELVDNSLRASPPDTV 540 Query 545 VRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAG 604 V + A +G VLL I+D G+G+ D R N RL +GGEV P++ARHMGLFVV RLA Sbjct 541 VTFSFARAVDGGVLLEIADRGIGIPADDMRAVNERLASGGEVGPETARHMGLFVVSRLAK 600 Query 605 RHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPR 647 RHG+ V LR + G T +++P A++ A Q P+ Sbjct 601 RHGLTVRLRSTFDTARNPGVTVSIHIPNALIVSQAARQDTGPQ 643 Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 65/213 (31%), Positives = 88/213 (42%), Gaps = 56/213 (26%) Query 679 LPRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQPPAP--------------- 723 LP R P ++ PAQ Q P E+R + + PAP Sbjct 745 LPVRRPQAATSETAPAQSQPQ-----HAPRSENRIEARTAEQPAPPSSNGDDQAPVRHRY 799 Query 724 -----------EPRPAPPPAKPAP-PAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKS 771 + R PPPA+ P P G I+ M+S+ + DP +P + W S Sbjct 800 RTNSAKTASFFQSRIDPPPAEATPRPGGGTP---IFSDMVSDWLTDPTGAEGAPGV-WHS 855 Query 772 VWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLH 831 D GWSAA ++ PV+ + GLP R PG RLVPG G + Sbjct 856 AGDAGWSAAERISETPVEVDPEIGLPKRRPGDRLVPGTV----------------EGAHN 899 Query 832 PGRAPRHAAAVRDPDAVRASISSHFGGVRTGRS 864 G R VRDP+ +RA++S H GVR GR+ Sbjct 900 TGTLRR----VRDPETIRANLSRHQQGVRNGRA 928 >gi|229488551|ref|ZP_04382417.1| periplasmic sensor signal transduction histidine kinase [Rhodococcus erythropolis SK121] gi|229324055|gb|EEN89810.1| periplasmic sensor signal transduction histidine kinase [Rhodococcus erythropolis SK121] Length=951 Score = 371 bits (953), Expect = 3e-100, Method: Compositional matrix adjust. Identities = 321/956 (34%), Positives = 460/956 (49%), Gaps = 168/956 (17%) Query 36 WSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSA 95 WS W + WKV + LP++VA+VL LRV+ + + L + RA +PA SA Sbjct 15 WSIGEWRLGWKVIAVLALPMIVAVVLGALRVQTELEGAAQLSSSSERALAVPAAINLESA 74 Query 96 LDVAVLASSTGHDVEGAQKNFT---------ARKYELQTRLAD--TDVIADVRSGVNTLL 144 L A+S D A + + AR ++ L D T +A+ RS + Sbjct 75 LYELAEAASARTDTGPATQAVSDAMDQLVDAARAFQSDDDLNDQVTSALAESRSITEEVA 134 Query 145 NGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGAR 204 G A+ L +G R L T +V++ S R +R + LS AR Sbjct 135 AG--AVAPARLVSRVGEVSRA-----LSSTFTSVVEHSQR---PALREEGGRLSALWDAR 184 Query 205 GQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDT-KNLQQQMVT 263 + Q IL G+ + Q R++MV+ AG E L + A GS DT + L Sbjct 185 RALAEQRILF--GSGDPDQQARTSMVSAAGAELVALNNILAI--DGSNDTVRTLSNSAQN 240 Query 264 RM-AIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDA 322 R+ A+ S P+ + + + + ++ D + T +V +++ R AA+RD Sbjct 241 RINALGSTPSTSPLGS-RVGTDLKSGNDQYNSLTDTTVTEFGDTVTAESNAARTAALRDT 299 Query 323 VLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAG---DEPIPEP 379 +VL A+ A+ + LV++R+L+ P+R LR AL+ A L I +RAG D+ Sbjct 300 AIVLGAVLLALAIALVISRSLIDPIRRLRFAALQAARRGLPDAIERIRAGASIDDVDFAR 359 Query 380 LAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVID 439 + + T EEIG++A AVD++H +A+ LAGE+ LR VN+MFET+SRR++SLVDQQL +I+ Sbjct 360 VPIRTHEEIGELARAVDDMHGQAITLAGEQATLRRQVNDMFETLSRRNKSLVDQQLGLIE 419 Query 440 QLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSE 499 QLE++E+DP RL++LFRLDH+AAR+RRN NLLVLAG + R PV L ++ AAVS Sbjct 420 QLEQDEDDPRRLENLFRLDHIAARMRRNGDNLLVLAGTDVRRARTAPVALGDILRAAVSG 479 Query 500 VEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLL 559 VE+YRRV++ ++P V G AA V+HL+AEL+DN+LRYS P T V + AA +GS+++ Sbjct 480 VEEYRRVELGQIPPGVVTGHAAPDVVHLIAELLDNSLRYSPPETTVSINAARTIDGSMIV 539 Query 560 RISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGE 619 I+D G+GM+ AD AN RL AGGE++ D+AR MGLFVV R++ R+ I V LR T Sbjct 540 EIADLGIGMSPADILDANERLAAGGEMSADTARRMGLFVVSRISRRYNISVRLRPTATSS 599 Query 620 QGTGTTAEVYLPLAVLEGT------APAQPPKPRVFAIKPPCP-EPAAADP--------- 663 +G TA V LP ++L+ + P P P + PP P EP+ + P Sbjct 600 THSGITATVLLPTSILDSSRGPEIRTPRTGPVPTLDRTPPPAPSEPSWSQPVPTELAPPR 659 Query 664 -----------------TDVPAAIGPLPPVTL--------LPRRTPGSSGIADV------ 692 TD P+ P ++ LPRRTPG+SG+ V Sbjct 660 PATRSFADLPRRTPSNSTDRTETFAPITPQSIPTTTAPSGLPRRTPGTSGVPAVSTSTPT 719 Query 693 ---PAQ--------------------PMQQRRRELKTPWWEDRFQQEPKQPPAPEPRPAP 729 PA P++ E +P Q P+ P P P P Sbjct 720 TAAPATSVSSFAPLPDPEGTSASTSLPVRTPSPEFTSP------AQGPEIPVGPHPSTTP 773 Query 730 PPAKPAPPAGPVDDDV-------------------------------------IYRRMLS 752 PP P P + I+ RM+S Sbjct 774 PPRHRLSPPTPTNTAAFFSSRTRDGLSARASTRADGAGDGNSNGVLAVPTTMPIFARMVS 833 Query 753 EMVGDP--HELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAA 810 E + DP A S W + D GW AA + + PV D GLP+R+ GARLVPG A Sbjct 834 EWLVDPTAETSAASTGSAWTTDADQGWLAARTSFEMPVTKIADSGLPIRDRGARLVPG-A 892 Query 811 VPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHA 866 V G G RHA+ +P V+ SS+ GV+ GR A Sbjct 893 VGRG------------------GTTQRHAS---NPADVQRGWSSYQSGVQRGRRRA 927 >gi|226362904|ref|YP_002780684.1| hypothetical protein ROP_34920 [Rhodococcus opacus B4] gi|226241391|dbj|BAH51739.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=943 Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 241/642 (38%), Positives = 370/642 (58%), Gaps = 32/642 (4%) Query 32 RPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITK 91 R W W +RWKV + +P+ VAMVL GLRV+ +++ A + ++P I Sbjct 8 RAKFWDIEGWGLRWKVTAVLAVPVTVAMVLGGLRVQGELSNAVHFTEAADQIVVVPDIVA 67 Query 92 YMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQALL 151 +++ ++G + + + + ++ + + ++ V S +N ++ G+ALL Sbjct 68 LEASMGTVTSGYASGTLTKEDRADAESLMNDVSEQARNPELDPAVASSINQTVSDGRALL 127 Query 152 DKVLADSIG-----LRDRVTAYAPLLLTAQNVIDASVR-VDSEQIRTQVQGLSRAVGARG 205 + L DS G L +R A+A + +D VR ++ ++ + L+ A A+ Sbjct 128 N--LMDSPGVATDLLAERQRAFAADFIRE---VDDIVRPIEDSEVVDKGYELTNAWQAQR 182 Query 206 QMTMQEI-LVTRGADLAEPQLR----------SAMVTLAGTEPSTLFGMSAALGAGSPDT 254 ++ Q + LV A P R SA+V AG E S L + G Sbjct 183 RLFEQAMGLVIVKDAYAGPDGREKARTGDIPTSAVVAAAGAESSLLDVLDRYYPKGDERL 242 Query 255 KNLQQQMVTRMAIMSDPAVALVNNPELLHSIQI------TRDIAEQVITDTTEAVTKSVQ 308 + L+ + R A++ D +A +L +Q+ +RD+ +++ + + + +VQ Sbjct 243 QALRNNINDRNALI-DQGLADAARGGVLPILQLRSSLIASRDVYQELTSAAAKDIAATVQ 301 Query 309 SQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAA 368 +A + R AA+RD +VL + A+V+ L+V+R+L+GP+R LR GALK A DL I Sbjct 302 IRAAETRSAALRDTAIVLGTLLAALVLALLVSRSLIGPIRRLRYGALKAARRDLPDAIEQ 361 Query 369 VRAGDEPIP---EPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSR 425 ++A D+P EP+AV+++EEIGQ+A AVD++H +AL LAGE+ +LRL +N+MFET++R Sbjct 362 IKASDDPRALSFEPVAVHSSEEIGQLARAVDDIHGQALKLAGEQAQLRLQINDMFETLAR 421 Query 426 RSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHRE 485 RS+SLVDQQL +I+ LE E+DP RL+SLFRLDHLAAR+RRN NLL+LAG ++ R Sbjct 422 RSKSLVDQQLGLIENLEFEEKDPKRLESLFRLDHLAARMRRNGENLLILAGTRVRRSQAA 481 Query 486 PVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPV 545 P+PL V+ AA+SEVEDY+RV + P+ A+ G V+HLLAEL+DN+LR S P T V Sbjct 482 PIPLGDVLRAAISEVEDYQRVQMGATPEGALSGTVVTDVVHLLAELVDNSLRASPPDTVV 541 Query 546 RVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGR 605 + A +G VLL I+D G+G+ D R N RL +GGEV P++ARHMGLFVV RLA R Sbjct 542 TFSFARAVDGGVLLEIADRGIGIPADDMRAVNERLASGGEVGPETARHMGLFVVSRLAKR 601 Query 606 HGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPR 647 HG+ V LR + G T +++P A++ A Q P+ Sbjct 602 HGLTVRLRSTFDTARNPGVTVSIHIPNALIVSQAARQDTGPQ 643 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/119 (37%), Positives = 59/119 (50%), Gaps = 21/119 (17%) Query 746 IYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARL 805 I+ M+S+ + DP +P + W S D GWSAA ++ PV+ + GLP R PG RL Sbjct 833 IFSDMVSDWLTDPTGAEGAPGV-WHSAGDAGWSAAERISETPVEVDPEIGLPKRRPGDRL 891 Query 806 VPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRS 864 VPG G + G R VRDP+ +RA++S H GVR GR+ Sbjct 892 VPGTV----------------EGAHNTGTLRR----VRDPETIRANLSRHQQGVRNGRA 930 >gi|226308031|ref|YP_002767991.1| hypothetical protein RER_45440 [Rhodococcus erythropolis PR4] gi|226187148|dbj|BAH35252.1| hypothetical protein RER_45440 [Rhodococcus erythropolis PR4] Length=951 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 320/958 (34%), Positives = 458/958 (48%), Gaps = 172/958 (17%) Query 36 WSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSA 95 WS W + WKV + LP++VA+VL LRV+ + + L + RA +PA SA Sbjct 15 WSIGEWRLGWKVIAVLALPMIVAVVLGALRVQTELEEAAQLSSSSERALAVPAAINLESA 