BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv3378c
Length=296
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610514|ref|NP_217895.1| hypothetical protein Rv3378c [Mycob... 617 6e-175
gi|121639304|ref|YP_979528.1| hypothetical protein BCG_3449c [My... 616 1e-174
gi|340628359|ref|YP_004746811.1| hypothetical protein MCAN_34041... 615 2e-174
gi|289747200|ref|ZP_06506578.1| conserved hypothetical protein [... 614 5e-174
gi|330801871|ref|XP_003288946.1| hypothetical protein DICPUDRAFT... 156 4e-36
gi|281209687|gb|EFA83855.1| hypothetical protein PPL_02925 [Poly... 148 8e-34
gi|66810337|ref|XP_638892.1| hypothetical protein DDB_G0283885 [... 143 3e-32
gi|66820362|ref|XP_643805.1| hypothetical protein DDB_G0275279 [... 128 9e-28
gi|66810339|ref|XP_638893.1| hypothetical protein DDB_G0283887 [... 127 2e-27
gi|330801869|ref|XP_003288945.1| hypothetical protein DICPUDRAFT... 124 1e-26
gi|281204970|gb|EFA79164.1| hypothetical protein PPL_07989 [Poly... 119 5e-25
gi|328870186|gb|EGG18561.1| hypothetical protein DFA_04055 [Dict... 119 6e-25
gi|159898667|ref|YP_001544914.1| hypothetical protein Haur_2146 ... 72.4 8e-11
gi|309799105|ref|ZP_07693358.1| conserved hypothetical protein [... 42.4 0.087
gi|322391239|ref|ZP_08064711.1| efflux ABC superfamily ATP bindi... 40.0 0.41
gi|306830221|ref|ZP_07463404.1| efflux ABC superfamily ATP bindi... 39.7 0.51
gi|322378279|ref|ZP_08052761.1| efflux ABC transporter, permease... 38.5 1.3
gi|330804377|ref|XP_003290172.1| hypothetical protein DICPUDRAFT... 36.2 6.7
>gi|15610514|ref|NP_217895.1| hypothetical protein Rv3378c [Mycobacterium tuberculosis H37Rv]
gi|15842973|ref|NP_338010.1| hypothetical protein MT3488 [Mycobacterium tuberculosis CDC1551]
gi|31794560|ref|NP_857053.1| hypothetical protein Mb3412c [Mycobacterium bovis AF2122/97]
60 more sequence titles
Length=296
Score = 617 bits (1592), Expect = 6e-175, Method: Compositional matrix adjust.
Identities = 296/296 (100%), Positives = 296/296 (100%), Gaps = 0/296 (0%)
Query 1 MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI 60
MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI
Sbjct 1 MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI 60
Query 61 RILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF 120
RILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF
Sbjct 61 RILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF 120
Query 121 YGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETH 180
YGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETH
Sbjct 121 YGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETH 180
Query 181 GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL 240
GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL
Sbjct 181 GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL 240
Query 241 RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG
Sbjct 241 RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
>gi|121639304|ref|YP_979528.1| hypothetical protein BCG_3449c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224991801|ref|YP_002646490.1| hypothetical protein JTY_3449 [Mycobacterium bovis BCG str. Tokyo
172]
gi|121494952|emb|CAL73438.1| Hypothetical protein BCG_3449c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224774916|dbj|BAH27722.1| hypothetical protein JTY_3449 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341603329|emb|CCC66010.1| hypothetical protein BCGM_3417c [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=296
Score = 616 bits (1589), Expect = 1e-174, Method: Compositional matrix adjust.
