BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3366
Length=154
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610502|ref|NP_217883.1| tRNA/rRNA methylase SpoU [Mycobacte... 314 3e-84
gi|289449064|ref|ZP_06438808.1| tRNA/rRNA methylase spoU [Mycoba... 313 6e-84
gi|289747187|ref|ZP_06506565.1| tRNA/rRNA methylase spoU [Mycoba... 311 2e-83
gi|289759523|ref|ZP_06518901.1| tRNA/rRNA methylase spoU [Mycoba... 310 3e-83
gi|254822692|ref|ZP_05227693.1| RNA methyltransferase, TrmH fami... 277 3e-73
gi|240169060|ref|ZP_04747719.1| putative tRNA/rRNA methylase [My... 276 7e-73
gi|289555644|ref|ZP_06444854.1| tRNA/rRNA methylase spoU [Mycoba... 274 3e-72
gi|296168816|ref|ZP_06850498.1| SpoU rRNA methylase [Mycobacteri... 271 3e-71
gi|2222703|emb|CAB09926.1| rRNA methylase [Mycobacterium leprae] 268 1e-70
gi|15827131|ref|NP_301394.1| tRNA/rRNA methyltransferase [Mycoba... 268 2e-70
gi|118466307|ref|YP_883469.1| RNA methyltransferase, TrmH family... 268 2e-70
gi|145225467|ref|YP_001136145.1| tRNA/rRNA methyltransferase Spo... 268 2e-70
gi|41409572|ref|NP_962408.1| hypothetical protein MAP3474 [Mycob... 268 2e-70
gi|315445821|ref|YP_004078700.1| rRNA methylase SpoU family [Myc... 265 2e-69
gi|120402541|ref|YP_952370.1| tRNA/rRNA methyltransferase SpoU [... 263 8e-69
gi|336459772|gb|EGO38687.1| putative rRNA methylase SpoU family ... 260 4e-68
gi|108798157|ref|YP_638354.1| tRNA/rRNA methyltransferase SpoU [... 256 1e-66
gi|342861580|ref|ZP_08718227.1| RNA methyltransferase, TrmH fami... 256 1e-66
gi|118468881|ref|YP_886013.1| RNA methyltransferase, TrmH family... 249 9e-65
gi|183981185|ref|YP_001849476.1| tRNA/rRNA methyltransferase Spo... 247 3e-64
gi|226305480|ref|YP_002765440.1| methyltransferase [Rhodococcus ... 246 9e-64
gi|118618277|ref|YP_906609.1| tRNA/rRNA methyltransferase SpoU [... 244 3e-63
gi|333991842|ref|YP_004524456.1| tRNA/rRNA methyltransferase Spo... 244 4e-63
gi|229489465|ref|ZP_04383328.1| RNA methyltransferase, TrmH fami... 242 1e-62
gi|325675573|ref|ZP_08155257.1| SpoU rRNA methylase [Rhodococcus... 239 1e-61
gi|226365700|ref|YP_002783483.1| RNA methyltransferase [Rhodococ... 238 2e-61
gi|54022887|ref|YP_117129.1| putative ribosomal RNA methyltransf... 236 9e-61
gi|296138668|ref|YP_003645911.1| tRNA/rRNA methyltransferase Spo... 233 5e-60
gi|312140792|ref|YP_004008128.1| tRNA/rRNA methyltransferase [Rh... 233 6e-60
gi|111023195|ref|YP_706167.1| tRNA/rRNA methyltransferase [Rhodo... 232 2e-59
gi|326381925|ref|ZP_08203618.1| tRNA/rRNA methyltransferase SpoU... 225 2e-57
gi|169630781|ref|YP_001704430.1| tRNA/rRNA methyltransferase Spo... 218 3e-55
gi|343926621|ref|ZP_08766119.1| putative RNA methyltransferase [... 217 4e-55
gi|262201698|ref|YP_003272906.1| tRNA/rRNA methyltransferase Spo... 214 2e-54
gi|317508477|ref|ZP_07966145.1| RNA methyltransferase [Segnilipa... 210 4e-53
gi|300786824|ref|YP_003767115.1| RNA methyltransferase CspR [Amy... 208 2e-52
gi|311743114|ref|ZP_07716922.1| SpoU rRNA methylase [Aeromicrobi... 207 4e-52
gi|300741849|ref|ZP_07071870.1| RNA methyltransferase, TrmH fami... 207 4e-52
gi|119962280|ref|YP_948432.1| TrmH family RNA methyltransferase ... 206 8e-52
gi|296394298|ref|YP_003659182.1| tRNA/rRNA methyltransferase [Se... 206 1e-51
gi|116671282|ref|YP_832215.1| tRNA/rRNA methyltransferase (SpoU)... 205 2e-51
gi|311111742|ref|YP_003982964.1| TrmH family RNA methyltransfera... 205 2e-51
gi|220913205|ref|YP_002488514.1| tRNA/rRNA methyltransferase Spo... 203 8e-51
gi|325963950|ref|YP_004241856.1| rRNA methylase, , group 2 [Arth... 202 1e-50
gi|255327010|ref|ZP_05368086.1| RNA methyltransferase, TrmH fami... 202 2e-50
gi|302527165|ref|ZP_07279507.1| tRNA/rRNA methyltransferase [Str... 201 2e-50
gi|332671773|ref|YP_004454781.1| tRNA/rRNA methyltransferase Spo... 201 4e-50
gi|319948750|ref|ZP_08022870.1| tRNA/rRNA methyltransferase [Die... 200 5e-50
gi|334336064|ref|YP_004541216.1| tRNA/rRNA methyltransferase (Sp... 200 6e-50
gi|257056238|ref|YP_003134070.1| putative rRNA methylase SpoU fa... 199 8e-50
>gi|15610502|ref|NP_217883.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Rv]
gi|15842962|ref|NP_337999.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
CDC1551]
gi|31794549|ref|NP_857042.1| tRNA/rRNA methylase SpoU [Mycobacterium bovis AF2122/97]
66 more sequence titles
Length=154
Score = 314 bits (805), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 154/154 (100%), Positives = 154/154 (100%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV
Sbjct 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV
Sbjct 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
>gi|289449064|ref|ZP_06438808.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
gi|289422022|gb|EFD19223.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
Length=154
Score = 313 bits (801), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 153/154 (99%), Positives = 153/154 (99%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV
Sbjct 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRSLNLSNAA VAVYEAWRQHGFAGAV
Sbjct 121 RIPMLAGRRSLNLSNAATVAVYEAWRQHGFAGAV 154
>gi|289747187|ref|ZP_06506565.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
gi|294995866|ref|ZP_06801557.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 210]