74 Query 96 LDVAVLASSTGHDVEGAQKNFT---------ARKYELQTRLAD--TDVIADVRSGVNTLL 144 L A+S D A + + AR ++ L D T +A+ RS + Sbjct 75 LYELAEAASARTDTGPATQAVSDAMDQLVDAARAFQSDGDLNDQVTSALAESRSITEEIA 134 Query 145 NGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGAR 204 G A+ L +G R L T +V++ S R +R Q LS AR Sbjct 135 AG--AVAPARLVSRVGEVSRA-----LSSTFTSVVEHSQR---PVLREQGGRLSALWEAR 184 Query 205 GQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDT-KNLQQQMVT 263 + Q IL G+ + Q R++MV+ AG E L + A GS DT + L Sbjct 185 RALAEQRILF--GSGDPDQQARTSMVSAAGAELVALNNILAI--DGSNDTVQTLSNSAQN 240 Query 264 RM-AIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDA 322 R+ A+ S P+ + + + + ++ D + T +V +++ R AA+RD Sbjct 241 RINALGSTPSTSPLGS-RVGADLKSGNDQYNSLTDTTVTEFGDTVTAESNAARTAALRDT 299 Query 323 VLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAG---DEPIPEP 379 +VL A+ A+ + LV++R+L+ P+R LR AL+ A L I +RAG DE Sbjct 300 AIVLGAVLLALAIALVISRSLIDPIRRLRFAALQAARRGLPDAIERIRAGASTDELDFAR 359 Query 380 LAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVID 439 + + T EEIG++A AVD++H +A+ LAGE+ LR VN+MFET+SRR++SLVDQQL +I+ Sbjct 360 VPIRTHEEIGELARAVDDMHGQAITLAGEQATLRRQVNDMFETLSRRNKSLVDQQLGLIE 419 Query 440 QLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSE 499 QLE++E+DP RL++LFRLDH+AAR+RRN NLLVLAG + R PV L + AAVS Sbjct 420 QLEQDEDDPRRLENLFRLDHIAARMRRNGDNLLVLAGTDVRRARTAPVALGDTLRAAVSG 479 Query 500 VEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLL 559 VE+YRRV++ ++P V G AA V+HL+AEL+DN+LRYS P T V + AA +GS+++ Sbjct 480 VEEYRRVELGQIPPGVVTGHAAPDVVHLIAELLDNSLRYSPPETTVSINAARTIDGSMIV 539 Query 560 RISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGE 619 I+D G+GM+ AD AN RL AGGE++ D+AR MGLFVV R++ R+ I V LR T Sbjct 540 EIADLGIGMSPADILDANERLAAGGEMSADTARRMGLFVVSRISRRYNISVRLRPTATSS 599 Query 620 QGTGTTAEVYLPLAVLEG----------TAP------------------------AQPPK 645 +G TA V LP ++L+ T P + PP+ Sbjct 600 THSGITATVLLPTSILDSSRGPEIRTPRTGPVPTLDRTPPPTPPAPSWSQPVPTESAPPQ 659 Query 646 PRVFAIKPPCPEPAAADPTDVPAAIGPLPPVTL--------LPRRTPGSSGIADVPAQ-- 695 P ++ P + TD P+ P + LPRRTPG+SG+ V Sbjct 660 PATRSLA-DLPRRTPGNSTDRTETFAPITPQSTPTATAPSGLPRRTPGTSGVPAVSTSTP 718 Query 696 ---------------------------PMQQRRRELKTPWWEDRFQQEPKQPPAPEPRPA 728 P++ E +P Q P+ P P+P Sbjct 719 TTAAPATSVSSFAPLPDPEGTSTSTSLPVRTPSPEFTSP------AQGPEIPVGPQPSTT 772 Query 729 PPP----AKPAP----------------------------------PAGPVDDDVIYRRM 750 PPP + P P P+ P I+ RM Sbjct 773 PPPRHRLSAPTPTNTAAFFSSRTRDGLSARASARADGAGDGNSNGVPSAPTTMP-IFARM 831 Query 751 LSEMVGDP--HELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPG 808 +SE + DP A S W + D GW AA + + PV D GLP+R+ GARLVPG Sbjct 832 VSEWLVDPTAETSAASTGSSWTTDADQGWLAARTSFEMPVTKIADSGLPIRDRGARLVPG 891 Query 809 AAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHA 866 A GG G RHA+ +P V+ SS+ GV+ GR A Sbjct 892 AV----------------GGG---GTTQRHAS---NPADVQRGWSSYQSGVQRGRRRA 927 >gi|226364836|ref|YP_002782618.1| hypothetical protein ROP_54260 [Rhodococcus opacus B4] gi|226243325|dbj|BAH53673.1| hypothetical protein [Rhodococcus opacus B4] Length=883 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 312/936 (34%), Positives = 443/936 (48%), Gaps = 164/936 (17%) Query 32 RPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITK 91 R SW WP+RWK+ + ++PL VA L GLRVE ++ + + VA R +M+P + + Sbjct 17 RCRSWGIAGWPLRWKMAIVLIVPLTVATALGGLRVEQSLGAAADFTSVADRVKMLPHLVE 76 Query 92 YMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQALL 151 D +V+ + AQ+ T + R +V+ G L G A + Sbjct 77 LDG--DASVVMGTL------AQRTITPAMIDSLDR--SIEVVEQAGPGAG-LSEGAAADV 125 Query 152 DKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQ-MTMQ 210 L+D+ L +A A T+ + +EQ+ + LSR V A + + Sbjct 126 ATALSDARAL----SAQAKQGPTSTAAL-------TEQLASIRSALSRTVAAITEPIADP 174 Query 211 EILVTRG--ADLAEPQLRSAMVTLAGTEPSTLFGMSAAL-----GAGSPDTKNLQQQMVT 263 E++V G DL Q L E ++ SA L G ++ NL + T Sbjct 175 ELIVETGRLEDLWSAQ------KLISAEGLSVVATSAILAGESGGTLEAESINLLAHLRT 228 Query 264 RMAIMS---------DPAVALV---NNPELLHSIQITR-DIAEQVIT-------DTTEAV 303 A++ DP VA + N+ ++TR + A+QV+T D+ + Sbjct 229 ESALLDRVAQRYPPDDPTVAALRARNDDRTALVQKVTRRESADQVLTGLKYSLFDSIDDY 288 Query 304 TKSVQSQATDRRDA-----------AIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRD 352 + +V + + RDA A RD +V A + AI++ +VVAR+L+ P+R LR Sbjct 289 SGAVATASAGLRDAVAAKADVLRISAWRDMAVVTALLVAAILLAVVVARSLLTPLRRLRH 348 Query 353 GALKVAHTDLDGEIAAVRAGDEPIP---EPLAVYTTEEIGQVAHAVDELHTRALLLAGEE 409 GAL+VAH DL G + +++G E +P+ V+T EEIGQVA A+D++H +AL+LAGE+ Sbjct 349 GALQVAHADLPGAVERLKSGTEATTLQVDPIDVHTHEEIGQVARAIDDIHNQALMLAGEQ 408 Query 410 TRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSA 469 LRL +N +FET++RRSRSL+D QL +I+QLE E DP RLD+LFRLDHLA R+RRN Sbjct 409 AHLRLQMNNVFETLARRSRSLIDLQLEMIEQLEFEERDPKRLDNLFRLDHLATRMRRNGD 468 Query 470 NLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLA 529 NLL+LAG R P+ L + A++SEVE Y+RV + VP A+ GAA ++H+LA Sbjct 469 NLLILAGNSNRRGRPAPIQLGDAVRASISEVEHYQRVQVQPVPPVALTGAAGRDLVHVLA 528 Query 530 ELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPD 589 EL+DN+L +S P + V A +G +++ I D G+GM+ D R N R+ + +VTP Sbjct 529 ELLDNSLHFSPPDSAVTTTCARTIDGGIVIEIVDRGIGMSPTDLRELNDRIASTPQVTPG 588 Query 590 SARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPRVF 649 +ARHMGLFVV LA RH I V LR + + TG TA V++P VL +PRV Sbjct 589 TARHMGLFVVSELAKRHDITVTLRPTLDRPRNTGITASVHVPGDVLTSAV-----EPRVQ 643 Query 650 AIKPP------C------------PEPAAADPTDVPAAIGPLPPVT------------LL 679 I P C E AA + P + P P L Sbjct 644 PIPTPPQAAGRCDDHSSHGYAAVVSEAGAATAVEHPPSRTPTFPADRGARRPEAPAPGAL 703 Query 680 PRRTPGSSGIADVPAQPMQQRRRELKTPWWEDRFQQEPKQPPAPEPRPAPPPAK------ 733 PRR PG++GI P R EP P +P R P Sbjct 704 PRRRPGATGIVTSP------------------RPHAEPSPPGSPAVRDERAPRHRLDTVR 745 Query 734 -----------PAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAE 782 P P I+ + + DP + A W + D GWSAA Sbjct 746 TASFFQPRLLAQTPSEDPTTQTPIFASIAPLWLTDPAKTATDVSQRWVTRADTGWSAARR 805 Query 783 AADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAV 842 AA TD GLP R PG RLVPG G D + +AP V Sbjct 806 AALGSQAPVTDSGLPQRVPGQRLVPG-----GVDVDD--------------QAP---VRV 843 Query 843 RDPDAVRASISSHFGGVRTGRSHARE--SSQGPNQQ 876 R P+ +RA ++ H GVR GR+ R S P QQ Sbjct 844 RTPEMIRAHLTRHQSGVRAGRTGTRSVLGSLDPWQQ 879 >gi|289759521|ref|ZP_06518899.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289715085|gb|EFD79097.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length=194 Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 175/175 (100%), Positives = 175/175 (100%), Gaps = 0/175 (0%) Query 423 MSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRD 482 MSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRD Sbjct 1 MSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRD 60 Query 483 HREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPT 542 HREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPT Sbjct 61 HREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPT 120 Query 543 TPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLF 597 TPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLF Sbjct 121 TPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLF 175 >gi|54022634|ref|YP_116876.1| putative histidine kinase [Nocardia farcinica IFM 10152] gi|54014142|dbj|BAD55512.1| putative histidine kinase [Nocardia farcinica IFM 10152] Length=1268 Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 218/620 (36%), Positives = 338/620 (55%), Gaps = 30/620 (4%) Query 36 WSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSA 95 W+ NW +RWKV + +PL VA+ L R+ + + L VA E IPA+T +SA Sbjct 12 WALGNWDLRWKVTAVLAVPLAVAVGLGVSRITSEFTEANRLEGVAENIEAIPAVTG-LSA 70 Query 96 LDVAVLASSTGHDVEGAQKNFTARKYEL-QTRLADTDVIADVR------SGVNTLLNGGQ 148 V S + GA +L Q D A +R + + T++ + Sbjct 71 AAATVAGSQMVSLMPGASVVTDQDLSQLDQAITTAQDAGAKLRGHSKAEASLETMITEAR 130 Query 149 ALLDKVLA-----DSIGLRDRVTAYAPLLL--TAQNVIDASVRVDSEQIRTQVQGLSRAV 201 A+L + A D++G DR+ + ++ T V D ++ D+ ++R +RA Sbjct 131 AILARGKAAAQPTDALGGIDRIRNESVSIVESTVSQVSDPAM--DAAKLRLVDSLNTRAT 188 Query 202 GARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQM 261 E+L A + T + TE L ++ G +L+ + Sbjct 189 LVAELAAFNEVLHDFKAGV------QTFTTASETERQLLNVLAHRFPDGDSAIADLRAGV 