Identities = 295/296 (99%), Positives = 295/296 (99%), Gaps = 0/296 (0%)
Query 1 MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI 60
MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI
Sbjct 1 MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI 60
Query 61 RILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF 120
RILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF
Sbjct 61 RILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF 120
Query 121 YGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETH 180
YGDYKKRLPSTAQGAA VKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETH
Sbjct 121 YGDYKKRLPSTAQGAAAVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETH 180
Query 181 GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL 240
GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL
Sbjct 181 GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL 240
Query 241 RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG
Sbjct 241 RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
>gi|340628359|ref|YP_004746811.1| hypothetical protein MCAN_34041 [Mycobacterium canettii CIPT
140010059]
gi|340006549|emb|CCC45735.1| hypothetical protein MCAN_34041 [Mycobacterium canettii CIPT
140010059]
Length=296
Score = 615 bits (1587), Expect = 2e-174, Method: Compositional matrix adjust.
Identities = 295/296 (99%), Positives = 296/296 (100%), Gaps = 0/296 (0%)
Query 1 MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI 60
MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI
Sbjct 1 MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI 60
Query 61 RILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF 120
RILKMLF+HGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF
Sbjct 61 RILKMLFDHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF 120
Query 121 YGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETH 180
YGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETH
Sbjct 121 YGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETH 180
Query 181 GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL 240
GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL
Sbjct 181 GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL 240
Query 241 RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG
Sbjct 241 RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
>gi|289747200|ref|ZP_06506578.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289687728|gb|EFD55216.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=296
Score = 614 bits (1583), Expect = 5e-174, Method: Compositional matrix adjust.
Identities = 295/296 (99%), Positives = 295/296 (99%), Gaps = 0/296 (0%)
Query 1 MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI 60
MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI
Sbjct 1 MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSI 60
Query 61 RILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF 120
RILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF
Sbjct 61 RILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLF 120
Query 121 YGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETH 180
YGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVF NDAAESVAQFSISWNETH
Sbjct 121 YGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFCNDAAESVAQFSISWNETH 180
Query 181 GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL 240
GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL
Sbjct 181 GKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTL 240
Query 241 RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG
Sbjct 241 RRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
>gi|330801871|ref|XP_003288946.1| hypothetical protein DICPUDRAFT_79732 [Dictyostelium purpureum]
gi|325080977|gb|EGC34510.1| hypothetical protein DICPUDRAFT_79732 [Dictyostelium purpureum]
Length=374
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/302 (30%), Positives = 164/302 (55%), Gaps = 22/302 (7%)
Query 7 KEFLDLPLVSVAEIV--RCRGPKVSVFPFDGTRRWFHLECNP-------------QYDDY 51
+EF L ++ I+ R + V+ +DGTRR + +E YD Y
Sbjct 17 QEFNKLGDSDISNIIKNRLKNCNTMVYAYDGTRRSYLIENTNFNSTNDVEKETLIDYDQY 76
Query 52 QQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYI---VQALEGMALLANDEEIL 108
+ A+++ + L M+F+HGI+T+I P++ L +RG Y+ ++ L G+ L ++EE++
Sbjct 77 CKTAIKKLLYDLVMMFKHGIKTIIYPMWFCTLEERGPEYLPKFIKYLRGLNELLDNEELV 136
Query 109 SFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAES 168
YKE+ + V+FYG+Y++ L ++K F+++ T ++T H + FG + +E+
Sbjct 137 QLYKENGIRVIFYGEYRELL-ERGNDLILLKKFEEIAELTKNHTNHTILFGTTIKEPSET 195
Query 169 VAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSS--GKTSLY 226
+ +IS+ + PT+++++E YYG VD +IGF RFST P+L S G LY
Sbjct 196 IINNTISFYTKNQYKPTKKDLVENYYGLQVDDVSFYIGFDRFSTDGRPILLSDKGNEDLY 255
Query 227 FTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGC 286
+TV+P Y T+ R+IL+D ++ R +Y D + ++++ Y + + G+G
Sbjct 256 YTVSPHSYFTKNNFRKILFDKLFCRSNVNAKEYKLKVID-VELMKDFYESNSTSIMGIGS 314
Query 287 VH 288
V+
Sbjct 315 VN 316
>gi|281209687|gb|EFA83855.1| hypothetical protein PPL_02925 [Polysphondylium pallidum PN500]
Length=369
Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/308 (32%), Positives = 151/308 (50%), Gaps = 27/308 (8%)
Query 8 EFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHL--ECNPQ-----------YDDYQQA 54
FL+ + ++EIVR K VF +DGTRR HL E N ++DY
Sbjct 2 NFLNKSKIEISEIVRTSKTKTLVFAYDGTRR-SHLINEINKNKGTDDSLIEINWNDYSSK 60
Query 55 ALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRY---IVQALEGMALLANDEEILSFY 111
+ ++ I + M+ +HGI TVI P++ L RG Y ++ L G+ L D ++ +
Sbjct 61 SFKKMIDLTIMMMKHGIHTVIYPMWFPTLGKRGPEYYPKFIKYLWGLNCLITDSRLMDIF 120
Query 112 KEHEVHVLFYGDYKK--RLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESV 169
+ ++FYG++++ R+ + + +++S L T T H L FG E +
Sbjct 121 LSLGIRIVFYGEWREFCRIGNDEELENLMES---LMSKTKHCTNHLLLFGTNITSTTEII 177
Query 170 AQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSS--GKTSLYF 227
++ SI + + H K P++ E+IE YYG VD D++IGF RF T P + S G +LYF
Sbjct 178 SKLSIDYFQIHNKLPSKNELIEQYYGVPVDSVDLYIGFDRFCTDGRPPIISEEGSENLYF 237