gi|298526847|ref|ZP_07014256.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
gi|289687715|gb|EFD55203.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
gi|298496641|gb|EFI31935.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
gi|326905207|gb|EGE52140.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis W-148]
gi|339296192|gb|AEJ48303.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CCDC5079]
gi|339299795|gb|AEJ51905.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CCDC5180]
Length=154
Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 153/154 (99%), Positives = 153/154 (99%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASLAHAWEALSPARVFAFTAQATTLFTNVGY AGDVLMFGPEPTGLDEATLADTHITGQV
Sbjct 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYHAGDVLMFGPEPTGLDEATLADTHITGQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV
Sbjct 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
>gi|289759523|ref|ZP_06518901.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
gi|289715087|gb|EFD79099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
Length=172
Score = 310 bits (795), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 153/154 (99%), Positives = 153/154 (99%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 19 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 78
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASLAHAWEALSPARVFAFTAQATTLFTNVGY AGDVLMFGPEPTGLDEATLADTHITGQV
Sbjct 79 ASLAHAWEALSPARVFAFTAQATTLFTNVGYHAGDVLMFGPEPTGLDEATLADTHITGQV 138
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV
Sbjct 139 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 172
>gi|254822692|ref|ZP_05227693.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
intracellulare ATCC 13950]
Length=154
Score = 277 bits (709), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/153 (89%), Positives = 141/153 (93%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF+L+F SPRIAPNTGNAIRT AATGCELHLVEP+GFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFKLMFYSPRIAPNTGNAIRTAAATGCELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASLA AW+ALSP RVFAFT+ A T F V YRAGDVLMFGPEPTGLD ATLAD HITGQV
Sbjct 61 ASLAAAWDALSPERVFAFTSHAPTSFAQVRYRAGDVLMFGPEPTGLDAATLADPHITGQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
RIPMLAGRRSLNLSNAAAVAVYEAWRQHG+AGA
Sbjct 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGYAGA 153
>gi|240169060|ref|ZP_04747719.1| putative tRNA/rRNA methylase [Mycobacterium kansasii ATCC 12478]
Length=154
Score = 276 bits (706), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 135/154 (88%), Positives = 143/154 (93%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF+L+FVSP IAPNTGNAIRT AATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFKLMFVSPCIAPNTGNAIRTAAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASL AW+AL PARVFAFTAQATT F++V YRAGDVLMFGPEPTGLD ATLAD HIT QV
Sbjct 61 ASLTAAWDALLPARVFAFTAQATTPFSDVSYRAGDVLMFGPEPTGLDAATLADAHITEQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRSLNLSNAAAVAVYEAWRQH ++GA+
Sbjct 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHDYSGAL 154
>gi|289555644|ref|ZP_06444854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605]
gi|289440276|gb|EFD22769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605]
Length=158
Score = 274 bits (700), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/150 (93%), Positives = 139/150 (93%), Gaps = 3/150 (2%)
Query 5 LFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 64
L VSP P TCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA
Sbjct 12 LRVSP---PTPATPSGTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 68
Query 65 HAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRIPM 124
HAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRIPM
Sbjct 69 HAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRIPM 128
Query 125 LAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
LAGRRSLNLSNAAAVAVYEAWRQHGFAGAV
Sbjct 129 LAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 158
>gi|296168816|ref|ZP_06850498.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896519|gb|EFG76166.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=154
Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/154 (86%), Positives = 141/154 (92%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF+L+F SPRI PNTGNAIRT AATGCELHLVEPLGFDLSEP+LRRAGLDYHDLASVTVH
Sbjct 1 MFKLMFYSPRIPPNTGNAIRTAAATGCELHLVEPLGFDLSEPQLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
SL AWEAL+PARVFAFTAQ+TT F +V YR GDVL+FGPEPTGLD ATLAD HIT +V
Sbjct 61 PSLQAAWEALAPARVFAFTAQSTTAFADVRYRPGDVLLFGPEPTGLDAATLADAHITERV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRSLNLSNAAAVAVYEAWRQHG++GAV
Sbjct 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGYSGAV 154
>gi|2222703|emb|CAB09926.1| rRNA methylase [Mycobacterium leprae]
Length=169
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/154 (84%), Positives = 137/154 (89%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFRLLF +PRI PNTGNAIRT A TGC LHLVEP+GFDLS PKLRRAGLDYHDLASVTVH
Sbjct 16 MFRLLFYTPRIPPNTGNAIRTAAVTGCALHLVEPIGFDLSNPKLRRAGLDYHDLASVTVH 75
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
SL+ AW ALSPARVFAF+ A TLFT+V Y+AGDVLMFGPEPTGLD ATLAD HIT QV