242 Query 262 VTRMAIMSDPAVALVNNP--ELLHSIQITRDIAEQVITDTTEAVTKSVQSQATD-RRDAA 318 TR+++++ P P EL +S+ + D+ E+V+ T+ + ++ + A RDA Sbjct 243 DTRLSLINSPEAQAGRLPLGELKNSLTTSVDVYERVVAKATKDIDSAMDNLAGRANRDAW 302 Query 319 IRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEP--I 376 AV++ +A ++ V V AR+++ P+ LR AL+VA +DL E+A +R G P + Sbjct 303 TYTAVVIATILAALLLAVFV-ARSMIVPLHRLRLAALRVAESDLPHEVAQLRNGASPEDV 361 Query 377 P-EPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQL 435 P EP+ + +TEEIGQ+A A+D++H +AL LA ++ ++R VN+MFET++RRS+SLVD QL Sbjct 362 PLEPMPIRSTEEIGQLARAIDDIHGQALRLASDQAQMRSQVNDMFETLARRSKSLVDHQL 421 Query 436 SVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISA 495 S+I+ +E +E+DP L++LFRLDHLAAR+RRN NLL+LAG + R PV + V+ A Sbjct 422 SLIEAMEYDEKDPRLLENLFRLDHLAARMRRNGDNLLILAGTKQRRAKSAPVEIGDVLRA 481 Query 496 AVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEG 555 A+SEVEDY RV + P A+ AA + HL AEL+DNALR S P T V+ A + Sbjct 482 AISEVEDYERVKLGATPRGALKEPAASDLAHLFAELLDNALRASPPETDVKFTFAQAHDQ 541 Query 556 SVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGP 615 +L+ ++D G+GM A+ N +L E PD+ARHMGLFVVGRLA RHG+ V LR Sbjct 542 GLLIEVADRGIGMPPAEMAEINRKLEQTAEPGPDTARHMGLFVVGRLAERHGLTVRLRPT 601 Query 616 VTGEQGTGTTAEVYLPLAVL 635 + G T V++P+ ++ Sbjct 602 FDTARDPGVTVTVHVPVGLI 621 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/132 (37%), Positives = 66/132 (50%), Gaps = 23/132 (17%) Query 733 KPAPPAGPVDDDVIYRRMLSEMVGDPHELAHSPDLDWKSVWDHGWSAAAEAADKPVQSRT 792 +PA G D I+ M+S + DP+ ++S D GW AA A++ + +T Sbjct 1147 QPAVEPGSSMDSPIFAEMMSAWLADPNPDRSQVAASFESPGDEGWQAARRASEAQAEKKT 1206 Query 793 DYGLPVREPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASI 852 GLP R+PG RLVPGA GAA RAPR RDP+++R+S+ Sbjct 1207 AAGLPQRDPGGRLVPGAVS---------GAA---------DRAPR-----RDPESIRSSL 1243 Query 853 SSHFGGVRTGRS 864 S H GVR GR+ Sbjct 1244 SRHQKGVRDGRA 1255 >gi|84494306|ref|ZP_00993425.1| putative histidine kinase [Janibacter sp. HTCC2649] gi|84383799|gb|EAP99679.1| putative histidine kinase [Janibacter sp. HTCC2649] Length=928 Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 233/618 (38%), Positives = 336/618 (55%), Gaps = 45/618 (7%) Query 34 PSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGL-RLVAARAEMIPAITKY 92 P +S W +R K+ +P+++A GLRV +A + RL + A + PA+ Sbjct 16 PWYSIDEWSLRRKLALALAIPVLLAATFGGLRVTSATSEAQSFSRLESKVAVLQPAVRLV 75 Query 93 MSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNT--LLNGGQAL 150 S+ VAV ST + + L T + DVRS + T L + Sbjct 76 DSSSAVAVAGRSTD------EAAVNRARATLDT------AVKDVRSVMRTAGLSDEQVTA 123 Query 151 LDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRV-----------DSEQIRTQVQGLSR 199 LD+ +A + +R+ TA P A+ V D V SE T++ + Sbjct 124 LDQAVASAQTVRNS-TATVP----AETVADQFAEVVAPVTVVLGELTSETSDTRLTSVRD 178 Query 200 AVGARGQMTMQEILVTR-GADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQ 258 + + +T Q +L + GA + + L +A+ G E + + ++ LGA L Sbjct 179 VLAGQLALTKQRLLTAKTGATVDQIALGNAI----GEEATAIASLAGNLGANDTFVDALL 234 Query 259 QQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAA 318 R+A + P ++ + +A+Q+ V +++ +A++ R AA Sbjct 235 TGNELRLAAAPTVSQGTAALPREREAVSVYTTLAKQI----NGQVVDTMREKASEGRRAA 290 Query 319 IRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIP- 377 IRDAV + + AI + L VAR L+ P+ +R GAL VAH L + +RAG+EP Sbjct 291 IRDAVATIGLLVAAIALALAVARLLLDPITRVRLGALDVAHERLPTALRQIRAGEEPAAI 350 Query 378 EPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSV 437 EPL V+T EE+GQ+A AVD LH A+ LA ++ RLR V+ MFET+SRRS SL++QQL + Sbjct 351 EPLPVHTGEEVGQLARAVDVLHAEAIFLATQQARLREQVSAMFETLSRRSTSLINQQLGL 410 Query 438 IDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAV 497 I+ LER+E+DP RL++LFRLDHLAAR+RRN +LLVLAGA + +PL V+ AAV Sbjct 411 IENLERDEDDPRRLENLFRLDHLAARIRRNGESLLVLAGAAPRSGAGQDLPLGDVVRAAV 470 Query 498 SEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSV 557 SEV+DY+RV +A V D + AA +IHL AELIDNAL YS P + V VA+ G +G Sbjct 471 SEVQDYQRVRLA-VSDLVIQAGAAPNLIHLFAELIDNALSYSPPDSTVTVASVRGVDGGT 529 Query 558 LLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVT 617 L+ +SD GLGMT AN L GGEVT ++AR MGL+VVG+LA RH + V +R Sbjct 530 LVEVSDDGLGMTPEAVASANESLVTGGEVTTETARRMGLYVVGQLAIRHDVTVRIR---P 586 Query 618 GEQGTGTTAEVYLPLAVL 635 + TGT V+LP A+L Sbjct 587 NPESTGTIVSVFLPAALL 604 Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/138 (33%), Positives = 64/138 (47%), Gaps = 29/138 (21%) Query 740 PVDDDVIYRRMLSEMVGDPHELAHSPDLDWKS-VWDHGWSAAAEAADKPVQSRTDYGLPV 798 PV + I+R++ + + D + DL W S D GW AA A R+ GLP+ Sbjct 799 PVAETPIFRQLQTSWLSD----TDNADLPWASDEIDQGWQAAERAVSAESAGRSRSGLPM 854 Query 799 REPGARLVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGG 858 R PG+ LVPG V +G ++A RDP+A+RA ++ H G Sbjct 855 RRPGSTLVPG-QVGQGA----------------------NSAVARDPEAIRAHLNRHLAG 891 Query 859 VRTGR-SHARESSQGPNQ 875 VR GR S +QG N+ Sbjct 892 VRRGRASSGTGDAQGTNE 909 >gi|54023642|ref|YP_117884.1| putative histidine kinase [Nocardia farcinica IFM 10152] gi|54015150|dbj|BAD56520.1| putative histidine kinase [Nocardia farcinica IFM 10152] Length=713 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 227/602 (38%), Positives = 325/602 (54%), Gaps = 19/602 (3%) Query 41 WPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAV 100 W +RWKV + LP+ VA VLA R++ +A + A A+++PA+ SA+D Sbjct 23 WRLRWKVAAVLALPVCVAAVLAATRIQHELAQAAEFGAAAETAQVVPAVVNLGSAVDTLA 82 Query 101 LASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADS-- 158 L D A EL RL D D R L G L D+++ + Sbjct 83 LTRLGATDPSAAAHEVDTATDEL-ARLLDRSA-RDHREFDEPLAAVGM-LRDRLMIATPP 139 Query 159 IGLRDRVTAYAPLLLTAQNVIDASVRVD-SEQIRTQVQGLSRAVGARGQMTMQEILVTRG 217 L RV A LL+A + +V VD +E I + + A AR +T Q IL Sbjct 140 ADLATRVEAIHVALLSA---VTRAVAVDGAENIDRFTEQFTDAWDARRALTTQRILAETV 196 Query 218 ADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIM-SDPAVALV 276 D A ++R + G E + + ++A A Q+ M + +DP V Sbjct 197 GDDAAARVR--LTFPLGAEAAAIERLAADSAAADVALVADSIQVRQNMFLGDADP----V 250 Query 277 NNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVV 336 P S+ + ++ + S +QA R AA+RD V+ A+ A+ Sbjct 251 RAPHYTESVTAAARHYDTLLAGIATELVDSADAQAAAARAAALRDTAWVIGALLAALTFA 310 Query 337 LVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPE---PLAVYTTEEIGQVAH 393 L+VA++L+ P+R LR GAL A DL + +RAG P E LA+ T EE+ ++A Sbjct 311 LLVAQSLIAPLRRLRLGALHTARRDLPAALERIRAGAAPEAESNTKLALGTGEELDELAQ 370 Query 394 AVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDS 453 A+D+LH +A+ LAGE+ R VN+MFET+SRR+R+L+DQQL +I++LE +E DP+RL S Sbjct 371 AIDQLHGQAIRLAGEQAATRRQVNDMFETLSRRNRALIDQQLGLIEELEHDEADPSRLRS 430 Query 454 LFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPD 513 LFRLDHL R+RRN NLLVLAG ++ R+ PV L+ V+ AA+SEVED+ RV + PD Sbjct 431 LFRLDHLVTRMRRNGNNLLVLAGTRVRRNRAVPVDLAEVLQAAMSEVEDFHRVRLLSGPD 490 Query 514 CAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADR 573 + GA A ++HLLAEL+DNALR+S P V ++ A G +++ I D+G+GM+D D Sbjct 491 VEIAGAVAPDLVHLLAELLDNALRFSPPDAAVDLSVAASISGGIVIEIVDTGIGMSDEDM 550 Query 574 RMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLA 633 AN + AGG ++ ++AR MGLFVVGRLA RHG+ V LR G TA V +P Sbjct 551 EHANRTVAAGGAISVETARRMGLFVVGRLAERHGVTVALRRTSPETVRGGVTAAVGVPAQ 610 Query 634 VL 635 L Sbjct 611 AL 612 >gi|256374611|ref|YP_003098271.1| sensor with HAMP domain [Actinosynnema mirum DSM 43827] gi|255918914|gb|ACU34425.1| putative sensor with HAMP domain [Actinosynnema mirum DSM 43827] Length=1092 Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 216/676 (32%), Positives = 339/676 (51%), Gaps = 62/676 (9%) Query 32 RPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITK 91 R SW +NW + K+ + L+P V A+ L GLRV++ +A+ + +A + ++ A+ Sbjct 31 RTASWRLQNWRLPTKLGAVLLIPTVAALALGGLRVQSDLANATQFSRLANQVQLETAVAD 90 Query 92 YMSAL----DVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGG 147 + L D++ ++ +E A +L R++D V + + +++ Sbjct 91 LVHQLQRERDLSTWYVASSKQIES-----VALDRQL-VRVSDA-----VETLKSKIIDLS 139 Query 148 QALLDKVLADSIGLRDRVTAYAPL---LLTAQNVIDASVRVDSEQIRTQVQGLSRAVGAR 204 L + + G +++T L + Q DA +RV SE + + + +A+G Sbjct 140 GDLAPETVERFRGTAEQLTRLNSLRSAVRETQYPSDAVLRVYSESVESLLDLGEQAIGGI 199 Query 205 GQMTMQEILVTRGA----DLAEPQLRSAMV------TLAGTEPSTLFGMSAALGAG---- 250 + + + A