Query 228 TVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCV 287
TV+P Y + R IL+DHIY R DY +D + ++ Y A G G V
Sbjct 238 TVSPHSYFNKKQFRSILFDHIYARSVVNSKDYELKKSDII-LMNEFYNANSMSTLGCGNV 296
Query 288 HDG--IWF 293
WF
Sbjct 297 QKNGYYWF 304
>gi|66810337|ref|XP_638892.1| hypothetical protein DDB_G0283885 [Dictyostelium discoideum AX4]
gi|60467535|gb|EAL65557.1| hypothetical protein DDB_G0283885 [Dictyostelium discoideum AX4]
Length=528
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/320 (28%), Positives = 158/320 (50%), Gaps = 35/320 (10%)
Query 7 KEFLDLPLVSVAEIVRCR--GPKVSVFPFDGTRRWFHLE--------------------- 43
+EF L +++I+ R V+ +DGTRR + +E
Sbjct 11 QEFNKLTDNEISKIINSRLNNCNTMVYAYDGTRRSYLIENTISKLQTNGIHNNKCKFTGK 70
Query 44 ---CNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYI---VQALEG 97
YDDY + A+ + + L M+F+HGI+T++ P++ L DRG Y+ ++ L G
Sbjct 71 DEKTTIDYDDYCKTAISKLLFDLVMMFKHGIKTIVYPMWFCTLEDRGPEYLPKFIKYLSG 130
Query 98 MALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLC 157
+ L +E ++ YKE + V+FYG+Y K L ++++F+ + T N H +
Sbjct 131 LKALLENETLVKLYKECGIRVIFYGEYIKLL-ERGNDPILLETFNKIMELTKDNISHTIL 189
Query 158 FGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPL 217
FG + ++++ + SI + E + PT+ ++I+ YYG VD+ ++GF RFST P+
Sbjct 190 FGTTIQEPSQTIIENSIDFFEKYNYRPTKNQLIKKYYGVDVDQVSFYLGFDRFSTDGRPI 249
Query 218 LSS--GKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYR 275
S G LY+T++P Y ++ R++L+D +Y R +Y D + +++ Y
Sbjct 250 YISDKGNEDLYYTISPHSYFSKINFRKVLFDKLYCRSNTNAKEYELKLTD-IEMMKEFYE 308
Query 276 AQPDRVFGVGCV--HDGIWF 293
V G+G V H W+
Sbjct 309 NNSTNVMGLGNVNPHGNYWY 328
>gi|66820362|ref|XP_643805.1| hypothetical protein DDB_G0275279 [Dictyostelium discoideum AX4]
gi|60471966|gb|EAL69920.1| hypothetical protein DDB_G0275279 [Dictyostelium discoideum AX4]
Length=322
Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/290 (28%), Positives = 149/290 (52%), Gaps = 22/290 (7%)
Query 17 VAEIV--RCRGPKVSVFPFDGTRRWFHLECNPQYD----DYQQAALRQSIRILKMLF--- 67
++EIV + G V+ FDG+ F L N + D D A+ ++ I K+L+
Sbjct 16 ISEIVIEKLSGNNTIVYAFDGST--FKLNSNNENDMENIDQCSTAMAPNVSINKLLYDLV 73
Query 68 ---EHGIETVISPIFSDDLLDRGDRYI---VQALEGMALLANDEEILSFYKEHEVHVLFY 121
+HGI+T+ P++ D + D+ Y+ +Q L+G++ L +E+++ YKE + V+FY
Sbjct 74 MMCQHGIKTICVPMWCDKIEDKSSDYLSYFIQYLQGLSELLENEQLVKMYKETNIRVIFY 133
Query 122 GDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHG 181
GD+K L ++ F+ + T +NT H + G + +E++ IS+ +G
Sbjct 134 GDFKLLLKH-CNALELLNKFELIMEQTKNNTNHTILLGTNIEEPSETIINNIISFYNLNG 192
Query 182 K-PPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLL--SSGKTSLYFTVAPSYYMTET 238
PT ++I+ YYG VD+ +++G +F+T P+L G LY+++ Y+++
Sbjct 193 NVKPTSIDLIKQYYGVMVDQVSLYLGSHKFTTQGRPILICDKGNEDLYYSIGSHEYLSKN 252
Query 239 TLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVH 288
R++L+D ++ R +Y D + +++ Y + V GVG V+
Sbjct 253 GFRKVLFDKLFCRKVANAKEYQLKIHD-IKMMKQFYLNNCENVMGVGNVN 301
>gi|66810339|ref|XP_638893.1| hypothetical protein DDB_G0283887 [Dictyostelium discoideum AX4]