Sbjct 76 TSLSEAWNALSPARVFAFSTLANTLFTDVSYQAGDVLMFGPEPTGLDAATLADDHITQQV 135
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPML+GRRSLNLSNAAAVAVYEAWRQHG+AG V
Sbjct 136 RIPMLSGRRSLNLSNAAAVAVYEAWRQHGYAGLV 169
>gi|15827131|ref|NP_301394.1| tRNA/rRNA methyltransferase [Mycobacterium leprae TN]
gi|221229609|ref|YP_002503025.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923]
gi|13092679|emb|CAC29927.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae]
gi|219932716|emb|CAR70512.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923]
Length=158
Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/154 (84%), Positives = 137/154 (89%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFRLLF +PRI PNTGNAIRT A TGC LHLVEP+GFDLS PKLRRAGLDYHDLASVTVH
Sbjct 5 MFRLLFYTPRIPPNTGNAIRTAAVTGCALHLVEPIGFDLSNPKLRRAGLDYHDLASVTVH 64
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
SL+ AW ALSPARVFAF+ A TLFT+V Y+AGDVLMFGPEPTGLD ATLAD HIT QV
Sbjct 65 TSLSEAWNALSPARVFAFSTLANTLFTDVSYQAGDVLMFGPEPTGLDAATLADDHITQQV 124
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPML+GRRSLNLSNAAAVAVYEAWRQHG+AG V
Sbjct 125 RIPMLSGRRSLNLSNAAAVAVYEAWRQHGYAGLV 158
>gi|118466307|ref|YP_883469.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
avium 104]
gi|254776762|ref|ZP_05218278.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
avium subsp. avium ATCC 25291]
gi|118167594|gb|ABK68491.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
avium 104]
Length=154
Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/153 (85%), Positives = 139/153 (91%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF+L+FVSPRIAPNTGNAIRT AATGCELHLVEP+GFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFKLMFVSPRIAPNTGNAIRTAAATGCELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASLA AW+AL+PARV AFT+ A F + YR GDVLMFGPEPTGLD ATLAD H+T QV
Sbjct 61 ASLAAAWDALTPARVVAFTSHAPASFAELRYRPGDVLMFGPEPTGLDAATLADPHVTTQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
RIPMLAGRRSLNLSNAAA+AVYEAWRQHG+AGA
Sbjct 121 RIPMLAGRRSLNLSNAAAIAVYEAWRQHGYAGA 153
>gi|145225467|ref|YP_001136145.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium gilvum PYR-GCK]
gi|145217953|gb|ABP47357.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
Length=154
Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 132/154 (86%), Positives = 134/154 (88%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF +LF SPRIAPNTGNAIR A TGC LHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFNVLFYSPRIAPNTGNAIRMVAGTGCALHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
A L AW L PARVFAFTA A T F VGY GDVLMFGPEPTGLDEATLAD HITGQV
Sbjct 61 ADLGAAWSVLMPARVFAFTAHAATSFAGVGYEPGDVLMFGPEPTGLDEATLADPHITGQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPML+GRRSLNLSNAAAVAVYEAWRQHGFAGAV
Sbjct 121 RIPMLSGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
>gi|41409572|ref|NP_962408.1| hypothetical protein MAP3474 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398403|gb|AAS06024.1| SpoU [Mycobacterium avium subsp. paratuberculosis K-10]
Length=154
Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/153 (85%), Positives = 139/153 (91%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF+L+FVSPRIAPNTGNAIRT AATGCELHLVEP+GFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFKLMFVSPRIAPNTGNAIRTAAATGCELHLVEPIGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASLA AW+AL+PARV AFT+ A F + YR GDVLMFGPEPTGLD ATLAD H+T QV
Sbjct 61 ASLAAAWDALTPARVVAFTSHAPASFAELRYRPGDVLMFGPEPTGLDAATLADPHVTTQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
RIPMLAGRRSLNLSNAAA+AVYEAWRQHG+AGA
Sbjct 121 RIPMLAGRRSLNLSNAAAIAVYEAWRQHGYAGA 153
>gi|315445821|ref|YP_004078700.1| rRNA methylase SpoU family [Mycobacterium sp. Spyr1]
gi|315264124|gb|ADU00866.1| predicted rRNA methylase SpoU family [Mycobacterium sp. Spyr1]
Length=154
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/154 (86%), Positives = 133/154 (87%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF +LF SPRIAPNTGNAIR A TGC LHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFNVLFYSPRIAPNTGNAIRMVAGTGCALHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
A L AW AL PARVFAFTA A T F VGY GDVLMFGPEPTGLDE TLAD HIT QV
Sbjct 61 ADLGAAWSALMPARVFAFTAHAATSFAGVGYEPGDVLMFGPEPTGLDELTLADPHITEQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPML+GRRSLNLSNAAAVAVYEAWRQHGFAGAV
Sbjct 121 RIPMLSGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
>gi|120402541|ref|YP_952370.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
gi|119955359|gb|ABM12364.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
PYR-1]
Length=154
Score = 263 bits (671), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 127/154 (83%), Positives = 135/154 (88%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF+++F SPRIAPNTGNAIR A TGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFKVMFYSPRIAPNTGNAIRMVAGTGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
L AW A++PARVFAFTA AT F +V YR GDVLMFGPEPTGLD ATLAD HIT QV
Sbjct 61 PDLDSAWAAVTPARVFAFTAHATASFADVAYRPGDVLMFGPEPTGLDAATLADPHITAQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIP+LAGRRSLNLSNAAAVAVYEAWRQ GF+GAV
Sbjct 121 RIPLLAGRRSLNLSNAAAVAVYEAWRQQGFSGAV 154
>gi|336459772|gb|EGO38687.1| putative rRNA methylase SpoU family [Mycobacterium avium subsp.