E Q R + + A + L ++A L A Sbjct 200 DDPELARLHLATNAMARIKEQESQKRGILFDVFQRGSFAANQERALLAVNAELDAARNDF 259 Query 251 ----SPDTKNLQQQMVTRMAI-----MSDPAVALVNNPELLHSIQ---------ITRDIA 292 +PD + VT + I M + A+ L I +T + Sbjct 260 RKSATPDQAKIYDDTVTGLIIDTANNMQETALNLAGTTSGFGDISPKGWDVSSTLTVNKT 319 Query 293 EQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRD 352 QV E + + + + R AA D+ +VL A+ A+V+ L VAR+++ P+R+LR Sbjct 320 RQVEVMLIEQLQRLSDERTGEARAAAFYDSGVVLGALLMALVMALFVARSILNPLRLLRR 379 Query 353 GALKVAHTDLDGEIAAVRAGDEPIPE--------PLAVYTTEEIGQVAHAVDELHTRALL 404 AL VA L + + A +P P+ P+ + T EE+GQVA A D +H A+ Sbjct 380 TALDVADKGLPEAVEKILA--DPNPQEAAKTAIAPVPITTREEVGQVARAFDAVHGEAVR 437 Query 405 LAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARL 464 LA E+ LR VN MF +SRRS++LV++QL++ID+LE++E+DP +L SLF LDHLA R+ Sbjct 438 LAAEQAMLRDNVNAMFVNLSRRSQALVERQLNLIDRLEQDEQDPDQLASLFELDHLATRM 497 Query 465 RRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGV 524 RRNS NLL+L+G ++R PVP++ V+ AAVSEVE Y RV + + P+ V G A + Sbjct 498 RRNSENLLMLSGTDLSRRLTRPVPVAEVLGAAVSEVEQYARVQVGQTPELTVQGRAVNDL 557 Query 525 IHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGG 584 +HL+AEL+DNA +S P T V V A +G + + I D G+GM+D D R AN RL Sbjct 558 VHLIAELLDNATAFSDPVTKVTVRTARTRKGELAIEIQDRGVGMSDQDLRDANERLANPP 617 Query 585 EVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPP 644 +V +R MGL+VV RLA RH ++V LRG E GTTA V +P A++ P Sbjct 618 DVDVAVSRRMGLYVVARLAKRHDVKVRLRGNEDIE--GGTTALVTVPEALVTSAGQTAHP 675 Query 645 KPRVFAIKPPCPEPAA 660 P P P+A Sbjct 676 MGADLIGSPSAPAPSA 691 Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust. Identities = 50/175 (29%), Positives = 72/175 (42%), Gaps = 38/175 (21%) Query 714 QQEPKQPPAP----EPRPAPPPAKPAP-PAGPVDD-----------DVIYRRMLSEMVGD 757 Q EP++ AP +PRP A+ A P+ +++ ++ R + + V + Sbjct 916 QPEPQREEAPLPTRKPRPVSEQAQEAAAPSSAIENGLPKRQPGSQSNMSKRTLETSRVSE 975 Query 758 PHEL------AHSPDLDWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAAV 811 P + SP W+S D GW AA + T GLP R+P A+LVPG+A Sbjct 976 PEAVQAEPAAKASPASVWQSPADEGWQAAQSLLSSTPDATTQAGLPKRKPKAQLVPGSAA 1035 Query 812 PEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHA 866 P GA + R D +R +SS GVR GR HA Sbjct 1036 PLA------GATQQPQ---------QPPLPPRSADVIRGRMSSLQQGVRRGR-HA 1074 >gi|256379423|ref|YP_003103083.1| sensor with HAMP domain [Actinosynnema mirum DSM 43827] gi|255923726|gb|ACU39237.1| putative sensor with HAMP domain [Actinosynnema mirum DSM 43827] Length=1060 Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 247/716 (35%), Positives = 350/716 (49%), Gaps = 70/716 (9%) Query 36 WSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSA 95 W RNW +R K+ + L+P + + LAGLR+ + V ++ A Sbjct 47 WRLRNWKLRSKLVVVLLVPAMSTLALAGLRLTTQLDDVELYGKVQRELQLSAQAAAVGDA 106 Query 96 LDVAVLASSTGHDVEGAQKN--FTARKYELQTRLADTDV-----------IADVRSGVNT 142 L + A+ G+ G + N TAR EL TR D D+ V T Sbjct 107 LQLERDAA-VGYVAAGRKTNPDATARVGELNTRSGKVDAEVMRLRDVGAATGDIDDTVRT 165 Query 143 L-------LNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQ 195 L+G +L + VL +AY LL T V A+ S + T + Sbjct 166 AYEKSLQSLDGLNSLRNTVLESQYPDASVASAYGQLLGTLLQVHRATSSSLSNEHLTPLV 225 Query 196 GLSRAV-GARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDT 254 G + A+ A+ Q+ Q ++ A+ +E A L G + ++ S D Sbjct 226 GANLALYAAKEQLAQQNSILISAANRSEFGPNQANA-LRGAQSKLDSAITDFTNVASQDN 284 Query 255 KNLQQQMVTRMAIMSDP---AVALVNNPELLHSIQITRDIAEQVITDTT---EAVTKSVQ 308 + Q V+ A+ + +ALV N + +I + A +V DT V+ ++ Sbjct 285 RQNYQDTVSGTAVDARNRLVTLALVQN-DNGKAISFNENDALRVGEDTAALLRQVSLDIE 343 Query 309 SQA-------TDRRDA-AIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHT 360 QA TD +A A RD LV AA+ A ++ VVA +++ P+RVLR AL VA Sbjct 344 DQAQREAVRLTDEANALAWRDGALVAAALIIAFALMAVVATSMLTPLRVLRRTALDVARN 403 Query 361 DLDGEIAAVRAGDEP--------IPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRL 412 L I +R +P +P P ++TTEE+GQVA A D + A+ LA E+ L Sbjct 404 RLPDAIKRIRTHRDPERAAEESLVPVP--IHTTEEVGQVARAFDAVQREAIRLAVEQVAL 461 Query 413 RLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLL 472 R VN+MF +SRRS++LV++Q++VID+LE++E+DP +L SLF LDHLA ++RRNS NLL Sbjct 462 RANVNDMFINLSRRSQALVERQITVIDRLEQDEQDPDQLASLFELDHLATQMRRNSENLL 521 Query 473 VLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELI 532 VL+G +TR PVP++ V+ AAVSEVE Y RV IA PD V G + HL+AEL+ Sbjct 522 VLSGTTVTRRVTRPVPITEVLGAAVSEVEKYARVHIAPAPDLRVQGRVVNDLAHLIAELL 581 Query 533 DNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSAR 592 DNA +S P+T V V A G V +RI D G+GM + D AN++L EV AR Sbjct 582 DNATAFSKPSTKVTVRAIETRRGEVSIRIHDRGVGMQEQDVVEANLKLSEPPEVDVSVAR 641 Query 593 HMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVL------EGTAPAQP--- 643 MGL+VVG+LA RH I V LR E G TA+V LP +L +G Q Sbjct 642 EMGLYVVGQLAKRHEIHVSLRNNDDIE--GGVTAQVLLPAGLLHRGPDPQGGGGRQSLPL 699 Query 644 PKPRVFAI-KPPCPEPAAA---------DPTDVPAAIGPLPPVTLLPRRTPGSSGI 689 +P V A+ PP E A P +P+A G P R PG +G+ Sbjct 700 GRPGVLALADPPEVEETGAVALSGLPKWSPDQMPSAFGEAAPEHAF-RGRPGQNGV 754 Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust. Identities = 30/106 (29%), Positives = 47/106 (45%), Gaps = 2/106 (1%) Query 768 DWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASN 827 +W S D WS A++ V T GLP R P ARL+PG ++ G A + + Sbjct 943 NWGSS-DDNWSTASKVLKSAVDESTTAGLPKRVPKARLMPG-SLSTGSSTTATQATVRAE 1000 Query 828 GGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHARESSQGP 873 G P A R D +R +++ G++ GR + ++ P Sbjct 1001 GRTGPSGGVATAQGPRSADRLRQRFATYQRGLQMGRDNNQDDDSLP 1046 >gi|111024847|ref|YP_707267.1| sensor kinase [Rhodococcus jostii RHA1] gi|110823826|gb|ABG99109.1| probable sensor kinase [Rhodococcus jostii RHA1] Length=689 Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 228/690 (34%), Positives = 357/690 (52%), Gaps = 80/690 (11%) Query 36 WSPRN---WPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKY 92 WS R WP+RWK+ + +PL VA L LRV+ ++ + + V+ RA+++P + + Sbjct 18 WSARGVAGWPLRWKMAVVLTVPLTVAAGLGFLRVQQSLTAAADFTTVSERAQILPLLVEL 77 Query 93 -------MSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLN 145 M L + +++S N A +++ + S V T L+ Sbjct 78 DGHAAVVMGTLALRTISTSM-------SDNLDASIVDVENANTANTLDEGAASDVATALS 130 Query 146 GGQALLDKVL---ADSIGLRDRVTAYAPLLLTAQNVIDASV---RVDSEQIRTQVQGL-- 197 G +AL + + L ++ + L +A I A + V E +R ++GL Sbjct 131 GARALSAQAKRGPTSTEALTAQLASIRSALSSAVGAITAPIADPEVVVETVR--LEGLWA 188 Query 198 -SRAVGARGQMTMQEILVTRGADLAEPQLRSA-MVTLAGTEPSTLFGMSAALGAGSPDTK 255 + V A+G + + G A + S ++ TE + L + G P Sbjct 189 AQKLVSAQGLSVVASTAILTGESGANLEAESVNLLANLRTESALLDQVEQRYPPGDPTMT 248 Query 256 NLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQ------- 308 L+ + R A++ PE+ H R+ A++ +TD ++ SV Sbjct 249 TLRNGVNDRTALL----------PEVAH-----RESADRALTDLKNSLIASVDDYSNAIA 293 Query 309 SQATDRRDAAI-----------RDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKV 357 + + D +DA + RD +V A + AI++ +VVAR+L+ P+R LR GAL+V Sbjct 294 TASADLKDAVVAKSAALRTQAWRDTGVVTALLLAAILLAVVVARSLLQPLRRLRRGALRV 353 Query 358 AHTDLDGEIAAVRAGDEPIP---EPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRL 414 AH DL + +++G + +P+ V+T EEIGQ+A A+D++H++ALLLA E+ +LRL Sbjct 354 AHADLPDAVGRLKSGADASTLEFDPIDVHTHEEIGQLARAIDDIHSQALLLASEQAQLRL 413 Query 415 LVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVL 474 +N +FET++RRSRSL+D QL +I+QLE E DP RLD+LFRLDHLA R+RRN NLL+L Sbjct 414 QMNNVFETLARRSRSLIDLQLEMIEQLEFEERDPKRLDNLFRLDHLATRMRRNGDNLLIL 473 Query 475 AGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDN 534 AG R P+ L + AA+SEVEDY+RV + +P + GAA ++H+LAEL+DN Sbjct 474 AGNDNRRGRPAPILLGDAMRAAISEVEDYQRVRVCAMPPVTLTGAAGRDLVHVLAELLDN 533 Query 535 ALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHM 594 +L +S P + V A +G V++ I+D G+GM +D N R+ + EVTPD+ARHM Sbjct 534 SLHFSPPDSAVTTTCARTIDGGVVIEIADRGIGMAPSDLHELNDRVASTPEVTPDTARHM 593 Query 595 GLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVL----EGTAPAQPPKPRVFA 650 GLFVV L+ RH I + LR + + G T V++ VL EG + +P+ Sbjct 594 GLFVVSELSKRHNITITLRPTLDLPRNAGVTVSVHISGDVLTSEHEGVRSSSGGRPQTAG 653 Query 651 IKPPCPEPAAADPTDVPAAIGPLPPVTLLP 680 P +I P+P T+LP Sbjct 654 HYAALT---------TPGSIAPIP--TILP 672 >gi|337768358|emb|CCB77071.1| Membrane protein [Streptomyces cattleya NRRL 8057] Length=1166 Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 225/675 (34%), Positives = 338/675 (51%), Gaps = 70/675 (10%) Query 13 AAASDISAPAQPARGKPQQRPPS-WSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMA 71 AA SD+ PA G PQ + S + RNW +R ++ ++ LP+V A L GLR++ + Sbjct 56 AAGSDVEPPAT---GAPQGKHASKLAMRNWSIRTRLVSLVTLPVVAATALGGLRIQETLN 112 Query 72 STSGLRLVAARAEMIPAITKYMSAL-----------------DVAVLASSTGHDVEGAQK 114 S + L + EM TK AL D V+AS D E + Sbjct 113 SVTQLDHMKLLTEMTGHATKLADALQDERDSSAGPLTARNPRDDRVVASRQATDRE--IQ 170 Query 115 NFTARKYELQTRLADTDVIADVRSGVNTLLNGGQALL---DKVLADSIGLRDRVTAYA-- 169 F ++ T +D+ ++ VRS + + Q+L ++ + V+ Y Sbjct 171 GFRNATDDIDT--SDSALVG-VRSTILDITRQLQSLKQIRSSAYSNDQYISQTVSGYNQL 227 Query 170 --PLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRG-ADLAEPQLR 226 LL +Q++ A+ +S+ IR+ + L+ A+ +MQ +++ A+ A PQL Sbjct 228 IDSLLSLSQDMAQAT--SNSDMIRS-TRALAAFTSAKEYESMQRAVISAALANPAGPQLS 284 Query 227 SAMVTLAGT----EPSTLFGMSAALGAGSP------DTKNLQQQMVTRMAIMSDPAVALV 276 ++ A T E S + S G GS D N+ ++T+ D + Sbjct 285 NSDRLFAQTASDSENSEIKRFSEIYGTGSAELLKALDGGNV---VITQADQFRDRVLKSQ 341 Query 277 NNPELLHSIQITRDIAEQVITDTTE------AVTKSVQSQATDRRDAAIRDAV----LVL 326 N + + D +Q T E + +Q +A R A +DA+ L+L Sbjct 342 NG--ITQEKKSYLDWYDQADTKMQEMSRIEAELLDQMQQRALALRAGAQQDALINGALIL 399 Query 327 AAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGD----EPIPEPLAV 382 + ++V VVAR+++ +R L+D A VA+ L + + D + E + + Sbjct 400 LVLGISLVGAFVVARSMIRSLRRLQDTAKDVANKRLPDLVRQLSETDPQDVDTSVESIGI 459 Query 383 YTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLE 442 T +EIGQVA A D++H A+ LA E+ LR VN MF +SRRS+ L+ +QLS+I +LE Sbjct 460 NTGDEIGQVARAFDDVHREAVRLAAEQALLRGNVNAMFTNLSRRSQGLIQRQLSLISELE 519 Query 443 RNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVED 502 E DP +L +LF+LDHLA R+RRN NLLVLAG + R PVPL V+ AA SEVE Sbjct 520 SREADPDQLSNLFKLDHLATRMRRNGENLLVLAGEEPGRRWTRPVPLVDVLRAAASEVEQ 579 Query 503 YRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRIS 562 Y R+++ VP V G ++HLLAEL++NA +SSP T VRV +G VL+ I Sbjct 580 YERIELTTVPPTEVAGRVVNDLVHLLAELLENATSFSSPQTKVRVTGHALPDGRVLVEIH 639 Query 563 DSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGT 622 D+G+G++ D N RL V +R MGLFVVGRL+ RHGIR+ LR +G Sbjct 640 DTGIGLSPEDLADINERLANPPTVDVSVSRRMGLFVVGRLSLRHGIRIQLRPSDSG---- 695 Query 623 GTTAEVYLPLAVLEG 637 GTTA V LP+ + +G Sbjct 696 GTTALVMLPVELTQG 710 >gi|296268958|ref|YP_003651590.1| histidine kinase [Thermobispora bispora DSM 43833] gi|296091745|gb|ADG87697.1| histidine kinase [Thermobispora bispora DSM 43833] Length=950 Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 298/971 (31%), Positives = 425/971 (44%), Gaps = 180/971 (18%) Query 43 VRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDV---- 98 +R ++ + L+P V A++L GLRV ++ + S + V A ++ ++ L Sbjct 1 MRTRLVALILVPTVAALLLGGLRVFTSLTTASEYQRVNDLARLVQSVAVLTHELQTERDR 60 Query 99 ---------------AVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTL 143 AV+ +T + A+ A D I V S ++TL Sbjct 61 AAWNAALGRPEKATAAVVTQTTAVNKAAAEVRKIAASVRADAEPRAADRIDHVISRLDTL 120 Query 144 LNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDA-SVRVDSEQIRTQVQGLSRAVG 202 ++L + ++ S+ +T Y +L + D SV E++ L Sbjct 121 ----ESLRKQAVSGSLLPGAVMTQYTLILDELLELHDELSVIAGDERLAAMSTSLGALAT 176 Query 203 ARGQMTMQEILVTR---GADLAEPQLRSAMVTLAGTEPS-TLFGMSAAL----------- 247 A+ M++Q L+T + Q R + LA E + + F A+ Sbjct 177 AKEAMSVQRGLLTTVLPAGRFDQEQYRQFLGALAIEERALSTFRKHASREERAEYDRTVS 236 Query 248 GAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQIT-RDIAEQVITDTTE----- 301 GAG D L+ ++ R+A LH + T RD A + T+ Sbjct 237 GAGVEDAAFLRALVLDRVAAGFS-----------LHQLDRTARDDARRWFDAMTQPINSI 285 Query 302 ----------AVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLR 351 V +S QA + R A I A + L IA V+ ++LV P+R LR Sbjct 286 RTVEGKLAASIVDRSAALQADEERRAMIASAAIALLLIAVLFFTTGVI-QSLVRPLRRLR 344 Query 352 DGALKVAHTDLDGEIAAVR-AGD-EPIPE--PLAVYTTEEIGQVAHAVDELHTRALLLAG 407 AL++A L + +R AGD IPE P+ + T +EIG+VA A DE+H A+ LAG Sbjct 345 SEALEIAGHRLPETVQRLREAGDAAEIPEIQPIGIGTRDEIGEVARAFDEVHREAVRLAG 404 Query 408 EETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRN 467 +E RLR VN MF +SRR+++LV++QLS+I+ LE+ E+D RL LF+LDHLA R+RRN Sbjct 405 DEARLRSNVNAMFVNLSRRTQTLVERQLSLIENLEQGEQDEDRLKDLFKLDHLATRMRRN 464 Query 468 SANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHL 527 S NLLVLAG + R PVP+ V+ A++SEVE Y RVD P A+VG A V+HL Sbjct 465 SENLLVLAGQEPARRWGRPVPIVDVVRASLSEVEGYERVDFKVQPGVALVGQAVNDVVHL 524 Query 528 LAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVT 587 LAELI+NAL +S + V V+++ G +L+ +SD+G+GMT + AN RL V Sbjct 525 LAELIENALSFSPRDSKVTVSSSRIDGGGLLISVSDTGIGMTPEEIEQANHRLANPPVVD 584 Query 588 PDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQPPKPR 647 +R MGLFVVGRLA RHGIRV LR +G G TA V LP A+L + PA Sbjct 585 VSISRRMGLFVVGRLALRHGIRVQLRRQDSG----GLTAMVLLPEALLVRSEPA------ 634 Query 648 VFAIKPPCPEPAAADPTDVPAAIGPLPPVTLL--PRRTPG------SSGIADV------P 693 FA P + A P V A P +L P+RTP +G AD Sbjct 635 -FAHLPGLSQTGATGPMPVGADAPGSGPTSLFEPPQRTPVLGAAVPETGAADTGRFERGT 693 Query 694 AQPMQQRRRELKTPWWEDRFQQEPK------------------------QPPAPEPRPA- 728 +P Q P+ D F P +PP P P Sbjct 694 FEPFQPSDAVAADPFARDLFGSPPAASDRSFDTETRPFETASFARGQFGEPPIDTPWPGH 753 Query 729 -PPPAKPA---------------PPAGPVDDDVIYRR---MLSEMVGDPHE---LAHSPD 766 PPP + P AG +D R S + D E + + + Sbjct 754 VPPPGSTSWPEPIGPETGGWPGDPRAGSFGEDDTGRLPTVRTSPLEADEEEYLPIFAAVE 813 Query 767 LDWKSVWD--------------HGWSA-------AAEAADKP-VQSRTDYGLPVREPGAR 804 DW D GWS+ AA+AA +P + T GLP R P A Sbjct 814 SDWFKKADPSAGKDSEGESGDTKGWSSPADAGWEAAKAASEPTLGGTTAAGLPKRVPKAN 873 Query 805 LVPGAAVPEGPDREHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRS 864 LVPG+ A+ A + + P+ VR+ +SS GVR GR+ Sbjct 874 LVPGS---------------AATSTPAEPAASAAPSPMLSPERVRSRLSSFQQGVRQGRA 918 Query 865 HARESSQGPNQ 875 AR + G Q Sbjct 919 VARGEASGEEQ 929 >gi|345009558|ref|YP_004811912.1| integral membrane sensor signal transduction histidine kinase [Streptomyces violaceusniger Tu 4113] gi|344035907|gb|AEM81632.1| integral membrane sensor signal transduction histidine kinase [Streptomyces violaceusniger Tu 4113] Length=1321 Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 214/678 (32%), Positives = 333/678 (50%), Gaps = 66/678 (9%) Query 9 IPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEA 68 I + D PA+P P + RNW + ++ ++ LP+V A L LR+E Sbjct 55 ISAPSGGGDAEQPAKPKTSGPSGPGSRMALRNWRISTRLVSLLTLPVVAATTLGALRIEG 114 Query 69 AMASTSGLRLVAARAEMIPAITKYMSALDVAVLASSTGHDVEGAQKNFTARKYELQTRLA 128 ++ + L + +M T+ SAL S+ +G K+ + TR Sbjct 115 SLDNIQQLDQMKLLTKMTQQATQLASALQEERDKSAGPLAGKGNDKDDRV----VSTRED 170 Query 129 DTDVIADVRSGVNTLLNGGQAL---------LDKVLADSIGLRDRVTAY----------- 168 I R + + G Q+L +D+ L +RD TAY Sbjct 171 TNRAITAFREATHQIDPGDQSLAGVQSTLVNIDRQLGKINEVRD--TAYDNSQYYSLTVQ 228 Query 169 ------APLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVT------R 216 LLL +Q++ A+ + + + L+ A+ ++Q L++ + Sbjct 229 NYNELINSLLLLSQDMAQAT---SNRAMINNTRALATFSSAKEYASIQRALISAALADPK 285 Query 217 GADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVA-- 274 GAD + R A + + + G + G ++++L + +R I + A Sbjct 286 GADFSANDRRFARTAV--DKENEALGRFKQIRQG--NSEDLLDPLDSRPDIKAATMYADR 341 Query 275 LVNNPELLHSIQITR-------DIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVL--- 324 V +PE L + + T I + + E + +Q +A + RD+A +DA+L Sbjct 342 AVRDPEGLKAEKRTDLDWYDQDSIKIEEMGKIEETLLSEMQQKARELRDSAQQDAILNGA 401 Query 325 -VLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGD----EPIPEP 379 +L + ++V VVAR++V +R L+D A V+ L + + D + E Sbjct 402 LILLVLGVSLVGAFVVARSMVRSLRRLQDTAQDVSQKRLPELVKQLSESDPQDVDTSVES 461 Query 380 LAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVID 439 + V++ +EIG+VA A D++H A+ LA E+ LR VN MF +SRRS+ L+ +QLS+I Sbjct 462 VGVHSRDEIGKVAAAFDDVHREAVRLAAEQALLRGNVNAMFTNLSRRSQGLIQRQLSLIS 521 Query 440 QLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSE 499 +LE E DP +L SLF+LDHLA R+RRN NLLVLAG + R PVPL V+ AA SE Sbjct 522 ELESREADPDQLSSLFKLDHLATRMRRNGENLLVLAGEEPGRRWTRPVPLVDVLRAAASE 581 Query 500 VEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLL 559 VE Y R++++ VP V G ++HLLAEL++NA +SSP T V+V +G VL+ Sbjct 582 VEQYERIELSSVPATEVAGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLV 641 Query 560 RISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGE 619 I D+G+G++ D N RL + V +R MGLFVVGRL+ RHGIR+ LR +G Sbjct 642 EIHDTGIGLSPEDLAAINERLASPPTVDVSVSRRMGLFVVGRLSLRHGIRIQLRPSDSG- 700 Query 620 QGTGTTAEVYLPLAVLEG 637 GTTA V LP+ V +G Sbjct 701 ---GTTALVMLPVDVAQG 715 >gi|297559789|ref|YP_003678763.1| integral membrane sensor signal transduction histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844237|gb|ADH66257.1| integral membrane sensor signal transduction histidine kinase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length=1119 Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 228/684 (34%), Positives = 337/684 (50%), Gaps = 65/684 (9%) Query 3 MFARPTIPVAAAASDISAPAQPARGKPQQRPPSWSPRNWPVRWKVFTIALLPLVVAMVLA 62 M R T A A S+ +A A+ A P++R W PRNW VR ++ + ++P VA+ L Sbjct 1 MSTRATKNGAGAQSE-AAQAEHADATPKRRADWWRPRNWRVRSRLVALIVIPTAVALALG 59 Query 63 GLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDVAVLASST--GHDVEGAQKNFTARK 120 GLRV A ST + RAE+ I + + L AS+ + + A+++ R+ Sbjct 60 GLRVYEAAVSTVTHAHIQDRAEVGVLIVELANQLGHERSASAVYISDNADPARRSDELRQ 119 Query 121 Y---------ELQTRLA---------DTDVIADVRSGVNTLLNGGQALLDKVLADSIGLR 162 +LQ L DT+ + S + + L+ AL +V I + Sbjct 120 RMEEERDASRDLQQTLTARLDDMGEVDTETASSRLSSMRSQLSTLDALRTEVDETRITVL 179 Query 163 DRVTAYAPLLLT----AQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGA 218 VT Y + + Q + D + D +R V+ L+ AR Q++ + L+ G Sbjct 180 PVVTKYRTITRSLAEFNQTMADGTGDTD---LRESVRTLTALSTARDQLSYETALM--GH 234 Query 219 DLAEPQLRSAMVTLAGTEPSTLFG-MSAALGAGSPDTKNLQQQMVT----------RMAI 267 LA + + + + +S + A S + + + T RM + Sbjct 235 SLARNTMTGGIAEAIDSARARYESEISNFVQAASEEQRQIFDDNFTGLEVSQVSTMRMRV 294 Query 268 M-----SDPAVALVNN--PELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIR 320 M D + N PE I D+A + E + + + + A RD A+ Sbjct 295 MYRADRGDDLTGVTANDGPEDYREIA---DVALGRLQTVEEGIAEGIAADANTLRDEAMG 351 Query 321 DAVLVLAAIATAIVVVLV----VARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPI 376 A++ L +A ++ V V V R+LV P+R L DGA +VA DL I ++ + Sbjct 352 RALIDLFVVAGVLLAVFVLTSLVVRSLVRPLRALEDGARRVAERDLPDAINRMQEAG-TV 410 Query 377 PE-----PLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLV 431 PE P+ V T +EIG+VA A D++H AL LA +E LR VN MF +SRRS++LV Sbjct 411 PENVKVTPIEVDTHDEIGEVARAFDDVHRVALTLASDEAALRSNVNAMFVNLSRRSQTLV 470 Query 432 DQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLST 491 ++QL +ID LE++E+D RL LF+LDHLA R+RRN+ NLLVL+G TR +PVPL Sbjct 471 ERQLRLIDGLEQSEQDADRLSDLFQLDHLATRMRRNNENLLVLSGQDNTRKWAQPVPLVD 530 Query 492 VISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAI 551 V+ AVSEVE Y RV++ +V+G VIHL+AEL++NA +S T V V+A Sbjct 531 VLRGAVSEVEQYERVNVRAPSHISVLGRPVNDVIHLVAELVENATSFSPHDTEVLVSAKT 590 Query 552 GSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVG 611 G V + ++DSG+GM D N RL A + +R MGLFVV RLA RHG+R+ Sbjct 591 LDNGGVQVDVTDSGIGMAPEDMAAINARLAAPPVIDVAVSRRMGLFVVSRLAHRHGVRLR 650 Query 612 LRGPVTGEQGTGTTAEVYLPLAVL 635 L G GTTA V P +L Sbjct 651 LEEA----HGGGTTAHVIFPPDLL 670 Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/103 (34%), Positives = 38/103 (37%), Gaps = 21/103 (20%) Query 768 DWKSVWDHGWSAAAEAADKPVQSRTDYGLPVREPGARLVPGAAVPEGPDREHPGAALASN 827 +W S D GW AA AA+ T GLP R P A LVPG A ++ P Sbjct 1035 EWTSEADRGWKAARTAAEPKADGLTPSGLPKRVPKANLVPGTAPKPENFKQMP------- 1087 Query 828 GGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHARESS 870 R D VR S GVR GR E S Sbjct 1088 --------------TRSADRVRNRFSGFQKGVREGRDRLGEGS 1116 >gi|21223899|ref|NP_629678.1| membrane protein [Streptomyces coelicolor A3(2)] gi|3355692|emb|CAA19992.1| putative membrane protein SC1C2.25c [Streptomyces coelicolor A3(2)] Length=1329 Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 219/686 (32%), Positives = 330/686 (49%), Gaps = 66/686 (9%) Query 12 AAAASDISAPAQPARGKPQQRPPSWSPR----NWPVRWKVFTIALLPLVVAMVLAGLRVE 67 A A+ SAP Q + KP + PR NW + ++ ++ LP+V A L LR+ Sbjct 48 AGQAAGPSAPGQQSPAKPAKGSTGPGPRIALRNWRISTRLVSLLALPVVAATSLGALRIN 107 Query 68 AAMASTSGLRLVAARAEMIPAITKYMSALD---------VAVLASSTGHDVEG------- 111 +M L + EM T+ +AL +A + S+ V+G Sbjct 108 QSMDDIQQLENMKLLTEMTKQATELAAALQEERDQSAGPLAHGSKSSAIAVKGDREQTDR 167 Query 112 AQKNFTARKYELQTRLADTDVIA--DVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAY- 168 A KNF + ++ D ++ D G+ + LN + + V AY Sbjct 168 ALKNFLDKSEQIDAASKDGKLVGVRDSLVGIASDLNDLTKIRSTAYTATDNSTQTVEAYH 227 Query 169 ---APLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILV--------TRG 217 LL +Q++ +A+ D Q + + LS A+ ++Q ++ T Sbjct 228 RLITHLLDLSQDMAEATSNPDMIQ---RTRALSAFSSAKEYASIQRAVLAAALPANNTDK 284 Query 218 ADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPD----------TKNLQQQMVTRMAI 267 DLAE A L ++ S + ++ G G+ D Q R Sbjct 285 GDLAENDRLYAQSALQ-SQTSEIRSFTSIYGDGAEDLLKPISEGNPVIEASDQYAGRAVG 343 Query 268 MSDPAVALVNNP------ELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRD 321 D +L + IQ ++I +++ D E + +++++ AI Sbjct 344 KKDGLASLKARSYQDWLDDSSTKIQQMKNIELKLLEDM-EQQARELRNESEQE---AIIS 399 Query 322 AVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGD----EPIP 377 VL+L + ++V VVAR+++ +R L D A KVA L + + D + Sbjct 400 GVLILLVLGVSLVGAFVVARSMIRSLRRLEDTATKVAQDRLPELVKQLSETDPQDVDTSV 459 Query 378 EPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSV 437 E + V++ +EIG+VA A D++H A+ LA E+ LR VN MF +SRRS+ L+ +QLS+ Sbjct 460 ESVGVHSRDEIGRVAAAFDDVHREAVRLAAEQALLRGNVNAMFTNLSRRSQGLIQRQLSL 519 Query 438 IDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAV 497 I +LE E DP +L SLF+LDHLA R+RRN NLLVLAG + R PVPL V+ AA Sbjct 520 ISELESREADPDQLSSLFKLDHLATRMRRNGENLLVLAGEEPGRRWTRPVPLVDVLRAAA 579 Query 498 SEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSV 557 SEVE Y R+++A VP V G ++HLLAEL++NA +SSP T V+V +G V Sbjct 580 SEVEQYERIELASVPSTEVAGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRV 639 Query 558 LLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVT 617 L+ I D+G+G++ D N RL + V +R MGLFVVGRL+ RHGIR+ LR + Sbjct 640 LIEIHDTGIGLSPEDLAAINERLASPPTVDVSVSRRMGLFVVGRLSQRHGIRIQLRPSDS 699 Query 618 GEQGTGTTAEVYLPLAVLEGTAPAQP 643 G GTTA V LP+ V +G QP Sbjct 700 G----GTTALVMLPVDVAQGGRKPQP 721 >gi|302542260|ref|ZP_07294602.1| periplasmic sensor signal transduction histidine kinase [Streptomyces hygroscopicus ATCC 53653] gi|302459878|gb|EFL22971.1| periplasmic sensor signal transduction histidine kinase [Streptomyces himastatinicus ATCC 53653] Length=1237 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 207/643 (33%), Positives = 330/643 (52%), Gaps = 56/643 (8%) Query 39 RNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSALDV 98 +NW + ++ ++ LP+V A L LR++ ++ + L + EM T+ +AL Sbjct 4 KNWRISTRLVSLLALPVVAATTLGALRIDTSLDNIQQLDQMKLLTEMTQQATQLSNALQA 63 Query 99 AVLASSTGHDVEGAQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQAL-------- 150 S+ +G +K+ + TR IA R + + G Q++ Sbjct 64 ERDKSAGPLASKGNEKDDGV----VSTREDTNRAIAAFRKATDNVEPGDQSMAGVQSTLV 119 Query 151 -LDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTM 209 +D+ L +RD TAY + V D + ++S + + Q +++A R + Sbjct 120 NIDRQLGKINDIRD--TAYDNSQYYSLTVQDYNELINS--LLSLSQDMAQATSNRAMINN 175 Query 210 QEILVTRGADLAEPQLRSAMVTLAGTEPS--------TLFGMSA------ALGAGSP--- 252 L T + ++ A+++ A +P + F +A ALG+ Sbjct 176 TRALATFSSAKEYASIQRALISAALADPKGAEFSANDSRFARTAVDKENEALGSFKQIRQ 235 Query 253 -DTKNLQQQMVTRMAIMSDPAVA--LVNNPELLHSIQITR-DIAEQ--VITDTTEAVTKS 306 ++++L + + +R I + A V +P+ L + + T D +Q + D + ++ Sbjct 236 GNSEDLLEPLDSRPDIKAATMYADRAVRDPDGLKAEKRTYLDWYDQDSIKIDEMGKIEQT 295 Query 307 VQSQATDR----RDAAIRDAVL----VLAAIATAIVVVLVVARTLVGPMRVLRDGALKVA 358 + S+ T + RD A +DA+L +L + ++V VVAR++V +R L+D A VA Sbjct 296 LLSEMTQKSRELRDDAQQDAILNGALILLVLGVSLVGAFVVARSMVRSLRRLQDTAQDVA 355 Query 359 HTDLDGEIAAVRAGD----EPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETRLRL 414 L + + D + E + V++ +EIG+VA A D++H A+ LA E+ LR Sbjct 356 EKRLPELVKQLSESDPQDVDTSVESVGVHSRDEIGRVAAAFDDVHREAVRLAAEQALLRG 415 Query 415 LVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVL 474 VN MF +SRRS+ L+ +QLS+I +LE E DP +L SLF+LDHLA R+RRN NLLVL Sbjct 416 NVNAMFTNLSRRSQGLIQRQLSLISELESREADPDQLSSLFKLDHLATRMRRNGENLLVL 475 Query 475 AGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAELIDN 534 AG + R PVPL V+ AA SEVE Y R++++ VP V G ++HLLAEL++N Sbjct 476 AGEEPGRRWTRPVPLVDVLRAAASEVEQYERIELSSVPATEVAGRVVNDLVHLLAELLEN 535 Query 535 ALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHM 594 A +SSP T V+V +G VL+ I D+G+G++ D N RL + V +R M Sbjct 536 ATSFSSPQTKVKVTGHALPDGRVLVEIHDTGIGLSPEDLAAINERLASPPTVDVSVSRRM 595 Query 595 GLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEG 637 GLFVVGRL+ RHGIR+ LR +G GTTA V LP+ V +G Sbjct 596 GLFVVGRLSLRHGIRIQLRPSDSG----GTTALVMLPVDVAQG 634 >gi|134097168|ref|YP_001102829.1| sensor signal transduction histidine kinase [Saccharopolyspora erythraea NRRL 2338] gi|291005375|ref|ZP_06563348.1| sensor signal transduction histidine kinase [Saccharopolyspora erythraea NRRL 2338] gi|133909791|emb|CAL99903.1| sensor signal transduction histidine kinase [Saccharopolyspora erythraea NRRL 2338] Length=1128 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 213/639 (34%), Positives = 323/639 (51%), Gaps = 63/639 (9%) Query 36 WSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSA 95 W RNW +R K+ + L+P + A+ + G+RV M++ L + + E+ Sbjct 26 WWLRNWRLRTKMAAVLLVPTLAALGVGGIRVYDGMSTADRLNTIVEQVELAQRTADITHE 85 Query 96 L----DVAVLASSTG------HDVEGAQKNFTARKYEL-QTRLADT--DVIADVRSGVNT 142 L D AV+ +++G +D + + + ++ L ++ L D V +S +N Sbjct 86 LQRERDHAVVQTASGGADRVPYDDQARRVDDAIARFRLPESELEDFTPKVREAYQSALNR 145 Query 143 L--LNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQV------ 194 L LN +A++++ DS L AY ++ + NV A V S TQ+ Sbjct 146 LSSLNSLRAIVNRGFTDSQTL----VAYNSVVESVLNVPRA---VSSGAANTQLTQSAWA 198 Query 195 -QGLSRA-------------VGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTL 240 + +SRA G R + ++ R AD + +A L Sbjct 199 AESISRAKEYLAQQRSILLSAGIRNEFFTGQVAQMREADARFEAAFTEFENVASPAQREL 258 Query 241 FGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300 + A GA D++ ++Q + I ++ AL NP + TR ++ Sbjct 259 YAARVA-GAAVDDSEQIKQYAL----INAENDRALNMNPGEWGAASGTRG---DLLRGVE 310 Query 301 EAVTKSVQSQATDRRDAA----IRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALK 356 E V A DAA +RD L++ + A V +AR+++ P+R LR GAL+ Sbjct 311 EEVLGEFHDTAKQYADAAWWSMLRDGALIVLLLLVAFAVASYIARSMLRPLRTLRYGALE 370 Query 357 VAHTDLDGEIAAVR-----AGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEETR 411 +A L I V A +P P+ V+T EEIGQVA + D +H +AL LA E+ Sbjct 371 IAEQSLPQAIKQVNENPSGASSVTVP-PVPVHTREEIGQVARSFDAVHQQALRLASEQAL 429 Query 412 LRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANL 471 LR VN++F ++RRS++LV +QLS+ID+LE++E+DP +L SLF LDHLA R+RRN+ NL Sbjct 430 LRTNVNDLFVNLARRSQTLVQRQLSLIDRLEQDEQDPDQLSSLFELDHLATRMRRNNENL 489 Query 472 LVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLLAEL 531 L+L G +TR PVPLS V+ AAVSEVE Y R+ IA PD A+ G +HL+AEL Sbjct 490 LILGGTDLTRRMMRPVPLSEVVGAAVSEVEQYARIAIAESPDLAIQGRVVNDFVHLIAEL 549 Query 532 IDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSA 591 ++NA +S+P T V V A + +++ I D G+G+ D + N RL EV + Sbjct 550 LENATVFSNPDTEVTVRTAYRRQ-ELVIEIRDRGVGIDDEEIDEINDRLTRPPEVDVAVS 608 Query 592 RHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYL 630 R MGLFVVG+LA RH I V L+ G+ G TA V+L Sbjct 609 RRMGLFVVGQLARRHNIGVQLQN--NGDLEGGVTATVHL 645 Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust. Identities = 39/106 (37%), Positives = 47/106 (45%), Gaps = 25/106 (23%) Query 766 DLDWKSVWDHGWSAAAE--AADKPVQSRTDYGLPVREPGARLVPGAAV--PEGPDREHPG 821 D W S D GW AA + VQ T GLP R P + LVPG+A P+ P Sbjct 1024 DPGWGSA-DVGWQAAEALVQQSQQVQETTSAGLPKRVPKSNLVPGSAAPRPQSP------ 1076 Query 822 AALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGRSHAR 867 AP A R PDAVR +S+ G+R GR HA+ Sbjct 1077 -------------APAKPATTRSPDAVRGRMSNFQQGIRRGR-HAK 1108 >gi|294631591|ref|ZP_06710151.1| periplasmic sensor signal transduction histidine kinase [Streptomyces sp. e14] gi|292834924|gb|EFF93273.1| periplasmic sensor signal transduction histidine kinase [Streptomyces sp. e14] Length=815 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 213/672 (32%), Positives = 333/672 (50%), Gaps = 59/672 (8%) Query 23 QPARGKPQQRPPS-WSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAA 81 +PA+G P S + RNW + ++ ++ LP+V A L GLR+ + L + Sbjct 131 KPAKGAAPTGPGSRMALRNWRISTRLVSLLALPVVAATTLGGLRINQNLDDIQQLDNMKL 190 Query 82 RAEMIPAITKYMSALD---------VAVLASSTGHDVEG-------AQKNFTARKYELQT 125 +M T+ +AL +A +S++ V+G A+ NF E+ + Sbjct 191 LTDMTKQATELAAALQEERDQSAGPLAHPSSASAITVKGFRDKTDRAKDNFLTASEEIDS 250 Query 126 RLADTDV--IADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAY----APLLLTAQNVI 179 D ++ + D G+ + LNG + V AY LL +Q++ Sbjct 251 ASKDGNLQGVRDTLVGLASELNGLAKIRKSAYTSERNSSQTVEAYHHLITELLGLSQDMA 310 Query 180 DASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILV--------TRGADLAEPQLRSAMVT 231 +A+ + E I+ + + L+ A+ ++Q ++ T DL+E A Sbjct 311 EATS--NPEMIQ-RTRALAAFSSAKEYASVQRAVIAAALPANNTSKGDLSENDRLYAQSA 367 Query 232 LAGTEPS-----TLFGMSAA-----LGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPEL 281 L ++G A + G+P ++ Q + A+ S + +N Sbjct 368 LDSQTSEINSFRNIYGSGAEELLKPVEEGNPTIQSADQ--YAKRALDSAEGLPSLNKRSY 425 Query 282 LHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDA----VLVLAAIATAIVVVL 337 + + EQ + + ++++ +A + R + +DA VL+L + ++V Sbjct 426 RDWVDDSSTKIEQ-MRKIEHTLLENMEQKARELRSSTEQDAIISGVLILLVLGVSLVGAF 484 Query 338 VVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGD----EPIPEPLAVYTTEEIGQVAH 393 VVAR+++ +R L+D A +VA L + + D + E + V++ +EIGQVA Sbjct 485 VVARSMIRSLRRLQDTATRVAQDRLPELVKQLSESDPQDVDTTVESVGVHSRDEIGQVAA 544 Query 394 AVDELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDS 453 A DE+H A+ LA E+ LR VN MF +SRRS+ L+ +QLS+I +LE E DP +L S Sbjct 545 AFDEVHREAVRLAAEQALLRGNVNAMFTNLSRRSQGLIQRQLSLISELESREADPDQLSS 604 Query 454 LFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPD 513 LF+LDHLA R+RRN NLLVLAG + R PVPL V+ AA SEVE Y R+++A VP Sbjct 605 LFKLDHLATRMRRNGENLLVLAGEEPGRRWTRPVPLVDVLRAAASEVEQYERIELASVPT 664 Query 514 CAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADR 573 V G ++HLLAEL++NA +SSP T V+V +G VL+ I D+G+G++ D Sbjct 665 TEVAGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDL 724 Query 574 RMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLA 633 N RL + V +R MGLFVVGRL+ RHGIR+ LR +G GTTA V LP+ Sbjct 725 AAINERLASPPTVDVSVSRRMGLFVVGRLSQRHGIRIQLRPSDSG----GTTALVMLPVD 780 Query 634 VLEGTAPAQPPK 645 V +G P K Sbjct 781 VAQGGKKPAPGK 792 >gi|333024217|ref|ZP_08452281.1| putative histidine kinase [Streptomyces sp. Tu6071] gi|332744069|gb|EGJ74510.1| putative histidine kinase [Streptomyces sp. Tu6071] Length=1439 Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 210/660 (32%), Positives = 329/660 (50%), Gaps = 63/660 (9%) Query 39 RNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSAL-- 96 RNW + ++ ++ +LP+ A L G+R+ ++ L + +M T+ +AL Sbjct 83 RNWRISTRLVSLLVLPVAAATTLGGIRISDSLDDIQQLDNMKLLTDMTKQATELAAALQD 142 Query 97 DVAVLASSTGHDVEGAQKNFTARKY----ELQTRLADTDVIADVRSGVNTLLNGGQALLD 152 + A H V+ + + + ++ T L +T I N LNG ++ LD Sbjct 143 ERDQSAGPLSHKVKATDYSVASWRQKTDRQVATFLQNTKDITG-----NNELNGVRSNLD 197 Query 153 KVLADSIGLRD-RVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQE 211 + L+ R AYA Q V S +D Q+ + Q +++A + Sbjct 198 AITKRVAQLKAIRRDAYADDASITQTVDAYSQLID--QLLSLSQEMAQATSNPEMVQRTR 255 Query 212 ILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSA------ALGAGSPDTKNLQQQMVTRM 265 L + ++ A++ A + FG + AL A S + + Q Sbjct 256 ALAAFSSAKEYASIQRAVLAAALPPNKSQFGKLSETDRRYALNALSNEDDEINQFKEIYG 315 Query 266 AIMSDPAVALVN-NPELLHSIQITRDIAEQVIT--------------DTTEAVTKSV--- 307 A DP L +P+ +I+ RD A+ ++ D T++ ++ + Sbjct 316 AYAGDPEDLLKPIDPDEQPTIKGARDYAQGSLSTQGGMELRAKRSYKDWTDSASEEINQM 375 Query 308 -----------QSQATDRRDAAIRDAV----LVLAAIATAIVVVLVVARTLVGPMRVLRD 352 + +A + R +A RDA+ L++ + ++V VV+R+++ +R L+D Sbjct 376 KTIELTLLGQMEQKARELRQSAERDAIINGALIILVLGVSLVGAFVVSRSMIRSLRRLQD 435 Query 353 GALKVAHT---DLDGEIAAVRAGDEPIP-EPLAVYTTEEIGQVAHAVDELHTRALLLAGE 408 A KVA +L G+++ D + E + V++ +EIG+VA A D++H A+ LA E Sbjct 436 TATKVAQERLPELVGQLSESDPQDVDLSVESVGVHSRDEIGRVATAFDDVHREAVRLAAE 495 Query 409 ETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNS 468 + LR VN MF +SRRS+ L+ +QLS+I +LE E DP +L SLF+LDHLA R+RRN Sbjct 496 QAMLRGNVNAMFTNLSRRSQGLIQRQLSLISELESREADPDQLSSLFKLDHLATRMRRNG 