gi|60467536|gb|EAL65558.1| hypothetical protein DDB_G0283887 [Dictyostelium discoideum AX4]
Length=495
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/249 (28%), Positives = 137/249 (56%), Gaps = 10/249 (4%)
Query 48 YDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYI---VQALEGMA-LLAN 103
Y++Y + A+ + + M+F+HGI+ ++ P++ L RG Y+ +Q L G++ LL
Sbjct 106 YNEYSKTAVHNFLYLSIMMFQHGIKNIVYPMWFCTLEKRGPEYLPKFIQYLWGLSKLLDP 165
Query 104 DEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGN 163
+ + ++E+ V ++FYG+YKK L ++ F+++ T +N+ L G
Sbjct 166 NYDFFKLFQENGVRIIFYGEYKKLL-ERGNDNELLSKFEEIMDKTKNNSNKILLLGTNIE 224
Query 164 DAAESVAQFSISWNETHGKPPTRREIIEGYYG--EYVDKADMFIGFGRFSTFDFPLLSS- 220
+ ++++ ++S+ + G+ PT+ ++I+ YYG +D ++GF RFST P+L S
Sbjct 225 EPSQTIINNTLSFYKKFGREPTKNDLIQHYYGVNTQIDDVSFYLGFDRFSTDGRPILISD 284
Query 221 -GKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPD 279
G LY+TV+P +++ R++LYDHIY R +Y + + + +++ Y +
Sbjct 285 KGAEDLYYTVSPHSFLSTNGFRKVLYDHIYQRTITNAKEY-ELKVNDIEMMKKFYENNSN 343
Query 280 RVFGVGCVH 288
+ G+G V+
Sbjct 344 NIMGIGNVN 352
>gi|330801869|ref|XP_003288945.1| hypothetical protein DICPUDRAFT_34855 [Dictyostelium purpureum]
gi|325080976|gb|EGC34509.1| hypothetical protein DICPUDRAFT_34855 [Dictyostelium purpureum]
Length=508
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/254 (29%), Positives = 142/254 (56%), Gaps = 10/254 (3%)
Query 48 YDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYI---VQALEGMALLAND 104
Y +Y + A+ + + + +F+HGI+T++ P++ L RG Y+ +Q L G++ L D
Sbjct 87 YLEYSKTAIHKFLNLSITMFQHGIKTIVYPMWFCTLEKRGPEYLPKFIQYLWGLSALLED 146
Query 105 EEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGND 164
++ Y E + V+FYG+YKK L + A+++ F+ + T +N + L G +
Sbjct 147 PSLVQQYYESGIKVVFYGEYKKLL-ARVNDRALLEKFEKIMELTKNNNKKLLLLGTNIEE 205
Query 165 AAESVAQFSISWNETHGKPPTRREIIEGYYGE-YVDKADMFIGFGRFSTFDFPLLSS--G 221
++++ ++S+ + GK PT++++++ YYG+ + +IGF RFST P+L S G
Sbjct 206 PSQTIINNTLSYFKKFGKEPTKKDLVKEYYGDSNIQDVSFYIGFDRFSTDGRPILISENG 265
Query 222 KTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRV 281
LY++V+P + T R++LYDH+Y R +Y +D + ++++ Y + ++
Sbjct 266 DEDLYYSVSPHSFFTTEHFRKVLYDHLYQRSCVNAKEYELKISD-VEMMKDFYESNAGQI 324
Query 282 FGVGCVHD--GIWF 293
GVGC+ + W+
Sbjct 325 MGVGCIQEQGNYWY 338
>gi|281204970|gb|EFA79164.1| hypothetical protein PPL_07989 [Polysphondylium pallidum PN500]
Length=787
Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/287 (28%), Positives = 144/287 (51%), Gaps = 27/287 (9%)
Query 7 KEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKML 66
+EFL+L + ++++V G K + Y Q A+R+ + L M+
Sbjct 2 EEFLNLSNIEISKLVSESGNKTML--------------------YSQNAIRKLLDHLLMI 41
Query 67 FEHGIETVISPIFSDDLLDRGDRYI---VQALEGMALLANDEEILSFYKEHEVHVLFYGD 123
FEHGI TVI P++ L RG Y+ + L+G+ L + +L Y + + ++FYG+
Sbjct 42 FEHGISTVIYPMWFYTLEMRGPEYVPKFIGYLQGLKSLLLEPLLLQAYMKAGIRIIFYGE 101
Query 124 YKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKP 183
+++ L +++ F+ + T +NT+ + FG D + + SI++ + + +
Sbjct 102 FRELL-MRENDTKLIEVFERIMEITKNNTKKVVLFGTNIQDPSTLIIDKSINFFKKNNRE 160