paratuberculosis S397]
Length=150
Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/149 (85%), Positives = 135/149 (91%), Gaps = 0/149 (0%)
Query 5 LFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 64
+FVSPRIAPNTGNAIRT AATGCELHLVEP+GFDLSEPKLRRAGLDYHDLASVTVHASLA
Sbjct 1 MFVSPRIAPNTGNAIRTAAATGCELHLVEPIGFDLSEPKLRRAGLDYHDLASVTVHASLA 60
Query 65 HAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRIPM 124
AW+AL+PARV AFT+ A F + YR GDVLMFGPEPTGLD ATLAD H+T QVRIPM
Sbjct 61 AAWDALTPARVVAFTSHAPASFAELRYRPGDVLMFGPEPTGLDAATLADPHVTTQVRIPM 120
Query 125 LAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
LAGRRSLNLSNAAA+AVYEAWRQHG+AGA
Sbjct 121 LAGRRSLNLSNAAAIAVYEAWRQHGYAGA 149
>gi|108798157|ref|YP_638354.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium sp. MCS]
gi|119867253|ref|YP_937205.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium sp. KMS]
gi|126433816|ref|YP_001069507.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium sp. JLS]
gi|108768576|gb|ABG07298.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
gi|119693342|gb|ABL90415.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
gi|126233616|gb|ABN97016.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
Length=179
Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/152 (82%), Positives = 131/152 (87%), Gaps = 0/152 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF+++F SPRIAPNTGNAIR A TGCELHLV PLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFKVMFYSPRIAPNTGNAIRMVAGTGCELHLVRPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
L AW+A+ PA V+AFTA AT F +V YR GDVLMFGPEPTGLD TLAD HIT QV
Sbjct 61 DDLPAAWDAVLPASVYAFTAHATVSFADVDYRPGDVLMFGPEPTGLDAETLADPHITAQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAG 152
RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAG
Sbjct 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAG 152
>gi|342861580|ref|ZP_08718227.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
colombiense CECT 3035]
gi|342131069|gb|EGT84358.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
colombiense CECT 3035]
Length=154
Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/153 (87%), Positives = 140/153 (92%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF+L+FVSPRI PNTGNAIRT AATGCELHLVEP+GFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFKLMFVSPRIPPNTGNAIRTVAATGCELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASLA AW AL+P RVFAFT+ A T F +V YRAGDVLMFGPEPTGLD ATLAD HIT QV
Sbjct 61 ASLAAAWAALAPRRVFAFTSHAPTSFADVDYRAGDVLMFGPEPTGLDAATLADPHITAQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
RIPMLAGRRSLNLSNAAA+AVYEAWRQHG+AGA
Sbjct 121 RIPMLAGRRSLNLSNAAAIAVYEAWRQHGYAGA 153
>gi|118468881|ref|YP_886013.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
smegmatis str. MC2 155]
gi|118170168|gb|ABK71064.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
smegmatis str. MC2 155]
Length=154
Score = 249 bits (636), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 127/154 (83%), Positives = 135/154 (88%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR++F SPRIAPNTGNAIR AATGCELHLV PLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFRVMFFSPRIAPNTGNAIRMVAATGCELHLVHPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
L AW+AL PARV+ FTA A+T FT++ YR GDVLMFGPEPTGLDE TLAD HIT Q+
Sbjct 61 DDLPSAWQALMPARVYVFTAHASTPFTDIAYRPGDVLMFGPEPTGLDEQTLADPHITEQI 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRSLNLSNAAAVA YEAWRQHGF GAV
Sbjct 121 RIPMLAGRRSLNLSNAAAVAAYEAWRQHGFPGAV 154
>gi|183981185|ref|YP_001849476.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium marinum M]
gi|183174511|gb|ACC39621.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium marinum M]
Length=154
Score = 247 bits (631), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/154 (85%), Positives = 139/154 (91%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF+LLF SPRIAPNTGNAIRT AATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFKLLFYSPRIAPNTGNAIRTAAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
SL AW+AL PARVFAFTA A+ F++V +R GDVLMFGPEPTGLD ATLAD HIT QV
Sbjct 61 GSLTQAWDALLPARVFAFTAGASVTFSDVDFRPGDVLMFGPEPTGLDAATLADAHITQQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRSLNL+NAAAVAVYEAWRQHG+ GA+
Sbjct 121 RIPMLAGRRSLNLANAAAVAVYEAWRQHGYPGAL 154
>gi|226305480|ref|YP_002765440.1| methyltransferase [Rhodococcus erythropolis PR4]
gi|226184597|dbj|BAH32701.1| putative methyltransferase [Rhodococcus erythropolis PR4]
Length=154
Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 116/154 (76%), Positives = 131/154 (86%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR++F PRI PNTGNAIR A TGCELHLV PLGFDLSEPKL+RAGLDYHDLA+VTVH
Sbjct 1 MFRVMFHEPRIPPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLKRAGLDYHDLATVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+LA AWEA++PARVFAFTA ATT + ++ Y+ GDVL+FGPEPTGL E LAD HIT ++
Sbjct 61 ENLAAAWEAVTPARVFAFTAHATTSYADIAYQPGDVLLFGPEPTGLSEEVLADEHITERL 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPML GRRSLNLSNAAA+ YEAWRQHGF GAV
Sbjct 121 RIPMLPGRRSLNLSNAAALVTYEAWRQHGFKGAV 154
>gi|118618277|ref|YP_906609.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium ulcerans Agy99]
gi|118570387|gb|ABL05138.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium ulcerans Agy99]
Length=154
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 129/154 (84%), Positives = 138/154 (90%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF+LLF SPRIAPNTGNAIRT AATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 1 MFKLLFYSPRIAPNTGNAIRTAAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
SL AW+AL PARVFAFTA A+ F++V +R GDVLMFGPEPTGL ATLAD HIT QV