555 Query 469 ANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLL 528 NLLVLAG + R PVPL V+ AA SEVE Y R++++ VP V G ++HLL Sbjct 556 ENLLVLAGEEPGRRWTRPVPLVDVLRAAASEVEQYERIELSAVPSTEVAGRVVNDLVHLL 615 Query 529 AELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTP 588 AEL++NA +SSP T V+V +G VL+ I D+G+G++ D N RL A V Sbjct 616 AELLENATSFSSPQTKVKVTGHALPDGRVLVEIHDTGIGLSPEDLAAINERLAAPPTVDV 675 Query 589 DSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEG--TAPAQPPKP 646 +R MGLFVVGRL+ RHGIR+ LR +G GTTA V LP+ V +G P +P P Sbjct 676 SVSRRMGLFVVGRLSQRHGIRIQLRPSDSG----GTTALVMLPVDVAQGGRKVPGKPGAP 731 >gi|311898506|dbj|BAJ30914.1| putative two-component system sensor kinase [Kitasatospora setae KM-6054] Length=1335 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 211/646 (33%), Positives = 321/646 (50%), Gaps = 62/646 (9%) Query 36 WSPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSA 95 ++ RNW +R ++ + LLP++VA+V GLRV+++M ++ L ++ AE+ T A Sbjct 90 FAMRNWRIRTRLIALLLLPVMVALVFGGLRVQSSMENSRELSQMSDLAELARTATDLADA 149 Query 96 L----DVAVL------ASSTGHDVEGAQK---------NFTARKYELQTRLADTDVIADV 136 L D+A + T DV+ A N A K++ ++ V Sbjct 150 LQTERDIAAGPVAHGGNADTDKDVQKAYSDSSALSKRFNAAADKFDDLDLAGSKTLLLQV 209 Query 137 RSGVNTLLNGGQALLDKVLADSIGLRDRVTAYA----PLLLTAQNVIDASVRVDSEQIRT 192 R +NTL + D ++ +T Y L+ AQ++ ++ +S ++ Sbjct 210 RKDLNTLPRARRG----AFTDPNNIQATITNYNVIINDLIGAAQDI---AITSNSTELVK 262 Query 193 QVQGLSRAVGARGQMTMQEILVTRGADLAEP-------QLRSAMVTLAGTEPSTLFGMSA 245 + L + ++ +MQ L++ A LA P + + L +E + + +A Sbjct 263 STRTLYQFSLSKEATSMQRALIS--AALANPVTPTLSASDETFGIRLINSEDNAMENFTA 320 Query 246 ALGAGSPDTKNLQQQM-VTRMAIMSDPAVALVNNPELL-----------HSIQITRDIAE 293 G G+ ++L+ M ++ +D V NP + + + AE Sbjct 321 LYGEGA--ARSLRSAMSYNKVVAEADRFAQAVLNPNGIKQADGVSYQQWYEESTAKINAE 378 Query 294 QVITDTT-EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRD 352 +VI E + Q +D ++ +A LV + AI +VAR++V + L+ Sbjct 379 RVIEKKLLEDLNGKAQKLQSDADAQSVINASLVALVLVVAIAGAALVARSMVRSLTRLQT 438 Query 353 GALKVAHTDLDGEIAAVRAGD----EPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGE 408 A VA L + + D + EP+ V + +EIG VAHA D +H A+ LA E Sbjct 439 SAEDVAERRLPELVKTLSESDPHDVDVTVEPVGVDSADEIGHVAHAFDMVHREAVRLAAE 498 Query 409 ETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNS 468 + LR +N MF +SRRS+ L+ +QLS+I +LE E DP +L SLF+LDHLA R+RRN Sbjct 499 QALLRGNINAMFTNLSRRSQGLIQRQLSLISELESREADPDQLASLFKLDHLATRMRRNG 558 Query 469 ANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIHLL 528 NLLVLAG R PVPL V+ AA SEVE Y RV++A VP V G ++HLL Sbjct 559 ENLLVLAGEDPGRRWTRPVPLVDVLRAAASEVEQYERVELASVPTAEVAGRIVNDLVHLL 618 Query 529 AELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTP 588 AEL++NA +SSP T VRV +G VL+ I D+G+G++ D N RL V Sbjct 619 AELLENATSFSSPQTRVRVTGHALPDGRVLIEIHDTGIGLSPDDLADINERLANPPVVDV 678 Query 589 DSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAV 634 +R MGLFVVGRL+ RHGIR+ LR +G GTTA V LP+ V Sbjct 679 SVSRRMGLFVVGRLSLRHGIRIQLRPSDSG----GTTALVMLPVDV 720 >gi|300789294|ref|YP_003769585.1| two-component system histidine kinase [Amycolatopsis mediterranei U32] gi|299798808|gb|ADJ49183.1| two-component system histidine kinase [Amycolatopsis mediterranei U32] gi|340530939|gb|AEK46144.1| two-component system histidine kinase [Amycolatopsis mediterranei S699] Length=731 Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 220/587 (38%), Positives = 293/587 (50%), Gaps = 106/587 (18%) Query 291 IAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVL 350 +AEQV T ++ +V +Q R A+RD LV+A++ A+ + L VAR++V P+R L Sbjct 225 LAEQVKT-----LSDAVGAQTNTARSDALRDTALVIASLLGALAIALAVARSVVAPIRRL 279 Query 351 RDGALKVAHTDLDGEIAAVRAGDE-------PIPEPLAVYTTEEIGQVAHAVDELHTRAL 403 AL A L G I +R G+E PIP V + EEIGQ+A A D++H +A+ Sbjct 280 HAAALDTAQRRLPGTIERIREGEEVDWRRTAPIP----VDSEEEIGQLARAFDDMHRQAV 335 Query 404 LLA-GEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAA 462 LA GE+ +R+ V+EMF T+SRRS+SLV+ QLSVI+ LE +E+DP RL LF++DH+A Sbjct 336 RLAVGEQAEMRIQVSEMFMTLSRRSQSLVELQLSVIEDLEADEQDPQRLAELFQIDHIAT 395 Query 463 RLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAG 522 RLRRN NL VLAG + R PV ++ AA SEV+DY+RV + P +V AA Sbjct 396 RLRRNGENLQVLAGGKPVRRDVGPVATVELLRAATSEVKDYQRVSLGNAPRGSVQSEAAA 455 Query 523 GVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRA 582 V+H+LAEL++NA+R S P V + A G +G +L+ + D GLGMT D AN RL A Sbjct 456 DVVHILAELLENAIRSSPPEEQVVLTADRGFDGGLLIEVVDVGLGMTREDLEAANARLAA 515 Query 583 GGEVTPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGTAPAQ 642 G V+P++ R MGLFVV RLA HGI V LR T G TA V++P ++ Sbjct 516 GAAVSPETTRRMGLFVVSRLAASHGITVRLRPTTTRTASAGITASVHVPGVLI------- 568 Query 643 PPKPRVFAIKPPCPEPAAADPTDVPAAIGPLPPVTLLPRRTPGSSGIADVPAQPMQQRRR 702 + LPP T+ P TP +G V R Sbjct 569 ---------------------------LVDLPPRTVPPALTPAVNG--SVNGGVNGAVRH 599 Query 703 ELKTPWWEDRFQQEPKQPPAPEPRPAPPPAKPAPPAGPVDDDVIYRRMLSEMVGDPHELA 762 EL+ W PA EP P P P I+ +MLS H A Sbjct 600 ELEPRW------------PAEEPPPVAVADPPTP---------IFDQMLS------HWFA 632 Query 763 HSPDL-----DWKSVWDHGWSAAAEAADKPVQSR-TDYGLPVREPGARLVPGAAVPEGPD 816 +P W + D AA A S TD GLP R PGA+L PG+ P P Sbjct 633 EAPATPARPGTWATPADPVRQAAEAAVGTLDDSEFTDSGLPARTPGAQLAPGSVTPRAPQ 692 Query 817 REHPGAALASNGGLHPGRAPRHAAAVRDPDAVRASISSHFGGVRTGR 863 P A RDP AVR ++S H+ G+R R Sbjct 693 PPDP--------------------AFRDPAAVRNNLSRHYSGMRAAR 719 >gi|296268954|ref|YP_003651586.1| ATP-binding region ATPase domain-containing protein [Thermobispora bispora DSM 43833] gi|296091741|gb|ADG87693.1| ATP-binding region ATPase domain protein [Thermobispora bispora DSM 43833] Length=1051 Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 232/691 (34%), Positives = 346/691 (51%), Gaps = 82/691 (11%) Query 37 SPRNWPVRWKVFTIALLPLVVAMVLAGLRVEAAMASTSGLRLVAARAEMIPAITKYMSAL 96 +PRNW V ++ + + P VA++LAG+R+ ++ + G R + AE + L Sbjct 16 NPRNWRVPTRLTALIIAPTFVAVLLAGMRIVGSIDNLDGYRRASVAAEYSVHLRDLAEQL 75 Query 97 ----DVAVLASST--GHDVEGAQKNFTARKYELQTRLADTDVIADVRS-----GVNTLLN 145 D+ V T +V+GA + A++ + LA T V+A++R G T Sbjct 76 ALERDLLVWGGGTRRKFNVDGATELTLAQQQAVVDPLA-TQVLANLRELDDGFGERTEQQ 134 Query 146 GGQAL--LDKVLA-DSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVG 202 Q + L+ + A G D TA +L + A V D+ Q+ G SRA+ Sbjct 135 AQQVVTQLENLAAIRKAGSSDGYTALIARILRLHDEF-AGVSDDA-----QIVGRSRALA 188 Query 203 A----RGQMTMQEILVTRG----------ADL-----AEPQLRSAMVTLAGTEPSTLFG- 242 A + ++ +Q ++T+ A+L AE + + + T P+ G Sbjct 189 ALAHVKEEVALQRAMLTKELLERYQSFTPAELEDFLAAESREQGYLSTFYAEAPTPTAGR 248 Query 243 ----------MSAALGAGSPDTKNLQQQMVTRMAIMSDPAVA-LVNNPELLHSIQIT-RD 290 +S L T LQ ++R A+ N+ + + I + R+ Sbjct 249 LVTLLNDNDVVSTELTKSWAVTLGLQHVSLSRYQARDKTALRWFQNSTKKIQQIDVVQRE 308 Query 291 IAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVL 350 +A V+ ++ Q Q+T++R+A + L+ + + ++AR++V P+R L Sbjct 309 LAGAVLD-------RARQLQSTEQRNALVAGG-LIFTLLLLVLAHTALIARSMVIPLRRL 360 Query 351 RDGALKVAHTDLDGEIAAVRAGD----EPIPEPLAVYTTEEIGQVAHAVDELHTRALLLA 406 R AL VA T L + +R D EP P+AV + +EI +VA A DE+H +A+ LA Sbjct 361 RAEALDVAGTRLPEAVQRIRESDQVSAEPEITPIAVGSGDEIDEVAQAFDEVHRQAVRLA 420 Query 407 GEETRLRLLVNEMFETMSRRSRSLVDQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRR 466 EE RLR VN MF +SRR+++LV++Q+++ID+LER EED RL LF+LDHLA R+RR Sbjct 421 AEEARLRANVNAMFVNLSRRTQTLVERQIALIDKLERGEEDGRRLADLFKLDHLATRMRR 480 Query 467 NSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARVPDCAVVGAAAGGVIH 526 NS NLLVLAG + R +P L VI A++SEVEDY RV++ A+ G A VIH Sbjct 481 NSENLLVLAGHEPPRKRTKPARLVDVIRASLSEVEDYERVELKVHRSIAISGHAVNDVIH 540 Query 527 LLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEV 586 L+AELI+NAL +S T V V++ G+V+L +SDSG+GM+ + N +L V Sbjct 541 LVAELIENALSFSPRDTKVIVSSVFVDGGAVMLGVSDSGIGMSHEELAEVNRKLADPPTV 600 Query 587 TPDSARHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEVYLPLAVLEGT-----APA 641 A+ MGLFVVGRLA RHGIRV LR GTG A V P ++ P Sbjct 601 DASVAKRMGLFVVGRLAMRHGIRVQLR---ANSDGTGVVAMVLFPPELVHNADQPAGQPG 657 Query 642 QP--------PKPRVFAIKPPC-PEPAAADP 663 QP P + FA P P P ADP Sbjct 658 QPMARTSVGLPIRQPFAGPSPSRPGPFGADP 688 Lambda K H 0.317 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2145130551362 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40