Query 184 PTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLL--SSGKTSLYFTVAPSYYMTETTLR 241
PT+ E+I+ YYG V++ + GF RFST P+L G LYF+V+P + T+ LR
Sbjct 161 PTKSELIKEYYGVEVEEVSFYFGFDRFSTDGRPILLCDKGNEDLYFSVSPHSFFTQKQLR 220
Query 242 RILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVH 288
++L+DH++ R +Y D + +++ Y GVG V
Sbjct 221 KVLFDHLFCRSVANAKEYQLKVID-VEIMKTFYTMNTGNTMGVGEVQ 266
>gi|328870186|gb|EGG18561.1| hypothetical protein DFA_04055 [Dictyostelium fasciculatum]
Length=357
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/297 (27%), Positives = 142/297 (48%), Gaps = 21/297 (7%)
Query 10 LDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHL-------------ECNPQYDDYQQAAL 56
+ L +A +VR G K VF +DGTRR HL + + ++DY + A
Sbjct 4 MSLETDEIAAMVRKSGTKSMVFAYDGTRR-SHLIQEVSKTEGPDSEKLSIDWNDYSKNAF 62
Query 57 RQSIRILKMLFEHGIETVISPIFSDDLLDRGDRY---IVQALEGMALLANDEEILSFYKE 113
++ + I ++F HG++ + P++ L RG Y + + G+ L +D + Y+
Sbjct 63 KKMLEISVLMFAHGLQEITYPMWFPTLGKRGKEYTPKFISYMWGLNTLYSDPYLREKYEA 122
Query 114 HEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFS 173
+ ++FYG++++ L + + + + + + T++ L FG + A +A +
Sbjct 123 DGIRIIFYGEWRE-LCRLGEDPELERLLEKIQEDSKHRTKNVLLFGTNISSPATVMANLA 181
Query 174 ISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSS--GKTSLYFTVAP 231
I + + K PTR E+I YYG + DM++GF RF T P + S G +LYFTV+P
Sbjct 182 IDHYKKYNKTPTREEMIMDYYGYPLSDVDMYVGFDRFVTDGRPPIISENGNENLYFTVSP 241
Query 232 SYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVH 288
+ + LR IL+DH++ R +Y D + + + Y GVG +
Sbjct 242 HSFFNISVLRSILFDHLFNRTVANTKEYDLTRLD-IKSMHSFYSKNEKTALGVGNIQ 297
>gi|159898667|ref|YP_001544914.1| hypothetical protein Haur_2146 [Herpetosiphon aurantiacus DSM
785]
gi|159891706|gb|ABX04786.1| hypothetical protein Haur_2146 [Herpetosiphon aurantiacus DSM
785]
Length=289
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/250 (26%), Positives = 112/250 (45%), Gaps = 23/250 (9%)
Query 8 EFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHL-ECNPQYDDYQQAALRQSIRILKML 66
EFL PL ++ ++ P VF G+RR L + ++Y + + +Q ++ L++
Sbjct 9 EFLHAPLTTIRQV----APATMVFSSGGSRRKAALANMSAAGEEYARWSHQQLLKCLELF 64
Query 67 FEHGIETVISP-IFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYK 125
F HGI+ + P + + + Y + +A A + +L +Y+EH +++
Sbjct 65 FSHGIKHLFLPMLLPNQFQETTPNYREHIEQWVAWGAASQTMLEYYQEH--------NWR 116
Query 126 KRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVF--GNDAAESVAQFSISWNETHGKP 183
RL T + + L + L + V D + + Q + +T K
Sbjct 117 VRLLDTQYSPILADAAQRLQQPYDHPDQPTLWWFVVRDSEDPWQIIFQAA---QKTVFK- 172
Query 184 PTRREIIEGYYGEYVDKADMFIGFGRFSTFD--FPLLSSGKTSLYFTVAPSYYMTETTLR 241
TR + IE YGE + A++F+ FG+ P L G+ Y+T P Y ++E R
Sbjct 173 -TRSQAIEAIYGEPIPPAELFVSFGKPQVNHDLLPPLLVGELQCYWTQKPGYTLSEEEFR 231
Query 242 RILYDHIYLR 251
+ILYD +LR
Sbjct 232 QILYDFAFLR 241
>gi|309799105|ref|ZP_07693358.1| conserved hypothetical protein [Streptococcus infantis SK1302]
gi|308117340|gb|EFO54763.1| conserved hypothetical protein [Streptococcus infantis SK1302]
Length=244