Sbjct 61 GSLTQAWDALLPARVFAFTAGASVTFSDVDFRPGDVLMFGPEPTGLHAATLADAHITQQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRSLNL+NAAAVAVYEAWRQHG+ GA+
Sbjct 121 RIPMLAGRRSLNLANAAAVAVYEAWRQHGYPGAL 154
>gi|333991842|ref|YP_004524456.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium sp. JDM601]
gi|333487810|gb|AEF37202.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium sp. JDM601]
Length=154
Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 129/154 (84%), Positives = 134/154 (88%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF++LF SPRI PNTGNAIR AATG ELHLVEPLGFDLSEPKLRRAGLDYHDLA+VTVH
Sbjct 1 MFKVLFHSPRIPPNTGNAIRMVAATGAELHLVEPLGFDLSEPKLRRAGLDYHDLAAVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASL AW AL PARVFAFT+ A T F +V YRAGDVLMFGPEP GLD ATLAD HITGQV
Sbjct 61 ASLPDAWAALMPARVFAFTSHADTSFADVCYRAGDVLMFGPEPDGLDAATLADPHITGQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRSLNLSNAAAVA YEAWRQHGF G V
Sbjct 121 RIPMLAGRRSLNLSNAAAVAAYEAWRQHGFPGGV 154
>gi|229489465|ref|ZP_04383328.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus erythropolis
SK121]
gi|229323562|gb|EEN89320.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus erythropolis
SK121]
Length=166
Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/154 (74%), Positives = 130/154 (85%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
++RL+F PRI PNTGNAIR A TGCELHLV PLGFDLSEPKL+RAGLDYHDLA+VTVH
Sbjct 13 VYRLMFHEPRIPPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLKRAGLDYHDLATVTVH 72
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+L AWEA++PARVFAFTA ATT + ++ Y+ GDVL+FGPEPTGL E LAD H+T ++
Sbjct 73 ENLTAAWEAVTPARVFAFTAHATTSYADIAYQPGDVLLFGPEPTGLSEEVLADEHVTERL 132
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPML GRRSLNLSNAAA+ YEAWRQHGF GAV
Sbjct 133 RIPMLPGRRSLNLSNAAALVTYEAWRQHGFKGAV 166
>gi|325675573|ref|ZP_08155257.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
gi|325553544|gb|EGD23222.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
Length=181
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/154 (74%), Positives = 127/154 (83%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
+FR++F PRI PNTGNAIR A TGCELHLV PLGFDLSEPKLRRAGLDYHDLASVTVH
Sbjct 28 VFRVMFHEPRIPPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLRRAGLDYHDLASVTVH 87
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+L AW+AL P RVFAFTA A+T + ++ Y+ GDVL+FGPEPTGL + L D H+T QV
Sbjct 88 ENLEAAWDALRPERVFAFTAHASTSYADLAYQPGDVLLFGPEPTGLAQDVLEDPHVTAQV 147
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPM+ GRRSLNLSNAAAV YEAWRQHGFAG V
Sbjct 148 RIPMVPGRRSLNLSNAAAVVTYEAWRQHGFAGGV 181
>gi|226365700|ref|YP_002783483.1| RNA methyltransferase [Rhodococcus opacus B4]
gi|226244190|dbj|BAH54538.1| putative RNA methyltransferase [Rhodococcus opacus B4]
Length=155
Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/153 (74%), Positives = 126/153 (83%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR++F PRI PNTGNAIR A TGCELHLV PLGFDLSEPKL+RAGLDYHDLASVTVH
Sbjct 1 MFRVMFHEPRIPPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+L AW A+ PARVFAFTA AT + ++ YR GDVL+FGPEPTGL LAD H+T +V
Sbjct 61 ENLEAAWAAVGPARVFAFTAHATVSYADIAYRPGDVLLFGPEPTGLSAEVLADPHVTERV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
RIPML GRRSLNLSNAAA+ YEAWRQHGF+GA
Sbjct 121 RIPMLPGRRSLNLSNAAALVTYEAWRQHGFSGA 153
>gi|54022887|ref|YP_117129.1| putative ribosomal RNA methyltransferase [Nocardia farcinica
IFM 10152]
gi|54014395|dbj|BAD55765.1| putative ribosomal RNA methyltransferase [Nocardia farcinica
IFM 10152]
Length=154
Score = 236 bits (602), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 113/154 (74%), Positives = 126/154 (82%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF L+F PRI PNTGNAIR A TGC LHL+EPLGFDLSE KLRRAGLDYHDLASVTVH
Sbjct 1 MFHLVFHEPRIPPNTGNAIRLVAGTGCALHLIEPLGFDLSEAKLRRAGLDYHDLASVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
SLA AWEAL+P RV+AFT Q +T +T++ YR GDVL+FG EPTGL LAD HIT ++
Sbjct 61 ESLAAAWEALAPERVYAFTTQGSTRYTDIAYRPGDVLLFGTEPTGLPAEVLADPHITDRL 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPML GRRS+NLSNAAAV VYEAWRQ GF GA+
Sbjct 121 RIPMLPGRRSMNLSNAAAVTVYEAWRQQGFPGAI 154
>gi|296138668|ref|YP_003645911.1| tRNA/rRNA methyltransferase SpoU [Tsukamurella paurometabola
DSM 20162]
gi|296026802|gb|ADG77572.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola
DSM 20162]
Length=154
Score = 233 bits (595), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/154 (75%), Positives = 118/154 (77%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR+LF PRIAPNTGNAIR A TGCELHLVEPLGFDLSEPKLRRAGLDYHDLA V VH
Sbjct 1 MFRILFFEPRIAPNTGNAIRLAAVTGCELHLVEPLGFDLSEPKLRRAGLDYHDLAHVRVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
A L AW AL P RVFAFTA A + Y AGDVLMFGPEPTGL L D H+T V
Sbjct 61 ADLEAAWSALRPERVFAFTAHARRYHHEIAYSAGDVLMFGPEPTGLPPEALGDPHVTESV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLA RRSLNLSNAAAV YEAWRQ GF G V
Sbjct 121 RIPMLASRRSLNLSNAAAVVAYEAWRQQGFDGGV 154
>gi|312140792|ref|YP_004008128.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
gi|311890131|emb|CBH49449.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
Length=150
Score = 233 bits (595), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 111/150 (74%), Positives = 123/150 (82%), Gaps = 0/150 (0%)
Query 5 LFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 64
+F PRI PNTGNAIR A TGCELHLV PLGFDLSEPKLRRAGLDYHDLASVTVH +L
Sbjct 1 MFHEPRIPPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLRRAGLDYHDLASVTVHENLE 60
Query 65 HAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRIPM 124
AW+AL P RVFAFTA A+T + ++ Y+ GDVL+FGPEPTGL + L D H+T QVRIPM
Sbjct 61 AAWDALRPERVFAFTAHASTSYADLAYQPGDVLLFGPEPTGLAQDVLEDPHVTAQVRIPM 120
Query 125 LAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
+ GRRSLNLSNAAAV YEAWRQHGFAG V
Sbjct 121 VPGRRSLNLSNAAAVVTYEAWRQHGFAGGV 150
>gi|111023195|ref|YP_706167.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
gi|110822725|gb|ABG98009.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
Length=151
Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/149 (74%), Positives = 123/149 (83%), Gaps = 0/149 (0%)
Query 5 LFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 64
+F PRI PNTGNAIR A TGCELHLV PLGFDLSEPKL+RAGLDYHDLASVTVH +L
Sbjct 1 MFHEPRIPPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVHENLE 60
Query 65 HAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRIPM 124
AW AL PARV+AFTA AT + ++ Y+ GDVL+FGPEPTGL E LAD H+T ++RIPM
Sbjct 61 AAWAALEPARVYAFTAHATVSYADIAYQPGDVLLFGPEPTGLSEEVLADPHVTERLRIPM 120
Query 125 LAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
L GRRSLNLSNAAA+ YEAWRQHGF+GA
Sbjct 121 LPGRRSLNLSNAAALVTYEAWRQHGFSGA 149
>gi|326381925|ref|ZP_08203618.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
B-59395]
gi|326199351|gb|EGD56532.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
B-59395]
Length=154
Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/154 (67%), Positives = 126/154 (82%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR+++ P I PNTGNAIR A TGCELHL+EPLGF +++ ++RRAGLDYH++A+VTVH
Sbjct 1 MFRIVYFQPCIPPNTGNAIRIAANTGCELHLIEPLGFTMTDAQVRRAGLDYHEMANVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
LA AWE L+P RVFAFTA AT +T+V Y GDVL+FGPEPTGL + LAD H+T Q+
Sbjct 61 PDLATAWEKLAPTRVFAFTAHATRFYTDVSYEPGDVLLFGPEPTGLPDEVLADPHVTDQL 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPML GRRS+NL+NA +VA+YEAWRQ+GF GAV
Sbjct 121 RIPMLEGRRSMNLANATSVALYEAWRQNGFDGAV 154
>gi|169630781|ref|YP_001704430.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus ATCC
19977]
gi|169242748|emb|CAM63776.1| Probable tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus]
Length=153
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/154 (72%), Positives = 128/154 (84%), Gaps = 1/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF +LF PRIAPNTGNAIR A TGCELHLV+PL FDLSE K+RRAGLDYHD+ASVTVH
Sbjct 1 MFHILFHEPRIAPNTGNAIRMVAGTGCELHLVQPL-FDLSEAKVRRAGLDYHDMASVTVH 59
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+L+ AW+ L P RV+AFTA A+ +T++ Y+ GDVL+FGPEPTGLD LAD HIT +V
Sbjct 60 ENLSAAWKTLKPQRVYAFTAHASVTYTDIAYQPGDVLLFGPEPTGLDAEVLADPHITEKV 119
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIP+L GRRSLNLSNAAA+A YEAWRQH FAG+V
Sbjct 120 RIPLLPGRRSLNLSNAAAIAAYEAWRQHDFAGSV 153
>gi|343926621|ref|ZP_08766119.1| putative RNA methyltransferase [Gordonia alkanivorans NBRC 16433]
gi|343763373|dbj|GAA13045.1| putative RNA methyltransferase [Gordonia alkanivorans NBRC 16433]
Length=154
Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 101/154 (66%), Positives = 123/154 (80%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR++F P I PNTGNAIR A TGCELHL+EPLGF +S+ +++RAGLDYH++A+VTVH
Sbjct 1 MFRIMFYQPCIPPNTGNAIRLAANTGCELHLIEPLGFSMSDAQVKRAGLDYHEMANVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+L AW L P RVFAFTA A T+V YR GDVL+FGPEPTGL + LA+ +T +V
Sbjct 61 PNLVTAWTTLKPERVFAFTAHAERYHTDVDYRPGDVLLFGPEPTGLPDEVLAEPEVTDRV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRS NL+NAA++ VYEAWRQ+GFAGAV
Sbjct 121 RIPMLAGRRSHNLANAASIVVYEAWRQNGFAGAV 154
>gi|262201698|ref|YP_003272906.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
gi|262085045|gb|ACY21013.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM
43247]
Length=154
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/154 (66%), Positives = 121/154 (79%), Gaps = 0/154 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR++F P I PNTGNAIR A TGCELHL+EPLGF +S+ +++RAGLDYH++A+VTVH
Sbjct 1 MFRIMFYQPCIPPNTGNAIRLAANTGCELHLIEPLGFSMSDAQVKRAGLDYHEMATVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+L AW L P RVFAFTA A T+V Y GDVL+FGPEPTGL + LA+ IT +V
Sbjct 61 PNLVTAWTTLKPERVFAFTAHAERFHTDVDYAPGDVLLFGPEPTGLPDDVLAEPEITDRV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
RIPMLAGRRS NL+NAA++AVYEAWRQ GF GAV
Sbjct 121 RIPMLAGRRSHNLANAASIAVYEAWRQQGFGGAV 154
>gi|317508477|ref|ZP_07966145.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
gi|316253225|gb|EFV12627.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
Length=154
Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/153 (67%), Positives = 118/153 (78%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR++ PRIA NTG+ IR AATGCELHLVEPLGFDLSEPKLRRAGLDYHDLA V VH
Sbjct 1 MFRVMLFEPRIAGNTGSMIRVSAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLAHVVVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
LA A A+ ARVFAFT + +++ Y+ GDVL+FGPEPTGL E + ++
Sbjct 61 PDLATALRAVPGARVFAFTTSGSARHSDIAYQEGDVLLFGPEPTGLPEEVARHPRVAERL 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
RIPMLAGRRSLNL+NAA +AVYEAWRQHGFAG+
Sbjct 121 RIPMLAGRRSLNLANAATLAVYEAWRQHGFAGS 153
>gi|300786824|ref|YP_003767115.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32]
gi|299796338|gb|ADJ46713.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32]
gi|340528310|gb|AEK43515.1| RNA methyltransferase CspR [Amycolatopsis mediterranei S699]
Length=155
Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/151 (67%), Positives = 114/151 (76%), Gaps = 0/151 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR+LF P I PNTGNAIR A TGCELHLVEPLGF L + +LRRAGLDYHDLA V VH
Sbjct 1 MFRVLFYQPEIPPNTGNAIRLAANTGCELHLVEPLGFTLEDKQLRRAGLDYHDLARVRVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
ASL AWE L PA+V+AFTA AT L+T+V Y GDVLMFGPE GL A +T +V