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/72 (37%), Positives = 38/72 (53%), Gaps = 7/72 (9%)
Query 123 DYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSIS----WNE 178
D+ + +PS AQ VV ++D +IS SSN E+++ G DA E +S WNE
Sbjct 93 DFSQTMPSYAQ---VVSLYEDTSISVSSNEENKVLAGSIYTDAKEQGLTIPMSLLKNWNE 149
Query 179 THGKPPTRREII 190
GK T ++I
Sbjct 150 QTGKNLTASDVI 161
>gi|322391239|ref|ZP_08064711.1| efflux ABC superfamily ATP binding cassette transporter, permease
protein [Streptococcus peroris ATCC 700780]
gi|321145992|gb|EFX41381.1| efflux ABC superfamily ATP binding cassette transporter, permease
protein [Streptococcus peroris ATCC 700780]
Length=433
Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/81 (34%), Positives = 39/81 (49%), Gaps = 13/81 (16%)
Query 114 HEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFS 173
HEV D+ + +PS AQ VV ++D +IS SSN + ++ G D E
Sbjct 124 HEV------DFSQSMPSYAQ---VVSLYEDTSISVSSNEKEKVLAGTLYTDVNEQGLTIP 174
Query 174 IS----WNETHGKPPTRREII 190
+S WNE GK T ++I
Sbjct 175 MSLLKNWNEQTGKNLTASDVI 195
>gi|306830221|ref|ZP_07463404.1| efflux ABC superfamily ATP binding cassette transporter, permease
protein [Streptococcus mitis ATCC 6249]
gi|304427588|gb|EFM30685.1| efflux ABC superfamily ATP binding cassette transporter, permease
protein [Streptococcus mitis ATCC 6249]
Length=433
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/81 (35%), Positives = 39/81 (49%), Gaps = 13/81 (16%)
Query 114 HEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFS 173
HEV D+ + LPS AQ VV ++D +IS SSN + ++ G D E
Sbjct 124 HEV------DFSQALPSYAQ---VVSLYEDTSISVSSNEKEKVLAGSLYTDVNEEGLTIP 174
Query 174 IS----WNETHGKPPTRREII 190
+S WNE GK T ++I
Sbjct 175 MSLLKNWNEQTGKDLTASDVI 195
>gi|322378279|ref|ZP_08052761.1| efflux ABC transporter, permease protein [Streptococcus sp. M334]
gi|321280781|gb|EFX57799.1| efflux ABC transporter, permease protein [Streptococcus sp. M334]
Length=419
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/72 (35%), Positives = 35/72 (49%), Gaps = 7/72 (9%)
Query 123 DYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSIS----WNE 178
D + +PS AQ VV ++D +IS SSN + ++ G DA E IS WNE
Sbjct 113 DLSQTMPSYAQ---VVSLYEDTSISVSSNEKDKVVAGSLYTDANEQGLTIPISLLKNWNE 169
Query 179 THGKPPTRREII 190
G T ++I
Sbjct 170 QTGNNLTATDVI 181
>gi|330804377|ref|XP_003290172.1| hypothetical protein DICPUDRAFT_80916 [Dictyostelium purpureum]
gi|325079729|gb|EGC33316.1| hypothetical protein DICPUDRAFT_80916 [Dictyostelium purpureum]
Length=2335
Score = 36.2 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 22/77 (29%), Positives = 36/77 (47%), Gaps = 8/77 (10%)
Query 77 PIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAA 136
P + +D+ +R RY++ L G LL ND++ + + + Y KRLP
Sbjct 1599 PNWCNDIKNRNQRYVIVPLPGSNLLPNDDDFWGWITLFDDKGIAYIASNKRLP------- 1651
Query 137 VVKSFDDLTISTSSNTE 153
V S D + +S + N E
Sbjct 1652 -VNSLDSIPLSPNGNIE 1667
Lambda K H
0.323 0.140 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 492672993632
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40