Sbjct 61 ASLVAAWEVLLPAKVYAFTASATRLYTDVAYTPGDVLMFGPESVGLPAAVQEAPEVTDRV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFA 151
R+PML RSLNL+N AA+ VYEAWRQ+GFA
Sbjct 121 RLPMLPTSRSLNLANTAAITVYEAWRQNGFA 151
>gi|311743114|ref|ZP_07716922.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272]
gi|311313794|gb|EFQ83703.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272]
Length=156
Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 119/150 (80%), Gaps = 1/150 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR+ F PRIA NTG+AIR AATG ELHLV+PL FDL + KLRRAGLDYHDLA VTVH
Sbjct 1 MFRICFFEPRIAGNTGSAIRLAAATGSELHLVDPL-FDLEDTKLRRAGLDYHDLAVVTVH 59
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
A L AW+ L PARVFAFTAQA ++T+V YR GDVL+FGPEPTGL + D +T ++
Sbjct 60 ADLDAAWDHLLPARVFAFTAQAERVYTDVRYRPGDVLLFGPEPTGLPGEVMDDPRVTDRL 119
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGF 150
R+PML GRRS+NL+N A+VAVYEAWRQH F
Sbjct 120 RLPMLPGRRSMNLANCASVAVYEAWRQHSF 149
>gi|300741849|ref|ZP_07071870.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
gi|300381034|gb|EFJ77596.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
Length=155
Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/152 (64%), Positives = 116/152 (77%), Gaps = 0/152 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF++LF +P I NTGNAIR A TG ELHLVEPLGF+ + LRRAGLDYHDLA VTVH
Sbjct 1 MFKILFYTPEIPGNTGNAIRLAAVTGAELHLVEPLGFNFEDAHLRRAGLDYHDLAVVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+L AW+A+ PARVFAFT A T + ++ YR GDVLMFGPE GL D HIT +V
Sbjct 61 KTLQDAWKAMMPARVFAFTTTAATSYADLEYRDGDVLMFGPESVGLPADVQQDEHITERV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAG 152
+IPM+ GRRSLNL+N+A++A++EAWRQHGF G
Sbjct 121 KIPMIPGRRSLNLANSASIAIFEAWRQHGFTG 152
>gi|119962280|ref|YP_948432.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
gi|119949139|gb|ABM08050.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
TC1]
Length=155
Score = 206 bits (525), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/153 (65%), Positives = 116/153 (76%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR+LF +P I NTGNAIR A TG ELHLVEPLGFD S+ KLRRAGLDYHDLA VTVH
Sbjct 1 MFRILFHTPEIPGNTGNAIRLAAITGAELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+ AW AL P RVFA+T+ T +T++ YR GDVLMFGPE GL + D H+T +V
Sbjct 61 KDIEAAWAALKPERVFAYTSDGETSYTDISYREGDVLMFGPESVGLPDWLKQDPHVTARV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
R+PM RSLNL+NAA++AV+EAWRQ+GFAGA
Sbjct 121 RLPMKPSLRSLNLANAASIAVFEAWRQNGFAGA 153
>gi|296394298|ref|YP_003659182.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
gi|296181445|gb|ADG98351.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
44985]
Length=154
Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/152 (66%), Positives = 114/152 (75%), Gaps = 0/152 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR++ PRIA NTG+ IR AATGCELHLVEPLGF LSEPKLRRAGLDYHDLA V VH
Sbjct 1 MFRVMLFEPRIAGNTGSLIRVSAATGCELHLVEPLGFGLSEPKLRRAGLDYHDLAHVVVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
A A+ AR+FAFT +T N+ Y+AGDVL+FGPEPTGL ++ +
Sbjct 61 PGFDEALAAVPDARIFAFTVAGSTRHDNIAYQAGDVLLFGPEPTGLPAEVAHHPRVSDRA 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAG 152
RIPMLAGRRSLNL+NAA +AVYEAWRQHGFAG
Sbjct 121 RIPMLAGRRSLNLANAATIAVYEAWRQHGFAG 152
>gi|116671282|ref|YP_832215.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
gi|116611391|gb|ABK04115.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
Length=155
Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/153 (65%), Positives = 116/153 (76%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR+LF +P I NTGNAIR A TG ELHLVEPLGFD S+ KLRRAGLDYHDLA VTVH
Sbjct 1 MFRILFHTPEIPGNTGNAIRLAAITGAELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
S+ AWEAL P RV+AFT+ T + ++ Y GDVL+FGPE GL D H+T +V
Sbjct 61 KSIEAAWEALQPERVYAFTSDGETSYADISYLPGDVLLFGPESVGLPAELKNDPHVTSRV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
R+PML RSLNL+NAA++AV+EAWRQ+GFAGA
Sbjct 121 RLPMLPSLRSLNLANAASIAVFEAWRQNGFAGA 153
>gi|311111742|ref|YP_003982964.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
gi|310943236|gb|ADP39530.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
Length=162
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/152 (63%), Positives = 116/152 (77%), Gaps = 0/152 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
+F++LF +P I NTGNAIR A TG ELHLVEPLGF+ + LRRAGLDYHDLA VTVH
Sbjct 8 VFKILFYTPEIPGNTGNAIRLAAVTGAELHLVEPLGFNFEDAHLRRAGLDYHDLAVVTVH 67
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+L AW+A+ PARVFAFT A T + ++ YR GDVLMFGPE GL D HIT +V
Sbjct 68 KTLQDAWKAMMPARVFAFTTTAATSYADLEYRDGDVLMFGPESVGLPADVQQDEHITERV 127
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAG 152
+IPM+ GRRSLNL+N+A++A++EAWRQHGF G
Sbjct 128 KIPMIPGRRSLNLANSASIAIFEAWRQHGFTG 159
>gi|220913205|ref|YP_002488514.1| tRNA/rRNA methyltransferase SpoU [Arthrobacter chlorophenolicus
A6]
gi|219860083|gb|ACL40425.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
A6]
Length=155
Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 98/153 (65%), Positives = 113/153 (74%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR+LF P I NTGNAIR A TG ELHLVEPLGFD S+ KLRRAGLDYHDLA VTVH
Sbjct 1 MFRILFHEPEIPGNTGNAIRLAAITGAELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+L AW L P RV+AFT+ T +T++ Y+ GDVLMFG E GL +D H+T V
Sbjct 61 PTLEDAWRHLQPERVYAFTSDGTASYTDIAYQPGDVLMFGRESDGLPAGVKSDPHVTATV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
R+PML RSLNL+NAA++AVYEAWRQ GFAGA
Sbjct 121 RLPMLPALRSLNLANAASIAVYEAWRQQGFAGA 153
>gi|325963950|ref|YP_004241856.1| rRNA methylase, , group 2 [Arthrobacter phenanthrenivorans Sphe3]
gi|323470037|gb|ADX73722.1| rRNA methylase, putative, group 2 [Arthrobacter phenanthrenivorans
Sphe3]
Length=155
Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/153 (64%), Positives = 113/153 (74%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR+LF +P I NTGNAIR A TG ELHLVEPLGFD S+ KLRRAGLDYHDLA VTVH
Sbjct 1 MFRILFHAPEIPGNTGNAIRLAAITGAELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+ AW+ L P RV+AFT+ T +T++ Y+ GDVLMFG E GL D H+T V
Sbjct 61 PGIEEAWQHLQPERVYAFTSDGTASYTDISYQPGDVLMFGRESVGLPAELKTDPHVTATV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
R+PML RSLNL+NAA++AVYEAWRQ GFAGA
Sbjct 121 RLPMLPALRSLNLANAASIAVYEAWRQQGFAGA 153
>gi|255327010|ref|ZP_05368086.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa
ATCC 25296]
gi|255296227|gb|EET75568.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa
ATCC 25296]
Length=155
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/152 (62%), Positives = 115/152 (76%), Gaps = 0/152 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MF++LF +P I NTGNAIR A TG ELHLV+PLGF+ + LRRAGLDYHDLA VTVH
Sbjct 1 MFKILFYTPEIPGNTGNAIRLAAITGAELHLVKPLGFNFDDAHLRRAGLDYHDLAVVTVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
+L AWEAL+P RVFAFT A+T + ++ YR GDV MFGPE GL D H+T +V
Sbjct 61 ETLEDAWEALAPERVFAFTTTASTSYADIEYRPGDVFMFGPESVGLPAEVQQDPHVTERV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAG 152
+IPM GRRSLNL+N+A++A++EAWRQ+GF G
Sbjct 121 KIPMKPGRRSLNLANSASIAIFEAWRQNGFEG 152
>gi|302527165|ref|ZP_07279507.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
gi|302436060|gb|EFL07876.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
Length=153
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 113/150 (76%), Gaps = 0/150 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR+LF P I PNTGNAIR A TGCELHLVEPLGF L + +LRRAGLDYHDLA V VH
Sbjct 1 MFRVLFYRPEIPPNTGNAIRLAANTGCELHLVEPLGFTLEDKQLRRAGLDYHDLARVHVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
A LA AW+ L PA+V+AF+A AT L+T+V Y GDVLMFGPE GL + +T ++
Sbjct 61 ADLAAAWQVLLPAKVYAFSATATRLYTDVSYAPGDVLMFGPESAGLPDEVQRAAEVTDRL 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGF 150
R+PML RSLNL+N AA+AVYE WRQ+GF
Sbjct 121 RLPMLPNNRSLNLANTAAIAVYEGWRQNGF 150
>gi|332671773|ref|YP_004454781.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
gi|332340811|gb|AEE47394.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
Length=154
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 102/152 (68%), Positives = 111/152 (74%), Gaps = 0/152 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
M + F PRI NTGNAIR A TG LHLVEPLGFDLSE +LRRAGLDYHDLA V VH
Sbjct 1 MLHVAFFEPRIPGNTGNAIRMAAGTGATLHLVEPLGFDLSEARLRRAGLDYHDLAHVVVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
AS + L +RV AFT QATT F +VGYR DVL+FGPEPTGL LA +T Q+
Sbjct 61 ASFDALLDVLPGSRVLAFTTQATTSFADVGYREDDVLLFGPEPTGLPADVLAHPRVTDQL 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAG 152
RIPML GRRS+NLSNAAAVA YEAWRQ GF G
Sbjct 121 RIPMLPGRRSMNLSNAAAVATYEAWRQLGFPG 152
>gi|319948750|ref|ZP_08022870.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
gi|319437583|gb|EFV92583.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
Length=163
Score = 200 bits (509), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 100/152 (66%), Positives = 112/152 (74%), Gaps = 0/152 (0%)
Query 3 RLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHAS 62
R+LF P I PNTGNAIR A GCELHL PLGFDLSEP LRRAGLDYHDLA V VH
Sbjct 7 RVLFDRPCIPPNTGNAIRMAAGAGCELHLAGPLGFDLSEPHLRRAGLDYHDLAHVEVHED 66
Query 63 LAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRI 122
L A+ L PARV+AF+A+A V + GDVL+FGPEPTGL E LAD +T +VRI
Sbjct 67 LESAYSRLLPARVWAFSARADLALPQVRFAPGDVLLFGPEPTGLAEDVLADPRVTARVRI 126
Query 123 PMLAGRRSLNLSNAAAVAVYEAWRQHGFAGAV 154
PML GRRS+NLSNAAAVAVYEAWRQ + G +
Sbjct 127 PMLPGRRSMNLSNAAAVAVYEAWRQQDYQGGM 158
>gi|334336064|ref|YP_004541216.1| tRNA/rRNA methyltransferase (SpoU) [Isoptericola variabilis 225]
gi|334106432|gb|AEG43322.1| tRNA/rRNA methyltransferase (SpoU) [Isoptericola variabilis 225]
Length=169
Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 102/157 (65%), Positives = 120/157 (77%), Gaps = 4/157 (2%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
+++ PRI NTG+AIR A TG LHLVEPLGFDLSE KL+RAGLDYHDLA + VH
Sbjct 13 FLHVVYFEPRIPGNTGSAIRLAAVTGARLHLVEPLGFDLSEAKLKRAGLDYHDLAVMDVH 72
Query 61 ASLAHAWEAL----SPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHI 116
SL A+EA+ ARVFAFT +ATT +T+V YR GDVL+FGPEPTGL + LA +
Sbjct 73 PSLDAAFEAVLAGTPDARVFAFTTRATTSYTDVTYRHGDVLLFGPEPTGLPDDVLAHPRL 132
Query 117 TGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
T Q+RIPML GRRSLNL+NAA++AVYEAWRQ GFAGA
Sbjct 133 TDQLRIPMLPGRRSLNLTNAASIAVYEAWRQTGFAGA 169
>gi|257056238|ref|YP_003134070.1| putative rRNA methylase SpoU family [Saccharomonospora viridis
DSM 43017]
gi|256586110|gb|ACU97243.1| predicted rRNA methylase SpoU family [Saccharomonospora viridis
DSM 43017]
Length=158
Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 96/153 (63%), Positives = 110/153 (72%), Gaps = 0/153 (0%)
Query 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
MFR++F P I NTGNAIR A TGCELHL+EPLGF L + LRRAGLDYHDLA + VH
Sbjct 1 MFRIVFFHPEIPGNTGNAIRLAANTGCELHLIEPLGFSLEDRYLRRAGLDYHDLAHIQVH 60
Query 61 ASLAHAWEALSPARVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQV 120
L AW+AL P V+AFT QA T+V Y GDVL+FGPE GL + LAD IT QV
Sbjct 61 RDLDAAWQALDPVHVYAFTTQAHRRHTDVDYAEGDVLLFGPESVGLPDEVLADERITDQV 120
Query 121 RIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153
R+PML RSLNL+N AA+AVYEAWRQH F G+
Sbjct 121 RLPMLPTSRSLNLTNTAAIAVYEAWRQHDFRGS 153
Lambda K H
0.323 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131222683000
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40